npm - @r-universe/webr - Versions diffs - 2023.6.11 → 2023.6.21 - Mend

@r-universe/webr 2023.6.11 → 2023.6.21

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package/dist/vfs/usr/lib/R/tests/Examples/tools-Ex.Rout.save ADDED Viewed

@@ -0,0 +1,1125 @@
+R Under development (unstable) (2022-05-29 r82419) -- "Unsuffered Consequences"
+Copyright (C) 2022 The R Foundation for Statistical Computing
+Platform: aarch64-apple-darwin21.5.0 (64-bit)
+R is free software and comes with ABSOLUTELY NO WARRANTY.
+You are welcome to redistribute it under certain conditions.
+Type 'license()' or 'licence()' for distribution details.
+  Natural language support but running in an English locale
+R is a collaborative project with many contributors.
+Type 'contributors()' for more information and
+'citation()' on how to cite R or R packages in publications.
+Type 'demo()' for some demos, 'help()' for on-line help, or
+'help.start()' for an HTML browser interface to help.
+Type 'q()' to quit R.
+> pkgname <- "tools"
+> source(file.path(R.home("share"), "R", "examples-header.R"))
+> options(warn = 1)
+> library('tools')
+>
+> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
+> base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
+> cleanEx()
+> nameEx("CRANtools")
+> ### * CRANtools
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: CRANtools
+> ### Title: CRAN Package Repository Tools
+> ### Aliases: CRAN_package_db CRAN_check_results CRAN_check_details
+> ###   CRAN_check_issues summarize_CRAN_check_status R_CRAN_WEB R_CRAN_SRC
+>
+> ### ** Examples
+>
+>
+> cleanEx()
+> nameEx("HTMLheader")
+> ### * HTMLheader
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: HTMLheader
+> ### Title: Generate a Standard HTML Header for R Help
+> ### Aliases: HTMLheader
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+> cat(HTMLheader("This is a sample header"), sep="\n")
+<!DOCTYPE html>
+<html>
+<head><title>R: This is a sample header</title>
+<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+<link rel="stylesheet" type="text/css" href="/doc/html/R.css" />
+</head><body><div class="container">
+<h1> This is a sample header
+<img class="toplogo" src="/doc/html/Rlogo.svg" alt="[R logo]" />
+</h1>
+<hr/>
+<div style="text-align: center;">
+<a href="/doc/html/index.html"><img class="arrow" src="/doc/html/up.jpg" alt="[Top]" /></a>
+</div>
+>
+>
+>
+> cleanEx()
+> nameEx("Rd2HTML")
+> ### * Rd2HTML
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: Rd2HTML
+> ### Title: Rd Converters
+> ### Aliases: Rd2txt Rd2HTML Rd2ex Rd2latex
+> ### Keywords: documentation
+>
+> ### ** Examples
+> cleanEx()
+> nameEx("Rd2txt_options")
+> ### * Rd2txt_options
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: Rd2txt_options
+> ### Title: Set Formatting Options for Text Help
+> ### Aliases: Rd2txt_options
+> ### Keywords: documentation
+>
+> ### ** Examples
+>
+>
+>
+>
+> cleanEx()
+> nameEx("Rdutils")
+> ### * Rdutils
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: Rdutils
+> ### Title: Rd Utilities
+> ### Aliases: Rd_db
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+>
+> cleanEx()
+> nameEx("assertCondition")
+> ### * assertCondition
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: assertCondition
+> ### Title: Asserting Error Conditions
+> ### Aliases: assertCondition assertWarning assertError
+> ### Keywords: programming error
+>
+> ### ** Examples
+>
+>   assertError(sqrt("abc"))
+>   assertWarning(matrix(1:8, 4,3))
+>
+>   assertCondition( ""-1 ) # ok, any condition would satisfy this
+>
+> try( assertCondition(sqrt(2), "warning") )
+Error in assertCondition(sqrt(2), "warning") :
+  Failed to get warning in evaluating sqrt(2)
+> ## .. Failed to get warning in evaluating sqrt(2)
+>      assertCondition(sqrt("abc"), "error")   # ok
+> try( assertCondition(sqrt("abc"), "warning") )# -> error: had no warning
+Error in assertCondition(sqrt("abc"), "warning") :
+  Got simpleError in evaluating sqrt("abc"); wanted warning
+>      assertCondition(sqrt("abc"), "error")
+>   ## identical to assertError() call above
+>
+> assertCondition(matrix(1:5, 2,3), "warning")
+> try( assertCondition(matrix(1:8, 4,3), "error") )
+Error in assertCondition(matrix(1:8, 4, 3), "error") :
+  Got simpleWarning in evaluating matrix(1:8, 4, 3); wanted error
+> ## .. Failed to get expected error ....
+>
+> ## either warning or worse:
+> assertCondition(matrix(1:8, 4,3), "error","warning") # OK
+> assertCondition(matrix(1:8, 4, 3), "warning") # OK
+>
+> ## when both are signalled:
+> ff <- function() { warning("my warning"); stop("my error") }
+>     assertCondition(ff(), "warning")
+> ## but assertWarning does not allow an error to follow
+> try(assertWarning(ff()))
+Error in assertWarning(ff()) :
+  Got warning in evaluating ff(), but also an error
+>     assertCondition(ff(), "error")          # ok
+> assertCondition(ff(), "error", "warning") # ok (quietly, catching warning)
+>
+> ## assert that assertC..() does not assert [and use *one* argument only]
+> assertCondition( assertCondition(sqrt( 2   ), "warning") )
+> assertCondition( assertCondition(sqrt("abc"), "warning"), "error")
+> assertCondition( assertCondition(matrix(1:8, 4,3), "error"),
++                 "error")
+>
+>
+>
+> cleanEx()
+> nameEx("bibstyle")
+> ### * bibstyle
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: bibstyle
+> ### Title: Select or Define a Bibliography Style
+> ### Aliases: bibstyle getBibstyle
+> ### Keywords: utilties documentation
+>
+> ### ** Examples
+>
+> ## Don't show:
+> options(useFancyQuotes = FALSE)
+> ## End(Don't show)
+> refs <-
++ c(bibentry(bibtype = "manual",
++     title = "R: A Language and Environment for Statistical Computing",
++     author = person("R Core Team"),
++     organization = "R Foundation for Statistical Computing",
++     address = "Vienna, Austria",
++     year = 2013,
++     url = "https://www.R-project.org"),
++   bibentry(bibtype = "article",
++     author = c(person(c("George", "E.", "P."), "Box"),
++                person(c("David",  "R."),      "Cox")),
++     year = 1964,
++     title = "An Analysis of Transformations",
++     journal = "Journal of the Royal Statistical Society, Series B",
++     volume = 26, number = 2, pages = "211--243",
++     doi = "10.1111/j.2517-6161.1964.tb00553.x"))
+>
+> bibstyle("unsorted", sortKeys = function(refs) seq_along(refs),
++     fmtPrefix = function(paper) paste0("[", paper$.index, "]"),
++        .init = TRUE)
+<environment: 0x12a8be408>
+> print(refs, .bibstyle = "unsorted")
+[1] R Core Team (2013). _R: A Language and Environment for Statistical
+Computing_. R Foundation for Statistical Computing, Vienna, Austria.
+<https://www.R-project.org>.
+[2] Box GEP, Cox DR (1964). "An Analysis of Transformations." _Journal
+of the Royal Statistical Society, Series B_, *26*(2), 211-243.
+doi:10.1111/j.2517-6161.1964.tb00553.x
+<https://doi.org/10.1111/j.2517-6161.1964.tb00553.x>.
+>
+>
+>
+> cleanEx()
+> nameEx("buildVignettes")
+> ### * buildVignettes
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: buildVignettes
+> ### Title: List and Build Package Vignettes
+> ### Aliases: buildVignettes pkgVignettes
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+> gVigns <- pkgVignettes("grid")
+>
+>
+>
+> cleanEx()
+> nameEx("charsets")
+> ### * charsets
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: charsets
+> ### Title: Conversion Tables between Character Sets
+> ### Aliases: Adobe_glyphs charset_to_Unicode
+> ### Keywords: datasets
+>
+> ### ** Examples
+>
+> ## find Adobe names for ISOLatin2 chars.
+> latin2 <- charset_to_Unicode[, "ISOLatin2"]
+> aUnicode <- as.hexmode(paste0("0x", Adobe_glyphs$unicode))
+> keep <- aUnicode %in% latin2
+> aUnicode <- aUnicode[keep]
+> aAdobe <- Adobe_glyphs[keep, 1]
+> ## first match
+> aLatin2 <- aAdobe[match(latin2, aUnicode)]
+> ## all matches
+> bLatin2 <- lapply(1:256, function(x) aAdobe[aUnicode == latin2[x]])
+> format(bLatin2, justify = "none")
+  [1] ""                          "controlSTX"
+  [3] "controlSOT"                "controlETX"
+  [5] "controlEOT"                "controlENQ"
+  [7] "controlACK"                "controlBEL"
+  [9] "controlBS"                 "controlHT"
+ [11] "controlLF"                 "controlVT"
+ [13] "controlFF"                 "controlCR"
+ [15] "controlSO"                 "controlSI"
+ [17] "controlDLE"                "controlDC1"
+ [19] "controlDC2"                "controlDC3"
+ [21] "controlDC4"                "controlNAK"
+ [23] "controlSYN"                "controlETB"
+ [25] "controlCAN"                "controlEM"
+ [27] "controlSUB"                "controlESC"
+ [29] "controlFS"                 "controlGS"
+ [31] "controlRS"                 "controlUS"
+ [33] "space, spacehackarabic"    "exclam"
+ [35] "quotedbl"                  "numbersign"
+ [37] "dollar"                    "percent"
+ [39] "ampersand"                 "quotesingle"
+ [41] "parenleft"                 "parenright"
+ [43] "asterisk"                  "plus"
+ [45] "comma"                     "hyphen"
+ [47] "period"                    "slash"
+ [49] "zero"                      "one"
+ [51] "two"                       "three"
+ [53] "four"                      "five"
+ [55] "six"                       "seven"
+ [57] "eight"                     "nine"
+ [59] "colon"                     "semicolon"
+ [61] "less"                      "equal"
+ [63] "greater"                   "question"
+ [65] "at"                        "A"
+ [67] "B"                         "C"
+ [69] "D"                         "E"
+ [71] "F"                         "G"
+ [73] "H"                         "I"
+ [75] "J"                         "K"
+ [77] "L"                         "M"
+ [79] "N"                         "O"
+ [81] "P"                         "Q"
+ [83] "R"                         "S"
+ [85] "T"                         "U"
+ [87] "V"                         "W"
+ [89] "X"                         "Y"
+ [91] "Z"                         "bracketleft"
+ [93] "backslash"                 "bracketright"
+ [95] "asciicircum"               "underscore"
+ [97] "grave"                     "a"
+ [99] "b"                         "c"
+[101] "d"                         "e"
+[103] "f"                         "g"
+[105] "h"                         "i"
+[107] "j"                         "k"
+[109] "l"                         "m"
+[111] "n"                         "o"
+[113] "p"                         "q"
+[115] "r"                         "s"
+[117] "t"                         "u"
+[119] "v"                         "w"
+[121] "x"                         "y"
+[123] "z"                         "braceleft"
+[125] "bar, verticalbar"          "braceright"
+[127] "asciitilde"                "controlDEL"
+[129] ""                          ""
+[131] ""                          ""
+[133] ""                          ""
+[135] ""                          ""
+[137] ""                          ""
+[139] ""                          ""
+[141] ""                          ""
+[143] ""                          ""
+[145] ""                          ""
+[147] ""                          ""
+[149] ""                          ""
+[151] ""                          ""
+[153] ""                          ""
+[155] ""                          ""
+[157] ""                          ""
+[159] ""                          ""
+[161] "nbspace, nonbreakingspace" "Aogonek"
+[163] "breve"                     "Lslash"
+[165] "currency"                  "Lcaron"
+[167] "Sacute"                    "section"
+[169] "dieresis"                  "Scaron"
+[171] "Scedilla"                  "Tcaron"
+[173] "Zacute"                    "sfthyphen, softhyphen"
+[175] "Zcaron"                    "Zdot, Zdotaccent"
+[177] "degree"                    "aogonek"
+[179] "ogonek"                    "lslash"
+[181] "acute"                     "lcaron"
+[183] "sacute"                    "caron"
+[185] "cedilla"                   "scaron"
+[187] "scedilla"                  "tcaron"
+[189] "zacute"                    "hungarumlaut"
+[191] "zcaron"                    "zdot, zdotaccent"
+[193] "Racute"                    "Aacute"
+[195] "Acircumflex"               "Abreve"
+[197] "Adieresis"                 "Lacute"
+[199] "Cacute"                    "Ccedilla"
+[201] "Ccaron"                    "Eacute"
+[203] "Eogonek"                   "Edieresis"
+[205] "Ecaron"                    "Iacute"
+[207] "Icircumflex"               "Dcaron"
+[209] "Dcroat, Dslash"            "Nacute"
+[211] "Ncaron"                    "Oacute"
+[213] "Ocircumflex"               "Odblacute, Ohungarumlaut"
+[215] "Odieresis"                 "multiply"
+[217] "Rcaron"                    "Uring"
+[219] "Uacute"                    "Udblacute, Uhungarumlaut"
+[221] "Udieresis"                 "Yacute"
+[223] "Tcedilla, Tcommaaccent"    "germandbls"
+[225] "racute"                    "aacute"
+[227] "acircumflex"               "abreve"
+[229] "adieresis"                 "lacute"
+[231] "cacute"                    "ccedilla"
+[233] "ccaron"                    "eacute"
+[235] "eogonek"                   "edieresis"
+[237] "ecaron"                    "iacute"
+[239] "icircumflex"               "dcaron"
+[241] "dcroat, dmacron"           "nacute"
+[243] "ncaron"                    "oacute"
+[245] "ocircumflex"               "odblacute, ohungarumlaut"
+[247] "odieresis"                 "divide"
+[249] "rcaron"                    "uring"
+[251] "uacute"                    "udblacute, uhungarumlaut"
+[253] "udieresis"                 "yacute"
+[255] "tcedilla, tcommaaccent"    "dotaccent"
+>
+>
+>
+> cleanEx()
+> nameEx("checkFF")
+> ### * checkFF
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: checkFF
+> ### Title: Check Foreign Function Calls
+> ### Aliases: checkFF print.checkFF
+> ### Keywords: programming utilities
+>
+> ### ** Examples
+>
+>
+> cleanEx()
+> nameEx("checkPoFiles")
+> ### * checkPoFiles
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: checkPoFiles
+> ### Title: Check Translation Files for Inconsistent Format Strings
+> ### Aliases: checkPoFile checkPoFiles
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> ## Not run:
+> ##D checkPoFiles("de", "/path/to/R/src/directory")
+> ## End(Not run)
+>
+>
+>
+> cleanEx()
+> nameEx("checkRdaFiles")
+> ### * checkRdaFiles
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: checkRdaFiles
+> ### Title: Report on Details of Saved Images or Re-saves them
+> ### Aliases: checkRdaFiles resaveRdaFiles
+> ### Keywords: utilities
+>
+> ### ** Examples
+> ## Not run:
+> ##D ## from a package top-level source directory
+> ##D paths <- sort(Sys.glob(c("data/*.rda", "data/*.RData")))
+> ##D (res <- checkRdaFiles(paths))
+> ##D ## pick out some that may need attention
+> ##D bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$compress == "none")
+> ##D res[bad, ]
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("check_packages_in_dir")
+> ### * check_packages_in_dir
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: check_packages_in_dir
+> ### Title: Check Source Packages and Their Reverse Dependencies
+> ### Aliases: check_packages_in_dir summarize_check_packages_in_dir_depends
+> ###   summarize_check_packages_in_dir_results
+> ###   summarize_check_packages_in_dir_timings check_packages_in_dir_changes
+> ###   check_packages_in_dir_details
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> ## Not run:
+> ##D ## Check packages in dir without reverse dependencies:
+> ##D check_packages_in_dir(dir)
+> ##D ## Check packages in dir and their reverse dependencies using the
+> ##D ## defaults (all repositories in getOption("repos"), all "strong"
+> ##D ## reverse dependencies, no recursive reverse dependencies):
+> ##D check_packages_in_dir(dir, reverse = list())
+> ##D ## Check packages in dir with their reverse dependencies from CRAN,
+> ##D ## using all strong reverse dependencies and reverse suggests:
+> ##D check_packages_in_dir(dir,
+> ##D                       reverse = list(repos = getOption("repos")["CRAN"],
+> ##D                                      which = "most"))
+> ##D ## Check packages in dir with their reverse dependencies from CRAN,
+> ##D ## using '--as-cran' for the former but not the latter:
+> ##D check_packages_in_dir(dir,
+> ##D                       check_args = c("--as-cran", ""),
+> ##D                       reverse = list(repos = getOption("repos")["CRAN"]))
+> ## End(Not run)
+>
+>
+>
+> cleanEx()
+> nameEx("delimMatch")
+> ### * delimMatch
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: delimMatch
+> ### Title: Delimited Pattern Matching
+> ### Aliases: delimMatch
+> ### Keywords: character
+>
+> ### ** Examples
+>
+> x <- c("\\value{foo}", "function(bar)")
+> delimMatch(x)
+[1]  7 -1
+attr(,"match.length")
+[1]  5 -1
+> delimMatch(x, c("(", ")"))
+[1] -1  9
+attr(,"match.length")
+[1] -1  5
+>
+>
+>
+> cleanEx()
+> nameEx("dependsOnPkgs")
+> ### * dependsOnPkgs
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: dependsOnPkgs
+> ### Title: Find Reverse Dependencies
+> ### Aliases: dependsOnPkgs
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+>
+> cleanEx()
+> nameEx("encoded")
+> ### * encoded
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: encoded_text_to_latex
+> ### Title: Translate non-ASCII Text to LaTeX Escapes
+> ### Aliases: encoded_text_to_latex
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> x <- "fa\xE7ile"
+> encoded_text_to_latex(x, "latin1")
+[1] "fa{\\c c}ile"
+> ## Not run:
+> ##D ## create a tex file to show the upper half of 8-bit charsets
+> ##D x <- rawToChar(as.raw(160:255), multiple = TRUE)
+> ##D (x <- matrix(x, ncol = 16, byrow = TRUE))
+> ##D xx <- x
+> ##D xx[] <- encoded_text_to_latex(x, "latin1") # or latin2 or latin9
+> ##D xx <- apply(xx, 1, paste, collapse = "&")
+> ##D con <- file("test-encoding.tex", "w")
+> ##D header <- c(
+> ##D "\\documentclass{article}",
+> ##D "\\usepackage[T1]{fontenc}",
+> ##D "\\usepackage{Rd}",
+> ##D "\\begin{document}",
+> ##D "\\HeaderA{test}{}{test}",
+> ##D "\\begin{Details}\relax",
+> ##D "\\Tabular{cccccccccccccccc}{")
+> ##D trailer <- c("}", "\\end{Details}", "\\end{document}")
+> ##D writeLines(header, con)
+> ##D writeLines(paste0(xx, "\\"), con)
+> ##D writeLines(trailer, con)
+> ##D close(con)
+> ##D ## and some UTF_8 chars
+> ##D x <- intToUtf8(as.integer(
+> ##D     c(160:383,0x0192,0x02C6,0x02C7,0x02CA,0x02D8,
+> ##D       0x02D9, 0x02DD, 0x200C, 0x2018, 0x2019, 0x201C,
+> ##D       0x201D, 0x2020, 0x2022, 0x2026, 0x20AC)),
+> ##D                multiple = TRUE)
+> ##D x <- matrix(x, ncol = 16, byrow = TRUE)
+> ##D xx <- x
+> ##D xx[] <- encoded_text_to_latex(x, "UTF-8")
+> ##D xx <- apply(xx, 1, paste, collapse = "&")
+> ##D con <- file("test-utf8.tex", "w")
+> ##D writeLines(header, con)
+> ##D writeLines(paste(xx, "\\", sep = ""), con)
+> ##D writeLines(trailer, con)
+> ##D close(con)
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("fileutils")
+> ### * fileutils
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: fileutils
+> ### Title: File Utilities
+> ### Aliases: file_ext file_path_as_absolute file_path_sans_ext
+> ###   list_files_with_exts list_files_with_type
+> ### Keywords: file
+>
+> ### ** Examples
+>
+>
+> cleanEx()
+> nameEx("find_gs_cmd")
+> ### * find_gs_cmd
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: find_gs_cmd
+> ### Title: Find a GhostScript Executable
+> ### Aliases: find_gs_cmd R_GSCMD GSC
+>
+> ### ** Examples
+> ## Not run:
+> ##D ## Suppose a Solaris system has GhostScript 9.00 on the path and
+> ##D ## 9.07 in /opt/csw/bin.  Then one might set
+> ##D Sys.setenv(R_GSCMD = "/opt/csw/bin/gs")
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("getVignetteInfo")
+> ### * getVignetteInfo
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: getVignetteInfo
+> ### Title: Get Information on Installed Vignettes
+> ### Aliases: getVignetteInfo
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+>
+>
+>
+> cleanEx()
+> nameEx("loadRdMacros")
+> ### * loadRdMacros
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: loadRdMacros
+> ### Title: Load User-defined Rd Help System Macros
+> ### Aliases: loadRdMacros loadPkgRdMacros
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+> f <- tempfile()
+> writeLines(r"(
++ \newcommand{\Rlogo}{
++   \if{html}{\figure{Rlogo.svg}{options: width=100 alt="R logo"}}
++   \if{latex}{\figure{Rlogo.pdf}{options: width=0.5in}}
++ }
++ )", f)
+> m <- loadRdMacros(f)
+> ls(m)
+[1] "\\Rlogo"
+> ls(parent.env(parent.env(m)))
+character(0)
+> parse_Rd(textConnection(r"(\Rlogo)"), fragment = TRUE, macros = m)
+  \if{html}{\figure{Rlogo.svg}{options: width=100 alt="R logo"}}
+  \if{latex}{\figure{Rlogo.pdf}{options: width=0.5in}}
+>
+>
+>
+> cleanEx()
+> nameEx("makevars")
+> ### * makevars
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: makevars
+> ### Title: User and Site Compilation Variables
+> ### Aliases: makevars_user makevars_site
+> ### Keywords: utilities
+>
+> ### ** Examples
+> ## Don't show:
+> checkMV <- function(r)
++   stopifnot(is.character(r),
++             length(r) == 0 || (length(r) == 1 && file.exists(r)))
+> checkMV(makevars_user())
+> checkMV(makevars_site())
+> ## End(Don't show)
+>
+>
+>
+> cleanEx()
+> nameEx("md5sum")
+> ### * md5sum
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: md5sum
+> ### Title: Compute MD5 Checksums
+> ### Aliases: md5sum
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> as.vector(md5sum(dir(R.home(), pattern = "^COPY", full.names = TRUE)))
+[1] "eb723b61539feef013de476e68b5c50a"
+>
+>
+>
+> cleanEx()
+> nameEx("package_dependencies")
+> ### * package_dependencies
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: package_dependencies
+> ### Title: Computations on the Dependency Hierarchy of Packages
+> ### Aliases: package_dependencies
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+>
+>
+>
+> cleanEx()
+> nameEx("package_native_routine_registration_skeleton")
+> ### * package_native_routine_registration_skeleton
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: package_native_routine_registration_skeleton
+> ### Title: Write Skeleton for Adding Native Routine Registration to a
+> ###   Package
+> ### Aliases: package_native_routine_registration_skeleton
+>
+> ### ** Examples
+> ## Not run:
+> ##D ## with a completed splines/DESCRIPTION file,
+> ##D tools::package_native_routine_registration_skeleton('splines',,,FALSE)
+> ##D ## produces
+> ##D #include <R.h>
+> ##D #include <Rinternals.h>
+> ##D #include <stdlib.h> // for NULL
+> ##D #include <R_ext/Rdynload.h>
+> ##D
+> ##D /* FIXME:
+> ##D    Check these declarations against the C/Fortran source code.
+> ##D */
+> ##D
+> ##D /* .Call calls */
+> ##D extern SEXP spline_basis(SEXP, SEXP, SEXP, SEXP);
+> ##D extern SEXP spline_value(SEXP, SEXP, SEXP, SEXP, SEXP);
+> ##D
+> ##D static const R_CallMethodDef CallEntries[] = {
+> ##D     {"spline_basis", (DL_FUNC) &spline_basis, 4},
+> ##D     {"spline_value", (DL_FUNC) &spline_value, 5},
+> ##D     {NULL, NULL, 0}
+> ##D };
+> ##D
+> ##D void R_init_splines(DllInfo *dll)
+> ##D {
+> ##D     R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
+> ##D     R_useDynamicSymbols(dll, FALSE);
+> ##D }
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("parseLatex")
+> ### * parseLatex
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: parseLatex
+> ### Title: Experimental Functions to Work with LaTeX Code
+> ### Aliases: parseLatex deparseLatex latexToUtf8
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+>
+> cleanEx()
+> nameEx("print.via.format")
+> ### * print.via.format
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: .print.via.format
+> ### Title: Printing Utilities
+> ### Aliases: .print.via.format
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> ## The function is simply defined as
+>  function (x, ...) {
++     writeLines(format(x, ...))
++     invisible(x)
++  }
+function (x, ...)
+{
+    writeLines(format(x, ...))
+    invisible(x)
+}
+>
+> ## is used for simple print methods in R, and as prototype for new methods.
+>
+>
+>
+> cleanEx()
+> nameEx("pskill")
+> ### * pskill
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: pskill
+> ### Title: Kill a Process
+> ### Aliases: pskill SIGHUP SIGINT SIGQUIT SIGKILL SIGTERM SIGSTOP SIGTSTP
+> ###   SIGCONT SIGCHLD SIGUSR1 SIGUSR2
+> ### Keywords: utilities
+>
+> ### ** Examples
+> ## Not run:
+> ##D pskill(c(237, 245), SIGKILL)
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("showNonASCII")
+> ### * showNonASCII
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: showNonASCII
+> ### Title: Pick Out Non-ASCII Characters
+> ### Aliases: showNonASCII showNonASCIIfile
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> out <- c(
++ "fa\xE7ile test of showNonASCII():",
++ "\\details{",
++ "   This is a good line",
++ "   This has an \xfcmlaut in it.",
++ "   OK again.",
++ "}")
+> f <- tempfile()
+> cat(out, file = f, sep = "\n")
+>
+> showNonASCIIfile(f)
+1: fa<e7>ile test of showNonASCII():
+4:    This has an <fc>mlaut in it.
+> unlink(f)
+>
+>
+>
+> cleanEx()
+> nameEx("toHTML")
+> ### * toHTML
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: toHTML
+> ### Title: Display an Object in HTML
+> ### Aliases: toHTML toHTML.packageIQR toHTML.news_db
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+> cat(toHTML(demo(package = "base")), sep = "\n")
+<!DOCTYPE html>
+<html>
+<head><title>R: R</title>
+<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+<link rel="stylesheet" type="text/css" href="/doc/html/R.css" />
+</head><body><div class="container">
+<h1> R
+<img class="toplogo" src="/doc/html/Rlogo.svg" alt="[R logo]" />
+</h1>
+<hr/>
+<div style="text-align: center;">
+<a href="/doc/html/index.html"><img class="arrow" src="/doc/html/up.jpg" alt="[Top]" /></a>
+</div>
+<h2>Demos in package &lsquo;base&rsquo;</h2>
+<table cols="2" style="width: 100%;">
+<tr>
+ <td style="text-align: left; vertical-align: top; width: 10%;">
+error.catching
+ </td>
+ <td style="text-align: left; vertical-align: top; width: 90%;">
+More examples on catching and handling errors
+ </td>
+</tr>
+<tr>
+ <td style="text-align: left; vertical-align: top; width: 10%;">
+is.things
+ </td>
+ <td style="text-align: left; vertical-align: top; width: 90%;">
+Explore some properties of R objects and is.FOO() functions. Not for newbies!
+ </td>
+</tr>
+<tr>
+ <td style="text-align: left; vertical-align: top; width: 10%;">
+recursion
+ </td>
+ <td style="text-align: left; vertical-align: top; width: 90%;">
+Using recursion for adaptive integration
+ </td>
+</tr>
+<tr>
+ <td style="text-align: left; vertical-align: top; width: 10%;">
+scoping
+ </td>
+ <td style="text-align: left; vertical-align: top; width: 90%;">
+An illustration of lexical scoping.
+ </td>
+</tr>
+</table>
+<p>
+</p>
+</div></body></html>
+>
+>
+>
+> cleanEx()
+> nameEx("undoc")
+> ### * undoc
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: undoc
+> ### Title: Find Undocumented Objects
+> ### Aliases: undoc print.undoc
+> ### Keywords: documentation
+>
+> ### ** Examples
+>
+> undoc("tools")                  # Undocumented objects in 'tools'
+>
+>
+>
+> cleanEx()
+> nameEx("updatePACKAGES")
+> ### * updatePACKAGES
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: update_PACKAGES
+> ### Title: Update Existing PACKAGES Files
+> ### Aliases: update_PACKAGES
+> ### Keywords: file utilities
+>
+> ### ** Examples
+>
+> ## Not run:
+> ##D write_PACKAGES("c:/myFolder/myRepository") # on Windows
+> ##D update_PACKAGES("c:/myFolder/myRepository") # on Windows
+> ##D write_PACKAGES("/pub/RWin/bin/windows/contrib/2.9",
+> ##D type = "win.binary") # on Linux
+> ##D update_PACKAGES("/pub/RWin/bin/windows/contrib/2.9",
+> ##D type = "win.binary") # on Linux
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("userdir")
+> ### * userdir
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: userdir
+> ### Title: R User Directories
+> ### Aliases: R_user_dir
+>
+> ### ** Examples
+>
+> ## IGNORE_RDIFF_BEGIN
+> R_user_dir("FOO", "cache")
+[1] "/Users/ripley/Library/Caches/org.R-project.R/R/FOO"
+> ## IGNORE_RDIFF_END
+>
+>
+>
+> cleanEx()
+> nameEx("vignetteEngine")
+> ### * vignetteEngine
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: vignetteEngine
+> ### Title: Set or Get a Vignette Processing Engine
+> ### Aliases: vignetteEngine
+> ### Keywords: utilities documentation
+>
+> ### ** Examples
+>
+> str(vignetteEngine("Sweave"))
+List of 6
+ $ name   : chr "Sweave"
+ $ package: chr "utils"
+ $ pattern: chr "[.][rRsS](nw|tex)$"
+ $ weave  :function (...)
+ $ tangle :function (...)
+ $ aspell :List of 2
+  ..$ filter : chr "Sweave"
+  ..$ control: chr "-t"
+>
+>
+>
+> cleanEx()
+> nameEx("vignetteInfo")
+> ### * vignetteInfo
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: vignetteInfo
+> ### Title: Basic Information about a Vignette
+> ### Aliases: vignetteInfo
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+>   gridEx <- system.file("doc", "grid.Rnw", package = "grid")
+>   vi <- vignetteInfo(gridEx)
+>   str(vi)
+List of 5
+ $ file    : chr "grid.Rnw"
+ $ title   : chr "Introduction to grid"
+ $ depends : chr(0)
+ $ keywords: chr(0)
+ $ engine  : chr "utils::Sweave"
+>
+>
+>
+> cleanEx()
+> nameEx("writePACKAGES")
+> ### * writePACKAGES
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: write_PACKAGES
+> ### Title: Generate PACKAGES Files
+> ### Aliases: write_PACKAGES
+> ### Keywords: file utilities
+>
+> ### ** Examples
+>
+> ## Not run:
+> ##D write_PACKAGES("c:/myFolder/myRepository")  # on Windows
+> ##D write_PACKAGES("/pub/RWin/bin/windows/contrib/2.9",
+> ##D                type = "win.binary")  # on Linux
+> ## End(Not run)
+>
+>
+> cleanEx()
+> nameEx("xgettext")
+> ### * xgettext
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: xgettext
+> ### Title: Extract Translatable Messages from R Files in a Package
+> ### Aliases: xgettext xngettext xgettext2pot
+> ### Keywords: utilities
+>
+> ### ** Examples
+> ## Not run:
+> ##D ## in a source-directory build (not typical!) of R;
+> ##D ## otherwise, download and unpack the R sources, and replace
+> ##D ## R.home()  by  "<my_path_to_source_R>" :
+> ##D xgettext(file.path(R.home(), "src", "library", "splines"))
+> ## End(Not run)
+>
+> ## Create source package-like  <tmp>/R/foo.R  and get text from it:
+> tmpPkg <- tempdir()
+> tmpRDir <- file.path(tmpPkg, "R")
+> dir.create(tmpRDir, showWarnings = FALSE)
+> fnChar <- paste(sep = "\n",
++   "foo <- function(x) {",
++   "  if (x < -1)  stop('too small')",
++   "  # messages unduplicated (not so for ngettext)",
++   "  if (x < -.5) stop('too small')",
++   "  if (x < 0) {",
++   "    warning(",
++   "      'sqrt(x) is', sqrt(as.complex(x)),",
++   "      ', which may be too small'",
++   "    )",
++   "  }",
++   "  # calls with domain=NA are skipped",
++   "  if (x == 0) cat(gettext('x is 0!\n', domain=NA))",
++   "  # gettext strings may be ignored due to 'outer' domain=NA",
++   "  if (x > 10) stop('x is ', gettextf('%.2f', x), domain=NA)",
++   "  x",
++   "}")
+>
+> writeLines(fnChar, con = file.path(tmpRDir, "foo.R"))
+>
+> ## [[1]] : suppressing (tmpfile) name to make example Rdiff-able
+> xgettext(tmpPkg, asCall=TRUE )[[1]] # default; shows  ' sqrt(as.complex(x)) '
+too small
+sqrt(x) is
+sqrt(as.complex(x))
+, which may be too small
+> xgettext(tmpPkg, asCall=FALSE)[[1]] # doesn't ; but then ' %.2f '
+too small
+sqrt(x) is
+, which may be too small
+%.2f
+>
+> unlink(tmpRDir, recursive=TRUE)
+>
+>
+>
+> ### * <FOOTER>
+> ###
+> cleanEx()
+> options(digits = 7L)
+> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
+Time elapsed:  0.135 0.011 0.147 0 0
+> grDevices::dev.off()
+null device
+          1
+> ###
+> ### Local variables: ***
+> ### mode: outline-minor ***
+> ### outline-regexp: "\\(> \\)?### [*]+" ***
+> ### End: ***
+> quit('no')