@opentrons/shared-data 0.0.0-alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (669) hide show
  1. package/Makefile +100 -0
  2. package/command/schemas/7.json +3301 -0
  3. package/command/schemas/8.json +3632 -0
  4. package/command/types/annotation.ts +37 -0
  5. package/command/types/calibration.ts +84 -0
  6. package/command/types/gantry.ts +176 -0
  7. package/command/types/incidental.ts +21 -0
  8. package/command/types/index.ts +77 -0
  9. package/command/types/module.ts +307 -0
  10. package/command/types/pipetting.ts +228 -0
  11. package/command/types/setup.ts +199 -0
  12. package/command/types/timing.ts +58 -0
  13. package/commandAnnotation/schemas/1.json +74 -0
  14. package/commandAnnotation/types/index.ts +19 -0
  15. package/deck/definitions/3/ot2_short_trash.json +477 -0
  16. package/deck/definitions/3/ot2_standard.json +477 -0
  17. package/deck/definitions/3/ot3_standard.json +989 -0
  18. package/deck/definitions/4/ot2_short_trash.json +403 -0
  19. package/deck/definitions/4/ot2_standard.json +403 -0
  20. package/deck/definitions/4/ot3_standard.json +597 -0
  21. package/deck/fixtures/3/deckExample.json +481 -0
  22. package/deck/index.ts +1 -0
  23. package/deck/schemas/1.json +240 -0
  24. package/deck/schemas/2.json +250 -0
  25. package/deck/schemas/3.json +297 -0
  26. package/deck/schemas/4.json +321 -0
  27. package/deck/types/schemaV4.ts +84 -0
  28. package/errors/definitions/1/errors.json +222 -0
  29. package/errors/schemas/1.json +50 -0
  30. package/gripper/definitions/1/gripperV1.1.json +28 -0
  31. package/gripper/definitions/1/gripperV1.2.json +28 -0
  32. package/gripper/definitions/1/gripperV1.json +27 -0
  33. package/gripper/schemas/1.json +181 -0
  34. package/js/__tests__/__snapshots__/pipettes.test.ts.snap +5969 -0
  35. package/js/__tests__/deckSchemas.test.ts +87 -0
  36. package/js/__tests__/errors.test.js +21 -0
  37. package/js/__tests__/getAreSlotsAdjacent.test.ts +128 -0
  38. package/js/__tests__/getWellNamePerMultiTip.test.ts +162 -0
  39. package/js/__tests__/labwareDefQuirks.test.ts +37 -0
  40. package/js/__tests__/labwareDefSchemaV1.test.ts +82 -0
  41. package/js/__tests__/labwareDefSchemaV2.test.ts +298 -0
  42. package/js/__tests__/moduleAccessors.test.ts +50 -0
  43. package/js/__tests__/moduleSpecsSchema.test.ts +77 -0
  44. package/js/__tests__/pipetteSchemaV2.test.ts +107 -0
  45. package/js/__tests__/pipetteSpecSchemas.test.ts +48 -0
  46. package/js/__tests__/pipettes.test.ts +58 -0
  47. package/js/__tests__/protocolSchemaV4.test.ts +137 -0
  48. package/js/__tests__/protocolSchemaV5.test.ts +137 -0
  49. package/js/__tests__/protocolSchemaV6.test.ts +132 -0
  50. package/js/__tests__/protocolSchemaV7.test.ts +64 -0
  51. package/js/__tests__/protocolValidation.test.ts +83 -0
  52. package/js/__tests__/sortWells.test.ts +40 -0
  53. package/js/__tests__/splitWellsOnColumn.test.ts +21 -0
  54. package/js/__tests__/validateErrors.test.js +34 -0
  55. package/js/constants.ts +336 -0
  56. package/js/cypressUtils.ts +35 -0
  57. package/js/errors.ts +33 -0
  58. package/js/fixtures.ts +161 -0
  59. package/js/getLabware.ts +162 -0
  60. package/js/gripper.ts +29 -0
  61. package/js/helpers/__tests__/getAdapterName.test.ts +31 -0
  62. package/js/helpers/__tests__/getDeckDefFromLoadedLabware.test.ts +12 -0
  63. package/js/helpers/__tests__/getVectorDifference.test.ts +25 -0
  64. package/js/helpers/__tests__/getVectorSum.test.ts +21 -0
  65. package/js/helpers/__tests__/labwareInference.test.ts +84 -0
  66. package/js/helpers/__tests__/orderWells.test.ts +87 -0
  67. package/js/helpers/__tests__/parseProtocolData.test.ts +165 -0
  68. package/js/helpers/__tests__/volume.test.ts +108 -0
  69. package/js/helpers/__tests__/wellSets.test.ts +352 -0
  70. package/js/helpers/get96Channel384WellPlateWells.ts +44 -0
  71. package/js/helpers/getLoadedLabwareDefinitionsByUri.ts +30 -0
  72. package/js/helpers/getModuleVizDims.ts +118 -0
  73. package/js/helpers/getOccludedSlotCountForModule.ts +13 -0
  74. package/js/helpers/getVectorDifference.ts +12 -0
  75. package/js/helpers/getVectorSum.ts +12 -0
  76. package/js/helpers/getWellNamePerMultiTip.ts +86 -0
  77. package/js/helpers/getWellTotalVolume.ts +16 -0
  78. package/js/helpers/index.ts +346 -0
  79. package/js/helpers/labwareInference.ts +92 -0
  80. package/js/helpers/orderWells.ts +69 -0
  81. package/js/helpers/parseProtocolData.ts +141 -0
  82. package/js/helpers/volume.ts +35 -0
  83. package/js/helpers/wellIsRect.ts +6 -0
  84. package/js/helpers/wellSets.ts +150 -0
  85. package/js/index.ts +14 -0
  86. package/js/labwareTools/__tests__/__snapshots__/createIrregularLabware.test.ts.snap +3 -0
  87. package/js/labwareTools/__tests__/__snapshots__/createLabware.test.ts.snap +3 -0
  88. package/js/labwareTools/__tests__/createDefaultDisplayName.test.ts +111 -0
  89. package/js/labwareTools/__tests__/createIrregularLabware.test.ts +226 -0
  90. package/js/labwareTools/__tests__/createLabware.test.ts +147 -0
  91. package/js/labwareTools/index.ts +452 -0
  92. package/js/modules.ts +97 -0
  93. package/js/pipettes.ts +89 -0
  94. package/js/protocols.ts +290 -0
  95. package/js/schema.ts +80 -0
  96. package/js/scripts/build.js +32 -0
  97. package/js/scripts/generateDeckLayersFromSVG.js +46 -0
  98. package/js/titleCase.ts +30 -0
  99. package/js/types.ts +600 -0
  100. package/labware/definitions/1/12-well-plate.json +147 -0
  101. package/labware/definitions/1/24-vial-rack.json +281 -0
  102. package/labware/definitions/1/24-well-plate.json +281 -0
  103. package/labware/definitions/1/384-plate.json +4667 -0
  104. package/labware/definitions/1/48-vial-plate.json +547 -0
  105. package/labware/definitions/1/48-well-plate.json +547 -0
  106. package/labware/definitions/1/5ml-3x4.json +147 -0
  107. package/labware/definitions/1/6-well-plate.json +80 -0
  108. package/labware/definitions/1/96-PCR-flat.json +1079 -0
  109. package/labware/definitions/1/96-PCR-tall.json +1079 -0
  110. package/labware/definitions/1/96-deep-well.json +1079 -0
  111. package/labware/definitions/1/96-flat.json +1079 -0
  112. package/labware/definitions/1/96-well-plate-20mm.json +1079 -0
  113. package/labware/definitions/1/MALDI-plate.json +4282 -0
  114. package/labware/definitions/1/PCR-strip-tall.json +1079 -0
  115. package/labware/definitions/1/T25-flask.json +20 -0
  116. package/labware/definitions/1/T75-flask.json +20 -0
  117. package/labware/definitions/1/alum-block-pcr-strips.json +188 -0
  118. package/labware/definitions/1/biorad-hardshell-96-PCR.json +1079 -0
  119. package/labware/definitions/1/e-gelgol.json +1078 -0
  120. package/labware/definitions/1/fixed-trash.json +19 -0
  121. package/labware/definitions/1/hampton-1ml-deep-block.json +1078 -0
  122. package/labware/definitions/1/opentrons-aluminum-block-2ml-eppendorf.json +281 -0
  123. package/labware/definitions/1/opentrons-aluminum-block-2ml-screwcap.json +281 -0
  124. package/labware/definitions/1/opentrons-aluminum-block-96-PCR-plate.json +1079 -0
  125. package/labware/definitions/1/opentrons-aluminum-block-PCR-strips-200ul.json +1079 -0
  126. package/labware/definitions/1/opentrons-tiprack-10ul.json +986 -0
  127. package/labware/definitions/1/opentrons-tiprack-300ul.json +986 -0
  128. package/labware/definitions/1/opentrons-tuberack-1.5ml-eppendorf.json +281 -0
  129. package/labware/definitions/1/opentrons-tuberack-15_50ml.json +125 -0
  130. package/labware/definitions/1/opentrons-tuberack-15ml.json +181 -0
  131. package/labware/definitions/1/opentrons-tuberack-2ml-eppendorf.json +281 -0
  132. package/labware/definitions/1/opentrons-tuberack-2ml-screwcap.json +281 -0
  133. package/labware/definitions/1/opentrons-tuberack-50ml.json +80 -0
  134. package/labware/definitions/1/point.json +18 -0
  135. package/labware/definitions/1/rigaku-compact-crystallization-plate.json +2146 -0
  136. package/labware/definitions/1/small_vial_rack_16x45.json +280 -0
  137. package/labware/definitions/1/tall-fixed-trash.json +19 -0
  138. package/labware/definitions/1/tiprack-1000ul-H.json +503 -0
  139. package/labware/definitions/1/tiprack-1000ul-chem.json +1034 -0
  140. package/labware/definitions/1/tiprack-1000ul.json +986 -0
  141. package/labware/definitions/1/tiprack-10ul-H.json +503 -0
  142. package/labware/definitions/1/tiprack-10ul.json +986 -0
  143. package/labware/definitions/1/tiprack-200ul.json +986 -0
  144. package/labware/definitions/1/trash-box.json +20 -0
  145. package/labware/definitions/1/trough-12row-short.json +143 -0
  146. package/labware/definitions/1/trough-12row.json +143 -0
  147. package/labware/definitions/1/trough-1row-25ml.json +21 -0
  148. package/labware/definitions/1/tube-rack-.75ml.json +281 -0
  149. package/labware/definitions/1/tube-rack-15_50ml.json +125 -0
  150. package/labware/definitions/1/tube-rack-2ml-9x9.json +911 -0
  151. package/labware/definitions/1/tube-rack-2ml.json +281 -0
  152. package/labware/definitions/1/tube-rack-5ml-96.json +1079 -0
  153. package/labware/definitions/1/tube-rack-80well.json +907 -0
  154. package/labware/definitions/1/wheaton_vial_rack.json +565 -0
  155. package/labware/definitions/2/agilent_1_reservoir_290ml/1.json +54 -0
  156. package/labware/definitions/2/appliedbiosystemsmicroamp_384_wellplate_40ul/1.json +4320 -0
  157. package/labware/definitions/2/armadillo_96_wellplate_200ul_pcr_full_skirt/1.json +1019 -0
  158. package/labware/definitions/2/armadillo_96_wellplate_200ul_pcr_full_skirt/2.json +1045 -0
  159. package/labware/definitions/2/axygen_1_reservoir_90ml/1.json +56 -0
  160. package/labware/definitions/2/biorad_384_wellplate_50ul/1.json +4329 -0
  161. package/labware/definitions/2/biorad_384_wellplate_50ul/2.json +4331 -0
  162. package/labware/definitions/2/biorad_96_wellplate_200ul_pcr/1.json +1020 -0
  163. package/labware/definitions/2/biorad_96_wellplate_200ul_pcr/2.json +1036 -0
  164. package/labware/definitions/2/corning_12_wellplate_6.9ml_flat/1.json +171 -0
  165. package/labware/definitions/2/corning_12_wellplate_6.9ml_flat/2.json +180 -0
  166. package/labware/definitions/2/corning_24_wellplate_3.4ml_flat/1.json +293 -0
  167. package/labware/definitions/2/corning_24_wellplate_3.4ml_flat/2.json +300 -0
  168. package/labware/definitions/2/corning_384_wellplate_112ul_flat/1.json +4703 -0
  169. package/labware/definitions/2/corning_384_wellplate_112ul_flat/2.json +4717 -0
  170. package/labware/definitions/2/corning_48_wellplate_1.6ml_flat/1.json +535 -0
  171. package/labware/definitions/2/corning_48_wellplate_1.6ml_flat/2.json +544 -0
  172. package/labware/definitions/2/corning_6_wellplate_16.8ml_flat/1.json +103 -0
  173. package/labware/definitions/2/corning_6_wellplate_16.8ml_flat/2.json +110 -0
  174. package/labware/definitions/2/corning_96_wellplate_360ul_flat/1.json +1049 -0
  175. package/labware/definitions/2/corning_96_wellplate_360ul_flat/2.json +1063 -0
  176. package/labware/definitions/2/eppendorf_96_tiprack_1000ul_eptips/1.json +1019 -0
  177. package/labware/definitions/2/eppendorf_96_tiprack_10ul_eptips/1.json +1019 -0
  178. package/labware/definitions/2/geb_96_tiprack_1000ul/1.json +1017 -0
  179. package/labware/definitions/2/geb_96_tiprack_10ul/1.json +1017 -0
  180. package/labware/definitions/2/nest_12_reservoir_15ml/1.json +190 -0
  181. package/labware/definitions/2/nest_1_reservoir_195ml/1.json +54 -0
  182. package/labware/definitions/2/nest_1_reservoir_195ml/2.json +56 -0
  183. package/labware/definitions/2/nest_1_reservoir_290ml/1.json +54 -0
  184. package/labware/definitions/2/nest_96_wellplate_100ul_pcr_full_skirt/1.json +1018 -0
  185. package/labware/definitions/2/nest_96_wellplate_100ul_pcr_full_skirt/2.json +1039 -0
  186. package/labware/definitions/2/nest_96_wellplate_200ul_flat/1.json +1017 -0
  187. package/labware/definitions/2/nest_96_wellplate_200ul_flat/2.json +1031 -0
  188. package/labware/definitions/2/nest_96_wellplate_2ml_deep/1.json +1121 -0
  189. package/labware/definitions/2/nest_96_wellplate_2ml_deep/2.json +1137 -0
  190. package/labware/definitions/2/opentrons_10_tuberack_falcon_4x50ml_6x15ml_conical/1.json +164 -0
  191. package/labware/definitions/2/opentrons_10_tuberack_falcon_4x50ml_6x15ml_conical_acrylic/1.json +162 -0
  192. package/labware/definitions/2/opentrons_10_tuberack_nest_4x50ml_6x15ml_conical/1.json +160 -0
  193. package/labware/definitions/2/opentrons_15_tuberack_falcon_15ml_conical/1.json +211 -0
  194. package/labware/definitions/2/opentrons_15_tuberack_nest_15ml_conical/1.json +209 -0
  195. package/labware/definitions/2/opentrons_1_trash_1100ml_fixed/1.json +50 -0
  196. package/labware/definitions/2/opentrons_1_trash_3200ml_fixed/1.json +50 -0
  197. package/labware/definitions/2/opentrons_1_trash_850ml_fixed/1.json +50 -0
  198. package/labware/definitions/2/opentrons_24_aluminumblock_generic_2ml_screwcap/1.json +300 -0
  199. package/labware/definitions/2/opentrons_24_aluminumblock_generic_2ml_screwcap/2.json +301 -0
  200. package/labware/definitions/2/opentrons_24_aluminumblock_nest_0.5ml_screwcap/1.json +299 -0
  201. package/labware/definitions/2/opentrons_24_aluminumblock_nest_1.5ml_screwcap/1.json +299 -0
  202. package/labware/definitions/2/opentrons_24_aluminumblock_nest_1.5ml_snapcap/1.json +301 -0
  203. package/labware/definitions/2/opentrons_24_aluminumblock_nest_2ml_screwcap/1.json +299 -0
  204. package/labware/definitions/2/opentrons_24_aluminumblock_nest_2ml_snapcap/1.json +301 -0
  205. package/labware/definitions/2/opentrons_24_tuberack_eppendorf_1.5ml_safelock_snapcap/1.json +312 -0
  206. package/labware/definitions/2/opentrons_24_tuberack_eppendorf_2ml_safelock_snapcap/1.json +311 -0
  207. package/labware/definitions/2/opentrons_24_tuberack_eppendorf_2ml_safelock_snapcap_acrylic/1.json +309 -0
  208. package/labware/definitions/2/opentrons_24_tuberack_generic_0.75ml_snapcap_acrylic/1.json +298 -0
  209. package/labware/definitions/2/opentrons_24_tuberack_generic_2ml_screwcap/1.json +300 -0
  210. package/labware/definitions/2/opentrons_24_tuberack_nest_0.5ml_screwcap/1.json +300 -0
  211. package/labware/definitions/2/opentrons_24_tuberack_nest_1.5ml_screwcap/1.json +300 -0
  212. package/labware/definitions/2/opentrons_24_tuberack_nest_1.5ml_snapcap/1.json +302 -0
  213. package/labware/definitions/2/opentrons_24_tuberack_nest_2ml_screwcap/1.json +300 -0
  214. package/labware/definitions/2/opentrons_24_tuberack_nest_2ml_snapcap/1.json +302 -0
  215. package/labware/definitions/2/opentrons_40_aluminumblock_eppendorf_24x2ml_safelock_snapcap_generic_16x0.2ml_pcr_strip/1.json +481 -0
  216. package/labware/definitions/2/opentrons_6_tuberack_falcon_50ml_conical/1.json +112 -0
  217. package/labware/definitions/2/opentrons_6_tuberack_nest_50ml_conical/1.json +110 -0
  218. package/labware/definitions/2/opentrons_96_aluminumblock_biorad_wellplate_200ul/1.json +1029 -0
  219. package/labware/definitions/2/opentrons_96_aluminumblock_generic_pcr_strip_200ul/1.json +1026 -0
  220. package/labware/definitions/2/opentrons_96_aluminumblock_generic_pcr_strip_200ul/2.json +1027 -0
  221. package/labware/definitions/2/opentrons_96_aluminumblock_nest_wellplate_100ul/1.json +1027 -0
  222. package/labware/definitions/2/opentrons_96_deep_well_adapter/1.json +41 -0
  223. package/labware/definitions/2/opentrons_96_deep_well_adapter_nest_wellplate_2ml_deep/1.json +1121 -0
  224. package/labware/definitions/2/opentrons_96_filtertiprack_1000ul/1.json +1017 -0
  225. package/labware/definitions/2/opentrons_96_filtertiprack_10ul/1.json +1017 -0
  226. package/labware/definitions/2/opentrons_96_filtertiprack_200ul/1.json +1017 -0
  227. package/labware/definitions/2/opentrons_96_filtertiprack_20ul/1.json +1017 -0
  228. package/labware/definitions/2/opentrons_96_flat_bottom_adapter/1.json +41 -0
  229. package/labware/definitions/2/opentrons_96_flat_bottom_adapter_nest_wellplate_200ul_flat/1.json +1027 -0
  230. package/labware/definitions/2/opentrons_96_pcr_adapter/1.json +1032 -0
  231. package/labware/definitions/2/opentrons_96_pcr_adapter_armadillo_wellplate_200ul/1.json +1027 -0
  232. package/labware/definitions/2/opentrons_96_pcr_adapter_nest_wellplate_100ul_pcr_full_skirt/1.json +1025 -0
  233. package/labware/definitions/2/opentrons_96_tiprack_1000ul/1.json +1019 -0
  234. package/labware/definitions/2/opentrons_96_tiprack_10ul/1.json +1019 -0
  235. package/labware/definitions/2/opentrons_96_tiprack_20ul/1.json +1019 -0
  236. package/labware/definitions/2/opentrons_96_tiprack_300ul/1.json +1019 -0
  237. package/labware/definitions/2/opentrons_96_well_aluminum_block/1.json +1032 -0
  238. package/labware/definitions/2/opentrons_96_wellplate_200ul_pcr_full_skirt/1.json +1019 -0
  239. package/labware/definitions/2/opentrons_96_wellplate_200ul_pcr_full_skirt/2.json +1045 -0
  240. package/labware/definitions/2/opentrons_aluminum_flat_bottom_plate/1.json +41 -0
  241. package/labware/definitions/2/opentrons_calibration_adapter_heatershaker_module/1.json +62 -0
  242. package/labware/definitions/2/opentrons_calibration_adapter_temperature_module/1.json +62 -0
  243. package/labware/definitions/2/opentrons_calibration_adapter_thermocycler_module/1.json +69 -0
  244. package/labware/definitions/2/opentrons_calibrationblock_short_side_left/1.json +71 -0
  245. package/labware/definitions/2/opentrons_calibrationblock_short_side_right/1.json +71 -0
  246. package/labware/definitions/2/opentrons_flex_96_filtertiprack_1000ul/1.json +1026 -0
  247. package/labware/definitions/2/opentrons_flex_96_filtertiprack_200ul/1.json +1026 -0
  248. package/labware/definitions/2/opentrons_flex_96_filtertiprack_50ul/1.json +1026 -0
  249. package/labware/definitions/2/opentrons_flex_96_tiprack_1000ul/1.json +1026 -0
  250. package/labware/definitions/2/opentrons_flex_96_tiprack_200ul/1.json +1026 -0
  251. package/labware/definitions/2/opentrons_flex_96_tiprack_50ul/1.json +1026 -0
  252. package/labware/definitions/2/opentrons_flex_96_tiprack_adapter/1.json +41 -0
  253. package/labware/definitions/2/opentrons_universal_flat_adapter/1.json +151 -0
  254. package/labware/definitions/2/opentrons_universal_flat_adapter_corning_384_wellplate_112ul_flat/1.json +4710 -0
  255. package/labware/definitions/2/thermoscientificnunc_96_wellplate_1300ul/1.json +1019 -0
  256. package/labware/definitions/2/thermoscientificnunc_96_wellplate_2000ul/1.json +1019 -0
  257. package/labware/definitions/2/tipone_96_tiprack_200ul/1.json +1017 -0
  258. package/labware/definitions/2/usascientific_12_reservoir_22ml/1.json +192 -0
  259. package/labware/definitions/2/usascientific_96_wellplate_2.4ml_deep/1.json +1116 -0
  260. package/labware/fixtures/2/fixture_12_trough.json +188 -0
  261. package/labware/fixtures/2/fixture_12_trough_v2.json +188 -0
  262. package/labware/fixtures/2/fixture_24_tuberack.json +295 -0
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  516. package/pipette/schemas/2/pipetteLiquidPropertiesSchema.json +120 -0
  517. package/pipette/schemas/2/pipettePropertiesSchema.json +287 -0
  518. package/protocol/README.md +12 -0
  519. package/protocol/fixtures/1/simple.json +73 -0
  520. package/protocol/fixtures/3/simple.json +1307 -0
  521. package/protocol/fixtures/3/testAllAtomicSingleV3.json +2281 -0
  522. package/protocol/fixtures/3/testTrickyLabwareV3.json +2577 -0
  523. package/protocol/fixtures/3/unusedPipette.json +1311 -0
  524. package/protocol/fixtures/4/pipetteMultiChannelProtocolV4.json +2561 -0
  525. package/protocol/fixtures/4/simpleV4.json +1309 -0
  526. package/protocol/fixtures/4/testMagneticModuleV4.json +2156 -0
  527. package/protocol/fixtures/4/testModulesProtocol.json +2561 -0
  528. package/protocol/fixtures/4/testTemperatureModuleV4.json +1480 -0
  529. package/protocol/fixtures/4/testThermocyclerModuleV4.json +2182 -0
  530. package/protocol/fixtures/4/transferSettings.json +5482 -0
  531. package/protocol/fixtures/5/multipleTipracks.json +2476 -0
  532. package/protocol/fixtures/5/multipleTipracksWithTC.json +3544 -0
  533. package/protocol/fixtures/5/simpleV5.json +1328 -0
  534. package/protocol/fixtures/6/heaterShakerCommands.json +1422 -0
  535. package/protocol/fixtures/6/heaterShakerCommandsWithResultsKey.json +4725 -0
  536. package/protocol/fixtures/6/multipleTempModules.json +11060 -0
  537. package/protocol/fixtures/6/multipleTipracks.json +5020 -0
  538. package/protocol/fixtures/6/multipleTipracksWithTC.json +7057 -0
  539. package/protocol/fixtures/6/oneTiprack.json +1388 -0
  540. package/protocol/fixtures/6/simpleV6.json +1494 -0
  541. package/protocol/fixtures/6/tempAndMagModuleCommands.json +1413 -0
  542. package/protocol/fixtures/6/transferSettings.json +11060 -0
  543. package/protocol/fixtures/7/moveLabware.json +1303 -0
  544. package/protocol/fixtures/7/simpleV7.json +1496 -0
  545. package/protocol/fixtures/8/moveLabware8.json +1309 -0
  546. package/protocol/fixtures/8/moveLabwareFlex8.json +1309 -0
  547. package/protocol/fixtures/8/simpleFlexV8.json +1475 -0
  548. package/protocol/fixtures/8/simpleV8.json +1473 -0
  549. package/protocol/index.ts +32 -0
  550. package/protocol/schemas/1.json +389 -0
  551. package/protocol/schemas/2.json +416 -0
  552. package/protocol/schemas/3.json +360 -0
  553. package/protocol/schemas/4.json +662 -0
  554. package/protocol/schemas/5.json +701 -0
  555. package/protocol/schemas/6.json +1225 -0
  556. package/protocol/schemas/7.json +290 -0
  557. package/protocol/schemas/8.json +157 -0
  558. package/protocol/types/schemaV1.ts +108 -0
  559. package/protocol/types/schemaV3.ts +131 -0
  560. package/protocol/types/schemaV4.ts +146 -0
  561. package/protocol/types/schemaV5.ts +34 -0
  562. package/protocol/types/schemaV5Addendum.ts +27 -0
  563. package/protocol/types/schemaV6/command/gantry.ts +146 -0
  564. package/protocol/types/schemaV6/command/index.ts +65 -0
  565. package/protocol/types/schemaV6/command/module.ts +302 -0
  566. package/protocol/types/schemaV6/command/pipetting.ts +114 -0
  567. package/protocol/types/schemaV6/command/setup.ts +127 -0
  568. package/protocol/types/schemaV6/command/timing.ts +58 -0
  569. package/protocol/types/schemaV6/index.ts +122 -0
  570. package/protocol/types/schemaV7/command/annotation.ts +37 -0
  571. package/protocol/types/schemaV7/command/calibration.ts +84 -0
  572. package/protocol/types/schemaV7/command/gantry.ts +154 -0
  573. package/protocol/types/schemaV7/command/incidental.ts +21 -0
  574. package/protocol/types/schemaV7/command/index.ts +76 -0
  575. package/protocol/types/schemaV7/command/module.ts +307 -0
  576. package/protocol/types/schemaV7/command/pipetting.ts +173 -0
  577. package/protocol/types/schemaV7/command/setup.ts +158 -0
  578. package/protocol/types/schemaV7/command/timing.ts +58 -0
  579. package/protocol/types/schemaV7/index.ts +98 -0
  580. package/protocol/types/schemaV8/index.ts +160 -0
  581. package/python/.coveragerc +4 -0
  582. package/python/.flake8 +32 -0
  583. package/python/Config.in +10 -0
  584. package/python/Makefile +134 -0
  585. package/python/Pipfile +28 -0
  586. package/python/Pipfile.lock +645 -0
  587. package/python/buildroot.mk +30 -0
  588. package/python/mypy.ini +41 -0
  589. package/python/opentrons_shared_data/__init__.py +17 -0
  590. package/python/opentrons_shared_data/_version.py +20 -0
  591. package/python/opentrons_shared_data/command/__init__.py +52 -0
  592. package/python/opentrons_shared_data/deck/__init__.py +96 -0
  593. package/python/opentrons_shared_data/deck/dev_types.py +180 -0
  594. package/python/opentrons_shared_data/errors/__init__.py +30 -0
  595. package/python/opentrons_shared_data/errors/categories.py +60 -0
  596. package/python/opentrons_shared_data/errors/codes.py +108 -0
  597. package/python/opentrons_shared_data/errors/exceptions.py +915 -0
  598. package/python/opentrons_shared_data/gripper/__init__.py +63 -0
  599. package/python/opentrons_shared_data/gripper/constants.py +5 -0
  600. package/python/opentrons_shared_data/gripper/gripper_definition.py +101 -0
  601. package/python/opentrons_shared_data/labware/__init__.py +22 -0
  602. package/python/opentrons_shared_data/labware/constants.py +7 -0
  603. package/python/opentrons_shared_data/labware/dev_types.py +140 -0
  604. package/python/opentrons_shared_data/labware/labware_definition.py +328 -0
  605. package/python/opentrons_shared_data/load.py +57 -0
  606. package/python/opentrons_shared_data/module/__init__.py +74 -0
  607. package/python/opentrons_shared_data/module/dev_types.py +141 -0
  608. package/python/opentrons_shared_data/pipette/__init__.py +107 -0
  609. package/python/opentrons_shared_data/pipette/dev_types.py +177 -0
  610. package/python/opentrons_shared_data/pipette/file_operation_helpers.py +37 -0
  611. package/python/opentrons_shared_data/pipette/load_data.py +261 -0
  612. package/python/opentrons_shared_data/pipette/model_constants.py +123 -0
  613. package/python/opentrons_shared_data/pipette/mutable_configurations.py +431 -0
  614. package/python/opentrons_shared_data/pipette/pipette_definition.py +503 -0
  615. package/python/opentrons_shared_data/pipette/pipette_load_name_conversions.py +236 -0
  616. package/python/opentrons_shared_data/pipette/scripts/__init__.py +0 -0
  617. package/python/opentrons_shared_data/pipette/scripts/build_json_script.py +469 -0
  618. package/python/opentrons_shared_data/pipette/scripts/update_configuration_files.py +450 -0
  619. package/python/opentrons_shared_data/pipette/types.py +193 -0
  620. package/python/opentrons_shared_data/protocol/__init__.py +13 -0
  621. package/python/opentrons_shared_data/protocol/constants.py +98 -0
  622. package/python/opentrons_shared_data/protocol/dev_types.py +436 -0
  623. package/python/opentrons_shared_data/protocol/models/__init__.py +48 -0
  624. package/python/opentrons_shared_data/protocol/models/protocol_schema_v6.py +145 -0
  625. package/python/opentrons_shared_data/protocol/models/protocol_schema_v7.py +95 -0
  626. package/python/opentrons_shared_data/protocol/models/protocol_schema_v8.py +108 -0
  627. package/python/opentrons_shared_data/protocol/models/shared_models.py +105 -0
  628. package/python/opentrons_shared_data/py.typed +0 -0
  629. package/python/opentrons_shared_data/robot/__init__.py +25 -0
  630. package/python/opentrons_shared_data/robot/dev_types.py +37 -0
  631. package/python/pytest.ini +2 -0
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  634. package/python/tests/__init__.py +1 -0
  635. package/python/tests/conftest.py +0 -0
  636. package/python/tests/deck/__init__.py +0 -0
  637. package/python/tests/deck/test_list_names.py +12 -0
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  639. package/python/tests/deck/test_typechecks.py +28 -0
  640. package/python/tests/errors/__init__.py +1 -0
  641. package/python/tests/errors/test_error_completeness.py +19 -0
  642. package/python/tests/errors/test_exceptions.py +74 -0
  643. package/python/tests/gripper/__init__.py +0 -0
  644. package/python/tests/gripper/test_definition.py +30 -0
  645. package/python/tests/gripper/test_load.py +16 -0
  646. package/python/tests/labware/__init__.py +13 -0
  647. package/python/tests/labware/test_typechecks.py +21 -0
  648. package/python/tests/module/__init__.py +20 -0
  649. package/python/tests/module/test_load.py +49 -0
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  651. package/python/tests/pipette/__init__.py +0 -0
  652. package/python/tests/pipette/test_load_data.py +103 -0
  653. package/python/tests/pipette/test_mutable_configurations.py +266 -0
  654. package/python/tests/pipette/test_pipette_definition.py +183 -0
  655. package/python/tests/pipette/test_pipette_load_name_conversions.py +222 -0
  656. package/python/tests/pipette/test_typechecks.py +50 -0
  657. package/python/tests/pipette/test_validate_schema.py +37 -0
  658. package/python/tests/protocol/__init__.py +15 -0
  659. package/python/tests/protocol/test_protocol_schema_v6.py +107 -0
  660. package/python/tests/protocol/test_protocol_schema_v7.py +34 -0
  661. package/python/tests/protocol/test_protocol_schema_v8.py +20 -0
  662. package/python/tests/protocol/test_typechecks.py +36 -0
  663. package/python/tests/robot/__init__.py +0 -0
  664. package/python/tests/robot/test_typechecks.py +20 -0
  665. package/robot/definitions/1/ot2.json +5 -0
  666. package/robot/definitions/1/ot3.json +5 -0
  667. package/robot/schemas/1.json +30 -0
  668. package/tsconfig-data.json +24 -0
  669. package/tsconfig.json +17 -0
@@ -0,0 +1,146 @@
1
+ import type { DeckSlotId, ModuleModel } from '../../js/types'
2
+ import type {
3
+ ProtocolFile as V3ProtocolFile,
4
+ AspDispAirgapParams,
5
+ BlowoutParams,
6
+ TouchTipParams,
7
+ PipetteAccessParams,
8
+ MoveToSlotParams,
9
+ DelayParams,
10
+ } from './schemaV3'
11
+
12
+ export type { BlowoutParams, FilePipette, FileLabware } from './schemaV3'
13
+
14
+ export interface FileModule {
15
+ slot: DeckSlotId
16
+ model: ModuleModel
17
+ }
18
+
19
+ export interface EngageMagnetParams {
20
+ module: string
21
+ engageHeight: number
22
+ }
23
+
24
+ export interface TemperatureParams {
25
+ module: string
26
+ temperature: number
27
+ }
28
+
29
+ export interface AtomicProfileStep {
30
+ holdTime: number
31
+ temperature: number
32
+ }
33
+
34
+ export interface TCProfileParams {
35
+ module: string
36
+ profile: AtomicProfileStep[]
37
+ volume: number
38
+ }
39
+
40
+ export interface ModuleOnlyParams {
41
+ module: string
42
+ }
43
+
44
+ export interface ThermocyclerSetBlockTemperatureArgs {
45
+ module: string
46
+ temperature: number
47
+ volume?: number
48
+ }
49
+
50
+ export type Command =
51
+ | {
52
+ command: 'aspirate' | 'dispense' | 'airGap'
53
+ params: AspDispAirgapParams
54
+ }
55
+ | {
56
+ command: 'blowout'
57
+ params: BlowoutParams
58
+ }
59
+ | {
60
+ command: 'touchTip'
61
+ params: TouchTipParams
62
+ }
63
+ | {
64
+ command: 'pickUpTip' | 'dropTip'
65
+ params: PipetteAccessParams
66
+ }
67
+ | {
68
+ command: 'moveToSlot'
69
+ params: MoveToSlotParams
70
+ }
71
+ | {
72
+ command: 'delay'
73
+ params: DelayParams
74
+ }
75
+ | {
76
+ command: 'magneticModule/engageMagnet'
77
+ params: EngageMagnetParams
78
+ }
79
+ | {
80
+ command: 'magneticModule/disengageMagnet'
81
+ params: ModuleOnlyParams
82
+ }
83
+ | {
84
+ command: 'temperatureModule/setTargetTemperature'
85
+ params: TemperatureParams
86
+ }
87
+ | {
88
+ command: 'temperatureModule/deactivate'
89
+ params: ModuleOnlyParams
90
+ }
91
+ | {
92
+ command: 'temperatureModule/awaitTemperature'
93
+ params: TemperatureParams
94
+ }
95
+ | {
96
+ command: 'thermocycler/setTargetBlockTemperature'
97
+ params: ThermocyclerSetBlockTemperatureArgs
98
+ }
99
+ | {
100
+ command: 'thermocycler/setTargetLidTemperature'
101
+ params: TemperatureParams
102
+ }
103
+ | {
104
+ command: 'thermocycler/awaitBlockTemperature'
105
+ params: TemperatureParams
106
+ }
107
+ | {
108
+ command: 'thermocycler/awaitLidTemperature'
109
+ params: TemperatureParams
110
+ }
111
+ | {
112
+ command: 'thermocycler/openLid'
113
+ params: ModuleOnlyParams
114
+ }
115
+ | {
116
+ command: 'thermocycler/closeLid'
117
+ params: ModuleOnlyParams
118
+ }
119
+ | {
120
+ command: 'thermocycler/deactivateBlock'
121
+ params: ModuleOnlyParams
122
+ }
123
+ | {
124
+ command: 'thermocycler/deactivateLid'
125
+ params: ModuleOnlyParams
126
+ }
127
+ | {
128
+ command: 'thermocycler/runProfile'
129
+ params: TCProfileParams
130
+ }
131
+ | {
132
+ command: 'thermocycler/awaitProfileComplete'
133
+ params: ModuleOnlyParams
134
+ }
135
+
136
+ // NOTE: must be kept in sync with '../schemas/4.json'
137
+ export interface ProtocolFile<DesignerApplicationData>
138
+ extends Omit<
139
+ V3ProtocolFile<DesignerApplicationData>,
140
+ 'schemaVersion' | 'commands'
141
+ > {
142
+ $otSharedSchema: '#/protocol/schemas/4'
143
+ schemaVersion: 4
144
+ modules: Record<string, FileModule>
145
+ commands: Command[]
146
+ }
@@ -0,0 +1,34 @@
1
+ import type { ProtocolFile as V3ProtocolFile } from './schemaV3'
2
+ import type { Command as V4Command, FileModule } from './schemaV4'
3
+
4
+ export interface MoveToWellParams {
5
+ pipette: string
6
+ labware: string
7
+ well: string
8
+ offset?: {
9
+ x: number
10
+ y: number
11
+ z: number
12
+ }
13
+ minimumZHeight?: number
14
+ forceDirect?: boolean
15
+ }
16
+
17
+ export type Command =
18
+ | V4Command
19
+ | {
20
+ command: 'moveToWell'
21
+ params: MoveToWellParams
22
+ }
23
+
24
+ // NOTE: must be kept in sync with '../schemas/5.json'
25
+ export interface ProtocolFile<DesignerApplicationData>
26
+ extends Omit<
27
+ V3ProtocolFile<DesignerApplicationData>,
28
+ 'schemaVersion' | 'commands'
29
+ > {
30
+ $otSharedSchema: '#/protocol/schemas/5'
31
+ schemaVersion: 5
32
+ modules: Record<string, FileModule>
33
+ commands: Command[]
34
+ }
@@ -0,0 +1,27 @@
1
+ /* NOTE: this file is only necessary until step-generation and protocol-designer
2
+ * implement protocol schema V6. This file was orginally created when it was decided
3
+ * that certain features of V6 schema were needed, but the actual making of said schema
4
+ * was punted. Now that schema V6 does exist, this intermediate type that SG and PD support
5
+ * can be phased out as the two are updated to the V6 schema support.
6
+ */
7
+
8
+ import type { ProtocolFile as V3ProtocolFile, AirGapParams } from './schemaV3'
9
+ import type { FileModule } from './schemaV4'
10
+ import type { Command as V5Command } from './schemaV5'
11
+
12
+ export type Command =
13
+ | V5Command
14
+ | {
15
+ command: 'dispenseAirGap'
16
+ params: AirGapParams
17
+ }
18
+
19
+ // NOTE: must be kept in sync with '../schemas/5.json'
20
+ export type ProtocolFile<
21
+ DesignerApplicationData
22
+ > = V3ProtocolFile<DesignerApplicationData> & {
23
+ $otSharedSchema: '#/protocol/schemas/5'
24
+ schemaVersion: 5
25
+ modules: Record<string, FileModule>
26
+ commands: Command[]
27
+ }
@@ -0,0 +1,146 @@
1
+ import type { CommonCommandRunTimeInfo, CommonCommandCreateInfo } from '.'
2
+ import type { MotorAxis, Coordinates, MotorAxes } from '../../../../js/types'
3
+
4
+ export interface MoveToSlotCreateCommand extends CommonCommandCreateInfo {
5
+ commandType: 'moveToSlot'
6
+ params: MoveToSlotParams
7
+ }
8
+ export interface MoveToSlotRunTimeCommand
9
+ extends CommonCommandRunTimeInfo,
10
+ MoveToSlotCreateCommand {
11
+ result?: {}
12
+ }
13
+ export interface MoveToWellCreateCommand extends CommonCommandCreateInfo {
14
+ commandType: 'moveToWell'
15
+ params: MoveToWellParams
16
+ }
17
+ export interface MoveToWellRunTimeCommand
18
+ extends CommonCommandRunTimeInfo,
19
+ MoveToWellCreateCommand {
20
+ result?: {}
21
+ }
22
+ export interface MoveToCoordinatesCreateCommand
23
+ extends CommonCommandCreateInfo {
24
+ commandType: 'moveToCoordinates'
25
+ params: MoveToCoordinatesParams
26
+ }
27
+ export interface MoveToCoordinatesRunTimeCommand
28
+ extends CommonCommandRunTimeInfo,
29
+ MoveToCoordinatesCreateCommand {
30
+ result?: {}
31
+ }
32
+ export interface MoveRelativeCreateCommand extends CommonCommandCreateInfo {
33
+ commandType: 'moveRelative'
34
+ params: MoveRelativeParams
35
+ }
36
+ export interface MoveRelativeRunTimeCommand
37
+ extends CommonCommandRunTimeInfo,
38
+ MoveRelativeCreateCommand {
39
+ result?: {
40
+ position: Coordinates
41
+ }
42
+ }
43
+ export interface SavePositionCreateCommand extends CommonCommandCreateInfo {
44
+ commandType: 'savePosition'
45
+ params: SavePositionParams
46
+ }
47
+ export interface SavePositionRunTimeCommand
48
+ extends CommonCommandRunTimeInfo,
49
+ SavePositionCreateCommand {
50
+ result?: {
51
+ positionId: string
52
+ position: Coordinates
53
+ }
54
+ }
55
+ export interface HomeCreateCommand extends CommonCommandCreateInfo {
56
+ commandType: 'home'
57
+ params: HomeParams
58
+ }
59
+ export interface HomeRunTimeCommand
60
+ extends CommonCommandRunTimeInfo,
61
+ HomeCreateCommand {
62
+ result?: {}
63
+ }
64
+ export interface RetractAxisCreateCommand extends CommonCommandCreateInfo {
65
+ commandType: 'retractAxis'
66
+ params: RetractAxisParams
67
+ }
68
+ export interface RetractAxisRunTimeCommand
69
+ extends CommonCommandRunTimeInfo,
70
+ RetractAxisCreateCommand {
71
+ result?: {}
72
+ }
73
+ export type GantryRunTimeCommand =
74
+ | MoveToSlotRunTimeCommand
75
+ | MoveToWellRunTimeCommand
76
+ | MoveToCoordinatesRunTimeCommand
77
+ | MoveRelativeRunTimeCommand
78
+ | SavePositionRunTimeCommand
79
+ | HomeRunTimeCommand
80
+ | RetractAxisRunTimeCommand
81
+ export type GantryCreateCommand =
82
+ | MoveToSlotCreateCommand
83
+ | MoveToWellCreateCommand
84
+ | MoveToCoordinatesCreateCommand
85
+ | MoveRelativeCreateCommand
86
+ | SavePositionCreateCommand
87
+ | HomeCreateCommand
88
+ | RetractAxisCreateCommand
89
+
90
+ interface MoveToSlotParams {
91
+ pipetteId: string
92
+ slotName: string
93
+ offset?: {
94
+ x: number
95
+ y: number
96
+ z: number
97
+ }
98
+ minimumZHeight?: number
99
+ forceDirect?: boolean
100
+ }
101
+
102
+ export interface MoveToWellParams {
103
+ pipetteId: string
104
+ labwareId: string
105
+ wellName: string
106
+ wellLocation?: {
107
+ origin?: 'top' | 'bottom'
108
+ offset?: {
109
+ x?: number
110
+ y?: number
111
+ z?: number
112
+ }
113
+ }
114
+ minimumZHeight?: number
115
+ forceDirect?: boolean
116
+ }
117
+
118
+ interface MoveToCoordinatesParams {
119
+ pipetteId: string
120
+ coordinates: {
121
+ x: number
122
+ y: number
123
+ z: number
124
+ }
125
+ minimumZHeight?: number
126
+ forceDirect?: boolean
127
+ }
128
+
129
+ interface MoveRelativeParams {
130
+ pipetteId: string
131
+ axis: 'x' | 'y' | 'z'
132
+ distance: number
133
+ }
134
+
135
+ interface SavePositionParams {
136
+ pipetteId: string // pipette to use in measurement
137
+ positionId?: string // position ID, auto-assigned if left blank
138
+ }
139
+
140
+ interface HomeParams {
141
+ axes?: MotorAxes
142
+ }
143
+
144
+ interface RetractAxisParams {
145
+ axis: MotorAxis
146
+ }
@@ -0,0 +1,65 @@
1
+ import type {
2
+ PipettingRunTimeCommand,
3
+ PipettingCreateCommand,
4
+ } from './pipetting'
5
+ import type { GantryRunTimeCommand, GantryCreateCommand } from './gantry'
6
+ import type { ModuleRunTimeCommand, ModuleCreateCommand } from './module'
7
+ import type { SetupRunTimeCommand, SetupCreateCommand } from './setup'
8
+ import type { TimingRunTimeCommand, TimingCreateCommand } from './timing'
9
+
10
+ export * from './pipetting'
11
+ export * from './gantry'
12
+ export * from './module'
13
+ export * from './setup'
14
+ export * from './timing'
15
+
16
+ // NOTE: these key/value pairs will only be present on commands at analysis/run time
17
+ // they pertain only to the actual execution status of a command on hardware, as opposed to
18
+ // the command's identity and parameters which can be known prior to runtime
19
+
20
+ export type CommandStatus = 'queued' | 'running' | 'succeeded' | 'failed'
21
+ export interface CommonCommandRunTimeInfo {
22
+ key?: string
23
+ id: string
24
+ status: CommandStatus
25
+ error?: RunCommandError | null
26
+ createdAt: string
27
+ startedAt: string | null
28
+ completedAt: string | null
29
+ intent?: 'protocol' | 'setup'
30
+ }
31
+ export interface CommonCommandCreateInfo {
32
+ key?: string
33
+ meta?: { [key: string]: any }
34
+ }
35
+
36
+ export type CreateCommand =
37
+ | PipettingCreateCommand // involves the pipettes plunger motor
38
+ | GantryCreateCommand // movement that only effects the x,y,z position of the gantry/pipette
39
+ | ModuleCreateCommand // directed at a hardware module
40
+ | SetupCreateCommand // only effecting robot's equipment setup (pipettes, labware, modules, liquid), no hardware side-effects
41
+ | TimingCreateCommand // effecting the timing of command execution
42
+ | ({
43
+ commandType: 'custom'
44
+ params: { [key: string]: any }
45
+ } & CommonCommandCreateInfo) // allows for experimentation between schema versions with no expectation of system support
46
+
47
+ // commands will be required to have a key, but will not be created with one
48
+ export type RunTimeCommand =
49
+ | PipettingRunTimeCommand // involves the pipettes plunger motor
50
+ | GantryRunTimeCommand // movement that only effects the x,y,z position of the gantry/pipette
51
+ | ModuleRunTimeCommand // directed at a hardware module
52
+ | SetupRunTimeCommand // only effecting robot's equipment setup (pipettes, labware, modules, liquid), no hardware side-effects
53
+ | TimingRunTimeCommand // effecting the timing of command execution
54
+ | ({
55
+ commandType: 'custom'
56
+ params: { [key: string]: any }
57
+ result?: any
58
+ } & CommonCommandRunTimeInfo) // allows for experimentation between schema versions with no expectation of system support
59
+
60
+ interface RunCommandError {
61
+ id: string
62
+ errorType: string
63
+ createdAt: string
64
+ detail: string
65
+ }