@nfdi4plants/arctrl 3.0.0-beta.4 → 3.0.0-beta.6

package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js

@@ -1,20 +1,40 @@
-import { iterate, indexed, choose, tryPick, map, tryItem, isEmpty, maxBy, length, delay, append as append$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { value, map as map$1, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { equals, comparePrimitives } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
-import { Record } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
-import { FsAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js';
-import { exists, find, cons, empty, append, singleton, map as map$2, initialize } from '../../../node_modules/@fable-org/fable-library-js/List.js';
-import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
+import { indexed, map, choose, initialize, maxBy, tryPick, fold, iterate, isEmpty, length, tryItem, delay, append as append$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { map as map$1, value, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ofSeq, tryFind } from '../../../node_modules/@fable-org/fable-library-js/Map.js';
+import { comparePrimitives, equals } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
+import { DataType_String } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js';
+import { RowBuilder_$ctor, RowBuilder__Combine_19F30600, RowBuilder_get_Empty } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/RowBuilder.fs.js';
+import { SheetEntity$1_some_2B595, Messages_format, RowElement_UnindexedCell, RowElement_IndexedCell, ColumnIndex } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Types.fs.js';
+import { singleton, empty, append, exists, find, cons, initialize as initialize$1, map as map$2 } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { CellBuilder__AsCellElement_6F87C2ED, CellBuilder_$ctor } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/CellBuilder.fs.js';
 import { FsRangeAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js';
-import { Seq_trySkip, Dictionary_tryGetValue } from '../CollectionAux.js';
+import { FsAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js';
+import { Record } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { record_type, class_type, list_type, int32_type, tuple_type, string_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { Dictionary_tryGetValue, Seq_trySkip } from '../CollectionAux.js';
 import { getItemFromDict, addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { Dictionary_init } from '../../Core/Helper/Collections.js';
+import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
 import { Remark, Comment$ } from '../../Core/Comment.js';
 import { Comment_$007CComment$007C_$007C, Remark_$007CRemark$007C_$007C, Comment_wrapCommentKey } from './Comment.js';
 
 function SparseRowModule_fromValues(v) {
   return indexed(v);
 }
+function SparseRowModule_getValues(i) {
+  return map((tuple) => tuple[1], i);
+}
+function SparseRowModule_fromAllValues(v) {
+  return choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), indexed(v));
+}
+function SparseRowModule_getAllValues(i) {
+  const m = ofSeq(i, {
+    Compare: comparePrimitives
+  });
+  return initialize(maxBy((tuple) => tuple[0], i, {
+    Compare: comparePrimitives
+  })[0] + 1, (i_1) => tryFind(i_1, m));
+}
 function SparseRowModule_fromFsRow(r) {
   return choose((c) => {
     if (equals(c.Value, "")) {
@@ -33,6 +53,219 @@ function SparseRowModule_tryGetValueAt(i, vs) {
     }
   }, vs);
 }
+function SparseRowModule_toDSLRow(vs) {
+  const builder$0040 = RowBuilder_$ctor();
+  let this$_9;
+  const ns = map((_arg) => {
+    const v = _arg;
+    if (v == null) {
+      let c_1;
+      const this$_5 = CellBuilder__AsCellElement_6F87C2ED(CellBuilder_$ctor(), SheetEntity$1_some_2B595(singleton([DataType_String(), ""])));
+      let matchResult, errs_1, f_1, ms_2_1;
+      switch (this$_5.tag) {
+        case /* NoneOptional */
+        1: {
+          if (equals(this$_5.fields[0], empty())) {
+            matchResult = 1;
+            ms_2_1 = this$_5.fields[0];
+          } else {
+            matchResult = 2;
+          }
+          break;
+        }
+        case /* NoneRequired */
+        2: {
+          if (equals(this$_5.fields[0], empty())) {
+            matchResult = 1;
+            ms_2_1 = this$_5.fields[0];
+          } else {
+            matchResult = 2;
+          }
+          break;
+        }
+        default: {
+          matchResult = 0;
+          errs_1 = this$_5.fields[1];
+          f_1 = this$_5.fields[0];
+        }
+      }
+      switch (matchResult) {
+        case 0: {
+          c_1 = f_1;
+          break;
+        }
+        case 1: {
+          throw new Error("SheetEntity does not contain Value.");
+          break;
+        }
+        default: {
+          let matchResult_1, ms_3_1;
+          switch (this$_5.tag) {
+            case /* NoneOptional */
+            1: {
+              matchResult_1 = 0;
+              ms_3_1 = this$_5.fields[0];
+              break;
+            }
+            case /* NoneRequired */
+            2: {
+              matchResult_1 = 0;
+              ms_3_1 = this$_5.fields[0];
+              break;
+            }
+            default:
+              matchResult_1 = 1;
+          }
+          switch (matchResult_1) {
+            case 0: {
+              throw new Error(`SheetEntity does not contain Value: 
+	${Messages_format(ms_3_1)}`);
+              break;
+            }
+            default:
+              throw new Error("Match failure: FsSpreadsheet.DSL.SheetEntity`1");
+          }
+        }
+      }
+      return SheetEntity$1_some_2B595(singleton(c_1[1] == null ? RowElement_UnindexedCell(c_1[0]) : RowElement_IndexedCell(new ColumnIndex(value(c_1[1])), c_1[0])));
+    } else {
+      const v_1 = value(v);
+      let c;
+      const this$_2 = CellBuilder__AsCellElement_6F87C2ED(CellBuilder_$ctor(), SheetEntity$1_some_2B595(singleton([DataType_String(), v_1])));
+      let matchResult_2, errs, f, ms_2;
+      switch (this$_2.tag) {
+        case /* NoneOptional */
+        1: {
+          if (equals(this$_2.fields[0], empty())) {
+            matchResult_2 = 1;
+            ms_2 = this$_2.fields[0];
+          } else {
+            matchResult_2 = 2;
+          }
+          break;
+        }
+        case /* NoneRequired */
+        2: {
+          if (equals(this$_2.fields[0], empty())) {
+            matchResult_2 = 1;
+            ms_2 = this$_2.fields[0];
+          } else {
+            matchResult_2 = 2;
+          }
+          break;
+        }
+        default: {
+          matchResult_2 = 0;
+          errs = this$_2.fields[1];
+          f = this$_2.fields[0];
+        }
+      }
+      switch (matchResult_2) {
+        case 0: {
+          c = f;
+          break;
+        }
+        case 1: {
+          throw new Error("SheetEntity does not contain Value.");
+          break;
+        }
+        default: {
+          let matchResult_3, ms_3;
+          switch (this$_2.tag) {
+            case /* NoneOptional */
+            1: {
+              matchResult_3 = 0;
+              ms_3 = this$_2.fields[0];
+              break;
+            }
+            case /* NoneRequired */
+            2: {
+              matchResult_3 = 0;
+              ms_3 = this$_2.fields[0];
+              break;
+            }
+            default:
+              matchResult_3 = 1;
+          }
+          switch (matchResult_3) {
+            case 0: {
+              throw new Error(`SheetEntity does not contain Value: 
+	${Messages_format(ms_3)}`);
+              break;
+            }
+            default:
+              throw new Error("Match failure: FsSpreadsheet.DSL.SheetEntity`1");
+          }
+        }
+      }
+      return SheetEntity$1_some_2B595(singleton(c[1] == null ? RowElement_UnindexedCell(c[0]) : RowElement_IndexedCell(new ColumnIndex(value(c[1])), c[0])));
+    }
+  }, SparseRowModule_getAllValues(vs));
+  this$_9 = fold((state, we) => RowBuilder__Combine_19F30600(builder$0040, state, we), RowBuilder_get_Empty(), ns);
+  let matchResult_4, errs_2, f_3, ms_2_2;
+  switch (this$_9.tag) {
+    case /* NoneOptional */
+    1: {
+      if (equals(this$_9.fields[0], empty())) {
+        matchResult_4 = 1;
+        ms_2_2 = this$_9.fields[0];
+      } else {
+        matchResult_4 = 2;
+      }
+      break;
+    }
+    case /* NoneRequired */
+    2: {
+      if (equals(this$_9.fields[0], empty())) {
+        matchResult_4 = 1;
+        ms_2_2 = this$_9.fields[0];
+      } else {
+        matchResult_4 = 2;
+      }
+      break;
+    }
+    default: {
+      matchResult_4 = 0;
+      errs_2 = this$_9.fields[1];
+      f_3 = this$_9.fields[0];
+    }
+  }
+  switch (matchResult_4) {
+    case 0:
+      return f_3;
+    case 1:
+      throw new Error("SheetEntity does not contain Value.");
+    default: {
+      let matchResult_5, ms_3_2;
+      switch (this$_9.tag) {
+        case /* NoneOptional */
+        1: {
+          matchResult_5 = 0;
+          ms_3_2 = this$_9.fields[0];
+          break;
+        }
+        case /* NoneRequired */
+        2: {
+          matchResult_5 = 0;
+          ms_3_2 = this$_9.fields[0];
+          break;
+        }
+        default:
+          matchResult_5 = 1;
+      }
+      switch (matchResult_5) {
+        case 0:
+          throw new Error(`SheetEntity does not contain Value: 
+	${Messages_format(ms_3_2)}`);
+        default:
+          throw new Error("Match failure: FsSpreadsheet.DSL.SheetEntity`1");
+      }
+    }
+  }
+}
+function SparseRowModule_readFromSheet(sheet) {
+  return map(SparseRowModule_fromFsRow, sheet.Rows);
+}
 function SparseRowModule_writeToSheet(rowI, row, sheet) {
   const fsRow = sheet.RowWithRange(new FsRangeAddress(new FsAddress(rowI, 1), new FsAddress(rowI, 1)), true);
   iterate((tupledArg) => {
@@ -51,6 +284,9 @@ class SparseTable extends Record {
     this.ColumnCount = ColumnCount | 0;
   }
 }
+function SparseTable_$reflection() {
+  return record_type("ARCtrl.Spreadsheet.SparseTable", [], SparseTable, () => [["Matrix", class_type("System.Collections.Generic.Dictionary`2", [tuple_type(string_type, int32_type), string_type])], ["Keys", list_type(string_type)], ["CommentKeys", list_type(string_type)], ["ColumnCount", int32_type]]);
+}
 function SparseTable__TryGetValue_11FD62A8(this$, key) {
   return Dictionary_tryGetValue(key, this$.Matrix);
 }
@@ -183,11 +419,11 @@ function SparseTable_FromRows_Z5579EC29(en, labels, lineNumber, prefix) {
 }
 function SparseTable_ToRows_759CAFC1(matrix, prefix) {
   const prefix_1 = prefix == null ? "" : value(prefix) + " ";
-  return delay(() => append$1(map((key) => SparseRowModule_fromValues(cons(prefix_1 + key, initialize(matrix.ColumnCount - 1, (i) => SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [key, i + 1])))), matrix.Keys), delay(() => map((key_1) => SparseRowModule_fromValues(cons(Comment_wrapCommentKey(key_1), initialize(matrix.ColumnCount - 1, (i_1) => SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [key_1, i_1 + 1])))), matrix.CommentKeys))));
+  return delay(() => append$1(map((key) => SparseRowModule_fromValues(cons(prefix_1 + key, initialize$1(matrix.ColumnCount - 1, (i) => SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [key, i + 1])))), matrix.Keys), delay(() => map((key_1) => SparseRowModule_fromValues(cons(Comment_wrapCommentKey(key_1), initialize$1(matrix.ColumnCount - 1, (i_1) => SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [key_1, i_1 + 1])))), matrix.CommentKeys))));
 }
 function SparseTable_GetEmptyComments_3ECCA699(matrix) {
   const collection = map$2((key) => Comment$.create(key), matrix.CommentKeys);
   return Array.from(collection);
 }
 
-export { SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_tryGetValueAt, SparseRowModule_writeToSheet, SparseTable, SparseTable_AddComment, SparseTable_AddEmptyComment, SparseTable_AddRow, SparseTable_Create_Z2192E64B, SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable_ToRows_759CAFC1, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8 };
+export { SparseRowModule_fromAllValues, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_getAllValues, SparseRowModule_getValues, SparseRowModule_readFromSheet, SparseRowModule_toDSLRow, SparseRowModule_tryGetValueAt, SparseRowModule_writeToSheet, SparseTable, SparseTable_$reflection, SparseTable_AddComment, SparseTable_AddEmptyComment, SparseTable_AddRow, SparseTable_Create_Z2192E64B, SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable_ToRows_759CAFC1, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8 };

package/dist/ts/ts/Spreadsheet/Metadata/Study.js

@@ -1,13 +1,14 @@
 import { Record } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
-import { ofSeq, empty, append, ofArray, map, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
-import { defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ofArray, map, empty, cons, reverse, append, ofSeq } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { Comment$_$reflection } from '../../Core/Comment.js';
 import { stringHash } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
-import { collect, delay, append as append$1, singleton } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { record_type, string_type, list_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable__TryGetValueDefault_5BAE6133, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable, SparseRowModule_fromValues } from './SparseTable.js';
+import { SparseTable__TryGetValueDefault_5BAE6133, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1, SparseRowModule_fromValues } from './SparseTable.js';
 import { createMissingIdentifier, Study_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
-import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
+import { defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ResizeArray_iter, Option_fromValueWithDefault } from '../../Core/Helper/Collections.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
 import { ArcStudy } from '../../Core/ArcTypes.js';
 import { fromRows as fromRows$6, toRows as toRows$1 } from './DesignDescriptors.js';
@@ -16,6 +17,7 @@ import { fromRows as fromRows$4, toRows as toRows$3 } from './Factors.js';
 import { fromRows as fromRows$3, toRows as toRows$4 } from './Assays.js';
 import { fromRows as fromRows$2, toRows as toRows$5 } from './Protocols.js';
 import { fromRows as fromRows$1, toRows as toRows$6 } from './Contacts.js';
+import { collect, delay, append as append$1, singleton } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { ARCtrl_ArcTable__ArcTable_GetProtocols, ARCtrl_ArcTable__ArcTable_GetProcesses } from '../../Core/Conversion.js';
 import { getFactors } from '../../Core/Process/ProcessSequence.js';
 
@@ -31,6 +33,9 @@ class StudyInfo extends Record {
     this.Comments = Comments;
   }
 }
+function StudyInfo_$reflection() {
+  return record_type("ARCtrl.Spreadsheet.Studies.StudyInfo", [], StudyInfo, () => [["Identifier", string_type], ["Title", string_type], ["Description", string_type], ["SubmissionDate", string_type], ["PublicReleaseDate", string_type], ["FileName", string_type], ["Comments", list_type(Comment$_$reflection())]]);
+}
 function StudyInfo_create(identifier, title, description, submissionDate, publicReleaseDate, fileName, comments) {
   return new StudyInfo(identifier, title, description, submissionDate, publicReleaseDate, fileName, comments);
 }
@@ -93,37 +98,37 @@ function fromRows(lineNumber, en) {
     loop:
       while (true) {
         const lastLine = lastLine_mut, studyInfo = studyInfo_mut, designDescriptors = designDescriptors_mut, publications = publications_mut, factors = factors_mut, assays = assays_mut, protocols = protocols_mut, contacts = contacts_mut, remarks = remarks_mut, lineNumber_1 = lineNumber_1_mut;
-        let matchResult, k_12;
+        let matchResult, k_6, k_7, k_8, k_9, k_10, k_11, k_12;
         if (lastLine != null) {
           switch (value(lastLine)) {
             case "STUDY DESIGN DESCRIPTORS": {
               matchResult = 0;
-              value(lastLine);
+              k_6 = value(lastLine);
               break;
             }
             case "STUDY PUBLICATIONS": {
               matchResult = 1;
-              value(lastLine);
+              k_7 = value(lastLine);
               break;
             }
             case "STUDY FACTORS": {
               matchResult = 2;
-              value(lastLine);
+              k_8 = value(lastLine);
               break;
             }
             case "STUDY ASSAYS": {
               matchResult = 3;
-              value(lastLine);
+              k_9 = value(lastLine);
               break;
             }
             case "STUDY PROTOCOLS": {
               matchResult = 4;
-              value(lastLine);
+              k_10 = value(lastLine);
               break;
             }
             case "STUDY CONTACTS": {
               matchResult = 5;
-              value(lastLine);
+              k_11 = value(lastLine);
               break;
             }
             default: {
@@ -223,6 +228,7 @@ function fromRows(lineNumber, en) {
           default:
             return [k_12, lineNumber_1, remarks, fromParts(studyInfo, designDescriptors, publications, factors, assays, protocols, contacts)];
         }
+        break;
       }
   };
   const patternInput_6 = StudyInfo_fromRows(lineNumber, en);
@@ -235,4 +241,4 @@ function toRows(study, assays) {
   return delay(() => append$1(StudyInfo_toRows_1680536E(study), delay(() => append$1(singleton(SparseRowModule_fromValues(["STUDY DESIGN DESCRIPTORS"])), delay(() => append$1(toRows$1("Study Design", ofSeq(study.StudyDesignDescriptors)), delay(() => append$1(singleton(SparseRowModule_fromValues(["STUDY PUBLICATIONS"])), delay(() => append$1(toRows$2("Study Publication", ofSeq(study.Publications)), delay(() => append$1(singleton(SparseRowModule_fromValues(["STUDY FACTORS"])), delay(() => append$1(toRows$3("Study Factor", factors), delay(() => append$1(singleton(SparseRowModule_fromValues(["STUDY ASSAYS"])), delay(() => append$1(toRows$4("Study Assay", assays_1), delay(() => append$1(singleton(SparseRowModule_fromValues(["STUDY PROTOCOLS"])), delay(() => append$1(toRows$5("Study Protocol", protocols), delay(() => append$1(singleton(SparseRowModule_fromValues(["STUDY CONTACTS"])), delay(() => toRows$6("Study Person", ofSeq(study.Contacts)))))))))))))))))))))))))));
 }
 
-export { StudyInfo, StudyInfo_FromSparseTable_3ECCA699, StudyInfo_ToSparseTable_1680536E, StudyInfo_create, StudyInfo_fromRows, StudyInfo_get_Labels, StudyInfo_toRows_1680536E, fromParts, fromRows, toRows };
+export { StudyInfo, StudyInfo_$reflection, StudyInfo_FromSparseTable_3ECCA699, StudyInfo_ToSparseTable_1680536E, StudyInfo_create, StudyInfo_fromRows, StudyInfo_get_Labels, StudyInfo_toRows_1680536E, fromParts, fromRows, toRows };

package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js

@@ -1,13 +1,13 @@
-import { ofArray, map, empty, ofSeq, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { ofArray, map as map$1, empty, ofSeq, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { value, unwrap, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { ProtocolParameter_fromAggregatedStrings, Component_fromAggregatedStrings, ProtocolParameter_toAggregatedStrings, Component_toAggregatedStrings } from './Conversions.js';
 import { ArcWorkflow_make, ArcWorkflow__get_Identifier, ArcWorkflow__get_WorkflowType, ArcWorkflow__get_Parameters, ArcWorkflow__get_Components, ArcWorkflow__get_SubWorkflowIdentifiers, ArcWorkflow__get_Title, ArcWorkflow__get_Description, ArcWorkflow__get_URI, ArcWorkflow__get_Version, ArcWorkflow__get_Comments } from '../../Core/ArcTypes.js';
 import { createMissingIdentifier, Workflow_tryIdentifierFromFileName, Workflow_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { join } from '../../../node_modules/@fable-org/fable-library-js/String.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -38,7 +38,7 @@ function fromString(identifier, title, description, workflowType, workflowTypeTe
     subworkflowIdentifiers_2 = [];
   } else {
     const subworkflowIdentifiers_1 = value(subworkflowIdentifiers);
-    const collection = map$1((s) => s.trim(), subworkflowIdentifiers_1.split(";"));
+    const collection = map((s) => s.trim(), subworkflowIdentifiers_1.split(";"));
     subworkflowIdentifiers_2 = Array.from(collection);
   }
   let workflowType_1;
@@ -53,7 +53,7 @@ function fromString(identifier, title, description, workflowType, workflowTypeTe
   return ArcWorkflow_make(identifier == null ? fileName == null ? createMissingIdentifier() : (matchValue = Workflow_tryIdentifierFromFileName(value(fileName)), matchValue != null ? value(matchValue) : createMissingIdentifier()) : value(identifier), title, description, workflowType_1, uri, version, subworkflowIdentifiers_2, parameters, components, void 0, [], comments);
 }
 function fromSparseTable(matrix) {
-  const comments = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
+  const comments = map$1((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
   return fromString(SparseTable__TryGetValue_11FD62A8(matrix, [identifierLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [titleLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [descriptionLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [workflowTypeLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [typeTermAccessionNumberLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [typeTermSourceREFLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [subWorkflowIdentifiersLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [uriLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [versionLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersNameLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersTermAccessionNumberLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersTermSourceREFLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsNameLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeTermAccessionNumberLabel, 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeTermSourceREFLabel, 0]), SparseTable__TryGetValue_11FD62A8(matrix, [fileNameLabel, 0]), Array.from(comments));
 }
 function toSparseTable(workflow) {

package/dist/ts/ts/Template.Web.js

@@ -3,6 +3,7 @@ import { singleton } from '../node_modules/@fable-org/fable-library-js/AsyncBuil
 import { downloadFile } from './WebRequest/WebRequest.js';
 import { Templates_fromJsonString } from './JsonIO/Table/Templates.js';
 import { startAsPromise } from '../node_modules/@fable-org/fable-library-js/Async.js';
+import { class_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
 
 function getTemplates(url) {
   const url_1 = defaultArg(url, "https://github.com/nfdi4plants/Swate-templates/releases/download/latest/templates_v2.0.0.json");
@@ -18,5 +19,8 @@ class WebController {
     return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(_arg))));
   }
 }
+function WebController_$reflection() {
+  return class_type("ARCtrl.Template.Web.WebController", void 0, WebController);
+}
 
-export { WebController, getTemplates };
+export { WebController, WebController_$reflection, getTemplates };

package/dist/ts/ts/ValidationPackages/ValidationPackage.js

@@ -3,6 +3,7 @@ import { join } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { toList, delay, append, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { equals, stringHash } from '../../node_modules/@fable-org/fable-library-js/Util.js';
 import { boxHashArray, boxHashOption } from '../Core/Helper/HashCodes.js';
+import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
 
 class ValidationPackage {
   constructor(name, version) {
@@ -49,5 +50,11 @@ class ValidationPackage {
     return boxHashArray([stringHash(this$.Name), boxHashOption(this$.Version)]) | 0;
   }
 }
+function ValidationPackage_$reflection() {
+  return class_type("ARCtrl.ValidationPackages.ValidationPackage", void 0, ValidationPackage);
+}
+function ValidationPackage_$ctor_27AED5E3(name, version) {
+  return new ValidationPackage(name, version);
+}
 
-export { ValidationPackage };
+export { ValidationPackage, ValidationPackage_$ctor_27AED5E3, ValidationPackage_$reflection };

package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js

@@ -1,11 +1,12 @@
 import { unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
 import { join } from '../../node_modules/@fable-org/fable-library-js/String.js';
-import { toList, delay, append, fold, length, map, item, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { toList, delay, append, singleton, empty, map, fold, length, item } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
 import { sortBy } from '../../node_modules/@fable-org/fable-library-js/Array.js';
-import { equals, compareArrays } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { compareArrays, equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
 import { rangeDouble } from '../../node_modules/@fable-org/fable-library-js/Range.js';
 import { boxHashArray, boxHashOption, boxHashSeq } from '../Core/Helper/HashCodes.js';
+import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
 
 class ValidationPackagesConfig {
   constructor(validation_packages, arc_specification) {
@@ -74,5 +75,11 @@ class ValidationPackagesConfig {
     return boxHashArray([boxHashOption(this$.ARCSpecification), boxHashSeq(this$.ValidationPackages)]) | 0;
   }
 }
+function ValidationPackagesConfig_$reflection() {
+  return class_type("ARCtrl.ValidationPackages.ValidationPackagesConfig", void 0, ValidationPackagesConfig);
+}
+function ValidationPackagesConfig_$ctor_376974AD(validation_packages, arc_specification) {
+  return new ValidationPackagesConfig(validation_packages, arc_specification);
+}
 
-export { ValidationPackagesConfig };
+export { ValidationPackagesConfig, ValidationPackagesConfig_$ctor_376974AD, ValidationPackagesConfig_$reflection };

package/dist/ts/ts/WebRequest/WebRequest.Node.js

@@ -4,6 +4,7 @@ import { empty } from '../../node_modules/@fable-org/fable-library-js/List.js';
 
 function isNode() {
   return typeof process !== "undefined" && process.versions != null && process.versions.node != null;
+  ;
 }
 function downloadFile(url) {
   let pr_1, pr;

package/dist/ts/ts/Xlsx.d.ts

@@ -1,7 +1,7 @@
 import { FsWorkbook } from './fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 import { DataMap } from './Core/DataMap.js';
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { ArcInvestigation, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
+import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
 import { FSharpList } from '@fable-org/fable-library-js/List.js';
 export declare class XlsxHelper_DatamapXlsx {
     constructor();
@@ -30,6 +30,24 @@ export declare class XlsxHelper_StudyXlsx {
 }
 export declare function XlsxHelper_StudyXlsx_$reflection(): TypeInfo;
 export declare function XlsxHelper_StudyXlsx_$ctor(): XlsxHelper_StudyXlsx;
+export declare class XlsxHelper_WorkflowXlsx {
+    constructor();
+    fromFsWorkbook(fswb: FsWorkbook): ArcWorkflow;
+    toFsWorkbook(workflow: ArcWorkflow): FsWorkbook;
+    fromXlsxFileAsync(path: string): Promise<ArcWorkflow>;
+    toXlsxFileAsync(path: string, workflow: ArcWorkflow): Promise<void>;
+}
+export declare function XlsxHelper_WorkflowXlsx_$reflection(): TypeInfo;
+export declare function XlsxHelper_WorkflowXlsx_$ctor(): XlsxHelper_WorkflowXlsx;
+export declare class XlsxHelper_RunXlsx {
+    constructor();
+    fromFsWorkbook(fswb: FsWorkbook): ArcRun;
+    toFsWorkbook(run: ArcRun): FsWorkbook;
+    fromXlsxFileAsync(path: string): Promise<ArcRun>;
+    toXlsxFileAsync(path: string, run: ArcRun): Promise<void>;
+}
+export declare function XlsxHelper_RunXlsx_$reflection(): TypeInfo;
+export declare function XlsxHelper_RunXlsx_$ctor(): XlsxHelper_RunXlsx;
 export declare class XlsxHelper_InvestigationXlsx {
     constructor();
     fromFsWorkbook(fswb: FsWorkbook): ArcInvestigation;
@@ -44,6 +62,8 @@ export declare class XlsxController {
     static get Datamap(): XlsxHelper_DatamapXlsx;
     static get Assay(): XlsxHelper_AssayXlsx;
     static get Study(): XlsxHelper_StudyXlsx;
+    static get Workflow(): XlsxHelper_WorkflowXlsx;
+    static get Run(): XlsxHelper_RunXlsx;
     static get Investigation(): XlsxHelper_InvestigationXlsx;
 }
 export declare function XlsxController_$reflection(): TypeInfo;

package/dist/ts/ts/Xlsx.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Xlsx.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Xlsx.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,8DAA8D,CAAC;AAC1F,OAAO,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAG5C,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE/F,OAAO,EAAS,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAMxE,qBAAa,sBAAsB;;IAG/B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO;IAGzC,YAAY,CAAC,OAAO,EAAE,OAAO,GAAG,UAAU;IAG1C,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAGjD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;CAGjE;AAED,wBAAgB,kCAAkC,IAAI,QAAQ,CAE7D;AAED,wBAAgB,4BAA4B,IAAI,sBAAsB,CAErE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,QAAQ;IAG1C,YAAY,CAAC,KAAK,EAAE,QAAQ,GAAG,UAAU;IAGzC,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC;IAGlD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhE;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;IAGlE,YAAY,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,UAAU;IAG9D,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC;IAG1E,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;CAGrF;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,uBAAuB;;IAGhC,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,WAAW;IAG7C,YAAY,CAAC,QAAQ,EAAE,WAAW,GAAG,UAAU;IAG/C,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC;IAGrD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC;CAGtE;AAED,wBAAgB,mCAAmC,IAAI,QAAQ,CAE9D;AAED,wBAAgB,6BAA6B,IAAI,uBAAuB,CAEvE;AAED,qBAAa,kBAAkB;;IAG3B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM;IAGxC,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,UAAU;IAGrC,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAGhD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;CAG5D;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED,wBAAgB,wBAAwB,IAAI,kBAAkB,CAE7D;AAED,qBAAa,4BAA4B;;IAGrC,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,gBAAgB;IAGlD,YAAY,CAAC,aAAa,EAAE,gBAAgB,GAAG,UAAU;IAGzD,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAG1D,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhF;AAED,wBAAgB,wCAAwC,IAAI,QAAQ,CAEnE;AAED,wBAAgB,kCAAkC,IAAI,4BAA4B,CAEjF;AAED,qBAAa,cAAc;;IAGvB,MAAM,KAAK,OAAO,IAAI,sBAAsB,CAE3C;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,QAAQ,IAAI,uBAAuB,CAE7C;IACD,MAAM,KAAK,GAAG,IAAI,kBAAkB,CAEnC;IACD,MAAM,KAAK,aAAa,IAAI,4BAA4B,CAEvD;CACJ;AAED,wBAAgB,0BAA0B,IAAI,QAAQ,CAErD"}