@nfdi4plants/arctrl 3.0.0-beta.4 → 3.0.0-beta.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (323) hide show
  1. package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +894 -4
  2. package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +121 -3
  3. package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +279 -1
  4. package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +101 -2
  5. package/dist/ts/node_modules/@fable-org/fable-library-js/Choice.js +187 -0
  6. package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +156 -2
  7. package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +183 -7
  8. package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +217 -5
  9. package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +154 -5
  10. package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +20 -1
  11. package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Collections.js +30 -0
  12. package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +68 -1
  13. package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +6 -1
  14. package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +98 -1
  15. package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +18 -1
  16. package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +601 -5
  17. package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +10 -1
  18. package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +760 -16
  19. package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +26 -1
  20. package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +18 -8
  21. package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +36 -4
  22. package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +35 -1
  23. package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +26 -1
  24. package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +355 -1
  25. package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +21 -2
  26. package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +133 -1
  27. package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +543 -8
  28. package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +53 -4
  29. package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +673 -41
  30. package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +197 -4
  31. package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +128 -3
  32. package/dist/ts/node_modules/@fable-org/fable-library-js/SystemException.js +8 -0
  33. package/dist/ts/node_modules/@fable-org/fable-library-js/TimeSpan.js +180 -0
  34. package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +20 -2
  35. package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +406 -2
  36. package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +2 -2
  37. package/dist/ts/ts/ARC.d.ts +12 -5
  38. package/dist/ts/ts/ARC.d.ts.map +1 -1
  39. package/dist/ts/ts/ARC.js +172 -93
  40. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
  41. package/dist/ts/ts/Contract/ARC.js +8 -1
  42. package/dist/ts/ts/Contract/ArcAssay.js +14 -5
  43. package/dist/ts/ts/Contract/ArcInvestigation.js +10 -1
  44. package/dist/ts/ts/Contract/ArcRun.js +19 -6
  45. package/dist/ts/ts/Contract/ArcStudy.js +19 -6
  46. package/dist/ts/ts/Contract/ArcWorkflow.js +19 -6
  47. package/dist/ts/ts/Contract/Contract.js +42 -1
  48. package/dist/ts/ts/Contract/Datamap.js +61 -17
  49. package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
  50. package/dist/ts/ts/Contract/Git.js +22 -6
  51. package/dist/ts/ts/Contract/License.d.ts +5 -0
  52. package/dist/ts/ts/Contract/License.d.ts.map +1 -0
  53. package/dist/ts/ts/Contract/License.js +34 -0
  54. package/dist/ts/ts/Contract/ValidationPackagesConfig.js +31 -6
  55. package/dist/ts/ts/ContractIO/ContractIO.js +5 -5
  56. package/dist/ts/ts/ContractIO/FileSystemHelper.js +16 -4
  57. package/dist/ts/ts/Conversion.js +321 -48
  58. package/dist/ts/ts/Core/ArcTypes.js +216 -15
  59. package/dist/ts/ts/Core/Comment.js +11 -1
  60. package/dist/ts/ts/Core/CommentList.js +77 -2
  61. package/dist/ts/ts/Core/Conversion.js +123 -43
  62. package/dist/ts/ts/Core/Data.js +9 -2
  63. package/dist/ts/ts/Core/DataContext.js +19 -4
  64. package/dist/ts/ts/Core/DataFile.js +38 -1
  65. package/dist/ts/ts/Core/DataMap.js +111 -5
  66. package/dist/ts/ts/Core/Helper/Collections.js +106 -5
  67. package/dist/ts/ts/Core/Helper/HashCodes.js +4 -4
  68. package/dist/ts/ts/Core/Helper/Identifier.js +100 -2
  69. package/dist/ts/ts/Core/Helper/Regex.js +134 -2
  70. package/dist/ts/ts/Core/Helper/SemVer.js +23 -2
  71. package/dist/ts/ts/Core/IdentifierSetters.d.ts +3 -1
  72. package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -1
  73. package/dist/ts/ts/Core/IdentifierSetters.js +27 -1
  74. package/dist/ts/ts/Core/OntologyAnnotation.js +4 -1
  75. package/dist/ts/ts/Core/OntologySourceReference.js +8 -1
  76. package/dist/ts/ts/Core/Person.js +8 -1
  77. package/dist/ts/ts/Core/Process/ColumnIndex.js +121 -4
  78. package/dist/ts/ts/Core/Process/Component.js +37 -4
  79. package/dist/ts/ts/Core/Process/Factor.js +9 -4
  80. package/dist/ts/ts/Core/Process/FactorValue.js +61 -4
  81. package/dist/ts/ts/Core/Process/Material.js +14 -4
  82. package/dist/ts/ts/Core/Process/MaterialAttribute.js +41 -3
  83. package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +67 -4
  84. package/dist/ts/ts/Core/Process/MaterialType.js +15 -1
  85. package/dist/ts/ts/Core/Process/Process.js +150 -7
  86. package/dist/ts/ts/Core/Process/ProcessInput.js +48 -8
  87. package/dist/ts/ts/Core/Process/ProcessOutput.js +44 -7
  88. package/dist/ts/ts/Core/Process/ProcessParameterValue.js +10 -5
  89. package/dist/ts/ts/Core/Process/ProcessSequence.js +127 -6
  90. package/dist/ts/ts/Core/Process/Protocol.js +78 -4
  91. package/dist/ts/ts/Core/Process/ProtocolParameter.js +6 -2
  92. package/dist/ts/ts/Core/Process/Sample.js +21 -3
  93. package/dist/ts/ts/Core/Process/Source.js +13 -3
  94. package/dist/ts/ts/Core/Publication.js +8 -1
  95. package/dist/ts/ts/Core/Table/ArcTable.js +34 -25
  96. package/dist/ts/ts/Core/Table/ArcTableAux.js +150 -23
  97. package/dist/ts/ts/Core/Table/ArcTables.js +24 -15
  98. package/dist/ts/ts/Core/Table/CompositeCell.js +7 -3
  99. package/dist/ts/ts/Core/Table/CompositeColumn.js +8 -4
  100. package/dist/ts/ts/Core/Table/CompositeHeader.js +18 -15
  101. package/dist/ts/ts/Core/Template.js +12 -2
  102. package/dist/ts/ts/Core/Templates.js +8 -4
  103. package/dist/ts/ts/Core/Value.js +7 -3
  104. package/dist/ts/ts/CrossAsync.js +11 -1
  105. package/dist/ts/ts/FileSystem/Commit.js +18 -0
  106. package/dist/ts/ts/FileSystem/FileSystem.js +8 -3
  107. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +1 -0
  108. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -1
  109. package/dist/ts/ts/FileSystem/FileSystemTree.js +20 -13
  110. package/dist/ts/ts/FileSystem/Path.d.ts +2 -0
  111. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
  112. package/dist/ts/ts/FileSystem/Path.js +17 -3
  113. package/dist/ts/ts/Json/Assay.d.ts +1 -1
  114. package/dist/ts/ts/Json/Assay.js +28 -28
  115. package/dist/ts/ts/Json/Comment.js +10 -10
  116. package/dist/ts/ts/Json/Data.js +6 -6
  117. package/dist/ts/ts/Json/DataMap/DataContext.js +4 -4
  118. package/dist/ts/ts/Json/DataMap/DataMap.js +2 -2
  119. package/dist/ts/ts/Json/Decode.js +14 -9
  120. package/dist/ts/ts/Json/Encode.js +43 -11
  121. package/dist/ts/ts/Json/Investigation.js +40 -22
  122. package/dist/ts/ts/Json/OntologyAnnotation.js +5 -5
  123. package/dist/ts/ts/Json/OntologySourceReference.js +2 -2
  124. package/dist/ts/ts/Json/Person.js +26 -26
  125. package/dist/ts/ts/Json/Process/Component.d.ts +6 -4
  126. package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -1
  127. package/dist/ts/ts/Json/Process/Component.js +27 -7
  128. package/dist/ts/ts/Json/Process/Factor.js +3 -3
  129. package/dist/ts/ts/Json/Process/FactorValue.js +8 -8
  130. package/dist/ts/ts/Json/Process/Material.js +9 -9
  131. package/dist/ts/ts/Json/Process/MaterialAttribute.js +1 -1
  132. package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +8 -8
  133. package/dist/ts/ts/Json/Process/Process.js +12 -12
  134. package/dist/ts/ts/Json/Process/ProcessInput.js +4 -4
  135. package/dist/ts/ts/Json/Process/ProcessOutput.js +3 -3
  136. package/dist/ts/ts/Json/Process/ProcessParameterValue.js +11 -8
  137. package/dist/ts/ts/Json/Process/Protocol.js +13 -13
  138. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +4 -2
  139. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -1
  140. package/dist/ts/ts/Json/Process/ProtocolParameter.js +21 -12
  141. package/dist/ts/ts/Json/Process/Sample.js +14 -14
  142. package/dist/ts/ts/Json/Process/Source.js +9 -9
  143. package/dist/ts/ts/Json/Process/Value.js +1 -1
  144. package/dist/ts/ts/Json/PropertyValue.js +1 -1
  145. package/dist/ts/ts/Json/Publication.js +6 -6
  146. package/dist/ts/ts/Json/ROCrate/LDContext.js +1 -0
  147. package/dist/ts/ts/Json/ROCrate/LDGraph.js +3 -3
  148. package/dist/ts/ts/Json/ROCrate/LDNode.js +19 -19
  149. package/dist/ts/ts/Json/Run.d.ts +11 -0
  150. package/dist/ts/ts/Json/Run.d.ts.map +1 -0
  151. package/dist/ts/ts/Json/Run.js +76 -0
  152. package/dist/ts/ts/Json/StringTable.js +1 -1
  153. package/dist/ts/ts/Json/Study.js +34 -34
  154. package/dist/ts/ts/Json/Table/ArcTable.js +29 -29
  155. package/dist/ts/ts/Json/Table/CellTable.js +6 -6
  156. package/dist/ts/ts/Json/Table/CompositeCell.js +4 -4
  157. package/dist/ts/ts/Json/Table/CompositeHeader.js +2 -2
  158. package/dist/ts/ts/Json/Table/IOType.js +1 -1
  159. package/dist/ts/ts/Json/Table/OATable.js +7 -7
  160. package/dist/ts/ts/Json/Table/Templates.js +92 -6
  161. package/dist/ts/ts/Json/Workflow.d.ts +11 -0
  162. package/dist/ts/ts/Json/Workflow.d.ts.map +1 -0
  163. package/dist/ts/ts/Json/Workflow.js +93 -0
  164. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.js +27 -1
  165. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.js +17 -1
  166. package/dist/ts/ts/Json/context/rocrate/isa_data_context.js +19 -1
  167. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.js +27 -1
  168. package/dist/ts/ts/Json/context/rocrate/isa_material_context.js +20 -1
  169. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.js +18 -1
  170. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +20 -1
  171. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.js +16 -1
  172. package/dist/ts/ts/Json/context/rocrate/isa_person_context.js +25 -1
  173. package/dist/ts/ts/Json/context/rocrate/isa_process_context.js +24 -1
  174. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.js +23 -1
  175. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.js +20 -1
  176. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.js +19 -1
  177. package/dist/ts/ts/Json/context/rocrate/isa_source_context.js +19 -1
  178. package/dist/ts/ts/Json/context/rocrate/isa_study_context.js +35 -1
  179. package/dist/ts/ts/Json/context/rocrate/rocrate_context.js +61 -0
  180. package/dist/ts/ts/Json.d.ts +34 -2
  181. package/dist/ts/ts/Json.d.ts.map +1 -1
  182. package/dist/ts/ts/Json.js +129 -2
  183. package/dist/ts/ts/JsonIO/Assay.js +15 -3
  184. package/dist/ts/ts/JsonIO/Investigation.js +15 -3
  185. package/dist/ts/ts/JsonIO/LDObject.js +17 -3
  186. package/dist/ts/ts/JsonIO/OntologyAnnotation.js +12 -2
  187. package/dist/ts/ts/JsonIO/Person.d.ts +16 -0
  188. package/dist/ts/ts/JsonIO/Person.d.ts.map +1 -0
  189. package/dist/ts/ts/JsonIO/Person.js +67 -0
  190. package/dist/ts/ts/JsonIO/Run.d.ts +10 -0
  191. package/dist/ts/ts/JsonIO/Run.d.ts.map +1 -0
  192. package/dist/ts/ts/JsonIO/Run.js +50 -0
  193. package/dist/ts/ts/JsonIO/Study.js +15 -3
  194. package/dist/ts/ts/JsonIO/Table/Compression.js +3 -3
  195. package/dist/ts/ts/JsonIO/Table/Templates.js +60 -5
  196. package/dist/ts/ts/JsonIO/Workflow.d.ts +10 -0
  197. package/dist/ts/ts/JsonIO/Workflow.d.ts.map +1 -0
  198. package/dist/ts/ts/JsonIO/Workflow.js +50 -0
  199. package/dist/ts/ts/License.d.ts +39 -0
  200. package/dist/ts/ts/License.d.ts.map +1 -0
  201. package/dist/ts/ts/License.js +123 -0
  202. package/dist/ts/ts/ROCrate/Generic/Comment.js +5 -1
  203. package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts +69 -0
  204. package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts.map +1 -0
  205. package/dist/ts/ts/ROCrate/Generic/CreativeWork.js +450 -0
  206. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +1 -0
  207. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +1 -1
  208. package/dist/ts/ts/ROCrate/Generic/Dataset.js +27 -1
  209. package/dist/ts/ts/ROCrate/Generic/DefinedTerm.js +5 -1
  210. package/dist/ts/ts/ROCrate/Generic/File.js +5 -1
  211. package/dist/ts/ts/ROCrate/Generic/LabProcess.js +5 -1
  212. package/dist/ts/ts/ROCrate/Generic/LabProtocol.js +5 -1
  213. package/dist/ts/ts/ROCrate/Generic/Organization.js +5 -1
  214. package/dist/ts/ts/ROCrate/Generic/Person.js +7 -2
  215. package/dist/ts/ts/ROCrate/Generic/PostalAddress.js +5 -1
  216. package/dist/ts/ts/ROCrate/Generic/PropertyValue.js +19 -15
  217. package/dist/ts/ts/ROCrate/Generic/Sample.js +5 -1
  218. package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.js +5 -1
  219. package/dist/ts/ts/ROCrate/LDContext.js +15 -6
  220. package/dist/ts/ts/ROCrate/LDObject.js +53 -17
  221. package/dist/ts/ts/ROCrateIO.d.ts +9 -3
  222. package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
  223. package/dist/ts/ts/ROCrateIO.js +67 -14
  224. package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +18 -15
  225. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +5 -4
  226. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +40 -17
  227. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +4 -4
  228. package/dist/ts/ts/Spreadsheet/ArcAssay.js +30 -15
  229. package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +32 -18
  230. package/dist/ts/ts/Spreadsheet/ArcRun.js +23 -8
  231. package/dist/ts/ts/Spreadsheet/ArcStudy.js +22 -7
  232. package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +23 -8
  233. package/dist/ts/ts/Spreadsheet/CollectionAux.js +75 -5
  234. package/dist/ts/ts/Spreadsheet/DataMap.js +1 -1
  235. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js +4 -4
  236. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js +8 -8
  237. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js +4 -4
  238. package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +6 -6
  239. package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +1 -1
  240. package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +2 -2
  241. package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js +6 -3
  242. package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js +9 -3
  243. package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +6 -4
  244. package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +7 -5
  245. package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +1 -1
  246. package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +10 -8
  247. package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +5 -5
  248. package/dist/ts/ts/Spreadsheet/Metadata/Run.js +6 -6
  249. package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +246 -10
  250. package/dist/ts/ts/Spreadsheet/Metadata/Study.js +19 -13
  251. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +5 -5
  252. package/dist/ts/ts/Template.Web.js +5 -1
  253. package/dist/ts/ts/ValidationPackages/ValidationPackage.js +8 -1
  254. package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js +10 -3
  255. package/dist/ts/ts/WebRequest/WebRequest.Node.js +1 -0
  256. package/dist/ts/ts/Xlsx.d.ts +21 -1
  257. package/dist/ts/ts/Xlsx.d.ts.map +1 -1
  258. package/dist/ts/ts/Xlsx.js +81 -1
  259. package/dist/ts/ts/Yaml/ValidationPackage.js +18 -2
  260. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -2
  261. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js +27 -4
  262. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/FableJS.fs.js +14 -3
  263. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/HashCodes.fs.js +30 -4
  264. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/PropertyHelper.fs.js +5 -1
  265. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.js +65 -2
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  269. package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +188 -11
  270. package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +80 -2
  271. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js +63 -4
  272. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js +17 -7
  273. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/CellBuilder.fs.js +198 -0
  274. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Expression.fs.js +46 -0
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  276. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Types.fs.js +307 -0
  277. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js +38 -2
  278. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsColumn.fs.js +11 -4
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  280. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js +9 -2
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  282. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js +31 -1
  283. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Cell.fs.js +65 -0
  284. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Column.fs.js +38 -0
  285. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Row.fs.js +38 -0
  286. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Table.fs.js +34 -0
  287. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Value.fs.js +49 -3
  288. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Workbook.fs.js +44 -0
  289. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Worksheet.fs.js +129 -0
  290. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRange.fs.js +9 -2
  291. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js +82 -3
  292. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeBase.fs.js +12 -3
  293. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeColumn.fs.js +17 -2
  294. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeRow.fs.js +9 -2
  295. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTable.fs.js +12 -5
  296. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTableField.fs.js +12 -3
  297. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +2 -2
  298. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js +42 -3
  299. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Json.fs.js +53 -0
  300. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Table.fs.js +9 -9
  301. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Workbook.fs.js +1 -1
  302. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Worksheet.fs.js +2 -2
  303. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Xlsx.fs.js +5 -1
  304. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js +730 -23
  305. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js +192 -7
  306. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js +45 -1
  307. package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js +15 -2
  308. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.js +1383 -15
  309. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.js +45 -4
  310. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.js +10 -0
  311. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +5 -5
  312. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.js +16 -6
  313. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +26 -23
  314. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +1 -1
  315. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +8 -8
  316. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +18 -2
  317. package/package.json +1 -1
  318. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts +0 -2
  319. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +0 -1
  320. package/dist/ts/ts/FileSystem/DefaultGitattributes.js +0 -3
  321. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts +0 -2
  322. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +0 -1
  323. package/dist/ts/ts/FileSystem/DefaultGitignore.js +0 -3
@@ -1,9 +1,9 @@
1
- import { ofArray, collect, sortBy, ofSeq, length, iterateIndexed, toArray as toArray$1, exists, reverse, map as map$2, fold as fold$1, empty, cons, singleton as singleton$1, isEmpty, tail, head } from '../../../node_modules/@fable-org/fable-library-js/List.js';
2
- import { map, item, unzip } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
3
- import { fold, toArray, delay, map as map$1, collect as collect$1, singleton, tryFind } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
1
+ import { reverse, map, fold, cons, singleton, isEmpty, head, tail, empty, ofArray, toArray, exists, collect as collect$1, sortBy, ofSeq, length, iterateIndexed } from '../../../node_modules/@fable-org/fable-library-js/List.js';
2
+ import { map as map$1, item, unzip } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
3
+ import { tryFind, toArray as toArray$1, delay, map as map$2, collect, singleton as singleton$1, fold as fold$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
4
4
  import { FsWorksheet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
5
5
  import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
6
- import { toStringCellColumns, fixDeprecatedIOHeader, ColumnValueRefs_fromStringCellColumns } from './CompositeColumn.js';
6
+ import { fromStringCellColumns, ColumnValueRefs_fromStringCellColumns, fixDeprecatedIOHeader, toStringCellColumns } from './CompositeColumn.js';
7
7
  import { comparePrimitives } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
8
8
  import { ArcTableValues } from '../../Core/Table/ArcTableAux.js';
9
9
  import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
@@ -16,14 +16,14 @@ import { Dictionary_tryGet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha
16
16
  import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
17
17
 
18
18
  function Aux_List_groupWhen(f, list) {
19
- return reverse(map$2(reverse, fold$1((acc, e) => {
19
+ return reverse(map(reverse, fold((acc, e) => {
20
20
  const matchValue = f(e);
21
21
  if (matchValue) {
22
- return cons(singleton$1(e), acc);
22
+ return cons(singleton(e), acc);
23
23
  } else if (!isEmpty(acc)) {
24
24
  return cons(cons(e, head(acc)), tail(acc));
25
25
  } else {
26
- return singleton$1(singleton$1(e));
26
+ return singleton(singleton(e));
27
27
  }
28
28
  }, empty(), list)));
29
29
  }
@@ -69,7 +69,7 @@ function classifyColumnOrder(column) {
69
69
  }
70
70
  const helperColumnStrings = ofArray(["Term Source REF", "Term Accession Number", "Unit", "Data Format", "Data Selector Format"]);
71
71
  function groupColumnsByHeader(stringCellColumns) {
72
- return map(toArray$1, toArray$1(Aux_List_groupWhen((c) => {
72
+ return map$1(toArray, toArray(Aux_List_groupWhen((c) => {
73
73
  const v = item(0, c);
74
74
  return !exists((s) => v.startsWith(s), helperColumnStrings);
75
75
  }, ofArray(stringCellColumns))));
@@ -77,10 +77,13 @@ function groupColumnsByHeader(stringCellColumns) {
77
77
  function tryAnnotationTable(sheet) {
78
78
  return tryFind((t) => t.Name.startsWith("annotationTable"), sheet.Tables);
79
79
  }
80
+ function composeColumns(stringCellColumns) {
81
+ return map$1(fromStringCellColumns, groupColumnsByHeader(stringCellColumns));
82
+ }
80
83
  function composeArcTableValues(stringCellColumns) {
81
84
  const valueMap = /* @__PURE__ */ new Map([]);
82
85
  const rowCount = item(0, stringCellColumns).length - 1 | 0;
83
- const patternInput = unzip(map((columns) => ColumnValueRefs_fromStringCellColumns(valueMap, columns), groupColumnsByHeader(stringCellColumns)));
86
+ const patternInput = unzip(map$1((columns) => ColumnValueRefs_fromStringCellColumns(valueMap, columns), groupColumnsByHeader(stringCellColumns)));
84
87
  return [patternInput[0], ArcTableValues.fromRefColumns(patternInput[1], valueMap, rowCount)];
85
88
  }
86
89
  function tryFromFsWorksheet(sheet) {
@@ -90,13 +93,13 @@ function tryFromFsWorksheet(sheet) {
90
93
  return void 0;
91
94
  } else {
92
95
  const t = value(matchValue);
93
- const patternInput = composeArcTableValues(map(fixDeprecatedIOHeader, toArray(delay(() => map$1((c) => toArray(delay(() => collect$1((r) => {
96
+ const patternInput = composeArcTableValues(map$1(fixDeprecatedIOHeader, toArray$1(delay(() => map$2((c) => toArray$1(delay(() => collect((r) => {
94
97
  const matchValue_1 = sheet.CellCollection.TryGetCell(r, c);
95
98
  if (matchValue_1 == null) {
96
- return singleton("");
99
+ return singleton$1("");
97
100
  } else {
98
101
  const cell = value(matchValue_1);
99
- return singleton(cell.ValueAsString());
102
+ return singleton$1(cell.ValueAsString());
100
103
  }
101
104
  }, rangeDouble(1, 1, t.RangeAddress.LastAddress.RowNumber)))), rangeDouble(1, 1, t.RangeAddress.LastAddress.ColumnNumber))))));
102
105
  return ArcTable.fromArcTableValues(sheet.Name, Array.from(patternInput[0]), patternInput[1]);
@@ -113,11 +116,11 @@ function toFsWorksheet(index, table) {
113
116
  if (table.ColumnCount === 0) {
114
117
  return ws;
115
118
  } else {
116
- const columns = collect(toStringCellColumns, sortBy(classifyColumnOrder, ofSeq(table.Columns), {
119
+ const columns = collect$1(toStringCellColumns, sortBy(classifyColumnOrder, ofSeq(table.Columns), {
117
120
  Compare: comparePrimitives
118
121
  }));
119
122
  let tableRowCount;
120
- const maxRow = fold((acc, c) => max(acc, length(c)), 0, columns) | 0;
123
+ const maxRow = fold$1((acc, c) => max(acc, length(c)), 0, columns) | 0;
121
124
  tableRowCount = maxRow === 1 ? 2 : maxRow;
122
125
  const tableColumnCount = length(columns) | 0;
123
126
  const name = index == null ? "annotationTable" : `${"annotationTable"}${value(index)}`;
@@ -146,4 +149,4 @@ function toFsWorksheet(index, table) {
146
149
  }
147
150
  }
148
151
 
149
- export { Aux_List_groupWhen, classifyColumnOrder, classifyHeaderOrder, composeArcTableValues, groupColumnsByHeader, helperColumnStrings, toFsWorksheet, tryAnnotationTable, tryFromFsWorksheet };
152
+ export { Aux_List_groupWhen, classifyColumnOrder, classifyHeaderOrder, composeArcTableValues, composeColumns, groupColumnsByHeader, helperColumnStrings, toFsWorksheet, tryAnnotationTable, tryFromFsWorksheet };
@@ -1,4 +1,4 @@
1
- import { defaultArg, bind, unwrap, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
1
+ import { map, unwrap, bind, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
2
2
  import { item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
3
3
  import { CompositeCell } from '../../Core/Table/CompositeCell.js';
4
4
  import { Option_fromValueWithDefault } from '../../Core/Helper/Collections.js';
@@ -23,10 +23,11 @@ function dataFromStringCells(format, selectorFormat, cellValues) {
23
23
  return CompositeCell.createDataFromString(item(0, cellValues), unwrap(format_1), unwrap(selectorFormat_1));
24
24
  }
25
25
  function toStringCells(isTerm, hasUnit, cell) {
26
+ let v, v_1, v_2;
26
27
  switch (cell.tag) {
27
28
  case /* Term */
28
29
  0:
29
- if (cell.fields[0], hasUnit) {
30
+ if (v = cell.fields[0], hasUnit) {
30
31
  const v_6 = cell.fields[0];
31
32
  return [v_6.NameText, "", defaultArg(v_6.TermSourceREF, ""), v_6.TermAccessionOntobeeUrl];
32
33
  } else {
@@ -47,10 +48,10 @@ function toStringCells(isTerm, hasUnit, cell) {
47
48
  return [defaultArg(d.Name, ""), format, selectorFormat];
48
49
  }
49
50
  default:
50
- if (cell.fields[0], hasUnit) {
51
+ if (v_1 = cell.fields[0], hasUnit) {
51
52
  const v_3 = cell.fields[0];
52
53
  return [v_3, "", "", ""];
53
- } else if (cell.fields[0], isTerm) {
54
+ } else if (v_2 = cell.fields[0], isTerm) {
54
55
  const v_4 = cell.fields[0];
55
56
  return [v_4, "", ""];
56
57
  } else {
@@ -1,23 +1,24 @@
1
- import { map, skip, item, setItem, tryItem } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
1
+ import { skip, item, setItem, map, tryItem } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
2
2
  import { IOType, CompositeHeader_Output, CompositeHeader_Input, IOType_Source } from '../../Core/Table/CompositeHeader.js';
3
3
  import { toString, FSharpRef } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
4
- import { toStringCells, fromStringCells } from './CompositeHeader.js';
5
- import { exists, toArray, toList, delay, reduce, map as map$1, append, singleton as singleton$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
4
+ import { fromStringCells, toStringCells } from './CompositeHeader.js';
5
+ import { toArray, delay, map as map$1, exists, toList, append, singleton, reduce } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
6
6
  import { rangeDouble } from '../../../node_modules/@fable-org/fable-library-js/Range.js';
7
- import { value, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
8
- import '../../Core/Helper/Url.js';
9
- import { defaultOf, stringHash } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
10
- import { ofArray, singleton } from '../../../node_modules/@fable-org/fable-library-js/List.js';
11
- import { tryGetValue, getItemFromDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
12
- import { mergeHashes } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js';
7
+ import { CompositeColumn } from '../../Core/Table/CompositeColumn.js';
8
+ import { FsCell } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js';
13
9
  import { toStringCells as toStringCells$1 } from './CompositeCell.js';
10
+ import { defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
11
+ import { ofArray, singleton as singleton$1, map as map$2 } from '../../../node_modules/@fable-org/fable-library-js/List.js';
12
+ import { stringHash, defaultOf } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
14
13
  import { ColumnValueRefs_Sparse, ensureCellHashInValueMap, ColumnValueRefs_Constant } from '../../Core/Table/ArcTableAux.js';
14
+ import { mergeHashes } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js';
15
+ import { tryGetValue, getItemFromDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
15
16
 
16
17
  function fixDeprecatedIOHeader(stringCellCol) {
17
18
  if (stringCellCol.length === 0) {
18
19
  throw new Error("Can't fix IOHeader Invalid column, neither header nor values given");
19
20
  }
20
- skip(1, stringCellCol);
21
+ const values = skip(1, stringCellCol);
21
22
  const matchValue = IOType.ofString(item(0, stringCellCol));
22
23
  switch (matchValue.tag) {
23
24
  case /* FreeText */
@@ -34,6 +35,24 @@ function fixDeprecatedIOHeader(stringCellCol) {
34
35
  }
35
36
  }
36
37
  }
38
+ function fromStringCellColumns(columns) {
39
+ const patternInput = fromStringCells(map((c) => item(0, c), columns));
40
+ const l = item(0, columns).length | 0;
41
+ const cells = Array.from(toArray(delay(() => map$1((i) => patternInput[1](map((c_1) => item(i, c_1), columns)), rangeDouble(1, 1, l - 1)))));
42
+ return CompositeColumn.create(patternInput[0], cells);
43
+ }
44
+ function stringCellColumnsOfFsColumns(columns) {
45
+ return map((c) => {
46
+ c.ToDenseColumn();
47
+ return map((cell) => cell.ValueAsString(), toArray(c.Cells));
48
+ }, columns);
49
+ }
50
+ function fromFsColumns(columns) {
51
+ return fromStringCellColumns(map((c) => {
52
+ c.ToDenseColumn();
53
+ return map((c_1) => c_1.ValueAsString(), toArray(c.Cells));
54
+ }, columns));
55
+ }
37
56
  function toStringCellColumns(column) {
38
57
  const hasUnit = exists((c) => c.isUnitized, column.Cells);
39
58
  const isTerm = column.Header.IsTermColumn;
@@ -43,16 +62,20 @@ function toStringCellColumns(column) {
43
62
  const cells = map((cell) => toStringCells$1(isTerm, hasUnit, cell), toArray(column.Cells));
44
63
  const getCellOrDefault = (ri, ci, cells_1) => defaultArg(tryItem(ci, item(ri, cells_1)), "");
45
64
  if (hasUnit) {
46
- return ofArray([toList(delay(() => append(singleton$1(item(0, header)), delay(() => map$1((i) => getCellOrDefault(i, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(1, header)), delay(() => map$1((i_1) => getCellOrDefault(i_1, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(2, header)), delay(() => map$1((i_2) => getCellOrDefault(i_2, 2, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(3, header)), delay(() => map$1((i_3) => getCellOrDefault(i_3, 3, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
65
+ return ofArray([toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i) => getCellOrDefault(i, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(1, header)), delay(() => map$1((i_1) => getCellOrDefault(i_1, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(2, header)), delay(() => map$1((i_2) => getCellOrDefault(i_2, 2, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(3, header)), delay(() => map$1((i_3) => getCellOrDefault(i_3, 3, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
47
66
  } else if (isTerm) {
48
- return ofArray([toList(delay(() => append(singleton$1(item(0, header)), delay(() => map$1((i_4) => getCellOrDefault(i_4, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(1, header)), delay(() => map$1((i_5) => getCellOrDefault(i_5, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(2, header)), delay(() => map$1((i_6) => getCellOrDefault(i_6, 2, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
67
+ return ofArray([toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i_4) => getCellOrDefault(i_4, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(1, header)), delay(() => map$1((i_5) => getCellOrDefault(i_5, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(2, header)), delay(() => map$1((i_6) => getCellOrDefault(i_6, 2, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
49
68
  } else if (isData) {
50
- return ofArray([toList(delay(() => append(singleton$1(item(0, header)), delay(() => map$1((i_7) => getCellOrDefault(i_7, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(1, header)), delay(() => map$1((i_8) => getCellOrDefault(i_8, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton$1(item(2, header)), delay(() => map$1((i_9) => getCellOrDefault(i_9, 2, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
69
+ return ofArray([toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i_7) => getCellOrDefault(i_7, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(1, header)), delay(() => map$1((i_8) => getCellOrDefault(i_8, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(2, header)), delay(() => map$1((i_9) => getCellOrDefault(i_9, 2, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
51
70
  } else {
52
- return singleton(toList(delay(() => append(singleton$1(item(0, header)), delay(() => map$1((i_10) => item(0, item(i_10, cells)), rangeDouble(0, 1, compositeCells.length - 1)))))));
71
+ return singleton$1(toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i_10) => item(0, item(i_10, cells)), rangeDouble(0, 1, compositeCells.length - 1)))))));
53
72
  }
54
73
  }
74
+ function toFsColumns(column) {
75
+ return map$2((c) => map$2((s) => new FsCell(s), c), toStringCellColumns(column));
76
+ }
55
77
  function ColumnValueRefs_fromStringCellColumns(valueMap, columns) {
78
+ let cellHash;
56
79
  const hashMap = /* @__PURE__ */ new Map([]);
57
80
  const cells = /* @__PURE__ */ new Map([]);
58
81
  let constant = true;
@@ -90,8 +113,8 @@ function ColumnValueRefs_fromStringCellColumns(valueMap, columns) {
90
113
  hashMap.set(hash_2, cellHash_5);
91
114
  cells.set(i - 1, cellHash_5);
92
115
  }
93
- } else if (value(matchValue) | 0, constant) {
94
- value(matchValue) | 0;
116
+ } else if (cellHash = value(matchValue) | 0, constant) {
117
+ const cellHash_1 = value(matchValue) | 0;
95
118
  } else {
96
119
  const cellHash_2 = value(matchValue) | 0;
97
120
  cells.set(i - 1, cellHash_2);
@@ -105,4 +128,4 @@ function ColumnValueRefs_fromStringCellColumns(valueMap, columns) {
105
128
  }
106
129
  }
107
130
 
108
- export { ColumnValueRefs_fromStringCellColumns, fixDeprecatedIOHeader, toStringCellColumns };
131
+ export { ColumnValueRefs_fromStringCellColumns, fixDeprecatedIOHeader, fromFsColumns, fromStringCellColumns, stringCellColumnsOfFsColumns, toFsColumns, toStringCellColumns };
@@ -1,11 +1,11 @@
1
1
  import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
2
2
  import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
4
- import { dataFromStringCells, freeTextFromStringCells, unitizedFromStringCells, termFromStringCells } from './CompositeCell.js';
5
- import { IOType, CompositeHeader_Input, IOType_Data, CompositeHeader_Output, CompositeHeader_Date, CompositeHeader_Performer, CompositeHeader_ProtocolVersion, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolREF, CompositeHeader_Comment, CompositeHeader_FreeText, CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Component, CompositeHeader_ProtocolType } from '../../Core/Table/CompositeHeader.js';
6
- import { item, skip, tryFindIndex, equalsWith } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
4
+ import { unitizedFromStringCells, termFromStringCells, dataFromStringCells, freeTextFromStringCells } from './CompositeCell.js';
5
+ import { CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Component, IOType, CompositeHeader_Input, IOType_Data, CompositeHeader_Output, CompositeHeader_Comment, CompositeHeader_ProtocolType, CompositeHeader_Date, CompositeHeader_Performer, CompositeHeader_ProtocolVersion, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolREF, CompositeHeader_FreeText } from '../../Core/Table/CompositeHeader.js';
6
+ import { equalsWith, item, skip, tryFindIndex } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
7
7
  import { defaultOf } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
8
- import { ActivePatterns_$007CInputColumnHeader$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C, tryParseParameterColumnHeader, tryParseFactorColumnHeader, tryParseCharacteristicColumnHeader, tryParseComponentColumnHeader } from '../../Core/Helper/Regex.js';
8
+ import { ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C, tryParseParameterColumnHeader, tryParseFactorColumnHeader, tryParseCharacteristicColumnHeader, tryParseComponentColumnHeader, ActivePatterns_$007CInputColumnHeader$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CComment$007C_$007C } from '../../Core/Helper/Regex.js';
9
9
  import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
10
10
  import { toArray, delay, append, singleton, empty } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
11
11
 
@@ -1,17 +1,17 @@
1
- import { iterate, iterateIndexed, choose, tryPick, isEmpty, tryFind, map, exists, head, tryHead, delay, append, singleton as singleton$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
2
- import { defaultArg, toArray, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
1
+ import { exists, head, tryHead, delay, append, singleton, iterateIndexed, map, tryFind, choose, tryPick, isEmpty as isEmpty$1, iterate } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
2
+ import { value, defaultArg, toArray, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { getEnumerator } from '../../node_modules/@fable-org/fable-library-js/Util.js';
4
4
  import { fromRows as fromRows$1, toRows } from './Metadata/Assays.js';
5
- import { empty, isEmpty as isEmpty$1, singleton, ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
5
+ import { isEmpty, empty, singleton as singleton$1, ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
6
6
  import { ArcAssay } from '../Core/ArcTypes.js';
7
7
  import { fromRows, toRows as toRows$1 } from './Metadata/Contacts.js';
8
8
  import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
9
- import { SparseRowModule_fromFsRow, SparseRowModule_tryGetValueAt, SparseRowModule_writeToSheet, SparseRowModule_fromValues } from './Metadata/SparseTable.js';
9
+ import { SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
10
10
  import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
11
- import { toConsole, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
11
+ import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
12
12
  import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
13
- import { toFsWorksheet as toFsWorksheet$1, tryFromFsWorksheet } from './AnnotationTable/ArcTable.js';
14
- import { toFsWorksheet, tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DataMapTable/DataMapTable.js';
13
+ import { tryFromFsWorksheet, toFsWorksheet as toFsWorksheet$1 } from './AnnotationTable/ArcTable.js';
14
+ import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DataMapTable/DataMapTable.js';
15
15
 
16
16
  function ArcAssay_fromRows(rows) {
17
17
  const patternInput = exists((row) => {
@@ -24,14 +24,14 @@ function ArcAssay_fromRows(rows) {
24
24
  loop:
25
25
  while (true) {
26
26
  const lastRow = lastRow_mut, assays = assays_mut, contacts = contacts_mut, rowNumber = rowNumber_mut;
27
- let matchResult;
27
+ let matchResult, prefix_2, prefix_3;
28
28
  if (lastRow != null) {
29
29
  if (prefix = value(lastRow), prefix === "ASSAY" ? true : prefix === "ASSAY METADATA") {
30
30
  matchResult = 0;
31
- value(lastRow);
31
+ prefix_2 = value(lastRow);
32
32
  } else if (value(lastRow) === "ASSAY PERFORMERS") {
33
33
  matchResult = 1;
34
- value(lastRow);
34
+ prefix_3 = value(lastRow);
35
35
  } else {
36
36
  matchResult = 2;
37
37
  }
@@ -57,8 +57,8 @@ function ArcAssay_fromRows(rows) {
57
57
  }
58
58
  default: {
59
59
  let matchResult_1, assays_2, contacts_2;
60
- if (isEmpty$1(assays)) {
61
- if (isEmpty$1(contacts)) {
60
+ if (isEmpty(assays)) {
61
+ if (isEmpty(contacts)) {
62
62
  matchResult_1 = 0;
63
63
  } else {
64
64
  matchResult_1 = 1;
@@ -81,6 +81,7 @@ function ArcAssay_fromRows(rows) {
81
81
  }
82
82
  }
83
83
  }
84
+ break;
84
85
  }
85
86
  };
86
87
  if (en["System.Collections.IEnumerator.MoveNext"]()) {
@@ -90,7 +91,7 @@ function ArcAssay_fromRows(rows) {
90
91
  }
91
92
  }
92
93
  function ArcAssay_toRows(assay) {
93
- return delay(() => append(singleton$1(SparseRowModule_fromValues(["ASSAY"])), delay(() => append(toRows("Assay", singleton(assay)), delay(() => append(singleton$1(SparseRowModule_fromValues(["ASSAY PERFORMERS"])), delay(() => toRows$1("Assay Person", ofSeq(assay.Performers)))))))));
94
+ return delay(() => append(singleton(SparseRowModule_fromValues(["ASSAY"])), delay(() => append(toRows("Assay", singleton$1(assay)), delay(() => append(singleton(SparseRowModule_fromValues(["ASSAY PERFORMERS"])), delay(() => toRows$1("Assay Person", ofSeq(assay.Performers)))))))));
94
95
  }
95
96
  function ArcAssay_toMetadataSheet(assay) {
96
97
  const sheet = new FsWorksheet("isa_assay");
@@ -112,6 +113,17 @@ function ArcAssay_fromMetadataSheet(sheet) {
112
113
  return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
113
114
  }
114
115
  }
116
+ function ArcAssay_toMetadataCollection(assay) {
117
+ return map(SparseRowModule_getAllValues, ArcAssay_toRows(assay));
118
+ }
119
+ function ArcAssay_fromMetadataCollection(collection) {
120
+ try {
121
+ return ArcAssay_fromRows(map(SparseRowModule_fromAllValues, collection));
122
+ } catch (err) {
123
+ const arg = err.message;
124
+ return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
125
+ }
126
+ }
115
127
  function ArcAssay_isMetadataSheetName(name) {
116
128
  if (name === "isa_assay") {
117
129
  return true;
@@ -138,7 +150,7 @@ function ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(doc) {
138
150
  const sheets = doc.GetWorksheets();
139
151
  const annotationTables = choose(tryFromFsWorksheet, sheets);
140
152
  const datamapSheet = tryPick(tryFromFsWorksheet$1, sheets);
141
- if (!isEmpty(annotationTables)) {
153
+ if (!isEmpty$1(annotationTables)) {
142
154
  assayMetadata.Tables = Array.from(annotationTables);
143
155
  }
144
156
  assayMetadata.DataMap = datamapSheet;
@@ -165,5 +177,8 @@ function ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay, datamapS
165
177
  }, assay.Tables);
166
178
  return doc;
167
179
  }
180
+ function ARCtrl_ArcAssay__ArcAssay_ToFsWorkbook_6FCE9E49(this$, datamapSheet) {
181
+ return ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$, unwrap(datamapSheet));
182
+ }
168
183
 
169
- export { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F, ArcAssay_fromMetadataSheet, ArcAssay_fromRows, ArcAssay_isMetadataSheet, ArcAssay_isMetadataSheetName, ArcAssay_toMetadataSheet, ArcAssay_toRows, ArcAssay_tryGetMetadataSheet };
184
+ export { ARCtrl_ArcAssay__ArcAssay_ToFsWorkbook_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F, ArcAssay_fromMetadataCollection, ArcAssay_fromMetadataSheet, ArcAssay_fromRows, ArcAssay_isMetadataSheet, ArcAssay_isMetadataSheetName, ArcAssay_toMetadataCollection, ArcAssay_toMetadataSheet, ArcAssay_toRows, ArcAssay_tryGetMetadataSheet };
@@ -1,15 +1,16 @@
1
1
  import { Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
2
- import { ofSeq, map, isEmpty, tail, cons, head, reverse, empty, unzip, concat, append, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
3
- import { Remark } from '../Core/Comment.js';
4
- import { comparePrimitives, getEnumerator, stringHash } from '../../node_modules/@fable-org/fable-library-js/Util.js';
5
- import { Remark_wrapRemark, Comment_fromString, Comment_toString } from './Metadata/Comment.js';
6
- import { SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_fromFsRow, SparseRowModule_tryGetValueAt, SparseTable_FromRows_Z5579EC29, SparseTable__TryGetValueDefault_5BAE6133, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './Metadata/SparseTable.js';
2
+ import { ofArray, map, empty, cons, reverse, unzip, concat, append, ofSeq, isEmpty as isEmpty$1, tail, head } from '../../node_modules/@fable-org/fable-library-js/List.js';
3
+ import { Comment$_$reflection, Remark } from '../Core/Comment.js';
4
+ import { stringHash, getEnumerator, comparePrimitives } from '../../node_modules/@fable-org/fable-library-js/Util.js';
5
+ import { record_type, string_type, list_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
6
+ import { Comment_fromString, Comment_toString, Remark_wrapRemark } from './Metadata/Comment.js';
7
+ import { SparseTable__TryGetValueDefault_5BAE6133, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1, SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_getAllValues, SparseRowModule_fromAllValues, SparseRowModule_fromFsRow, SparseRowModule_writeToSheet } from './Metadata/SparseTable.js';
7
8
  import { addToDict } from '../../node_modules/@fable-org/fable-library-js/MapUtil.js';
8
- import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
9
- import { Option_fromValueWithDefault, ResizeArray_iter } from '../Core/Helper/Collections.js';
10
- import { List_distinctBy, List_distinct } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
9
+ import { defaultArg, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
10
+ import { ResizeArray_iter, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
11
+ import { List_distinct, List_distinctBy } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
11
12
  import { ArcInvestigation, ArcStudy } from '../Core/ArcTypes.js';
12
- import { iterateIndexed, toList, map as map$1, isEmpty as isEmpty$1, tryFind as tryFind$1, delay, append as append$1, singleton, collect } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
13
+ import { isEmpty, delay, append as append$1, singleton, collect, toList, map as map$1, tryFind as tryFind$1, iterateIndexed } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
13
14
  import { fromRows as fromRows$3, toRows } from './Metadata/OntologySourceReference.js';
14
15
  import { fromRows as fromRows$2, toRows as toRows$1 } from './Metadata/Publication.js';
15
16
  import { fromRows as fromRows$1, toRows as toRows$2 } from './Metadata/Contacts.js';
@@ -30,6 +31,9 @@ class ArcInvestigation_InvestigationInfo extends Record {
30
31
  this.Comments = Comments;
31
32
  }
32
33
  }
34
+ function ArcInvestigation_InvestigationInfo_$reflection() {
35
+ return record_type("ARCtrl.Spreadsheet.ArcInvestigation.InvestigationInfo", [], ArcInvestigation_InvestigationInfo, () => [["Identifier", string_type], ["Title", string_type], ["Description", string_type], ["SubmissionDate", string_type], ["PublicReleaseDate", string_type], ["Comments", list_type(Comment$_$reflection())]]);
36
+ }
33
37
  function ArcInvestigation_InvestigationInfo_create(identifier, title, description, submissionDate, publicReleaseDate, comments) {
34
38
  return new ArcInvestigation_InvestigationInfo(identifier, title, description, submissionDate, publicReleaseDate, comments);
35
39
  }
@@ -83,7 +87,7 @@ function ArcInvestigation_fromParts(investigationInfo, ontologySourceReference,
83
87
  return ArcInvestigation.make(investigationInfo.Identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications_1, contacts_1, assays_1, studies_1, [], [], registeredStudyIdentifiers, comments, remarks_1);
84
88
  }
85
89
  function ArcInvestigation_fromRows(rows) {
86
- if (isEmpty$1(rows)) {
90
+ if (isEmpty(rows)) {
87
91
  throw new Error("isa_investigation sheet in Investigation file is empty");
88
92
  }
89
93
  const en = getEnumerator(rows);
@@ -92,32 +96,32 @@ function ArcInvestigation_fromRows(rows) {
92
96
  loop:
93
97
  while (true) {
94
98
  const lastLine = lastLine_mut, ontologySourceReferences = ontologySourceReferences_mut, investigationInfo = investigationInfo_mut, publications = publications_mut, contacts = contacts_mut, studies = studies_mut, remarks = remarks_mut, lineNumber = lineNumber_mut;
95
- let matchResult;
99
+ let matchResult, k_5, k_6, k_7, k_8, k_9;
96
100
  if (lastLine != null) {
97
101
  switch (value(lastLine)) {
98
102
  case "ONTOLOGY SOURCE REFERENCE": {
99
103
  matchResult = 0;
100
- value(lastLine);
104
+ k_5 = value(lastLine);
101
105
  break;
102
106
  }
103
107
  case "INVESTIGATION": {
104
108
  matchResult = 1;
105
- value(lastLine);
109
+ k_6 = value(lastLine);
106
110
  break;
107
111
  }
108
112
  case "INVESTIGATION PUBLICATIONS": {
109
113
  matchResult = 2;
110
- value(lastLine);
114
+ k_7 = value(lastLine);
111
115
  break;
112
116
  }
113
117
  case "INVESTIGATION CONTACTS": {
114
118
  matchResult = 3;
115
- value(lastLine);
119
+ k_8 = value(lastLine);
116
120
  break;
117
121
  }
118
122
  case "STUDY": {
119
123
  matchResult = 4;
120
- value(lastLine);
124
+ k_9 = value(lastLine);
121
125
  break;
122
126
  }
123
127
  default:
@@ -224,6 +228,7 @@ function ArcInvestigation_fromRows(rows) {
224
228
  return ArcInvestigation_fromParts(investigationInfo, ontologySourceReferences, publications, contacts, patternInput_5[0], patternInput_5[1], remarks);
225
229
  }
226
230
  }
231
+ break;
227
232
  }
228
233
  };
229
234
  let arcInvestigation;
@@ -250,7 +255,7 @@ function ArcInvestigation_toRows(investigation) {
250
255
  const i = i_mut, l = l_mut, nl = nl_mut;
251
256
  const matchValue = tryFind(i, rm);
252
257
  if (matchValue == null) {
253
- if (!isEmpty(l)) {
258
+ if (!isEmpty$1(l)) {
254
259
  i_mut = i + 1;
255
260
  l_mut = tail(l);
256
261
  nl_mut = cons(head(l), nl);
@@ -274,6 +279,12 @@ function ArcInvestigation_toRows(investigation) {
274
279
  }
275
280
  })();
276
281
  }
282
+ function ArcInvestigation_toMetadataCollection(investigation) {
283
+ return map$1(SparseRowModule_getAllValues, ArcInvestigation_toRows(investigation));
284
+ }
285
+ function ArcInvestigation_fromMetadataCollection(collection) {
286
+ return ArcInvestigation_fromRows(map$1(SparseRowModule_fromAllValues, collection));
287
+ }
277
288
  function ArcInvestigation_isMetadataSheetName(name) {
278
289
  if (name === "isa_investigation") {
279
290
  return true;
@@ -312,5 +323,8 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF
312
323
  return toFail(printf("Could not write investigation to spreadsheet: %s"))(arg);
313
324
  }
314
325
  }
326
+ function ARCtrl_ArcInvestigation__ArcInvestigation_ToFsWorkbook(this$) {
327
+ return ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(this$);
328
+ }
315
329
 
316
- export { ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ArcInvestigation_InvestigationInfo, ArcInvestigation_InvestigationInfo_FromSparseTable_3ECCA699, ArcInvestigation_InvestigationInfo_ToSparseTable_Z720BD3FF, ArcInvestigation_InvestigationInfo_create, ArcInvestigation_InvestigationInfo_fromRows, ArcInvestigation_InvestigationInfo_get_Labels, ArcInvestigation_InvestigationInfo_toRows_Z720BD3FF, ArcInvestigation_fromParts, ArcInvestigation_fromRows, ArcInvestigation_isMetadataSheet, ArcInvestigation_isMetadataSheetName, ArcInvestigation_toRows, ArcInvestigation_tryGetMetadataSheet };
330
+ export { ARCtrl_ArcInvestigation__ArcInvestigation_ToFsWorkbook, ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ArcInvestigation_InvestigationInfo, ArcInvestigation_InvestigationInfo_$reflection, ArcInvestigation_InvestigationInfo_FromSparseTable_3ECCA699, ArcInvestigation_InvestigationInfo_ToSparseTable_Z720BD3FF, ArcInvestigation_InvestigationInfo_create, ArcInvestigation_InvestigationInfo_fromRows, ArcInvestigation_InvestigationInfo_get_Labels, ArcInvestigation_InvestigationInfo_toRows_Z720BD3FF, ArcInvestigation_fromMetadataCollection, ArcInvestigation_fromParts, ArcInvestigation_fromRows, ArcInvestigation_isMetadataSheet, ArcInvestigation_isMetadataSheetName, ArcInvestigation_toMetadataCollection, ArcInvestigation_toRows, ArcInvestigation_tryGetMetadataSheet };
@@ -5,12 +5,12 @@ import { empty, ofSeq } from '../../node_modules/@fable-org/fable-library-js/Lis
5
5
  import { ArcRun } from '../Core/ArcTypes.js';
6
6
  import { fromRows, toRows as toRows$1 } from './Metadata/Contacts.js';
7
7
  import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
8
- import { SparseRowModule_fromFsRow, SparseRowModule_tryGetValueAt, SparseRowModule_writeToSheet, SparseRowModule_fromValues } from './Metadata/SparseTable.js';
9
- import { iterateIndexed, choose, tryPick, isEmpty, tryFind, map, delay, append, singleton } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
8
+ import { SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
9
+ import { delay, append, singleton, iterateIndexed, map, tryFind, choose, tryPick, isEmpty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
10
10
  import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
11
- import { toConsole, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
11
+ import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
12
12
  import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
13
- import { toFsWorksheet, tryFromFsWorksheet } from './AnnotationTable/ArcTable.js';
13
+ import { tryFromFsWorksheet, toFsWorksheet } from './AnnotationTable/ArcTable.js';
14
14
  import { tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DataMapTable/DataMapTable.js';
15
15
 
16
16
  function ArcRun_fromRows(rows) {
@@ -19,17 +19,17 @@ function ArcRun_fromRows(rows) {
19
19
  loop:
20
20
  while (true) {
21
21
  const lastRow = lastRow_mut, run = run_mut, performers = performers_mut, rowNumber = rowNumber_mut;
22
- let matchResult;
22
+ let matchResult, prefix_2, prefix_3;
23
23
  if (lastRow != null) {
24
24
  switch (value(lastRow)) {
25
25
  case "RUN": {
26
26
  matchResult = 0;
27
- value(lastRow);
27
+ prefix_2 = value(lastRow);
28
28
  break;
29
29
  }
30
30
  case "RUN PERFORMERS": {
31
31
  matchResult = 1;
32
- value(lastRow);
32
+ prefix_3 = value(lastRow);
33
33
  break;
34
34
  }
35
35
  default:
@@ -64,6 +64,7 @@ function ArcRun_fromRows(rows) {
64
64
  return ArcRun.create(createMissingIdentifier(), void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, Array.from(performers));
65
65
  }
66
66
  }
67
+ break;
67
68
  }
68
69
  };
69
70
  if (en["System.Collections.IEnumerator.MoveNext"]()) {
@@ -90,6 +91,17 @@ function ArcRun_fromMetadataSheet(sheet) {
90
91
  return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
91
92
  }
92
93
  }
94
+ function ArcRun_toMetadataCollection(run) {
95
+ return map(SparseRowModule_getAllValues, ArcRun_toRows(run));
96
+ }
97
+ function ArcRun_fromMetadataCollection(collection) {
98
+ try {
99
+ return ArcRun_fromRows(map(SparseRowModule_fromAllValues, collection));
100
+ } catch (err) {
101
+ const arg = err.message;
102
+ return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
103
+ }
104
+ }
93
105
  function ArcRun_isMetadataSheetName(name) {
94
106
  return name === "isa_run";
95
107
  }
@@ -132,5 +144,8 @@ function ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(run) {
132
144
  }, run.Tables);
133
145
  return doc;
134
146
  }
147
+ function ARCtrl_ArcRun__ArcRun_ToFsWorkbook(this$) {
148
+ return ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$);
149
+ }
135
150
 
136
- export { ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ArcRun_fromMetadataSheet, ArcRun_fromRows, ArcRun_isMetadataSheet, ArcRun_isMetadataSheetName, ArcRun_toMetadataSheet, ArcRun_toRows, ArcRun_tryGetMetadataSheet };
151
+ export { ARCtrl_ArcRun__ArcRun_ToFsWorkbook, ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ArcRun_fromMetadataCollection, ArcRun_fromMetadataSheet, ArcRun_fromRows, ArcRun_isMetadataSheet, ArcRun_isMetadataSheetName, ArcRun_toMetadataCollection, ArcRun_toMetadataSheet, ArcRun_toRows, ArcRun_tryGetMetadataSheet };
@@ -1,17 +1,17 @@
1
1
  import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
2
- import { iterate, iterateIndexed, append, tryPick, tryFind, map } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
3
- import { SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_fromValues } from './Metadata/SparseTable.js';
2
+ import { iterateIndexed, append, map, tryFind, tryPick, iterate } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
3
+ import { SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
4
4
  import { toRows, fromRows } from './Metadata/Study.js';
5
5
  import { ArcStudy } from '../Core/ArcTypes.js';
6
- import { defaultArg, toArray, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
6
+ import { defaultArg, value, toArray, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
7
7
  import { empty } from '../../node_modules/@fable-org/fable-library-js/List.js';
8
8
  import { getEnumerator } from '../../node_modules/@fable-org/fable-library-js/Util.js';
9
- import { toConsole, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
9
+ import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
10
10
  import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
11
11
  import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
12
12
  import { ResizeArray_choose, ResizeArray_isEmpty } from '../Core/Helper/Collections.js';
13
- import { toFsWorksheet as toFsWorksheet$1, tryFromFsWorksheet } from './AnnotationTable/ArcTable.js';
14
- import { toFsWorksheet, tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DataMapTable/DataMapTable.js';
13
+ import { tryFromFsWorksheet, toFsWorksheet as toFsWorksheet$1 } from './AnnotationTable/ArcTable.js';
14
+ import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DataMapTable/DataMapTable.js';
15
15
 
16
16
  function ArcStudy_toMetadataSheet(study, assays) {
17
17
  let source_1;
@@ -34,6 +34,18 @@ function ArcStudy_fromMetadataSheet(sheet) {
34
34
  return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
35
35
  }
36
36
  }
37
+ function ArcStudy_toMetadataCollection(study, assays) {
38
+ let source_1;
39
+ return map(SparseRowModule_getAllValues, (source_1 = toRows(study, assays), append([SparseRowModule_fromValues(["STUDY"])], source_1)));
40
+ }
41
+ function ArcStudy_fromMetadataCollection(collection) {
42
+ try {
43
+ return defaultArg(ArcStudy_fromRows(map(SparseRowModule_fromAllValues, collection)), [ArcStudy.create(createMissingIdentifier()), empty()]);
44
+ } catch (err) {
45
+ const arg = err.message;
46
+ return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
47
+ }
48
+ }
37
49
  function ArcStudy_isMetadataSheetName(name) {
38
50
  if (name === "isa_study") {
39
51
  return true;
@@ -88,5 +100,8 @@ function ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(study, assays,
88
100
  }, study.Tables);
89
101
  return doc;
90
102
  }
103
+ function ARCtrl_ArcStudy__ArcStudy_ToFsWorkbook_257FC1F0(this$, assays, datamapSheet) {
104
+ return ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$, unwrap(assays), unwrap(datamapSheet));
105
+ }
91
106
 
92
- export { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522, ArcStudy_fromMetadataSheet, ArcStudy_fromRows, ArcStudy_isMetadataSheet, ArcStudy_isMetadataSheetName, ArcStudy_toMetadataSheet, ArcStudy_tryGetMetadataSheet };
107
+ export { ARCtrl_ArcStudy__ArcStudy_ToFsWorkbook_257FC1F0, ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522, ArcStudy_fromMetadataCollection, ArcStudy_fromMetadataSheet, ArcStudy_fromRows, ArcStudy_isMetadataSheet, ArcStudy_isMetadataSheetName, ArcStudy_toMetadataCollection, ArcStudy_toMetadataSheet, ArcStudy_tryGetMetadataSheet };