@nfdi4plants/arctrl 3.0.0-beta.4 → 3.0.0-beta.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (323) hide show
  1. package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +894 -4
  2. package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +121 -3
  3. package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +279 -1
  4. package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +101 -2
  5. package/dist/ts/node_modules/@fable-org/fable-library-js/Choice.js +187 -0
  6. package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +156 -2
  7. package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +183 -7
  8. package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +217 -5
  9. package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +154 -5
  10. package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +20 -1
  11. package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Collections.js +30 -0
  12. package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +68 -1
  13. package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +6 -1
  14. package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +98 -1
  15. package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +18 -1
  16. package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +601 -5
  17. package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +10 -1
  18. package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +760 -16
  19. package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +26 -1
  20. package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +18 -8
  21. package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +36 -4
  22. package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +35 -1
  23. package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +26 -1
  24. package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +355 -1
  25. package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +21 -2
  26. package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +133 -1
  27. package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +543 -8
  28. package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +53 -4
  29. package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +673 -41
  30. package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +197 -4
  31. package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +128 -3
  32. package/dist/ts/node_modules/@fable-org/fable-library-js/SystemException.js +8 -0
  33. package/dist/ts/node_modules/@fable-org/fable-library-js/TimeSpan.js +180 -0
  34. package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +20 -2
  35. package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +406 -2
  36. package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +2 -2
  37. package/dist/ts/ts/ARC.d.ts +12 -5
  38. package/dist/ts/ts/ARC.d.ts.map +1 -1
  39. package/dist/ts/ts/ARC.js +172 -93
  40. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
  41. package/dist/ts/ts/Contract/ARC.js +8 -1
  42. package/dist/ts/ts/Contract/ArcAssay.js +14 -5
  43. package/dist/ts/ts/Contract/ArcInvestigation.js +10 -1
  44. package/dist/ts/ts/Contract/ArcRun.js +19 -6
  45. package/dist/ts/ts/Contract/ArcStudy.js +19 -6
  46. package/dist/ts/ts/Contract/ArcWorkflow.js +19 -6
  47. package/dist/ts/ts/Contract/Contract.js +42 -1
  48. package/dist/ts/ts/Contract/Datamap.js +61 -17
  49. package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
  50. package/dist/ts/ts/Contract/Git.js +22 -6
  51. package/dist/ts/ts/Contract/License.d.ts +5 -0
  52. package/dist/ts/ts/Contract/License.d.ts.map +1 -0
  53. package/dist/ts/ts/Contract/License.js +34 -0
  54. package/dist/ts/ts/Contract/ValidationPackagesConfig.js +31 -6
  55. package/dist/ts/ts/ContractIO/ContractIO.js +5 -5
  56. package/dist/ts/ts/ContractIO/FileSystemHelper.js +16 -4
  57. package/dist/ts/ts/Conversion.js +321 -48
  58. package/dist/ts/ts/Core/ArcTypes.js +216 -15
  59. package/dist/ts/ts/Core/Comment.js +11 -1
  60. package/dist/ts/ts/Core/CommentList.js +77 -2
  61. package/dist/ts/ts/Core/Conversion.js +123 -43
  62. package/dist/ts/ts/Core/Data.js +9 -2
  63. package/dist/ts/ts/Core/DataContext.js +19 -4
  64. package/dist/ts/ts/Core/DataFile.js +38 -1
  65. package/dist/ts/ts/Core/DataMap.js +111 -5
  66. package/dist/ts/ts/Core/Helper/Collections.js +106 -5
  67. package/dist/ts/ts/Core/Helper/HashCodes.js +4 -4
  68. package/dist/ts/ts/Core/Helper/Identifier.js +100 -2
  69. package/dist/ts/ts/Core/Helper/Regex.js +134 -2
  70. package/dist/ts/ts/Core/Helper/SemVer.js +23 -2
  71. package/dist/ts/ts/Core/IdentifierSetters.d.ts +3 -1
  72. package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -1
  73. package/dist/ts/ts/Core/IdentifierSetters.js +27 -1
  74. package/dist/ts/ts/Core/OntologyAnnotation.js +4 -1
  75. package/dist/ts/ts/Core/OntologySourceReference.js +8 -1
  76. package/dist/ts/ts/Core/Person.js +8 -1
  77. package/dist/ts/ts/Core/Process/ColumnIndex.js +121 -4
  78. package/dist/ts/ts/Core/Process/Component.js +37 -4
  79. package/dist/ts/ts/Core/Process/Factor.js +9 -4
  80. package/dist/ts/ts/Core/Process/FactorValue.js +61 -4
  81. package/dist/ts/ts/Core/Process/Material.js +14 -4
  82. package/dist/ts/ts/Core/Process/MaterialAttribute.js +41 -3
  83. package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +67 -4
  84. package/dist/ts/ts/Core/Process/MaterialType.js +15 -1
  85. package/dist/ts/ts/Core/Process/Process.js +150 -7
  86. package/dist/ts/ts/Core/Process/ProcessInput.js +48 -8
  87. package/dist/ts/ts/Core/Process/ProcessOutput.js +44 -7
  88. package/dist/ts/ts/Core/Process/ProcessParameterValue.js +10 -5
  89. package/dist/ts/ts/Core/Process/ProcessSequence.js +127 -6
  90. package/dist/ts/ts/Core/Process/Protocol.js +78 -4
  91. package/dist/ts/ts/Core/Process/ProtocolParameter.js +6 -2
  92. package/dist/ts/ts/Core/Process/Sample.js +21 -3
  93. package/dist/ts/ts/Core/Process/Source.js +13 -3
  94. package/dist/ts/ts/Core/Publication.js +8 -1
  95. package/dist/ts/ts/Core/Table/ArcTable.js +34 -25
  96. package/dist/ts/ts/Core/Table/ArcTableAux.js +150 -23
  97. package/dist/ts/ts/Core/Table/ArcTables.js +24 -15
  98. package/dist/ts/ts/Core/Table/CompositeCell.js +7 -3
  99. package/dist/ts/ts/Core/Table/CompositeColumn.js +8 -4
  100. package/dist/ts/ts/Core/Table/CompositeHeader.js +18 -15
  101. package/dist/ts/ts/Core/Template.js +12 -2
  102. package/dist/ts/ts/Core/Templates.js +8 -4
  103. package/dist/ts/ts/Core/Value.js +7 -3
  104. package/dist/ts/ts/CrossAsync.js +11 -1
  105. package/dist/ts/ts/FileSystem/Commit.js +18 -0
  106. package/dist/ts/ts/FileSystem/FileSystem.js +8 -3
  107. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +1 -0
  108. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -1
  109. package/dist/ts/ts/FileSystem/FileSystemTree.js +20 -13
  110. package/dist/ts/ts/FileSystem/Path.d.ts +2 -0
  111. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
  112. package/dist/ts/ts/FileSystem/Path.js +17 -3
  113. package/dist/ts/ts/Json/Assay.d.ts +1 -1
  114. package/dist/ts/ts/Json/Assay.js +28 -28
  115. package/dist/ts/ts/Json/Comment.js +10 -10
  116. package/dist/ts/ts/Json/Data.js +6 -6
  117. package/dist/ts/ts/Json/DataMap/DataContext.js +4 -4
  118. package/dist/ts/ts/Json/DataMap/DataMap.js +2 -2
  119. package/dist/ts/ts/Json/Decode.js +14 -9
  120. package/dist/ts/ts/Json/Encode.js +43 -11
  121. package/dist/ts/ts/Json/Investigation.js +40 -22
  122. package/dist/ts/ts/Json/OntologyAnnotation.js +5 -5
  123. package/dist/ts/ts/Json/OntologySourceReference.js +2 -2
  124. package/dist/ts/ts/Json/Person.js +26 -26
  125. package/dist/ts/ts/Json/Process/Component.d.ts +6 -4
  126. package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -1
  127. package/dist/ts/ts/Json/Process/Component.js +27 -7
  128. package/dist/ts/ts/Json/Process/Factor.js +3 -3
  129. package/dist/ts/ts/Json/Process/FactorValue.js +8 -8
  130. package/dist/ts/ts/Json/Process/Material.js +9 -9
  131. package/dist/ts/ts/Json/Process/MaterialAttribute.js +1 -1
  132. package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +8 -8
  133. package/dist/ts/ts/Json/Process/Process.js +12 -12
  134. package/dist/ts/ts/Json/Process/ProcessInput.js +4 -4
  135. package/dist/ts/ts/Json/Process/ProcessOutput.js +3 -3
  136. package/dist/ts/ts/Json/Process/ProcessParameterValue.js +11 -8
  137. package/dist/ts/ts/Json/Process/Protocol.js +13 -13
  138. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +4 -2
  139. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -1
  140. package/dist/ts/ts/Json/Process/ProtocolParameter.js +21 -12
  141. package/dist/ts/ts/Json/Process/Sample.js +14 -14
  142. package/dist/ts/ts/Json/Process/Source.js +9 -9
  143. package/dist/ts/ts/Json/Process/Value.js +1 -1
  144. package/dist/ts/ts/Json/PropertyValue.js +1 -1
  145. package/dist/ts/ts/Json/Publication.js +6 -6
  146. package/dist/ts/ts/Json/ROCrate/LDContext.js +1 -0
  147. package/dist/ts/ts/Json/ROCrate/LDGraph.js +3 -3
  148. package/dist/ts/ts/Json/ROCrate/LDNode.js +19 -19
  149. package/dist/ts/ts/Json/Run.d.ts +11 -0
  150. package/dist/ts/ts/Json/Run.d.ts.map +1 -0
  151. package/dist/ts/ts/Json/Run.js +76 -0
  152. package/dist/ts/ts/Json/StringTable.js +1 -1
  153. package/dist/ts/ts/Json/Study.js +34 -34
  154. package/dist/ts/ts/Json/Table/ArcTable.js +29 -29
  155. package/dist/ts/ts/Json/Table/CellTable.js +6 -6
  156. package/dist/ts/ts/Json/Table/CompositeCell.js +4 -4
  157. package/dist/ts/ts/Json/Table/CompositeHeader.js +2 -2
  158. package/dist/ts/ts/Json/Table/IOType.js +1 -1
  159. package/dist/ts/ts/Json/Table/OATable.js +7 -7
  160. package/dist/ts/ts/Json/Table/Templates.js +92 -6
  161. package/dist/ts/ts/Json/Workflow.d.ts +11 -0
  162. package/dist/ts/ts/Json/Workflow.d.ts.map +1 -0
  163. package/dist/ts/ts/Json/Workflow.js +93 -0
  164. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.js +27 -1
  165. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.js +17 -1
  166. package/dist/ts/ts/Json/context/rocrate/isa_data_context.js +19 -1
  167. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.js +27 -1
  168. package/dist/ts/ts/Json/context/rocrate/isa_material_context.js +20 -1
  169. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.js +18 -1
  170. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +20 -1
  171. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.js +16 -1
  172. package/dist/ts/ts/Json/context/rocrate/isa_person_context.js +25 -1
  173. package/dist/ts/ts/Json/context/rocrate/isa_process_context.js +24 -1
  174. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.js +23 -1
  175. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.js +20 -1
  176. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.js +19 -1
  177. package/dist/ts/ts/Json/context/rocrate/isa_source_context.js +19 -1
  178. package/dist/ts/ts/Json/context/rocrate/isa_study_context.js +35 -1
  179. package/dist/ts/ts/Json/context/rocrate/rocrate_context.js +61 -0
  180. package/dist/ts/ts/Json.d.ts +34 -2
  181. package/dist/ts/ts/Json.d.ts.map +1 -1
  182. package/dist/ts/ts/Json.js +129 -2
  183. package/dist/ts/ts/JsonIO/Assay.js +15 -3
  184. package/dist/ts/ts/JsonIO/Investigation.js +15 -3
  185. package/dist/ts/ts/JsonIO/LDObject.js +17 -3
  186. package/dist/ts/ts/JsonIO/OntologyAnnotation.js +12 -2
  187. package/dist/ts/ts/JsonIO/Person.d.ts +16 -0
  188. package/dist/ts/ts/JsonIO/Person.d.ts.map +1 -0
  189. package/dist/ts/ts/JsonIO/Person.js +67 -0
  190. package/dist/ts/ts/JsonIO/Run.d.ts +10 -0
  191. package/dist/ts/ts/JsonIO/Run.d.ts.map +1 -0
  192. package/dist/ts/ts/JsonIO/Run.js +50 -0
  193. package/dist/ts/ts/JsonIO/Study.js +15 -3
  194. package/dist/ts/ts/JsonIO/Table/Compression.js +3 -3
  195. package/dist/ts/ts/JsonIO/Table/Templates.js +60 -5
  196. package/dist/ts/ts/JsonIO/Workflow.d.ts +10 -0
  197. package/dist/ts/ts/JsonIO/Workflow.d.ts.map +1 -0
  198. package/dist/ts/ts/JsonIO/Workflow.js +50 -0
  199. package/dist/ts/ts/License.d.ts +39 -0
  200. package/dist/ts/ts/License.d.ts.map +1 -0
  201. package/dist/ts/ts/License.js +123 -0
  202. package/dist/ts/ts/ROCrate/Generic/Comment.js +5 -1
  203. package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts +69 -0
  204. package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts.map +1 -0
  205. package/dist/ts/ts/ROCrate/Generic/CreativeWork.js +450 -0
  206. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +1 -0
  207. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +1 -1
  208. package/dist/ts/ts/ROCrate/Generic/Dataset.js +27 -1
  209. package/dist/ts/ts/ROCrate/Generic/DefinedTerm.js +5 -1
  210. package/dist/ts/ts/ROCrate/Generic/File.js +5 -1
  211. package/dist/ts/ts/ROCrate/Generic/LabProcess.js +5 -1
  212. package/dist/ts/ts/ROCrate/Generic/LabProtocol.js +5 -1
  213. package/dist/ts/ts/ROCrate/Generic/Organization.js +5 -1
  214. package/dist/ts/ts/ROCrate/Generic/Person.js +7 -2
  215. package/dist/ts/ts/ROCrate/Generic/PostalAddress.js +5 -1
  216. package/dist/ts/ts/ROCrate/Generic/PropertyValue.js +19 -15
  217. package/dist/ts/ts/ROCrate/Generic/Sample.js +5 -1
  218. package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.js +5 -1
  219. package/dist/ts/ts/ROCrate/LDContext.js +15 -6
  220. package/dist/ts/ts/ROCrate/LDObject.js +53 -17
  221. package/dist/ts/ts/ROCrateIO.d.ts +9 -3
  222. package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
  223. package/dist/ts/ts/ROCrateIO.js +67 -14
  224. package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +18 -15
  225. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +5 -4
  226. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +40 -17
  227. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +4 -4
  228. package/dist/ts/ts/Spreadsheet/ArcAssay.js +30 -15
  229. package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +32 -18
  230. package/dist/ts/ts/Spreadsheet/ArcRun.js +23 -8
  231. package/dist/ts/ts/Spreadsheet/ArcStudy.js +22 -7
  232. package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +23 -8
  233. package/dist/ts/ts/Spreadsheet/CollectionAux.js +75 -5
  234. package/dist/ts/ts/Spreadsheet/DataMap.js +1 -1
  235. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js +4 -4
  236. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js +8 -8
  237. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js +4 -4
  238. package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +6 -6
  239. package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +1 -1
  240. package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +2 -2
  241. package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js +6 -3
  242. package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js +9 -3
  243. package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +6 -4
  244. package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +7 -5
  245. package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +1 -1
  246. package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +10 -8
  247. package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +5 -5
  248. package/dist/ts/ts/Spreadsheet/Metadata/Run.js +6 -6
  249. package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +246 -10
  250. package/dist/ts/ts/Spreadsheet/Metadata/Study.js +19 -13
  251. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +5 -5
  252. package/dist/ts/ts/Template.Web.js +5 -1
  253. package/dist/ts/ts/ValidationPackages/ValidationPackage.js +8 -1
  254. package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js +10 -3
  255. package/dist/ts/ts/WebRequest/WebRequest.Node.js +1 -0
  256. package/dist/ts/ts/Xlsx.d.ts +21 -1
  257. package/dist/ts/ts/Xlsx.d.ts.map +1 -1
  258. package/dist/ts/ts/Xlsx.js +81 -1
  259. package/dist/ts/ts/Yaml/ValidationPackage.js +18 -2
  260. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -2
  261. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js +27 -4
  262. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/FableJS.fs.js +14 -3
  263. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/HashCodes.fs.js +30 -4
  264. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/PropertyHelper.fs.js +5 -1
  265. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.js +65 -2
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  269. package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +188 -11
  270. package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +80 -2
  271. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js +63 -4
  272. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js +17 -7
  273. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/CellBuilder.fs.js +198 -0
  274. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Expression.fs.js +46 -0
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  276. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Types.fs.js +307 -0
  277. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js +38 -2
  278. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsColumn.fs.js +11 -4
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  280. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js +9 -2
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  282. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js +31 -1
  283. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Cell.fs.js +65 -0
  284. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Column.fs.js +38 -0
  285. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Row.fs.js +38 -0
  286. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Table.fs.js +34 -0
  287. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Value.fs.js +49 -3
  288. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Workbook.fs.js +44 -0
  289. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Worksheet.fs.js +129 -0
  290. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRange.fs.js +9 -2
  291. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js +82 -3
  292. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeBase.fs.js +12 -3
  293. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeColumn.fs.js +17 -2
  294. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeRow.fs.js +9 -2
  295. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTable.fs.js +12 -5
  296. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTableField.fs.js +12 -3
  297. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +2 -2
  298. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js +42 -3
  299. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Json.fs.js +53 -0
  300. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Table.fs.js +9 -9
  301. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Workbook.fs.js +1 -1
  302. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Worksheet.fs.js +2 -2
  303. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Xlsx.fs.js +5 -1
  304. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js +730 -23
  305. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js +192 -7
  306. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js +45 -1
  307. package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js +15 -2
  308. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.js +1383 -15
  309. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.js +45 -4
  310. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.js +10 -0
  311. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +5 -5
  312. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.js +16 -6
  313. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +26 -23
  314. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +1 -1
  315. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +8 -8
  316. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +18 -2
  317. package/package.json +1 -1
  318. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts +0 -2
  319. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +0 -1
  320. package/dist/ts/ts/FileSystem/DefaultGitattributes.js +0 -3
  321. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts +0 -2
  322. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +0 -1
  323. package/dist/ts/ts/FileSystem/DefaultGitignore.js +0 -3
@@ -1,13 +1,13 @@
1
1
  import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
2
2
  import { Comment$ } from './Comment.js';
3
- import { tryPick, toList, delay, choose, fold, indexed, map as map$2, append as append$1, singleton as singleton$1, empty as empty$1, zip as zip$1, filter } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
4
- import { value, unwrap, defaultArg, map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Option.js';
5
- import { ResizeArray_filter, Option_fromValueWithDefault } from './Helper/Collections.js';
3
+ import { choose, tryPick, indexed, toList, filter, map as map$1, delay, append, singleton as singleton$1, empty as empty$1, fold, zip as zip$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
4
+ import { defaultArg, map, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
5
+ import { ResizeArray_filter, Option_fromValueWithDefault, ResizeArray_singleton } from './Helper/Collections.js';
6
6
  import { OntologyAnnotation } from './OntologyAnnotation.js';
7
- import { Value_Name, Value, Value_Ontology } from './Value.js';
8
- import { CompositeCell_FreeText, CompositeCell_Unitized, CompositeCell_Term } from './Table/CompositeCell.js';
7
+ import { Value, Value_Ontology, Value_Name } from './Value.js';
8
+ import { CompositeCell_Unitized, CompositeCell_Term, CompositeCell_FreeText } from './Table/CompositeCell.js';
9
9
  import { Component_create_Z2F0B38C7 } from './Process/Component.js';
10
- import { CompositeHeader_Comment, CompositeHeader_Parameter, CompositeHeader_Component, CompositeHeader_Characteristic, CompositeHeader_Factor, CompositeHeader_ProtocolREF, CompositeHeader_Input, IOType_Source, IOType_Data, IOType_Material, IOType_Sample, CompositeHeader_ProtocolType, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolVersion, CompositeHeader_Output } from './Table/CompositeHeader.js';
10
+ import { CompositeHeader_Component, CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Input, IOType_Source, IOType_Data, IOType_Material, IOType_Sample, CompositeHeader_Output, CompositeHeader_ProtocolREF, CompositeHeader_ProtocolType, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolVersion, CompositeHeader_Comment } from './Table/CompositeHeader.js';
11
11
  import { ProtocolParameter } from './Process/ProtocolParameter.js';
12
12
  import { ProcessParameterValue } from './Process/ProcessParameterValue.js';
13
13
  import { FactorValue_create_30BDC49 } from './Process/FactorValue.js';
@@ -15,18 +15,18 @@ import { Factor } from './Process/Factor.js';
15
15
  import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
16
16
  import { MaterialAttributeValue_create_ZE1D108D } from './Process/MaterialAttributeValue.js';
17
17
  import { MaterialAttribute_create_A220A8A } from './Process/MaterialAttribute.js';
18
- import { ProcessInput__get_Name, ProcessInput__isSource, ProcessInput__isSample, ProcessInput__isData, ProcessInput__isMaterial, ProcessInput_getCharacteristicValues_5B3D5BA9, ProcessInput_createSource_Z5E00540E, ProcessInput_createMaterial_4452CB4C, ProcessInput_createRawData_Z721C83C5, ProcessInput_createSample_Z598187B7, ProcessInput_Source, ProcessInput_setCharacteristicValues } from './Process/ProcessInput.js';
19
- import { ProcessOutput__get_Name, ProcessOutput__isSample, ProcessOutput__isData, ProcessOutput__isMaterial, ProcessOutput_getFactorValues_Z42C11600, ProcessOutput_createMaterial_4452CB4C, ProcessOutput_createRawData_Z721C83C5, ProcessOutput_createSample_Z598187B7, ProcessOutput_Sample, ProcessOutput_setFactorValues } from './Process/ProcessOutput.js';
20
- import { int32ToString, comparePrimitives, safeHash, equals, stringHash, arrayHash, equalArrays } from '../../node_modules/@fable-org/fable-library-js/Util.js';
18
+ import { ProcessInput_createSource_Z5E00540E, ProcessInput_createMaterial_4452CB4C, ProcessInput_createRawData_Z721C83C5, ProcessInput_createSample_Z598187B7, ProcessInput_Source, ProcessInput__isSample, ProcessInput__isSource, ProcessInput__get_Name, ProcessInput_setCharacteristicValues, ProcessInput__isData, ProcessInput__isMaterial, ProcessInput_getCharacteristicValues_5B3D5BA9 } from './Process/ProcessInput.js';
19
+ import { ProcessOutput_createMaterial_4452CB4C, ProcessOutput_createRawData_Z721C83C5, ProcessOutput_createSample_Z598187B7, ProcessOutput_Sample, ProcessOutput__isSample, ProcessOutput__get_Name, ProcessOutput_setFactorValues, ProcessOutput__isData, ProcessOutput__isMaterial, ProcessOutput_getFactorValues_Z42C11600 } from './Process/ProcessOutput.js';
20
+ import { int32ToString, stringHash, arrayHash, equalArrays, comparePrimitives, getEnumerator, disposeSafe, safeHash, equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
21
21
  import { ActivePatterns_$007CRegex$007C_$007C } from './Helper/Regex.js';
22
- import { tryGetParameterColumnIndex, tryGetComponentIndex, tryGetCharacteristicColumnIndex, tryGetFactorColumnIndex, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4 } from './Process/ColumnIndex.js';
23
- import { Unchecked_alignByHeaders, Unchecked_tryGetCellAt, getEmptyCellForHeader } from './Table/ArcTableAux.js';
22
+ import { ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, tryGetParameterColumnIndex, tryGetComponentIndex, tryGetCharacteristicColumnIndex, tryGetFactorColumnIndex, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex, ARCtrl_Process_Component__Component_TryGetColumnIndex } from './Process/ColumnIndex.js';
23
+ import { Unchecked_tryGetCellAt, getEmptyCellForHeader, Unchecked_alignByHeaders } from './Table/ArcTableAux.js';
24
24
  import { ArcTable } from './Table/ArcTable.js';
25
- import { map, collect, empty, zip, head, tryPick as tryPick$1, sortBy, append, singleton, initialize, choose as choose$1, ofArray, length, item, mapIndexed, isEmpty } from '../../node_modules/@fable-org/fable-library-js/List.js';
25
+ import { choose as choose$1, singleton, ofArray, isEmpty, length, empty, map as map$2, item, mapIndexed, collect, tryPick as tryPick$1, head, sortBy, append as append$1, zip, initialize } from '../../node_modules/@fable-org/fable-library-js/List.js';
26
26
  import { Source_create_Z5CA08497 } from './Process/Source.js';
27
27
  import { Sample_create_62424AD2 } from './Process/Sample.js';
28
- import { Process_create_Z7C1F7FA9, Process_composeName, Process_make, Process_decomposeName_Z721C83C5 } from './Process/Process.js';
29
- import { Protocol_create_Z414665E7, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType, Protocol_make } from './Process/Protocol.js';
28
+ import { Process_composeName, Process_make, Process_decomposeName_Z721C83C5, Process_create_Z7C1F7FA9 } from './Process/Process.js';
29
+ import { Protocol_make, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType, Protocol_create_Z414665E7 } from './Process/Protocol.js';
30
30
  import { List_groupBy, List_distinct } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
31
31
  import { createMissingIdentifier } from './Helper/Identifier.js';
32
32
  import { boxHashOption, boxHashSeq } from './Helper/HashCodes.js';
@@ -47,7 +47,7 @@ function Person_setSourceAssayComment(person, assayIdentifier) {
47
47
  }
48
48
  function Person_getSourceAssayIdentifiersFromComments(person) {
49
49
  return choose((c) => {
50
- if (defaultArg(map$1((n) => n.startsWith(Person_AssayIdentifierPrefix), c.Name), false)) {
50
+ if (defaultArg(map((n) => n.startsWith(Person_AssayIdentifierPrefix), c.Name), false)) {
51
51
  return c.Value;
52
52
  } else {
53
53
  return void 0;
@@ -86,7 +86,8 @@ function Person_setOrcidFromComments(person) {
86
86
  function Person_setCommentFromORCID(person) {
87
87
  const person_1 = person.Copy();
88
88
  const matchValue = person_1.ORCID;
89
- if (matchValue == null) ; else {
89
+ if (matchValue == null) {
90
+ } else {
90
91
  const orcid = value(matchValue);
91
92
  const comment = Comment$.create(Person_orcidKey, orcid);
92
93
  void person_1.Comments.push(comment);
@@ -99,7 +100,7 @@ function JsonTypes_valueOfCell(value) {
99
100
  case /* Term */
100
101
  0:
101
102
  if (term = value.fields[0], term.isEmpty()) {
102
- value.fields[0];
103
+ const term_1 = value.fields[0];
103
104
  return [void 0, void 0];
104
105
  } else {
105
106
  const term_2 = value.fields[0];
@@ -113,7 +114,7 @@ function JsonTypes_valueOfCell(value) {
113
114
  }
114
115
  case /* Data */
115
116
  3: {
116
- value.fields[0];
117
+ const data = value.fields[0];
117
118
  throw new Error("Data cell should not be parsed to isa value");
118
119
  }
119
120
  default:
@@ -505,7 +506,7 @@ function ProcessParsing_tryGetProtocolVersionGetter(generalI, header) {
505
506
  function ProcessParsing_tryGetInputGetter(generalI, header) {
506
507
  if (header.tag === /* Input */
507
508
  11) {
508
- header.fields[0];
509
+ const io = header.fields[0];
509
510
  return (table) => (i) => {
510
511
  let matchValue;
511
512
  return JsonTypes_composeProcessInput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : value(matchValue)));
@@ -517,7 +518,7 @@ function ProcessParsing_tryGetInputGetter(generalI, header) {
517
518
  function ProcessParsing_tryGetOutputGetter(generalI, header) {
518
519
  if (header.tag === /* Output */
519
520
  12) {
520
- header.fields[0];
521
+ const io = header.fields[0];
521
522
  return (table) => (i) => {
522
523
  let matchValue;
523
524
  return JsonTypes_composeProcessOutput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : value(matchValue)));
@@ -571,11 +572,11 @@ function ProcessParsing_getProcessGetter(processNameRoot, headers) {
571
572
  let inputGetter_1;
572
573
  const matchValue = tryPick((tupledArg_10) => ProcessParsing_tryGetInputGetter(tupledArg_10[0], tupledArg_10[1]), headers_1);
573
574
  if (matchValue == null) {
574
- inputGetter_1 = (table_1) => (i_1) => singleton(ProcessInput_Source(Source_create_Z5CA08497(void 0, `${processNameRoot}_Input_${i_1}`, toList(map$2((f_1) => f_1(table_1)(i_1), charGetters)))));
575
+ inputGetter_1 = (table_1) => (i_1) => singleton(ProcessInput_Source(Source_create_Z5CA08497(void 0, `${processNameRoot}_Input_${i_1}`, toList(map$1((f_1) => f_1(table_1)(i_1), charGetters)))));
575
576
  } else {
576
577
  const inputGetter = value(matchValue);
577
578
  inputGetter_1 = (table) => (i) => {
578
- const chars = toList(map$2((f) => f(table)(i), charGetters));
579
+ const chars = toList(map$1((f) => f(table)(i), charGetters));
579
580
  const input = inputGetter(table)(i);
580
581
  return !(ProcessInput__isSample(input) ? true : ProcessInput__isSource(input)) && !isEmpty(chars) ? ofArray([input, ProcessInput_createSample_Z598187B7(ProcessInput__get_Name(input), chars)]) : singleton(length(chars) > 0 ? ProcessInput_setCharacteristicValues(chars, input) : input);
581
582
  };
@@ -583,22 +584,22 @@ function ProcessParsing_getProcessGetter(processNameRoot, headers) {
583
584
  let outputGetter_1;
584
585
  const matchValue_1 = tryPick((tupledArg_11) => ProcessParsing_tryGetOutputGetter(tupledArg_11[0], tupledArg_11[1]), headers_1);
585
586
  if (matchValue_1 == null) {
586
- outputGetter_1 = (table_3) => (i_3) => singleton(ProcessOutput_Sample(Sample_create_62424AD2(void 0, `${processNameRoot}_Output_${i_3}`, void 0, toList(map$2((f_3) => f_3(table_3)(i_3), factorValueGetters)))));
587
+ outputGetter_1 = (table_3) => (i_3) => singleton(ProcessOutput_Sample(Sample_create_62424AD2(void 0, `${processNameRoot}_Output_${i_3}`, void 0, toList(map$1((f_3) => f_3(table_3)(i_3), factorValueGetters)))));
587
588
  } else {
588
589
  const outputGetter = value(matchValue_1);
589
590
  outputGetter_1 = (table_2) => (i_2) => {
590
- const factors = toList(map$2((f_2) => f_2(table_2)(i_2), factorValueGetters));
591
+ const factors = toList(map$1((f_2) => f_2(table_2)(i_2), factorValueGetters));
591
592
  const output = outputGetter(table_2)(i_2);
592
593
  return !ProcessOutput__isSample(output) && !isEmpty(factors) ? ofArray([output, ProcessOutput_createSample_Z598187B7(ProcessOutput__get_Name(output), void 0, factors)]) : singleton(length(factors) > 0 ? ProcessOutput_setFactorValues(factors, output) : output);
593
594
  };
594
595
  }
595
596
  return (table_4) => (i_4) => {
596
- const pn = map$1((p) => Process_composeName(p, i_4), Option_fromValueWithDefault("", processNameRoot));
597
- const paramvalues = Option_fromValueWithDefault(empty(), map((f_4) => f_4(table_4)(i_4), parameterValueGetters));
598
- const parameters = map$1((list_5) => map((pv) => value(pv.Category), list_5), paramvalues);
599
- const comments = Option_fromValueWithDefault(empty(), map((f_5) => f_5(table_4)(i_4), commentGetters));
597
+ const pn = map((p) => Process_composeName(p, i_4), Option_fromValueWithDefault("", processNameRoot));
598
+ const paramvalues = Option_fromValueWithDefault(empty(), map$2((f_4) => f_4(table_4)(i_4), parameterValueGetters));
599
+ const parameters = map((list_5) => map$2((pv) => value(pv.Category), list_5), paramvalues);
600
+ const comments = Option_fromValueWithDefault(empty(), map$2((f_5) => f_5(table_4)(i_4), commentGetters));
600
601
  let protocol;
601
- const p_1 = Protocol_make(void 0, map$1((f_6) => f_6(table_4)(i_4), protocolREFGetter), map$1((f_7) => f_7(table_4)(i_4), protocolTypeGetter), map$1((f_8) => f_8(table_4)(i_4), protocolDescriptionGetter), map$1((f_9) => f_9(table_4)(i_4), protocolURIGetter), map$1((f_10) => f_10(table_4)(i_4), protocolVersionGetter), parameters, Option_fromValueWithDefault(empty(), map((f_11) => f_11(table_4)(i_4), componentGetters)), void 0);
602
+ const p_1 = Protocol_make(void 0, map((f_6) => f_6(table_4)(i_4), protocolREFGetter), map((f_7) => f_7(table_4)(i_4), protocolTypeGetter), map((f_8) => f_8(table_4)(i_4), protocolDescriptionGetter), map((f_9) => f_9(table_4)(i_4), protocolURIGetter), map((f_10) => f_10(table_4)(i_4), protocolVersionGetter), parameters, Option_fromValueWithDefault(empty(), map$2((f_11) => f_11(table_4)(i_4), componentGetters)), void 0);
602
603
  let matchResult;
603
604
  if (p_1.Name == null) {
604
605
  if (p_1.ProtocolType == null) {
@@ -661,11 +662,11 @@ function ProcessParsing_groupProcesses(ps) {
661
662
  function ProcessParsing_mergeIdenticalProcesses(processes) {
662
663
  const l = List_groupBy((x) => {
663
664
  if (x.Name != null && Process_decomposeName_Z721C83C5(value(x.Name))[1] != null) {
664
- return [Process_decomposeName_Z721C83C5(value(x.Name))[0], boxHashOption(x.ExecutesProtocol), map$1(boxHashSeq, x.ParameterValues), map$1(boxHashSeq, x.Comments)];
665
+ return [Process_decomposeName_Z721C83C5(value(x.Name))[0], boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
665
666
  } else if (x.ExecutesProtocol != null && value(x.ExecutesProtocol).Name != null) {
666
- return [value(value(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), map$1(boxHashSeq, x.ParameterValues), map$1(boxHashSeq, x.Comments)];
667
+ return [value(value(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
667
668
  } else {
668
- return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), map$1(boxHashSeq, x.ParameterValues), map$1(boxHashSeq, x.Comments)];
669
+ return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
669
670
  }
670
671
  }, processes, {
671
672
  Equals: equalArrays,
@@ -682,20 +683,20 @@ function ProcessParsing_mergeIdenticalProcesses(processes) {
682
683
  }
683
684
  function ProcessParsing_processToRows(p) {
684
685
  let list_4;
685
- const pvs = map((ppv) => [JsonTypes_decomposeParameterValue(ppv), tryGetParameterColumnIndex(ppv)], defaultArg(p.ParameterValues, empty()));
686
+ const pvs = map$2((ppv) => [JsonTypes_decomposeParameterValue(ppv), tryGetParameterColumnIndex(ppv)], defaultArg(p.ParameterValues, empty()));
686
687
  let components;
687
688
  const matchValue = p.ExecutesProtocol;
688
- components = matchValue == null ? empty() : map((ppv_1) => [JsonTypes_decomposeComponent(ppv_1), tryGetComponentIndex(ppv_1)], defaultArg(value(matchValue).Components, empty()));
689
+ components = matchValue == null ? empty() : map$2((ppv_1) => [JsonTypes_decomposeComponent(ppv_1), tryGetComponentIndex(ppv_1)], defaultArg(value(matchValue).Components, empty()));
689
690
  let protVals;
690
691
  const matchValue_1 = p.ExecutesProtocol;
691
692
  if (matchValue_1 == null) {
692
693
  protVals = empty();
693
694
  } else {
694
695
  const prot_1 = value(matchValue_1);
695
- protVals = toList(delay(() => append$1(prot_1.Name != null ? singleton$1([CompositeHeader_ProtocolREF(), CompositeCell_FreeText(value(prot_1.Name))]) : empty$1(), delay(() => append$1(prot_1.ProtocolType != null ? singleton$1([CompositeHeader_ProtocolType(), CompositeCell_Term(value(prot_1.ProtocolType))]) : empty$1(), delay(() => append$1(prot_1.Description != null ? singleton$1([CompositeHeader_ProtocolDescription(), CompositeCell_FreeText(value(prot_1.Description))]) : empty$1(), delay(() => append$1(prot_1.Uri != null ? singleton$1([CompositeHeader_ProtocolUri(), CompositeCell_FreeText(value(prot_1.Uri))]) : empty$1(), delay(() => prot_1.Version != null ? singleton$1([CompositeHeader_ProtocolVersion(), CompositeCell_FreeText(value(prot_1.Version))]) : empty$1()))))))))));
696
+ protVals = toList(delay(() => append(prot_1.Name != null ? singleton$1([CompositeHeader_ProtocolREF(), CompositeCell_FreeText(value(prot_1.Name))]) : empty$1(), delay(() => append(prot_1.ProtocolType != null ? singleton$1([CompositeHeader_ProtocolType(), CompositeCell_Term(value(prot_1.ProtocolType))]) : empty$1(), delay(() => append(prot_1.Description != null ? singleton$1([CompositeHeader_ProtocolDescription(), CompositeCell_FreeText(value(prot_1.Description))]) : empty$1(), delay(() => append(prot_1.Uri != null ? singleton$1([CompositeHeader_ProtocolUri(), CompositeCell_FreeText(value(prot_1.Uri))]) : empty$1(), delay(() => prot_1.Version != null ? singleton$1([CompositeHeader_ProtocolVersion(), CompositeCell_FreeText(value(prot_1.Version))]) : empty$1()))))))))));
696
697
  }
697
- const comments = map((c) => [CompositeHeader_Comment(defaultArg(c.Name, "")), CompositeCell_FreeText(defaultArg(c.Value, ""))], defaultArg(p.Comments, empty()));
698
- return map((tupledArg_1) => {
698
+ const comments = map$2((c) => [CompositeHeader_Comment(defaultArg(c.Name, "")), CompositeCell_FreeText(defaultArg(c.Value, ""))], defaultArg(p.Comments, empty()));
699
+ return map$2((tupledArg_1) => {
699
700
  const ios = tupledArg_1[1];
700
701
  const inputForCharas = defaultArg(tryPick$1((tupledArg_2) => {
701
702
  const i_2 = tupledArg_2[0];
@@ -713,7 +714,7 @@ function ProcessParsing_processToRows(p) {
713
714
  return void 0;
714
715
  }
715
716
  }, ios), head(ios)[0]);
716
- const chars = map((cv) => [JsonTypes_decomposeCharacteristicValue(cv), tryGetCharacteristicColumnIndex(cv)], ProcessInput_getCharacteristicValues_5B3D5BA9(inputForCharas));
717
+ const chars = map$2((cv) => [JsonTypes_decomposeCharacteristicValue(cv), tryGetCharacteristicColumnIndex(cv)], ProcessInput_getCharacteristicValues_5B3D5BA9(inputForCharas));
717
718
  const outputForFactors = defaultArg(tryPick$1((tupledArg_4) => {
718
719
  const o_4 = tupledArg_4[1];
719
720
  if (ProcessOutput__isSample(o_4)) {
@@ -730,15 +731,52 @@ function ProcessParsing_processToRows(p) {
730
731
  return void 0;
731
732
  }
732
733
  }, ios), head(ios)[1]);
733
- const vals = map((tuple_5) => tuple_5[0], sortBy((arg) => defaultArg(arg[1], 1e4), append(chars, append(components, append(pvs, map((fv) => [JsonTypes_decomposeFactorValue(fv), tryGetFactorColumnIndex(fv)], ProcessOutput_getFactorValues_Z42C11600(outputForFactors))))), {
734
+ const vals = map$2((tuple_5) => tuple_5[0], sortBy((arg) => defaultArg(arg[1], 1e4), append$1(chars, append$1(components, append$1(pvs, map$2((fv) => [JsonTypes_decomposeFactorValue(fv), tryGetFactorColumnIndex(fv)], ProcessOutput_getFactorValues_Z42C11600(outputForFactors))))), {
734
735
  Compare: comparePrimitives
735
736
  }));
736
- return toList(delay(() => append$1(singleton$1(JsonTypes_decomposeProcessInput(inputForType)), delay(() => append$1(protVals, delay(() => append$1(vals, delay(() => append$1(comments, delay(() => singleton$1(JsonTypes_decomposeProcessOutput(outputForType))))))))))));
737
+ return toList(delay(() => append(singleton$1(JsonTypes_decomposeProcessInput(inputForType)), delay(() => append(protVals, delay(() => append(vals, delay(() => append(comments, delay(() => singleton$1(JsonTypes_decomposeProcessOutput(outputForType))))))))))));
737
738
  }, List_groupBy((tupledArg) => [ProcessInput__get_Name(tupledArg[0]), ProcessOutput__get_Name(tupledArg[1])], (list_4 = defaultArg(p.Outputs, empty()), zip(defaultArg(p.Inputs, empty()), list_4)), {
738
739
  Equals: equalArrays,
739
740
  GetHashCode: arrayHash
740
741
  }));
741
742
  }
743
+ function ARCtrl_CompositeHeader__CompositeHeader_TryParameter(this$) {
744
+ if (this$.tag === /* Parameter */
745
+ 3) {
746
+ const oa = this$.fields[0];
747
+ return ProtocolParameter.create(void 0, oa);
748
+ } else {
749
+ return void 0;
750
+ }
751
+ }
752
+ function ARCtrl_CompositeHeader__CompositeHeader_TryFactor(this$) {
753
+ if (this$.tag === /* Factor */
754
+ 2) {
755
+ const oa = this$.fields[0];
756
+ return Factor.create(void 0, oa);
757
+ } else {
758
+ return void 0;
759
+ }
760
+ }
761
+ function ARCtrl_CompositeHeader__CompositeHeader_TryCharacteristic(this$) {
762
+ if (this$.tag === /* Characteristic */
763
+ 1) {
764
+ return MaterialAttribute_create_A220A8A(void 0, this$.fields[0]);
765
+ } else {
766
+ return void 0;
767
+ }
768
+ }
769
+ function ARCtrl_CompositeHeader__CompositeHeader_TryComponent(this$) {
770
+ if (this$.tag === /* Component */
771
+ 0) {
772
+ return Component_create_Z2F0B38C7(void 0, void 0, this$.fields[0]);
773
+ } else {
774
+ return void 0;
775
+ }
776
+ }
777
+ function ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z6986DF18(value, unit) {
778
+ return JsonTypes_cellOfValue(value, unit);
779
+ }
742
780
  function CompositeRow_toProtocol(tableName, row) {
743
781
  return fold((p, hc) => {
744
782
  let matchResult, oa, v, v_1, v_2, v_3, oa_1, oa_2, unit, v_4, oa_3, t;
@@ -852,6 +890,44 @@ function CompositeRow_toProtocol(tableName, row) {
852
890
  }
853
891
  }, Protocol_create_Z414665E7(void 0, tableName), row);
854
892
  }
893
+ function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962(p) {
894
+ const t = ArcTable.init(defaultArg(p.Name, createMissingIdentifier()));
895
+ const enumerator = getEnumerator(defaultArg(p.Parameters, empty()));
896
+ try {
897
+ while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
898
+ const pp = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
899
+ t.AddColumn(CompositeHeader_Parameter(value(pp.ParameterName)), void 0, unwrap(ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(pp)));
900
+ }
901
+ } finally {
902
+ disposeSafe(enumerator);
903
+ }
904
+ const enumerator_1 = getEnumerator(defaultArg(p.Components, empty()));
905
+ try {
906
+ while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
907
+ const c = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
908
+ const v_1 = map((arg) => ResizeArray_singleton(ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z6986DF18(arg, unwrap(c.ComponentUnit))), c.ComponentValue);
909
+ t.AddColumn(CompositeHeader_Parameter(value(c.ComponentType)), unwrap(v_1), unwrap(ARCtrl_Process_Component__Component_TryGetColumnIndex(c)));
910
+ }
911
+ } finally {
912
+ disposeSafe(enumerator_1);
913
+ }
914
+ map((d) => {
915
+ t.AddProtocolDescriptionColumn(ResizeArray_singleton(d));
916
+ }, p.Description);
917
+ map((d_1) => {
918
+ t.AddProtocolVersionColumn(ResizeArray_singleton(d_1));
919
+ }, p.Version);
920
+ map((d_2) => {
921
+ t.AddProtocolTypeColumn(ResizeArray_singleton(d_2));
922
+ }, p.ProtocolType);
923
+ map((d_3) => {
924
+ t.AddProtocolUriColumn(ResizeArray_singleton(d_3));
925
+ }, p.Uri);
926
+ map((d_4) => {
927
+ t.AddProtocolNameColumn(ResizeArray_singleton(d_4));
928
+ }, p.Name);
929
+ return t;
930
+ }
855
931
  function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
856
932
  let source;
857
933
  if (this$.RowCount === 0) {
@@ -906,18 +982,22 @@ function ARCtrl_ArcTable__ArcTable_GetProcesses(this$) {
906
982
  const clo_1 = clo(arg);
907
983
  return clo_1;
908
984
  };
909
- return ProcessParsing_mergeIdenticalProcesses(toList(delay(() => map$2((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1)))));
985
+ return ProcessParsing_mergeIdenticalProcesses(toList(delay(() => map$1((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1)))));
910
986
  }
911
987
  }
988
+ function ARCtrl_ArcTable__ArcTable_fromProcesses_Static(name, ps) {
989
+ const tupledArg = Unchecked_alignByHeaders(true, collect(ProcessParsing_processToRows, ps));
990
+ return ArcTable.fromArcTableValues(name, tupledArg[0], tupledArg[1]);
991
+ }
912
992
  function ARCtrl_ArcTables__ArcTables_GetProcesses(this$) {
913
993
  return collect(ARCtrl_ArcTable__ArcTable_GetProcesses, toList(this$.Tables));
914
994
  }
915
995
  function ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(ps) {
916
996
  let collection;
917
- return new ArcTables((collection = map((tupledArg) => {
997
+ return new ArcTables((collection = map$2((tupledArg) => {
918
998
  const tupledArg_1 = Unchecked_alignByHeaders(true, collect(ProcessParsing_processToRows, tupledArg[1]));
919
999
  return ArcTable.fromArcTableValues(tupledArg[0], tupledArg_1[0], tupledArg_1[1]);
920
1000
  }, ProcessParsing_groupProcesses(ps)), Array.from(collection)));
921
1001
  }
922
1002
 
923
- export { ARCtrl_ArcTable__ArcTable_GetProcesses, ARCtrl_ArcTable__ArcTable_GetProtocols, ARCtrl_ArcTables__ArcTables_GetProcesses, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D, CompositeRow_toProtocol, JsonTypes_cellOfValue, JsonTypes_composeCharacteristicValue, JsonTypes_composeComponent, JsonTypes_composeFactorValue, JsonTypes_composeFreetextMaterialName, JsonTypes_composeParameterValue, JsonTypes_composeProcessInput, JsonTypes_composeProcessOutput, JsonTypes_composeTechnologyPlatform, JsonTypes_decomposeCharacteristicValue, JsonTypes_decomposeComponent, JsonTypes_decomposeFactorValue, JsonTypes_decomposeParameterValue, JsonTypes_decomposeProcessInput, JsonTypes_decomposeProcessOutput, JsonTypes_decomposeTechnologyPlatform, JsonTypes_valueOfCell, Person_AssayIdentifierPrefix, Person_createAssayIdentifierKey, Person_getSourceAssayIdentifiersFromComments, Person_orcidKey, Person_removeSourceAssayComments, Person_setCommentFromORCID, Person_setOrcidFromComments, Person_setSourceAssayComment, ProcessParsing_getProcessGetter, ProcessParsing_groupProcesses, ProcessParsing_mergeIdenticalProcesses, ProcessParsing_processToRows, ProcessParsing_tryCharacteristicGetter, ProcessParsing_tryComponentGetter, ProcessParsing_tryFactorGetter, ProcessParsing_tryGetCommentGetter, ProcessParsing_tryGetInputGetter, ProcessParsing_tryGetOutputGetter, ProcessParsing_tryGetProtocolDescriptionGetter, ProcessParsing_tryGetProtocolREFGetter, ProcessParsing_tryGetProtocolTypeGetter, ProcessParsing_tryGetProtocolURIGetter, ProcessParsing_tryGetProtocolVersionGetter, ProcessParsing_tryParameterGetter };
1003
+ export { ARCtrl_ArcTable__ArcTable_GetProcesses, ARCtrl_ArcTable__ArcTable_GetProtocols, ARCtrl_ArcTable__ArcTable_fromProcesses_Static, ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962, ARCtrl_ArcTables__ArcTables_GetProcesses, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D, ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z6986DF18, ARCtrl_CompositeHeader__CompositeHeader_TryCharacteristic, ARCtrl_CompositeHeader__CompositeHeader_TryComponent, ARCtrl_CompositeHeader__CompositeHeader_TryFactor, ARCtrl_CompositeHeader__CompositeHeader_TryParameter, CompositeRow_toProtocol, JsonTypes_cellOfValue, JsonTypes_composeCharacteristicValue, JsonTypes_composeComponent, JsonTypes_composeFactorValue, JsonTypes_composeFreetextMaterialName, JsonTypes_composeParameterValue, JsonTypes_composeProcessInput, JsonTypes_composeProcessOutput, JsonTypes_composeTechnologyPlatform, JsonTypes_decomposeCharacteristicValue, JsonTypes_decomposeComponent, JsonTypes_decomposeFactorValue, JsonTypes_decomposeParameterValue, JsonTypes_decomposeProcessInput, JsonTypes_decomposeProcessOutput, JsonTypes_decomposeTechnologyPlatform, JsonTypes_valueOfCell, Person_AssayIdentifierPrefix, Person_createAssayIdentifierKey, Person_getSourceAssayIdentifiersFromComments, Person_orcidKey, Person_removeSourceAssayComments, Person_setCommentFromORCID, Person_setOrcidFromComments, Person_setSourceAssayComment, ProcessParsing_getProcessGetter, ProcessParsing_groupProcesses, ProcessParsing_mergeIdenticalProcesses, ProcessParsing_processToRows, ProcessParsing_tryCharacteristicGetter, ProcessParsing_tryComponentGetter, ProcessParsing_tryFactorGetter, ProcessParsing_tryGetCommentGetter, ProcessParsing_tryGetInputGetter, ProcessParsing_tryGetOutputGetter, ProcessParsing_tryGetProtocolDescriptionGetter, ProcessParsing_tryGetProtocolREFGetter, ProcessParsing_tryGetProtocolTypeGetter, ProcessParsing_tryGetProtocolURIGetter, ProcessParsing_tryGetProtocolVersionGetter, ProcessParsing_tryParameterGetter };
@@ -1,10 +1,11 @@
1
- import { trimStart, substring, toText, printf, trim } from '../../node_modules/@fable-org/fable-library-js/String.js';
1
+ import { toText, printf, trim, trimStart, substring } from '../../node_modules/@fable-org/fable-library-js/String.js';
2
2
  import { item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
3
3
  import { value, defaultArg, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
4
4
  import { DataFile__get_AsString } from './DataFile.js';
5
5
  import { ResizeArray_map } from './Helper/Collections.js';
6
6
  import { boxHashArray, boxHashOption, boxHashSeq, hash } from './Helper/HashCodes.js';
7
7
  import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
8
+ import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
8
9
 
9
10
  function DataAux_nameFromPathAndSelector(path, selector) {
10
11
  return toText(printf("%s#%s"))(path)(selector);
@@ -175,5 +176,11 @@ class Data {
175
176
  }
176
177
  }
177
178
  }
179
+ function Data_$reflection() {
180
+ return class_type("ARCtrl.Data", void 0, Data);
181
+ }
182
+ function Data_$ctor_5909441C(id, name, dataType, format, selectorFormat, comments) {
183
+ return new Data(id, name, dataType, format, selectorFormat, comments);
184
+ }
178
185
 
179
- export { Data, DataAux_nameFromPathAndSelector, DataAux_pathAndSelectorFromName };
186
+ export { Data, DataAux_nameFromPathAndSelector, DataAux_pathAndSelectorFromName, Data_$ctor_5909441C, Data_$reflection };
@@ -1,8 +1,9 @@
1
1
  import { boxHashArray, boxHashOption, boxHashSeq, hash } from './Helper/HashCodes.js';
2
- import { unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
- import './Helper/Url.js';
2
+ import { OntologyAnnotation } from './OntologyAnnotation.js';
3
+ import { unwrap, map, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
4
4
  import { Value_Ontology } from './Value.js';
5
- import { Data } from './Data.js';
5
+ import { Data, Data_$reflection } from './Data.js';
6
+ import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
6
7
 
7
8
  class DataContext extends Data {
8
9
  constructor(id, name, dataType, format, selectorFormat, explication, unit, objectType, label, description, generatedBy, comments) {
@@ -50,6 +51,9 @@ class DataContext extends Data {
50
51
  return DataContext__get_Description(this$);
51
52
  }
52
53
  }
54
+ function DataContext_$reflection() {
55
+ return class_type("ARCtrl.DataContext", void 0, DataContext, Data_$reflection());
56
+ }
53
57
  function DataContext_$ctor_Z780A8A2A(id, name, dataType, format, selectorFormat, explication, unit, objectType, label, description, generatedBy, comments) {
54
58
  return new DataContext(id, name, dataType, format, selectorFormat, explication, unit, objectType, label, description, generatedBy, comments);
55
59
  }
@@ -89,6 +93,17 @@ function DataContext__get_GeneratedBy(this$) {
89
93
  function DataContext__set_GeneratedBy_6DFDD678(this$, generatedBy) {
90
94
  this$._generatedBy = generatedBy;
91
95
  }
96
+ function DataContext__AsData(this$) {
97
+ return new Data(unwrap(this$.ID), unwrap(this$.Name), unwrap(this$.DataType), unwrap(this$.Format), unwrap(this$.SelectorFormat), this$.Comments);
98
+ }
99
+ function DataContext_fromData_Z7B4D7BF5(data, explication, unit, objectType, label, description, generatedBy) {
100
+ return DataContext_$ctor_Z780A8A2A(unwrap(data.ID), unwrap(data.Name), unwrap(data.DataType), unwrap(data.Format), unwrap(data.SelectorFormat), unwrap(explication), unwrap(unit), unwrap(objectType), unwrap(label), unwrap(description), unwrap(generatedBy), data.Comments);
101
+ }
102
+ function DataContext_createAsPV(alternateName, measurementMethod, description, category, value$1, unit) {
103
+ let oa, v;
104
+ return DataContext_$ctor_Z780A8A2A(void 0, void 0, void 0, void 0, void 0, unwrap(category), unwrap(unit), unwrap(value$1 == null ? void 0 : value(value$1).tag === /* Ontology */
105
+ 0 ? (oa = value(value$1).fields[0], oa) : (v = value(value$1), new OntologyAnnotation(v.Text))), unwrap(alternateName), unwrap(description), unwrap(measurementMethod));
106
+ }
92
107
  function DataContext__Copy(this$) {
93
108
  const copy = DataContext_$ctor_Z780A8A2A();
94
109
  copy.ID = this$.ID;
@@ -105,4 +120,4 @@ function DataContext__Copy(this$) {
105
120
  return copy;
106
121
  }
107
122
 
108
- export { DataContext, DataContext_$ctor_Z780A8A2A, DataContext__Copy, DataContext__get_Description, DataContext__get_Explication, DataContext__get_GeneratedBy, DataContext__get_Label, DataContext__get_ObjectType, DataContext__get_Unit, DataContext__set_Description_6DFDD678, DataContext__set_Explication_279AAFF2, DataContext__set_GeneratedBy_6DFDD678, DataContext__set_Label_6DFDD678, DataContext__set_ObjectType_279AAFF2, DataContext__set_Unit_279AAFF2 };
123
+ export { DataContext, DataContext_$ctor_Z780A8A2A, DataContext_$reflection, DataContext__AsData, DataContext__Copy, DataContext__get_Description, DataContext__get_Explication, DataContext__get_GeneratedBy, DataContext__get_Label, DataContext__get_ObjectType, DataContext__get_Unit, DataContext__set_Description_6DFDD678, DataContext__set_Explication_279AAFF2, DataContext__set_GeneratedBy_6DFDD678, DataContext__set_Label_6DFDD678, DataContext__set_ObjectType_279AAFF2, DataContext__set_Unit_279AAFF2, DataContext_createAsPV, DataContext_fromData_Z7B4D7BF5 };
@@ -1,4 +1,5 @@
1
1
  import { Union } from '../../node_modules/@fable-org/fable-library-js/Types.js';
2
+ import { union_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
2
3
 
3
4
  function DataFile_RawDataFile() {
4
5
  return new DataFile(0, []);
@@ -19,6 +20,18 @@ class DataFile extends Union {
19
20
  return ["RawDataFile", "DerivedDataFile", "ImageFile"];
20
21
  }
21
22
  }
23
+ function DataFile_$reflection() {
24
+ return union_type("ARCtrl.DataFile", [], DataFile, () => [[], [], []]);
25
+ }
26
+ function DataFile_get_RawDataFileJson() {
27
+ return "Raw Data File";
28
+ }
29
+ function DataFile_get_DerivedDataFileJson() {
30
+ return "Derived Data File";
31
+ }
32
+ function DataFile_get_ImageFileJson() {
33
+ return "Image File";
34
+ }
22
35
  function DataFile__get_AsString(this$) {
23
36
  switch (this$.tag) {
24
37
  case /* DerivedDataFile */
@@ -46,5 +59,29 @@ function DataFile_fromString_Z721C83C5(dt) {
46
59
  throw new Error(`Invalid DataFile type: ${dt}`);
47
60
  }
48
61
  }
62
+ function DataFile__get_IsDerivedData(this$) {
63
+ if (this$.tag === /* DerivedDataFile */
64
+ 1) {
65
+ return true;
66
+ } else {
67
+ return false;
68
+ }
69
+ }
70
+ function DataFile__get_IsRawData(this$) {
71
+ if (this$.tag === /* RawDataFile */
72
+ 0) {
73
+ return true;
74
+ } else {
75
+ return false;
76
+ }
77
+ }
78
+ function DataFile__get_IsImage(this$) {
79
+ if (this$.tag === /* ImageFile */
80
+ 2) {
81
+ return true;
82
+ } else {
83
+ return false;
84
+ }
85
+ }
49
86
 
50
- export { DataFile, DataFile_DerivedDataFile, DataFile_ImageFile, DataFile_RawDataFile, DataFile__get_AsString, DataFile_fromString_Z721C83C5 };
87
+ export { DataFile, DataFile_$reflection, DataFile_DerivedDataFile, DataFile_ImageFile, DataFile_RawDataFile, DataFile__get_AsString, DataFile__get_IsDerivedData, DataFile__get_IsImage, DataFile__get_IsRawData, DataFile_fromString_Z721C83C5, DataFile_get_DerivedDataFileJson, DataFile_get_ImageFileJson, DataFile_get_RawDataFileJson };
@@ -1,9 +1,12 @@
1
1
  import { CompositeHeader_Input, IOType_Data, CompositeHeader_Parameter, CompositeHeader_FreeText } from './Table/CompositeHeader.js';
2
2
  import { OntologyAnnotation } from './OntologyAnnotation.js';
3
3
  import { ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
4
- import { map } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
4
+ import { map, iterateIndexed } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
5
+ import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
6
+ import { CompositeCell, CompositeCell_Term, CompositeCell_FreeText } from './Table/CompositeCell.js';
7
+ import { DataContext__get_Explication, DataContext__set_Explication_279AAFF2, DataContext__get_Unit, DataContext__set_Unit_279AAFF2, DataContext__get_ObjectType, DataContext__set_ObjectType_279AAFF2, DataContext__get_Description, DataContext__set_Description_6DFDD678, DataContext__Copy } from './DataContext.js';
5
8
  import { hash, boxHashSeq } from './Helper/HashCodes.js';
6
- import { DataContext__Copy } from './DataContext.js';
9
+ import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
7
10
 
8
11
  const DataMapAux_dataHeader = CompositeHeader_Input(IOType_Data());
9
12
  const DataMapAux_explication = new OntologyAnnotation("Clarification", "NCIT", "http://purl.obolibrary.org/obo/NCIT_C94778");
@@ -12,10 +15,63 @@ const DataMapAux_unit = new OntologyAnnotation("Unit", "UO", "http://purl.obolib
12
15
  const DataMapAux_unitHeader = CompositeHeader_Parameter(DataMapAux_unit);
13
16
  const DataMapAux_objectType = new OntologyAnnotation("Data Type", "NCIT", "http://purl.obolibrary.org/obo/NCIT_C42645");
14
17
  const DataMapAux_objectTypeHeader = CompositeHeader_Parameter(DataMapAux_objectType);
15
- CompositeHeader_FreeText("Label");
18
+ const DataMapAux_labelHeader = CompositeHeader_FreeText("Label");
16
19
  const DataMapAux_descriptionHeader = CompositeHeader_FreeText("Description");
17
20
  const DataMapAux_generatedByHeader = CompositeHeader_FreeText("Generated By");
18
- ofArray([DataMapAux_dataHeader, DataMapAux_explicationHeader, DataMapAux_unitHeader, DataMapAux_objectTypeHeader, DataMapAux_descriptionHeader, DataMapAux_generatedByHeader]);
21
+ const DataMapAux_allowedHeaders = ofArray([DataMapAux_dataHeader, DataMapAux_explicationHeader, DataMapAux_unitHeader, DataMapAux_objectTypeHeader, DataMapAux_descriptionHeader, DataMapAux_generatedByHeader]);
22
+ function DataMapAux_getOntologyColumn(f, dataContexts) {
23
+ const collection = map((dc) => {
24
+ const matchValue = f(dc);
25
+ if (matchValue == null) {
26
+ return CompositeCell.emptyTerm;
27
+ } else {
28
+ return CompositeCell_Term(value(matchValue));
29
+ }
30
+ }, dataContexts);
31
+ return Array.from(collection);
32
+ }
33
+ function DataMapAux_getStringColumn(f, dataContexts) {
34
+ const collection = map((dc) => {
35
+ const matchValue = f(dc);
36
+ if (matchValue == null) {
37
+ return CompositeCell.emptyFreeText;
38
+ } else {
39
+ return CompositeCell_FreeText(value(matchValue));
40
+ }
41
+ }, dataContexts);
42
+ return Array.from(collection);
43
+ }
44
+ function DataMapAux_setOntologyColumn(f, column, dataContexts) {
45
+ iterateIndexed((i, cell) => {
46
+ if (cell.tag === /* Term */
47
+ 0) {
48
+ const s = cell.fields[0];
49
+ f(dataContexts[i], s);
50
+ }
51
+ }, column);
52
+ }
53
+ function DataMapAux_setStringColumn(f, column, dataContexts) {
54
+ iterateIndexed((i, cell) => {
55
+ if (cell.tag === /* FreeText */
56
+ 1) {
57
+ const s = cell.fields[0];
58
+ f(dataContexts[i], s);
59
+ }
60
+ }, column);
61
+ }
62
+ function DataMapAux_SanityChecks_rowIndexInBoundaries(row, dataContexts) {
63
+ if (row < 0) {
64
+ throw new Error("Row index must be greater or equal to 0.");
65
+ }
66
+ if (row >= dataContexts.length) {
67
+ throw new Error("Row index must be less than the number of rows.");
68
+ }
69
+ }
70
+ function DataMapAux_SanityChecks_lengthOfNewColumn(newColumn, dataContexts) {
71
+ if (newColumn.length !== dataContexts.length) {
72
+ throw new Error("Length of new column does not match length of data contexts.");
73
+ }
74
+ }
19
75
  class DataMap {
20
76
  constructor(dataContexts) {
21
77
  this.staticHash = 0;
@@ -30,6 +86,9 @@ class DataMap {
30
86
  return boxHashSeq(this$["dataContexts@108"]) | 0;
31
87
  }
32
88
  }
89
+ function DataMap_$reflection() {
90
+ return class_type("ARCtrl.DataMap", void 0, DataMap);
91
+ }
33
92
  function DataMap_$ctor_4E3220A7(dataContexts) {
34
93
  return new DataMap(dataContexts);
35
94
  }
@@ -45,9 +104,56 @@ function DataMap__get_DataContexts(this$) {
45
104
  function DataMap_init() {
46
105
  return DataMap_$ctor_4E3220A7([]);
47
106
  }
107
+ function DataMap__GetExplicationColumn(this$) {
108
+ return DataMapAux_getOntologyColumn(DataContext__get_Explication, this$["dataContexts@108"]);
109
+ }
110
+ function DataMap__SetExplicationColumn_C98E589(this$, cells) {
111
+ DataMapAux_setOntologyColumn((dc, oa) => {
112
+ DataContext__set_Explication_279AAFF2(dc, oa);
113
+ }, cells, this$["dataContexts@108"]);
114
+ }
115
+ function DataMap__GetUnitColumn(this$) {
116
+ return DataMapAux_getOntologyColumn(DataContext__get_Unit, this$["dataContexts@108"]);
117
+ }
118
+ function DataMap__SetUnitColumn_C98E589(this$, cells) {
119
+ DataMapAux_setOntologyColumn((dc, oa) => {
120
+ DataContext__set_Unit_279AAFF2(dc, oa);
121
+ }, cells, this$["dataContexts@108"]);
122
+ }
123
+ function DataMap__GetObjectTypeColumn(this$) {
124
+ return DataMapAux_getOntologyColumn(DataContext__get_ObjectType, this$["dataContexts@108"]);
125
+ }
126
+ function DataMap__SetDataTypeColumn_C98E589(this$, cells) {
127
+ DataMapAux_setOntologyColumn((dc, oa) => {
128
+ DataContext__set_ObjectType_279AAFF2(dc, oa);
129
+ }, cells, this$["dataContexts@108"]);
130
+ }
131
+ function DataMap__GetLabelColumn(this$) {
132
+ return DataMapAux_getStringColumn((dc) => dc.Name, this$["dataContexts@108"]);
133
+ }
134
+ function DataMap__SetLabelColumn_C98E589(this$, cells) {
135
+ DataMapAux_setStringColumn((dc, s) => {
136
+ dc.Name = s;
137
+ }, cells, this$["dataContexts@108"]);
138
+ }
139
+ function DataMap__GetDescriptionColumn(this$) {
140
+ return DataMapAux_getStringColumn(DataContext__get_Description, this$["dataContexts@108"]);
141
+ }
142
+ function DataMap__SetDescriptionColumn_C98E589(this$, cells) {
143
+ DataMapAux_setStringColumn((dc, s) => {
144
+ DataContext__set_Description_6DFDD678(dc, s);
145
+ }, cells, this$["dataContexts@108"]);
146
+ }
147
+ function DataMap__GetDataContext_Z58338566(this$, row, SkipValidation) {
148
+ DataMapAux_SanityChecks_rowIndexInBoundaries(row, this$["dataContexts@108"]);
149
+ return this$["dataContexts@108"][row];
150
+ }
151
+ function DataMap_getDataContext_Z58338566(row, SkipValidation) {
152
+ return (dm) => DataMap__GetDataContext_Z58338566(dm, row, SkipValidation);
153
+ }
48
154
  function DataMap__Copy(this$) {
49
155
  let collection;
50
156
  return DataMap_$ctor_4E3220A7((collection = map(DataContext__Copy, this$["dataContexts@108"]), Array.from(collection)));
51
157
  }
52
158
 
53
- export { DataMap, DataMapAux_dataHeader, DataMapAux_descriptionHeader, DataMapAux_explication, DataMapAux_explicationHeader, DataMapAux_generatedByHeader, DataMapAux_objectType, DataMapAux_objectTypeHeader, DataMapAux_unit, DataMapAux_unitHeader, DataMap_$ctor_4E3220A7, DataMap__Copy, DataMap__get_DataContexts, DataMap__get_StaticHash, DataMap__set_StaticHash_Z524259A4, DataMap_init };
159
+ export { DataMap, DataMapAux_SanityChecks_lengthOfNewColumn, DataMapAux_SanityChecks_rowIndexInBoundaries, DataMapAux_allowedHeaders, DataMapAux_dataHeader, DataMapAux_descriptionHeader, DataMapAux_explication, DataMapAux_explicationHeader, DataMapAux_generatedByHeader, DataMapAux_getOntologyColumn, DataMapAux_getStringColumn, DataMapAux_labelHeader, DataMapAux_objectType, DataMapAux_objectTypeHeader, DataMapAux_setOntologyColumn, DataMapAux_setStringColumn, DataMapAux_unit, DataMapAux_unitHeader, DataMap_$ctor_4E3220A7, DataMap_$reflection, DataMap__Copy, DataMap__GetDataContext_Z58338566, DataMap__GetDescriptionColumn, DataMap__GetExplicationColumn, DataMap__GetLabelColumn, DataMap__GetObjectTypeColumn, DataMap__GetUnitColumn, DataMap__SetDataTypeColumn_C98E589, DataMap__SetDescriptionColumn_C98E589, DataMap__SetExplicationColumn_C98E589, DataMap__SetLabelColumn_C98E589, DataMap__SetUnitColumn_C98E589, DataMap__get_DataContexts, DataMap__get_StaticHash, DataMap__set_StaticHash_Z524259A4, DataMap_getDataContext_Z58338566, DataMap_init };