@nfdi4plants/arctrl 2.5.1 → 3.0.0-alpha.2

package/dist/ts/esm/ts/Core/OntologyAnnotation.js

@@ -0,0 +1,209 @@
+import { value as value_4, defaultArg, unwrap } from "@fable-org/fable-library-js/Option.js";
+import { Pattern_TermAnnotationShortPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseTermAnnotation } from "./Helper/Regex.js";
+import { createOAUri } from "./Helper/Url.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "@fable-org/fable-library-js/System.Text.js";
+import { printf, toText, join } from "@fable-org/fable-library-js/String.js";
+import { toArray, empty, singleton, append, delay, toList } from "@fable-org/fable-library-js/Seq.js";
+import { toString } from "@fable-org/fable-library-js/Types.js";
+import { hash as hash_1, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
+import { ResizeArray_map } from "./Helper/Collections.js";
+import { safeHash } from "@fable-org/fable-library-js/Util.js";
+import { class_type } from "@fable-org/fable-library-js/Reflection.js";
+export class OntologyAnnotation {
+    constructor(name, tsr, tan, comments) {
+        this._name = ((name == null) ? undefined : ((value_4(name) === "") ? undefined : name));
+        this._termSourceREF = ((tsr == null) ? undefined : ((value_4(tsr) === "") ? undefined : tsr));
+        this._termAccessionNumber = ((tan == null) ? undefined : ((value_4(tan) === "") ? undefined : ((value_4(tan) === ":") ? undefined : tan)));
+        this._comments = defaultArg(comments, []);
+    }
+    get Name() {
+        const this$ = this;
+        return unwrap(this$._name);
+    }
+    set Name(name) {
+        const this$ = this;
+        this$._name = name;
+    }
+    get TermSourceREF() {
+        const this$ = this;
+        return unwrap(this$._termSourceREF);
+    }
+    set TermSourceREF(tsr) {
+        const this$ = this;
+        this$._termSourceREF = tsr;
+    }
+    get TermAccessionNumber() {
+        const this$ = this;
+        return unwrap(this$._termAccessionNumber);
+    }
+    set TermAccessionNumber(tan) {
+        const this$ = this;
+        this$._termAccessionNumber = tan;
+    }
+    get Comments() {
+        const this$ = this;
+        return this$._comments;
+    }
+    set Comments(comments) {
+        const this$ = this;
+        this$._comments = comments;
+    }
+    static make(name, tsr, tan, comments) {
+        return new OntologyAnnotation(unwrap(name), unwrap(tsr), unwrap(tan), comments);
+    }
+    static create(name, tsr, tan, comments) {
+        const comments_1 = defaultArg(comments, []);
+        return OntologyAnnotation.make(name, tsr, tan, comments_1);
+    }
+    get TANInfo() {
+        let matchValue, tan, matchValue_1, matchValue_2, tsr;
+        const this$ = this;
+        return unwrap((matchValue = this$.TermAccessionNumber, (matchValue == null) ? undefined : ((tan = value_4(matchValue), (matchValue_1 = tryParseTermAnnotation(tan), (matchValue_1 == null) ? ((matchValue_2 = this$.TermSourceREF, (matchValue_2 == null) ? undefined : ((value_4(matchValue_2) === "") ? undefined : ((tsr = value_4(matchValue_2), {
+            IDSpace: tsr,
+            LocalID: tan,
+        }))))) : value_4(matchValue_1))))));
+    }
+    get NameText() {
+        const this$ = this;
+        return defaultArg(this$.Name, "");
+    }
+    static createUriAnnotation(termSourceRef, localTAN) {
+        return createOAUri(termSourceRef, localTAN);
+    }
+    static fromTermAnnotation(tan, name) {
+        const matchValue = tryParseTermAnnotation(tan);
+        if (matchValue == null) {
+            return OntologyAnnotation.create(unwrap(name), undefined, tan);
+        }
+        else {
+            const r = value_4(matchValue);
+            const accession = (r.IDSpace + ":") + r.LocalID;
+            return OntologyAnnotation.create(unwrap(name), r.IDSpace, accession);
+        }
+    }
+    get TermAccessionShort() {
+        const this$ = this;
+        const matchValue = this$.TANInfo;
+        if (matchValue != null) {
+            const id = value_4(matchValue);
+            return `${id.IDSpace}:${id.LocalID}`;
+        }
+        else {
+            return "";
+        }
+    }
+    get TermAccessionOntobeeUrl() {
+        const this$ = this;
+        const matchValue = this$.TANInfo;
+        if (matchValue != null) {
+            const id = value_4(matchValue);
+            return OntologyAnnotation.createUriAnnotation(id.IDSpace, id.LocalID);
+        }
+        else {
+            return "";
+        }
+    }
+    get TermAccessionAndOntobeeUrlIfShort() {
+        const this$ = this;
+        const matchValue = this$.TermAccessionNumber;
+        if (matchValue != null) {
+            const tan = value_4(matchValue);
+            return (ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, tan) != null) ? this$.TermAccessionOntobeeUrl : tan;
+        }
+        else {
+            return "";
+        }
+    }
+    static toStringObject(oa, asOntobeePurlUrlIfShort) {
+        let url;
+        const asOntobeePurlUrlIfShort_1 = defaultArg(asOntobeePurlUrlIfShort, false);
+        const TermName = defaultArg(oa.Name, "");
+        const TermSourceREF = defaultArg(oa.TermSourceREF, "");
+        return {
+            TermAccessionNumber: asOntobeePurlUrlIfShort_1 ? ((url = oa.TermAccessionAndOntobeeUrlIfShort, (url === "") ? defaultArg(oa.TermAccessionNumber, "") : url)) : defaultArg(oa.TermAccessionNumber, ""),
+            TermName: TermName,
+            TermSourceREF: TermSourceREF,
+        };
+    }
+    toString() {
+        const this$ = this;
+        const sb = StringBuilder_$ctor();
+        StringBuilder__Append_Z721C83C5(sb, "{");
+        StringBuilder__Append_Z721C83C5(sb, join("; ", toList(delay(() => {
+            let arg;
+            return append((this$.Name != null) ? singleton((arg = value_4(this$.Name), toText(printf("Name = %A"))(arg))) : empty(), delay(() => {
+                let arg_1;
+                return append((this$.TermSourceREF != null) ? singleton((arg_1 = value_4(this$.TermSourceREF), toText(printf("TSR = %A"))(arg_1))) : empty(), delay(() => {
+                    let arg_2;
+                    return append((this$.TermAccessionNumber != null) ? singleton((arg_2 = value_4(this$.TermAccessionNumber), toText(printf("TAN = %A"))(arg_2))) : empty(), delay(() => {
+                        let arg_3;
+                        return (this$.Comments.length !== 0) ? singleton((arg_3 = this$.Comments, toText(printf("Comments = %A"))(arg_3))) : empty();
+                    }));
+                }));
+            }));
+        }))));
+        StringBuilder__Append_Z721C83C5(sb, "}");
+        return toString(sb);
+    }
+    isEmpty() {
+        const this$ = this;
+        return (((this$.Name == null) && (this$.TermSourceREF == null)) && (this$.TermAccessionNumber == null)) && (this$.Comments.length === 0);
+    }
+    GetHashCode() {
+        const this$ = this;
+        return boxHashArray(toArray(delay(() => append(singleton(boxHashOption(this$.Name)), delay(() => {
+            let tsr_1, taninfo_1, tsr;
+            const matchValue = this$.TermSourceREF;
+            const matchValue_1 = this$.TANInfo;
+            if (matchValue != null) {
+                return (matchValue_1 == null) ? ((tsr_1 = value_4(matchValue), singleton(boxHashArray([tsr_1, defaultArg(this$.TermAccessionNumber, "")])))) : ((taninfo_1 = value_4(matchValue_1), (tsr = value_4(matchValue), singleton(boxHashArray([tsr, (taninfo_1.IDSpace + ":") + taninfo_1.LocalID])))));
+            }
+            else if (matchValue_1 == null) {
+                const tan_1 = defaultArg(this$.TermAccessionNumber, "");
+                return singleton(boxHashArray([defaultArg(this$.TermAccessionNumber, ""), tan_1]));
+            }
+            else {
+                const taninfo = value_4(matchValue_1);
+                return singleton(boxHashArray([taninfo.IDSpace, (taninfo.IDSpace + ":") + taninfo.LocalID]));
+            }
+        }))))) | 0;
+    }
+    Equals(obj) {
+        const this$ = this;
+        return hash_1(this$) === hash_1(obj);
+    }
+    Copy() {
+        const this$ = this;
+        const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
+        const name = this$.Name;
+        const tsr = this$.TermSourceREF;
+        const tan = this$.TermAccessionNumber;
+        return OntologyAnnotation.make(name, tsr, tan, nextComments);
+    }
+    Print() {
+        const this$ = this;
+        return toString(this$);
+    }
+    PrintCompact() {
+        const this$ = this;
+        return "OA " + this$.NameText;
+    }
+    CompareTo(obj) {
+        const this$ = this;
+        if (obj instanceof OntologyAnnotation) {
+            const oa = obj;
+            const hash = safeHash(this$) | 0;
+            const otherHash = safeHash(oa) | 0;
+            return ((hash === otherHash) ? 0 : ((hash < otherHash) ? -1 : 1)) | 0;
+        }
+        else {
+            return 1;
+        }
+    }
+}
+export function OntologyAnnotation_$reflection() {
+    return class_type("ARCtrl.OntologyAnnotation", undefined, OntologyAnnotation);
+}
+export function OntologyAnnotation_$ctor_Z54349580(name, tsr, tan, comments) {
+    return new OntologyAnnotation(name, tsr, tan, comments);
+}

package/dist/ts/esm/ts/Core/OntologySourceReference.js

@@ -0,0 +1,88 @@
+import { defaultArg, unwrap } from "@fable-org/fable-library-js/Option.js";
+import { ResizeArray_map } from "./Helper/Collections.js";
+import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
+import { safeHash } from "@fable-org/fable-library-js/Util.js";
+import { class_type } from "@fable-org/fable-library-js/Reflection.js";
+export class OntologySourceReference {
+    constructor(description, file, name, version, comments) {
+        this._description = description;
+        this._file = file;
+        this._name = name;
+        this._version = version;
+        this._comments = defaultArg(comments, []);
+    }
+    get Description() {
+        const this$ = this;
+        return unwrap(this$._description);
+    }
+    set Description(description) {
+        const this$ = this;
+        this$._description = description;
+    }
+    get File() {
+        const this$ = this;
+        return unwrap(this$._file);
+    }
+    set File(file) {
+        const this$ = this;
+        this$._file = file;
+    }
+    get Name() {
+        const this$ = this;
+        return unwrap(this$._name);
+    }
+    set Name(name) {
+        const this$ = this;
+        this$._name = name;
+    }
+    get Version() {
+        const this$ = this;
+        return unwrap(this$._version);
+    }
+    set Version(version) {
+        const this$ = this;
+        this$._version = version;
+    }
+    get Comments() {
+        const this$ = this;
+        return this$._comments;
+    }
+    set Comments(comments) {
+        const this$ = this;
+        this$._comments = comments;
+    }
+    static make(description, file, name, version, comments) {
+        return new OntologySourceReference(unwrap(description), unwrap(file), unwrap(name), unwrap(version), comments);
+    }
+    static create(description, file, name, version, comments) {
+        const comments_1 = defaultArg(comments, []);
+        return OntologySourceReference.make(description, file, name, version, comments_1);
+    }
+    static get empty() {
+        return OntologySourceReference.create();
+    }
+    Copy() {
+        const this$ = this;
+        const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
+        const description = this$.Description;
+        const file = this$.File;
+        const name = this$.Name;
+        const version = this$.Version;
+        return OntologySourceReference.make(description, file, name, version, nextComments);
+    }
+    GetHashCode() {
+        const this$ = this;
+        return boxHashArray([boxHashOption(this$.Description), boxHashOption(this$.File), boxHashOption(this$.Name), boxHashOption(this$.Version), boxHashSeq(this$.Comments)]) | 0;
+    }
+    Equals(obj) {
+        let t;
+        const this$ = this;
+        return (obj instanceof OntologySourceReference) && ((t = obj, safeHash(this$) === safeHash(t)));
+    }
+}
+export function OntologySourceReference_$reflection() {
+    return class_type("ARCtrl.OntologySourceReference", undefined, OntologySourceReference);
+}
+export function OntologySourceReference_$ctor_7C9A7CF8(description, file, name, version, comments) {
+    return new OntologySourceReference(description, file, name, version, comments);
+}

package/dist/ts/esm/ts/Core/Person.js

@@ -0,0 +1,190 @@
+import { map as map_1, defaultArg, unwrap } from "@fable-org/fable-library-js/Option.js";
+import { tryFind } from "@fable-org/fable-library-js/Array.js";
+import { equals } from "@fable-org/fable-library-js/Util.js";
+import { ofArray, choose, map, singleton, append } from "@fable-org/fable-library-js/List.js";
+import { ResizeArray_map } from "./Helper/Collections.js";
+import { hash, boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "@fable-org/fable-library-js/System.Text.js";
+import { printf, toText, join } from "@fable-org/fable-library-js/String.js";
+import { length } from "@fable-org/fable-library-js/Seq.js";
+import { toString } from "@fable-org/fable-library-js/Types.js";
+import { class_type } from "@fable-org/fable-library-js/Reflection.js";
+export class Person {
+    constructor(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles, comments) {
+        this._orcid = orcid;
+        this._lastName = lastName;
+        this._firstName = firstName;
+        this._midInitials = midInitials;
+        this._email = email;
+        this._phone = phone;
+        this._fax = fax;
+        this._address = address;
+        this._affiliation = affiliation;
+        this._roles = defaultArg(roles, []);
+        this._comments = defaultArg(comments, []);
+    }
+    get ORCID() {
+        const this$ = this;
+        return unwrap(this$._orcid);
+    }
+    set ORCID(orcid) {
+        const this$ = this;
+        this$._orcid = orcid;
+    }
+    get FirstName() {
+        const this$ = this;
+        return unwrap(this$._firstName);
+    }
+    set FirstName(firstName) {
+        const this$ = this;
+        this$._firstName = firstName;
+    }
+    get LastName() {
+        const this$ = this;
+        return unwrap(this$._lastName);
+    }
+    set LastName(lastName) {
+        const this$ = this;
+        this$._lastName = lastName;
+    }
+    get MidInitials() {
+        const this$ = this;
+        return unwrap(this$._midInitials);
+    }
+    set MidInitials(midInitials) {
+        const this$ = this;
+        this$._midInitials = midInitials;
+    }
+    get Address() {
+        const this$ = this;
+        return unwrap(this$._address);
+    }
+    set Address(address) {
+        const this$ = this;
+        this$._address = address;
+    }
+    get Affiliation() {
+        const this$ = this;
+        return unwrap(this$._affiliation);
+    }
+    set Affiliation(affiliation) {
+        const this$ = this;
+        this$._affiliation = affiliation;
+    }
+    get EMail() {
+        const this$ = this;
+        return unwrap(this$._email);
+    }
+    set EMail(email) {
+        const this$ = this;
+        this$._email = email;
+    }
+    get Phone() {
+        const this$ = this;
+        return unwrap(this$._phone);
+    }
+    set Phone(phone) {
+        const this$ = this;
+        this$._phone = phone;
+    }
+    get Fax() {
+        const this$ = this;
+        return unwrap(this$._fax);
+    }
+    set Fax(fax) {
+        const this$ = this;
+        this$._fax = fax;
+    }
+    get Roles() {
+        const this$ = this;
+        return this$._roles;
+    }
+    set Roles(roles) {
+        const this$ = this;
+        this$._roles = roles;
+    }
+    get Comments() {
+        const this$ = this;
+        return this$._comments;
+    }
+    set Comments(comments) {
+        const this$ = this;
+        this$._comments = comments;
+    }
+    static make(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles, comments) {
+        return new Person(unwrap(orcid), unwrap(lastName), unwrap(firstName), unwrap(midInitials), unwrap(email), unwrap(phone), unwrap(fax), unwrap(address), unwrap(affiliation), roles, comments);
+    }
+    static create(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles, comments) {
+        const roles_1 = defaultArg(roles, []);
+        const comments_1 = defaultArg(comments, []);
+        return Person.make(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles_1, comments_1);
+    }
+    static get empty() {
+        return Person.create();
+    }
+    static tryGetByFullName(firstName, midInitials, lastName, persons) {
+        return tryFind((p) => {
+            if (midInitials === "") {
+                if (equals(p.FirstName, firstName)) {
+                    return equals(p.LastName, lastName);
+                }
+                else {
+                    return false;
+                }
+            }
+            else if (equals(p.FirstName, firstName) && equals(p.MidInitials, midInitials)) {
+                return equals(p.LastName, lastName);
+            }
+            else {
+                return false;
+            }
+        }, persons);
+    }
+    static existsByFullName(firstName, midInitials, lastName, persons) {
+        return persons.some((p) => ((midInitials === "") ? (equals(p.FirstName, firstName) && equals(p.LastName, lastName)) : ((equals(p.FirstName, firstName) && equals(p.MidInitials, midInitials)) && equals(p.LastName, lastName))));
+    }
+    static add(persons, person) {
+        return append(persons, singleton(person));
+    }
+    static removeByFullName(firstName, midInitials, lastName, persons) {
+        return persons.filter((p) => ((midInitials === "") ? !(equals(p.FirstName, firstName) && equals(p.LastName, lastName)) : !((equals(p.FirstName, firstName) && equals(p.MidInitials, midInitials)) && equals(p.LastName, lastName))));
+    }
+    Copy() {
+        const this$ = this;
+        const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
+        const nextRoles = ResizeArray_map((c_1) => c_1.Copy(), this$.Roles);
+        const orcid = this$.ORCID;
+        const lastName = this$.LastName;
+        const firstName = this$.FirstName;
+        const midInitials = this$.MidInitials;
+        const email = this$.EMail;
+        const phone = this$.Phone;
+        const fax = this$.Fax;
+        const address = this$.Address;
+        const affiliation = this$.Affiliation;
+        return Person.make(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, nextRoles, nextComments);
+    }
+    GetHashCode() {
+        const this$ = this;
+        return boxHashArray([boxHashOption(this$.ORCID), boxHashOption(this$.LastName), boxHashOption(this$.FirstName), boxHashOption(this$.MidInitials), boxHashOption(this$.EMail), boxHashOption(this$.Phone), boxHashOption(this$.Fax), boxHashOption(this$.Address), boxHashOption(this$.Affiliation), boxHashSeq(this$.Roles), boxHashSeq(this$.Comments)]) | 0;
+    }
+    Equals(obj) {
+        const this$ = this;
+        return hash(this$) === hash(obj);
+    }
+    toString() {
+        let arg, arg_1;
+        const this$ = this;
+        const sb = StringBuilder_$ctor();
+        StringBuilder__Append_Z721C83C5(sb, "Person {\n\t");
+        StringBuilder__Append_Z721C83C5(sb, join(",\n\t", map((tupledArg_1) => toText(printf("%s = %A"))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => map_1((o) => [tupledArg[0], o], tupledArg[1]), ofArray([["FirstName", this$.FirstName], ["LastName", this$.LastName], ["MidInitials", this$.MidInitials], ["EMail", this$.EMail], ["Phone", this$.Phone], ["Address", this$.Address], ["Affiliation", this$.Affiliation], ["Fax", this$.Fax], ["ORCID", this$.ORCID], ["Roles", (length(this$.Roles) > 0) ? ((arg = this$.Roles, toText(printf("%A"))(arg))) : undefined], ["Comments", (length(this$.Comments) > 0) ? ((arg_1 = this$.Comments, toText(printf("%A"))(arg_1))) : undefined]])))));
+        StringBuilder__Append_Z721C83C5(sb, "\n}");
+        return toString(sb);
+    }
+}
+export function Person_$reflection() {
+    return class_type("ARCtrl.Person", undefined, Person);
+}
+export function Person_$ctor_Z2F6491B5(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles, comments) {
+    return new Person(orcid, lastName, firstName, midInitials, email, phone, fax, address, affiliation, roles, comments);
+}

package/dist/ts/esm/ts/Core/Process/ColumnIndex.js

@@ -0,0 +1,204 @@
+import { tryParse } from "@fable-org/fable-library-js/Int32.js";
+import { FSharpRef } from "@fable-org/fable-library-js/Types.js";
+import { bind, value } from "@fable-org/fable-library-js/Option.js";
+import { Comment$ } from "../Comment.js";
+import { equals, int32ToString } from "@fable-org/fable-library-js/Util.js";
+import { tryItem } from "../CommentList.js";
+import { findIndex } from "@fable-org/fable-library-js/Seq.js";
+import { ProtocolParameter } from "./ProtocolParameter.js";
+import { Factor } from "./Factor.js";
+import { MaterialAttribute_fromString_5980DC03 } from "./MaterialAttribute.js";
+import { Component_fromISAString_7C9A7CF8 } from "./Component.js";
+function tryInt(str) {
+    let matchValue;
+    let outArg = 0;
+    matchValue = [tryParse(str, 511, false, 32, new FSharpRef(() => outArg, (v) => {
+            outArg = (v | 0);
+        })), outArg];
+    if (matchValue[0]) {
+        return matchValue[1];
+    }
+    else {
+        return undefined;
+    }
+}
+export const orderName = "ColumnIndex";
+export function createOrderComment(index) {
+    return Comment$.create(orderName, int32ToString(index));
+}
+export function tryGetIndex(comments) {
+    const matchValue = tryItem(orderName, comments);
+    if (matchValue != null) {
+        const ci = value(matchValue);
+        const i = findIndex((c) => equals(c.Name, orderName), comments) | 0;
+        comments.splice(i, 1);
+        return tryInt(ci);
+    }
+    else {
+        return undefined;
+    }
+}
+export function setOntologyAnnotationIndexInplace(i, oa) {
+    void (oa.Comments.push(createOrderComment(i)));
+}
+export function setOntologyAnnotationIndex(i, oa) {
+    const oac = oa.Copy();
+    setOntologyAnnotationIndexInplace(i, oac);
+    return oac;
+}
+export function tryGetOntologyAnnotationIndex(oa) {
+    return tryGetIndex(oa.Comments);
+}
+export function tryGetParameterIndex(param) {
+    return bind((oa) => tryGetIndex(oa.Comments), param.ParameterName);
+}
+export function tryGetParameterColumnIndex(paramValue) {
+    return bind(tryGetParameterIndex, paramValue.Category);
+}
+export function tryGetFactorIndex(factor) {
+    return bind((oa) => tryGetIndex(oa.Comments), factor.FactorType);
+}
+export function tryGetFactorColumnIndex(factorValue) {
+    return bind(tryGetFactorIndex, factorValue.Category);
+}
+export function tryGetCharacteristicIndex(characteristic) {
+    return bind((oa) => tryGetIndex(oa.Comments), characteristic.CharacteristicType);
+}
+export function tryGetCharacteristicColumnIndex(characteristicValue) {
+    return bind(tryGetCharacteristicIndex, characteristicValue.Category);
+}
+export function tryGetComponentIndex(comp) {
+    return bind((oa) => tryGetIndex(oa.Comments), comp.ComponentType);
+}
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
+    return Factor.fromString(name, term, source, accession, [createOrderComment(valueIndex)]);
+}
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F(f) {
+    return value(tryGetOntologyAnnotationIndex(f));
+}
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this$) {
+    return value(tryGetOntologyAnnotationIndex(this$));
+}
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F(f) {
+    return tryGetOntologyAnnotationIndex(f);
+}
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex(this$) {
+    return tryGetOntologyAnnotationIndex(this$);
+}
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(i, oa) {
+    return setOntologyAnnotationIndex(i, oa);
+}
+export function ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(this$, i) {
+    setOntologyAnnotationIndexInplace(i, this$);
+}
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+export function ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
+    return Factor.fromString(name, term, source, accession, [createOrderComment(valueIndex)]);
+}
+export function ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9(f) {
+    return value(tryGetFactorIndex(f));
+}
+export function ARCtrl_Process_Factor__Factor_GetColumnIndex(this$) {
+    return value(tryGetFactorIndex(this$));
+}
+export function ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9(f) {
+    return tryGetFactorIndex(f);
+}
+export function ARCtrl_Process_Factor__Factor_TryGetColumnIndex(this$) {
+    return tryGetFactorIndex(this$);
+}
+export function ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732(f) {
+    return value(tryGetFactorColumnIndex(f));
+}
+export function ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex(this$) {
+    return value(tryGetFactorColumnIndex(this$));
+}
+export function ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732(f) {
+    return tryGetFactorColumnIndex(f);
+}
+export function ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex(this$) {
+    return tryGetFactorColumnIndex(this$);
+}
+/**
+ * Create a ISAJson characteristic from ISATab string entries
+ */
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static(term, source, accession, valueIndex) {
+    return MaterialAttribute_fromString_5980DC03(term, source, accession, [createOrderComment(valueIndex)]);
+}
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD(m) {
+    return value(tryGetCharacteristicIndex(m));
+}
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex(this$) {
+    return value(tryGetCharacteristicIndex(this$));
+}
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD(m) {
+    return tryGetCharacteristicIndex(m);
+}
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex(this$) {
+    return tryGetCharacteristicIndex(this$);
+}
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8(m) {
+    return value(tryGetCharacteristicColumnIndex(m));
+}
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this$) {
+    return value(tryGetCharacteristicColumnIndex(this$));
+}
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8(m) {
+    return tryGetCharacteristicColumnIndex(m);
+}
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex(this$) {
+    return tryGetCharacteristicColumnIndex(this$);
+}
+/**
+ * Create a ISAJson parameter from ISATab string entries
+ */
+export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static(term, source, accession, valueIndex) {
+    return ProtocolParameter.fromString(term, source, accession, [createOrderComment(valueIndex)]);
+}
+export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15(p) {
+    return value(tryGetParameterIndex(p));
+}
+export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex(this$) {
+    return value(tryGetParameterIndex(this$));
+}
+export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15(p) {
+    return tryGetParameterIndex(p);
+}
+export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(this$) {
+    return tryGetParameterIndex(this$);
+}
+export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263(p) {
+    return value(tryGetParameterColumnIndex(p));
+}
+export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this$) {
+    return value(tryGetParameterColumnIndex(this$));
+}
+export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263(p) {
+    return tryGetParameterColumnIndex(p);
+}
+export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex(this$) {
+    return tryGetParameterColumnIndex(this$);
+}
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+export function ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
+    return Component_fromISAString_7C9A7CF8(name, term, source, accession, [createOrderComment(valueIndex)]);
+}
+export function ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25(f) {
+    return value(tryGetComponentIndex(f));
+}
+export function ARCtrl_Process_Component__Component_GetColumnIndex(this$) {
+    return value(tryGetComponentIndex(this$));
+}
+export function ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25(f) {
+    return tryGetComponentIndex(f);
+}
+export function ARCtrl_Process_Component__Component_TryGetColumnIndex(this$) {
+    return tryGetComponentIndex(this$);
+}