@nfdi4plants/arctrl 2.5.1 → 3.0.0-alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1596) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +1 -1
  3. package/dist/ts/cjs/index.js +39 -0
  4. package/dist/ts/cjs/ts/ARC.js +965 -0
  5. package/dist/ts/cjs/ts/Contract/ARC.js +61 -0
  6. package/dist/ts/cjs/ts/Contract/ArcAssay.js +103 -0
  7. package/dist/ts/cjs/ts/Contract/ArcInvestigation.js +77 -0
  8. package/dist/ts/cjs/ts/Contract/ArcRun.js +103 -0
  9. package/dist/ts/cjs/ts/Contract/ArcStudy.js +103 -0
  10. package/dist/ts/cjs/ts/Contract/ArcWorkflow.js +104 -0
  11. package/dist/ts/cjs/ts/Contract/Contract.js +100 -0
  12. package/dist/ts/cjs/ts/Contract/Datamap.js +314 -0
  13. package/dist/ts/cjs/ts/Contract/Git.js +94 -0
  14. package/dist/ts/cjs/ts/Contract/ValidationPackagesConfig.js +97 -0
  15. package/dist/ts/cjs/ts/ContractIO/ContractIO.js +217 -0
  16. package/dist/ts/cjs/ts/ContractIO/FileSystemHelper.js +205 -0
  17. package/dist/ts/cjs/ts/Conversion.js +1700 -0
  18. package/dist/ts/cjs/ts/Core/ArcTypes.js +3803 -0
  19. package/dist/ts/cjs/ts/Core/Comment.js +106 -0
  20. package/dist/ts/cjs/ts/Core/CommentList.js +134 -0
  21. package/dist/ts/cjs/ts/Core/Conversion.js +1131 -0
  22. package/dist/ts/cjs/ts/Core/Data.js +194 -0
  23. package/dist/ts/cjs/ts/Core/DataContext.js +141 -0
  24. package/dist/ts/cjs/ts/Core/DataFile.js +98 -0
  25. package/dist/ts/cjs/ts/Core/DataMap.js +185 -0
  26. package/dist/ts/cjs/ts/Core/Helper/Collections.js +419 -0
  27. package/dist/ts/cjs/ts/Core/Helper/HashCodes.js +40 -0
  28. package/dist/ts/cjs/ts/Core/Helper/Identifier.js +329 -0
  29. package/dist/ts/cjs/ts/Core/Helper/ORCID.js +40 -0
  30. package/dist/ts/cjs/ts/Core/Helper/Printer.js +2 -0
  31. package/dist/ts/cjs/ts/Core/Helper/Regex.js +616 -0
  32. package/dist/ts/cjs/ts/Core/Helper/SemVer.js +59 -0
  33. package/dist/ts/cjs/ts/Core/Helper/Url.js +40 -0
  34. package/dist/ts/cjs/ts/Core/IPropertyValue.js +2 -0
  35. package/dist/ts/cjs/ts/Core/IdentifierSetters.js +27 -0
  36. package/dist/ts/cjs/ts/Core/OntologyAnnotation.js +215 -0
  37. package/dist/ts/cjs/ts/Core/OntologySourceReference.js +94 -0
  38. package/dist/ts/cjs/ts/Core/Person.js +196 -0
  39. package/dist/ts/cjs/ts/Core/Process/ColumnIndex.js +258 -0
  40. package/dist/ts/cjs/ts/Core/Process/Component.js +200 -0
  41. package/dist/ts/cjs/ts/Core/Process/Factor.js +111 -0
  42. package/dist/ts/cjs/ts/Core/Process/FactorValue.js +143 -0
  43. package/dist/ts/cjs/ts/Core/Process/Material.js +68 -0
  44. package/dist/ts/cjs/ts/Core/Process/MaterialAttribute.js +103 -0
  45. package/dist/ts/cjs/ts/Core/Process/MaterialAttributeValue.js +160 -0
  46. package/dist/ts/cjs/ts/Core/Process/MaterialType.js +51 -0
  47. package/dist/ts/cjs/ts/Core/Process/Process.js +371 -0
  48. package/dist/ts/cjs/ts/Core/Process/ProcessInput.js +321 -0
  49. package/dist/ts/cjs/ts/Core/Process/ProcessOutput.js +282 -0
  50. package/dist/ts/cjs/ts/Core/Process/ProcessParameterValue.js +141 -0
  51. package/dist/ts/cjs/ts/Core/Process/ProcessSequence.js +250 -0
  52. package/dist/ts/cjs/ts/Core/Process/Protocol.js +248 -0
  53. package/dist/ts/cjs/ts/Core/Process/ProtocolParameter.js +75 -0
  54. package/dist/ts/cjs/ts/Core/Process/Sample.js +73 -0
  55. package/dist/ts/cjs/ts/Core/Process/Source.js +56 -0
  56. package/dist/ts/cjs/ts/Core/Publication.js +118 -0
  57. package/dist/ts/cjs/ts/Core/Table/ArcTable.js +906 -0
  58. package/dist/ts/cjs/ts/Core/Table/ArcTableAux.js +582 -0
  59. package/dist/ts/cjs/ts/Core/Table/ArcTables.js +483 -0
  60. package/dist/ts/cjs/ts/Core/Table/CompositeCell.js +317 -0
  61. package/dist/ts/cjs/ts/Core/Table/CompositeColumn.js +58 -0
  62. package/dist/ts/cjs/ts/Core/Table/CompositeHeader.js +718 -0
  63. package/dist/ts/cjs/ts/Core/Template.js +196 -0
  64. package/dist/ts/cjs/ts/Core/Templates.js +86 -0
  65. package/dist/ts/cjs/ts/Core/URI.js +20 -0
  66. package/dist/ts/cjs/ts/Core/Value.js +191 -0
  67. package/dist/ts/cjs/ts/CrossAsync.js +35 -0
  68. package/dist/ts/cjs/ts/FileSystem/Commit.js +20 -0
  69. package/dist/ts/cjs/ts/FileSystem/DefaultGitattributes.js +4 -0
  70. package/dist/ts/cjs/ts/FileSystem/DefaultGitignore.js +4 -0
  71. package/dist/ts/cjs/ts/FileSystem/FileSystem.js +55 -0
  72. package/dist/ts/cjs/ts/FileSystem/FileSystemTree.js +322 -0
  73. package/dist/ts/cjs/ts/FileSystem/Path.js +63 -0
  74. package/dist/ts/cjs/ts/Json/Assay.js +234 -0
  75. package/dist/ts/cjs/ts/Json/Comment.js +119 -0
  76. package/dist/ts/cjs/ts/Json/Data.js +147 -0
  77. package/dist/ts/cjs/ts/Json/DataFile.js +54 -0
  78. package/dist/ts/cjs/ts/Json/DataMap/DataContext.js +40 -0
  79. package/dist/ts/cjs/ts/Json/DataMap/DataMap.js +30 -0
  80. package/dist/ts/cjs/ts/Json/Decode.js +126 -0
  81. package/dist/ts/cjs/ts/Json/Encode.js +75 -0
  82. package/dist/ts/cjs/ts/Json/IDTable.js +30 -0
  83. package/dist/ts/cjs/ts/Json/Investigation.js +254 -0
  84. package/dist/ts/cjs/ts/Json/OntologyAnnotation.js +207 -0
  85. package/dist/ts/cjs/ts/Json/OntologySourceReference.js +125 -0
  86. package/dist/ts/cjs/ts/Json/Person.js +338 -0
  87. package/dist/ts/cjs/ts/Json/Process/AssayMaterials.js +21 -0
  88. package/dist/ts/cjs/ts/Json/Process/Component.js +47 -0
  89. package/dist/ts/cjs/ts/Json/Process/Factor.js +58 -0
  90. package/dist/ts/cjs/ts/Json/Process/FactorValue.js +47 -0
  91. package/dist/ts/cjs/ts/Json/Process/Material.js +120 -0
  92. package/dist/ts/cjs/ts/Json/Process/MaterialAttribute.js +47 -0
  93. package/dist/ts/cjs/ts/Json/Process/MaterialAttributeValue.js +47 -0
  94. package/dist/ts/cjs/ts/Json/Process/MaterialType.js +46 -0
  95. package/dist/ts/cjs/ts/Json/Process/Process.js +109 -0
  96. package/dist/ts/cjs/ts/Json/Process/ProcessInput.js +38 -0
  97. package/dist/ts/cjs/ts/Json/Process/ProcessOutput.js +33 -0
  98. package/dist/ts/cjs/ts/Json/Process/ProcessParameterValue.js +33 -0
  99. package/dist/ts/cjs/ts/Json/Process/Protocol.js +180 -0
  100. package/dist/ts/cjs/ts/Json/Process/ProtocolParameter.js +47 -0
  101. package/dist/ts/cjs/ts/Json/Process/Sample.js +176 -0
  102. package/dist/ts/cjs/ts/Json/Process/Source.js +145 -0
  103. package/dist/ts/cjs/ts/Json/Process/StudyMaterials.js +23 -0
  104. package/dist/ts/cjs/ts/Json/Process/Value.js +39 -0
  105. package/dist/ts/cjs/ts/Json/PropertyValue.js +300 -0
  106. package/dist/ts/cjs/ts/Json/Publication.js +130 -0
  107. package/dist/ts/cjs/ts/Json/ROCrate/LDContext.js +123 -0
  108. package/dist/ts/cjs/ts/Json/ROCrate/LDGraph.js +88 -0
  109. package/dist/ts/cjs/ts/Json/ROCrate/LDNode.js +213 -0
  110. package/dist/ts/cjs/ts/Json/ROCrate/LDRef.js +25 -0
  111. package/dist/ts/cjs/ts/Json/ROCrate/LDValue.js +70 -0
  112. package/dist/ts/cjs/ts/Json/StringTable.js +63 -0
  113. package/dist/ts/cjs/ts/Json/Study.js +347 -0
  114. package/dist/ts/cjs/ts/Json/Table/ArcTable.js +230 -0
  115. package/dist/ts/cjs/ts/Json/Table/CellTable.js +58 -0
  116. package/dist/ts/cjs/ts/Json/Table/CompositeCell.js +103 -0
  117. package/dist/ts/cjs/ts/Json/Table/CompositeHeader.js +108 -0
  118. package/dist/ts/cjs/ts/Json/Table/IOType.js +16 -0
  119. package/dist/ts/cjs/ts/Json/Table/OATable.js +55 -0
  120. package/dist/ts/cjs/ts/Json/Table/Templates.js +106 -0
  121. package/dist/ts/cjs/ts/Json/context/rocrate/isa_assay_context.js +89 -0
  122. package/dist/ts/cjs/ts/Json/context/rocrate/isa_comment_context.js +47 -0
  123. package/dist/ts/cjs/ts/Json/context/rocrate/isa_data_context.js +61 -0
  124. package/dist/ts/cjs/ts/Json/context/rocrate/isa_investigation_context.js +97 -0
  125. package/dist/ts/cjs/ts/Json/context/rocrate/isa_material_context.js +58 -0
  126. package/dist/ts/cjs/ts/Json/context/rocrate/isa_ontology_annotation_context.js +56 -0
  127. package/dist/ts/cjs/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +62 -0
  128. package/dist/ts/cjs/ts/Json/context/rocrate/isa_organization_context.js +42 -0
  129. package/dist/ts/cjs/ts/Json/context/rocrate/isa_person_context.js +112 -0
  130. package/dist/ts/cjs/ts/Json/context/rocrate/isa_process_context.js +82 -0
  131. package/dist/ts/cjs/ts/Json/context/rocrate/isa_protocol_context.js +85 -0
  132. package/dist/ts/cjs/ts/Json/context/rocrate/isa_publication_context.js +66 -0
  133. package/dist/ts/cjs/ts/Json/context/rocrate/isa_sample_context.js +53 -0
  134. package/dist/ts/cjs/ts/Json/context/rocrate/isa_source_context.js +53 -0
  135. package/dist/ts/cjs/ts/Json/context/rocrate/isa_study_context.js +113 -0
  136. package/dist/ts/cjs/ts/Json/context/rocrate/property_value_context.js +61 -0
  137. package/dist/ts/cjs/ts/Json/context/rocrate/rocrate_context.js +63 -0
  138. package/dist/ts/cjs/ts/Json.js +195 -0
  139. package/dist/ts/cjs/ts/JsonIO/Assay.js +104 -0
  140. package/dist/ts/cjs/ts/JsonIO/Investigation.js +104 -0
  141. package/dist/ts/cjs/ts/JsonIO/OntologyAnnotation.js +77 -0
  142. package/dist/ts/cjs/ts/JsonIO/Study.js +104 -0
  143. package/dist/ts/cjs/ts/JsonIO/Table/Compression.js +47 -0
  144. package/dist/ts/cjs/ts/JsonIO/Table/Templates.js +92 -0
  145. package/dist/ts/cjs/ts/ROCrate/Generic/Comment.js +117 -0
  146. package/dist/ts/cjs/ts/ROCrate/Generic/Dataset.js +671 -0
  147. package/dist/ts/cjs/ts/ROCrate/Generic/DefinedTerm.js +117 -0
  148. package/dist/ts/cjs/ts/ROCrate/Generic/File.js +202 -0
  149. package/dist/ts/cjs/ts/ROCrate/Generic/LabProcess.js +240 -0
  150. package/dist/ts/cjs/ts/ROCrate/Generic/LabProtocol.js +277 -0
  151. package/dist/ts/cjs/ts/ROCrate/Generic/Organization.js +73 -0
  152. package/dist/ts/cjs/ts/ROCrate/Generic/Person.js +413 -0
  153. package/dist/ts/cjs/ts/ROCrate/Generic/PostalAddress.js +161 -0
  154. package/dist/ts/cjs/ts/ROCrate/Generic/PropertyValue.js +550 -0
  155. package/dist/ts/cjs/ts/ROCrate/Generic/Sample.js +141 -0
  156. package/dist/ts/cjs/ts/ROCrate/Generic/ScholarlyArticle.js +189 -0
  157. package/dist/ts/cjs/ts/ROCrate/Helper.js +7 -0
  158. package/dist/ts/cjs/ts/ROCrate/LDContext.js +284 -0
  159. package/dist/ts/cjs/ts/ROCrate/LDObject.js +984 -0
  160. package/dist/ts/cjs/ts/ROCrate/ROCrateContext.js +44 -0
  161. package/dist/ts/cjs/ts/ROCrateIO.js +64 -0
  162. package/dist/ts/cjs/ts/Spreadsheet/AnnotationTable/ArcTable.js +165 -0
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  164. package/dist/ts/cjs/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +79 -0
  165. package/dist/ts/cjs/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +476 -0
  166. package/dist/ts/cjs/ts/Spreadsheet/ArcAssay.js +218 -0
  167. package/dist/ts/cjs/ts/Spreadsheet/ArcInvestigation.js +340 -0
  168. package/dist/ts/cjs/ts/Spreadsheet/ArcRun.js +177 -0
  169. package/dist/ts/cjs/ts/Spreadsheet/ArcStudy.js +130 -0
  170. package/dist/ts/cjs/ts/Spreadsheet/ArcWorkflow.js +166 -0
  171. package/dist/ts/cjs/ts/Spreadsheet/CollectionAux.js +128 -0
  172. package/dist/ts/cjs/ts/Spreadsheet/DataMap.js +41 -0
  173. package/dist/ts/cjs/ts/Spreadsheet/DataMapTable/DataMapColumn.js +43 -0
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  178. package/dist/ts/cjs/ts/Spreadsheet/Metadata/Contacts.js +92 -0
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  181. package/dist/ts/cjs/ts/Spreadsheet/Metadata/Factors.js +83 -0
  182. package/dist/ts/cjs/ts/Spreadsheet/Metadata/OntologyAnnotation.js +65 -0
  183. package/dist/ts/cjs/ts/Spreadsheet/Metadata/OntologySourceReference.js +68 -0
  184. package/dist/ts/cjs/ts/Spreadsheet/Metadata/Protocols.js +103 -0
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  1538. package/fable_modules/fable-library-js.4.24.0/MapUtil.d.ts +0 -12
  1539. package/fable_modules/fable-library-js.4.24.0/MapUtil.js +0 -127
  1540. package/fable_modules/fable-library-js.4.24.0/MutableMap.d.ts +0 -52
  1541. package/fable_modules/fable-library-js.4.24.0/MutableMap.js +0 -327
  1542. package/fable_modules/fable-library-js.4.24.0/MutableSet.d.ts +0 -39
  1543. package/fable_modules/fable-library-js.4.24.0/MutableSet.js +0 -233
  1544. package/fable_modules/fable-library-js.4.24.0/Native.d.ts +0 -2
  1545. package/fable_modules/fable-library-js.4.24.0/Native.js +0 -8
  1546. package/fable_modules/fable-library-js.4.24.0/Numeric.d.ts +0 -19
  1547. package/fable_modules/fable-library-js.4.24.0/Numeric.js +0 -71
  1548. package/fable_modules/fable-library-js.4.24.0/Observable.d.ts +0 -32
  1549. package/fable_modules/fable-library-js.4.24.0/Observable.js +0 -113
  1550. package/fable_modules/fable-library-js.4.24.0/Option.d.ts +0 -28
  1551. package/fable_modules/fable-library-js.4.24.0/Option.js +0 -96
  1552. package/fable_modules/fable-library-js.4.24.0/README.md +0 -3
  1553. package/fable_modules/fable-library-js.4.24.0/Random.d.ts +0 -37
  1554. package/fable_modules/fable-library-js.4.24.0/Random.js +0 -170
  1555. package/fable_modules/fable-library-js.4.24.0/Range.d.ts +0 -12
  1556. package/fable_modules/fable-library-js.4.24.0/Range.js +0 -45
  1557. package/fable_modules/fable-library-js.4.24.0/Reflection.d.ts +0 -119
  1558. package/fable_modules/fable-library-js.4.24.0/Reflection.js +0 -461
  1559. package/fable_modules/fable-library-js.4.24.0/RegExp.d.ts +0 -10
  1560. package/fable_modules/fable-library-js.4.24.0/RegExp.js +0 -131
  1561. package/fable_modules/fable-library-js.4.24.0/Result.d.ts +0 -37
  1562. package/fable_modules/fable-library-js.4.24.0/Result.js +0 -165
  1563. package/fable_modules/fable-library-js.4.24.0/Seq.d.ts +0 -165
  1564. package/fable_modules/fable-library-js.4.24.0/Seq.js +0 -1378
  1565. package/fable_modules/fable-library-js.4.24.0/Seq2.d.ts +0 -18
  1566. package/fable_modules/fable-library-js.4.24.0/Seq2.js +0 -111
  1567. package/fable_modules/fable-library-js.4.24.0/Set.d.ts +0 -190
  1568. package/fable_modules/fable-library-js.4.24.0/Set.js +0 -1789
  1569. package/fable_modules/fable-library-js.4.24.0/String.d.ts +0 -58
  1570. package/fable_modules/fable-library-js.4.24.0/String.js +0 -554
  1571. package/fable_modules/fable-library-js.4.24.0/System.Collections.Generic.d.ts +0 -79
  1572. package/fable_modules/fable-library-js.4.24.0/System.Collections.Generic.js +0 -317
  1573. package/fable_modules/fable-library-js.4.24.0/System.Text.d.ts +0 -38
  1574. package/fable_modules/fable-library-js.4.24.0/System.Text.js +0 -162
  1575. package/fable_modules/fable-library-js.4.24.0/SystemException.d.ts +0 -5
  1576. package/fable_modules/fable-library-js.4.24.0/SystemException.js +0 -5
  1577. package/fable_modules/fable-library-js.4.24.0/TimeOnly.d.ts +0 -15
  1578. package/fable_modules/fable-library-js.4.24.0/TimeOnly.js +0 -122
  1579. package/fable_modules/fable-library-js.4.24.0/TimeSpan.d.ts +0 -34
  1580. package/fable_modules/fable-library-js.4.24.0/TimeSpan.js +0 -177
  1581. package/fable_modules/fable-library-js.4.24.0/Timer.d.ts +0 -19
  1582. package/fable_modules/fable-library-js.4.24.0/Timer.js +0 -67
  1583. package/fable_modules/fable-library-js.4.24.0/Types.d.ts +0 -58
  1584. package/fable_modules/fable-library-js.4.24.0/Types.js +0 -208
  1585. package/fable_modules/fable-library-js.4.24.0/Unicode.13.0.0.d.ts +0 -2
  1586. package/fable_modules/fable-library-js.4.24.0/Unicode.13.0.0.js +0 -4
  1587. package/fable_modules/fable-library-js.4.24.0/Uri.d.ts +0 -31
  1588. package/fable_modules/fable-library-js.4.24.0/Uri.js +0 -159
  1589. package/fable_modules/fable-library-js.4.24.0/Util.d.ts +0 -210
  1590. package/fable_modules/fable-library-js.4.24.0/Util.js +0 -769
  1591. package/fable_modules/fable-library-js.4.24.0/big.d.ts +0 -338
  1592. package/fable_modules/fable-library-js.4.24.0/lib/big.d.ts +0 -5
  1593. package/fable_modules/fable-library-js.4.24.0/lib/big.js +0 -825
  1594. package/fable_modules/fable-library-js.4.24.0/package.json +0 -24
  1595. package/fable_modules/project_cracked.json +0 -1
  1596. package/index.js +0 -16
package/Core/ArcTypes.js DELETED
@@ -1,2263 +0,0 @@
1
- import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
2
- import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
3
- import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.24.0/Util.js";
4
- import { ResizeArray_choose, ResizeArray_filter, ResizeArray_map } from "./Helper/Collections.js";
5
- import { DataMap__Copy } from "./DataMap.js";
6
- import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.24.0/Array.js";
7
- import { printf, toText } from "../fable_modules/fable-library-js.4.24.0/String.js";
8
- import { rangeDouble } from "../fable_modules/fable-library-js.4.24.0/Range.js";
9
- import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
10
- import { checkValidCharacters } from "./Helper/Identifier.js";
11
- import { ArcTablesAux_applyIOMap, ArcTablesAux_getIOMap, ArcTables_$reflection, ArcTables } from "./Table/ArcTables.js";
12
- import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
13
- import { Array_distinct } from "../fable_modules/fable-library-js.4.24.0/Seq2.js";
14
- import { FSharpRef } from "../fable_modules/fable-library-js.4.24.0/Types.js";
15
-
16
- export class ArcAssay extends ArcTables {
17
- constructor(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
18
- super(defaultArg(tables, []));
19
- let identifier_1;
20
- const performers_1 = defaultArg(performers, []);
21
- const comments_1 = defaultArg(comments, []);
22
- this["identifier@109"] = ((identifier_1 = identifier.trim(), (checkValidCharacters(identifier_1), identifier_1)));
23
- this.investigation = undefined;
24
- this["measurementType@114"] = measurementType;
25
- this["technologyType@115"] = technologyType;
26
- this["technologyPlatform@116"] = technologyPlatform;
27
- this.dataMap = datamap;
28
- this["performers@118-1"] = performers_1;
29
- this["comments@119-1"] = comments_1;
30
- this.staticHash = 0;
31
- }
32
- get Identifier() {
33
- const this$ = this;
34
- return this$["identifier@109"];
35
- }
36
- set Identifier(i) {
37
- const this$ = this;
38
- this$["identifier@109"] = i;
39
- }
40
- get Investigation() {
41
- const this$ = this;
42
- return unwrap(this$.investigation);
43
- }
44
- set Investigation(i) {
45
- const this$ = this;
46
- this$.investigation = i;
47
- }
48
- get MeasurementType() {
49
- const this$ = this;
50
- return unwrap(this$["measurementType@114"]);
51
- }
52
- set MeasurementType(n) {
53
- const this$ = this;
54
- this$["measurementType@114"] = n;
55
- }
56
- get TechnologyType() {
57
- const this$ = this;
58
- return unwrap(this$["technologyType@115"]);
59
- }
60
- set TechnologyType(n) {
61
- const this$ = this;
62
- this$["technologyType@115"] = n;
63
- }
64
- get TechnologyPlatform() {
65
- const this$ = this;
66
- return unwrap(this$["technologyPlatform@116"]);
67
- }
68
- set TechnologyPlatform(n) {
69
- const this$ = this;
70
- this$["technologyPlatform@116"] = n;
71
- }
72
- get DataMap() {
73
- const this$ = this;
74
- return unwrap(this$.dataMap);
75
- }
76
- set DataMap(n) {
77
- const this$ = this;
78
- this$.dataMap = n;
79
- }
80
- get Performers() {
81
- const this$ = this;
82
- return this$["performers@118-1"];
83
- }
84
- set Performers(n) {
85
- const this$ = this;
86
- this$["performers@118-1"] = n;
87
- }
88
- get Comments() {
89
- const this$ = this;
90
- return this$["comments@119-1"];
91
- }
92
- set Comments(n) {
93
- const this$ = this;
94
- this$["comments@119-1"] = n;
95
- }
96
- get StaticHash() {
97
- const this$ = this;
98
- return this$.staticHash | 0;
99
- }
100
- set StaticHash(h) {
101
- const this$ = this;
102
- this$.staticHash = (h | 0);
103
- }
104
- static init(identifier) {
105
- return new ArcAssay(identifier);
106
- }
107
- static create(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
108
- return new ArcAssay(identifier, unwrap(measurementType), unwrap(technologyType), unwrap(technologyPlatform), unwrap(tables), unwrap(datamap), unwrap(performers), unwrap(comments));
109
- }
110
- static make(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
111
- return new ArcAssay(identifier, unwrap(measurementType), unwrap(technologyType), unwrap(technologyPlatform), tables, unwrap(datamap), performers, comments);
112
- }
113
- static get FileName() {
114
- return "isa.assay.xlsx";
115
- }
116
- get StudiesRegisteredIn() {
117
- const this$ = this;
118
- const matchValue = this$.Investigation;
119
- if (matchValue == null) {
120
- return [];
121
- }
122
- else {
123
- const i = matchValue;
124
- return toArray(filter((s) => {
125
- const source = s.RegisteredAssayIdentifiers;
126
- return contains(this$.Identifier, source, {
127
- Equals: (x, y) => (x === y),
128
- GetHashCode: stringHash,
129
- });
130
- }, i.Studies));
131
- }
132
- }
133
- static addTable(table, index) {
134
- return (assay) => {
135
- const c = assay.Copy();
136
- c.AddTable(table, unwrap(index));
137
- return c;
138
- };
139
- }
140
- static addTables(tables, index) {
141
- return (assay) => {
142
- const c = assay.Copy();
143
- c.AddTables(tables, unwrap(index));
144
- return c;
145
- };
146
- }
147
- static initTable(tableName, index) {
148
- return (assay) => {
149
- const c = assay.Copy();
150
- return [c, c.InitTable(tableName, unwrap(index))];
151
- };
152
- }
153
- static initTables(tableNames, index) {
154
- return (assay) => {
155
- const c = assay.Copy();
156
- c.InitTables(tableNames, unwrap(index));
157
- return c;
158
- };
159
- }
160
- static getTableAt(index) {
161
- return (assay) => {
162
- const newAssay = assay.Copy();
163
- return newAssay.GetTableAt(index);
164
- };
165
- }
166
- static getTable(name) {
167
- return (assay) => {
168
- const newAssay = assay.Copy();
169
- return newAssay.GetTable(name);
170
- };
171
- }
172
- static updateTableAt(index, table) {
173
- return (assay) => {
174
- const newAssay = assay.Copy();
175
- newAssay.UpdateTableAt(index, table);
176
- return newAssay;
177
- };
178
- }
179
- static updateTable(name, table) {
180
- return (assay) => {
181
- const newAssay = assay.Copy();
182
- newAssay.UpdateTable(name, table);
183
- return newAssay;
184
- };
185
- }
186
- static setTableAt(index, table) {
187
- return (assay) => {
188
- const newAssay = assay.Copy();
189
- newAssay.SetTableAt(index, table);
190
- return newAssay;
191
- };
192
- }
193
- static setTable(name, table) {
194
- return (assay) => {
195
- const newAssay = assay.Copy();
196
- newAssay.SetTable(name, table);
197
- return newAssay;
198
- };
199
- }
200
- static removeTableAt(index) {
201
- return (assay) => {
202
- const newAssay = assay.Copy();
203
- newAssay.RemoveTableAt(index);
204
- return newAssay;
205
- };
206
- }
207
- static removeTable(name) {
208
- return (assay) => {
209
- const newAssay = assay.Copy();
210
- newAssay.RemoveTable(name);
211
- return newAssay;
212
- };
213
- }
214
- static mapTableAt(index, updateFun) {
215
- return (assay) => {
216
- const newAssay = assay.Copy();
217
- newAssay.MapTableAt(index, updateFun);
218
- return newAssay;
219
- };
220
- }
221
- static updateTable(name, updateFun) {
222
- return (assay) => {
223
- const newAssay = assay.Copy();
224
- newAssay.MapTable(name, updateFun);
225
- return newAssay;
226
- };
227
- }
228
- static renameTableAt(index, newName) {
229
- return (assay) => {
230
- const newAssay = assay.Copy();
231
- newAssay.RenameTableAt(index, newName);
232
- return newAssay;
233
- };
234
- }
235
- static renameTable(name, newName) {
236
- return (assay) => {
237
- const newAssay = assay.Copy();
238
- newAssay.RenameTable(name, newName);
239
- return newAssay;
240
- };
241
- }
242
- static addColumnAt(tableIndex, header, cells, columnIndex, forceReplace) {
243
- return (assay) => {
244
- const newAssay = assay.Copy();
245
- newAssay.AddColumnAt(tableIndex, header, unwrap(cells), unwrap(columnIndex), unwrap(forceReplace));
246
- return newAssay;
247
- };
248
- }
249
- static addColumn(tableName, header, cells, columnIndex, forceReplace) {
250
- return (assay) => {
251
- const newAssay = assay.Copy();
252
- newAssay.AddColumn(tableName, header, unwrap(cells), unwrap(columnIndex), unwrap(forceReplace));
253
- return newAssay;
254
- };
255
- }
256
- static removeColumnAt(tableIndex, columnIndex) {
257
- return (assay) => {
258
- const newAssay = assay.Copy();
259
- newAssay.RemoveColumnAt(tableIndex, columnIndex);
260
- return newAssay;
261
- };
262
- }
263
- static removeColumn(tableName, columnIndex) {
264
- return (assay) => {
265
- const newAssay = assay.Copy();
266
- newAssay.RemoveColumn(tableName, columnIndex);
267
- return newAssay;
268
- };
269
- }
270
- static updateColumnAt(tableIndex, columnIndex, header, cells) {
271
- return (assay) => {
272
- const newAssay = assay.Copy();
273
- newAssay.UpdateColumnAt(tableIndex, columnIndex, header, unwrap(cells));
274
- return newAssay;
275
- };
276
- }
277
- static updateColumn(tableName, columnIndex, header, cells) {
278
- return (assay) => {
279
- const newAssay = assay.Copy();
280
- newAssay.UpdateColumn(tableName, columnIndex, header, unwrap(cells));
281
- return newAssay;
282
- };
283
- }
284
- static getColumnAt(tableIndex, columnIndex) {
285
- return (assay) => {
286
- const newAssay = assay.Copy();
287
- return newAssay.GetColumnAt(tableIndex, columnIndex);
288
- };
289
- }
290
- static getColumn(tableName, columnIndex) {
291
- return (assay) => {
292
- const newAssay = assay.Copy();
293
- return newAssay.GetColumn(tableName, columnIndex);
294
- };
295
- }
296
- static addRowAt(tableIndex, cells, rowIndex) {
297
- return (assay) => {
298
- const newAssay = assay.Copy();
299
- newAssay.AddRowAt(tableIndex, unwrap(cells), unwrap(rowIndex));
300
- return newAssay;
301
- };
302
- }
303
- static addRow(tableName, cells, rowIndex) {
304
- return (assay) => {
305
- const newAssay = assay.Copy();
306
- newAssay.AddRow(tableName, unwrap(cells), unwrap(rowIndex));
307
- return newAssay;
308
- };
309
- }
310
- static removeRowAt(tableIndex, rowIndex) {
311
- return (assay) => {
312
- const newAssay = assay.Copy();
313
- newAssay.RemoveColumnAt(tableIndex, rowIndex);
314
- return newAssay;
315
- };
316
- }
317
- static removeRow(tableName, rowIndex) {
318
- return (assay) => {
319
- const newAssay = assay.Copy();
320
- newAssay.RemoveRow(tableName, rowIndex);
321
- return newAssay;
322
- };
323
- }
324
- static updateRowAt(tableIndex, rowIndex, cells) {
325
- return (assay) => {
326
- const newAssay = assay.Copy();
327
- newAssay.UpdateRowAt(tableIndex, rowIndex, cells);
328
- return newAssay;
329
- };
330
- }
331
- static updateRow(tableName, rowIndex, cells) {
332
- return (assay) => {
333
- const newAssay = assay.Copy();
334
- newAssay.UpdateRow(tableName, rowIndex, cells);
335
- return newAssay;
336
- };
337
- }
338
- static getRowAt(tableIndex, rowIndex) {
339
- return (assay) => {
340
- const newAssay = assay.Copy();
341
- return newAssay.GetRowAt(tableIndex, rowIndex);
342
- };
343
- }
344
- static getRow(tableName, rowIndex) {
345
- return (assay) => {
346
- const newAssay = assay.Copy();
347
- return newAssay.GetRow(tableName, rowIndex);
348
- };
349
- }
350
- static setPerformers(performers, assay) {
351
- assay.Performers = performers;
352
- return assay;
353
- }
354
- Copy() {
355
- const this$ = this;
356
- const nextTables = ResizeArray_map((c) => c.Copy(), this$.Tables);
357
- const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
358
- const nextDataMap = map(DataMap__Copy, this$.DataMap);
359
- const nextPerformers = ResizeArray_map((c_2) => c_2.Copy(), this$.Performers);
360
- const identifier = this$.Identifier;
361
- const measurementType = this$.MeasurementType;
362
- const technologyType = this$.TechnologyType;
363
- const technologyPlatform = this$.TechnologyPlatform;
364
- return ArcAssay.make(identifier, measurementType, technologyType, technologyPlatform, nextTables, nextDataMap, nextPerformers, nextComments);
365
- }
366
- UpdateBy(assay, onlyReplaceExisting, appendSequences) {
367
- const this$ = this;
368
- const onlyReplaceExisting_1 = defaultArg(onlyReplaceExisting, false);
369
- const appendSequences_1 = defaultArg(appendSequences, false);
370
- const updateAlways = !onlyReplaceExisting_1;
371
- if ((assay.MeasurementType != null) ? true : updateAlways) {
372
- this$.MeasurementType = assay.MeasurementType;
373
- }
374
- if ((assay.TechnologyType != null) ? true : updateAlways) {
375
- this$.TechnologyType = assay.TechnologyType;
376
- }
377
- if ((assay.TechnologyPlatform != null) ? true : updateAlways) {
378
- this$.TechnologyPlatform = assay.TechnologyPlatform;
379
- }
380
- if ((assay.Tables.length !== 0) ? true : updateAlways) {
381
- let s;
382
- const origin = this$.Tables;
383
- const next = assay.Tables;
384
- if (!appendSequences_1) {
385
- s = ResizeArray_map((x) => x, next);
386
- }
387
- else {
388
- const combined = [];
389
- let enumerator = getEnumerator(origin);
390
- try {
391
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
392
- const e = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
393
- if (!contains_1(e, combined, {
394
- Equals: equals,
395
- GetHashCode: safeHash,
396
- })) {
397
- void (combined.push(e));
398
- }
399
- }
400
- }
401
- finally {
402
- disposeSafe(enumerator);
403
- }
404
- let enumerator_1 = getEnumerator(next);
405
- try {
406
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
407
- const e_1 = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
408
- if (!contains_1(e_1, combined, {
409
- Equals: equals,
410
- GetHashCode: safeHash,
411
- })) {
412
- void (combined.push(e_1));
413
- }
414
- }
415
- }
416
- finally {
417
- disposeSafe(enumerator_1);
418
- }
419
- s = combined;
420
- }
421
- this$.Tables = s;
422
- }
423
- if ((assay.Performers.length !== 0) ? true : updateAlways) {
424
- let s_1;
425
- const origin_1 = this$.Performers;
426
- const next_1 = assay.Performers;
427
- if (!appendSequences_1) {
428
- s_1 = ResizeArray_map((x_3) => x_3, next_1);
429
- }
430
- else {
431
- const combined_1 = [];
432
- let enumerator_2 = getEnumerator(origin_1);
433
- try {
434
- while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
435
- const e_2 = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
436
- if (!contains_1(e_2, combined_1, {
437
- Equals: equals,
438
- GetHashCode: safeHash,
439
- })) {
440
- void (combined_1.push(e_2));
441
- }
442
- }
443
- }
444
- finally {
445
- disposeSafe(enumerator_2);
446
- }
447
- let enumerator_1_1 = getEnumerator(next_1);
448
- try {
449
- while (enumerator_1_1["System.Collections.IEnumerator.MoveNext"]()) {
450
- const e_1_1 = enumerator_1_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
451
- if (!contains_1(e_1_1, combined_1, {
452
- Equals: equals,
453
- GetHashCode: safeHash,
454
- })) {
455
- void (combined_1.push(e_1_1));
456
- }
457
- }
458
- }
459
- finally {
460
- disposeSafe(enumerator_1_1);
461
- }
462
- s_1 = combined_1;
463
- }
464
- this$.Performers = s_1;
465
- }
466
- if ((assay.Comments.length !== 0) ? true : updateAlways) {
467
- let s_2;
468
- const origin_2 = this$.Comments;
469
- const next_2 = assay.Comments;
470
- if (!appendSequences_1) {
471
- s_2 = ResizeArray_map((x_6) => x_6, next_2);
472
- }
473
- else {
474
- const combined_2 = [];
475
- let enumerator_3 = getEnumerator(origin_2);
476
- try {
477
- while (enumerator_3["System.Collections.IEnumerator.MoveNext"]()) {
478
- const e_3 = enumerator_3["System.Collections.Generic.IEnumerator`1.get_Current"]();
479
- if (!contains_1(e_3, combined_2, {
480
- Equals: equals,
481
- GetHashCode: safeHash,
482
- })) {
483
- void (combined_2.push(e_3));
484
- }
485
- }
486
- }
487
- finally {
488
- disposeSafe(enumerator_3);
489
- }
490
- let enumerator_1_2 = getEnumerator(next_2);
491
- try {
492
- while (enumerator_1_2["System.Collections.IEnumerator.MoveNext"]()) {
493
- const e_1_2 = enumerator_1_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
494
- if (!contains_1(e_1_2, combined_2, {
495
- Equals: equals,
496
- GetHashCode: safeHash,
497
- })) {
498
- void (combined_2.push(e_1_2));
499
- }
500
- }
501
- }
502
- finally {
503
- disposeSafe(enumerator_1_2);
504
- }
505
- s_2 = combined_2;
506
- }
507
- this$.Comments = s_2;
508
- }
509
- }
510
- toString() {
511
- const this$ = this;
512
- const arg = this$.Identifier;
513
- const arg_1 = this$.MeasurementType;
514
- const arg_2 = this$.TechnologyType;
515
- const arg_3 = this$.TechnologyPlatform;
516
- const arg_4 = this$.Tables;
517
- const arg_5 = this$.Performers;
518
- const arg_6 = this$.Comments;
519
- return toText(printf("ArcAssay({\r\n Identifier = \"%s\",\r\n MeasurementType = %A,\r\n TechnologyType = %A,\r\n TechnologyPlatform = %A,\r\n Tables = %A,\r\n Performers = %A,\r\n Comments = %A\r\n})"))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6);
520
- }
521
- AddToInvestigation(investigation) {
522
- const this$ = this;
523
- this$.Investigation = investigation;
524
- }
525
- RemoveFromInvestigation() {
526
- const this$ = this;
527
- this$.Investigation = undefined;
528
- }
529
- UpdateReferenceByAssayFile(assay, onlyReplaceExisting) {
530
- const this$ = this;
531
- const updateAlways = !defaultArg(onlyReplaceExisting, false);
532
- if ((assay.MeasurementType != null) ? true : updateAlways) {
533
- this$.MeasurementType = assay.MeasurementType;
534
- }
535
- if ((assay.TechnologyPlatform != null) ? true : updateAlways) {
536
- this$.TechnologyPlatform = assay.TechnologyPlatform;
537
- }
538
- if ((assay.TechnologyType != null) ? true : updateAlways) {
539
- this$.TechnologyType = assay.TechnologyType;
540
- }
541
- if ((assay.Tables.length !== 0) ? true : updateAlways) {
542
- this$.Tables = assay.Tables;
543
- }
544
- if ((assay.Comments.length !== 0) ? true : updateAlways) {
545
- this$.Comments = assay.Comments;
546
- }
547
- this$.DataMap = assay.DataMap;
548
- if ((assay.Performers.length !== 0) ? true : updateAlways) {
549
- this$.Performers = assay.Performers;
550
- }
551
- }
552
- StructurallyEquals(other) {
553
- let a, b, a_1, b_1, a_2, b_2;
554
- const this$ = this;
555
- return forAll((x) => (x === true), [this$.Identifier === other.Identifier, equals(this$.MeasurementType, other.MeasurementType), equals(this$.TechnologyType, other.TechnologyType), equals(this$.TechnologyPlatform, other.TechnologyPlatform), equals(this$.DataMap, other.DataMap), (a = this$.Tables, (b = other.Tables, (length(a) === length(b)) && fold((acc, e) => {
556
- if (acc) {
557
- return e;
558
- }
559
- else {
560
- return false;
561
- }
562
- }, true, toList(delay(() => map_1((i_1) => equals(item(i_1, a), item(i_1, b)), rangeDouble(0, 1, length(a) - 1))))))), (a_1 = this$.Performers, (b_1 = other.Performers, (length(a_1) === length(b_1)) && fold((acc_1, e_1) => {
563
- if (acc_1) {
564
- return e_1;
565
- }
566
- else {
567
- return false;
568
- }
569
- }, true, toList(delay(() => map_1((i_2) => equals(item(i_2, a_1), item(i_2, b_1)), rangeDouble(0, 1, length(a_1) - 1))))))), (a_2 = this$.Comments, (b_2 = other.Comments, (length(a_2) === length(b_2)) && fold((acc_2, e_2) => {
570
- if (acc_2) {
571
- return e_2;
572
- }
573
- else {
574
- return false;
575
- }
576
- }, true, toList(delay(() => map_1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))))]);
577
- }
578
- ReferenceEquals(other) {
579
- const this$ = this;
580
- return this$ === other;
581
- }
582
- Equals(other) {
583
- let assay;
584
- const this$ = this;
585
- return (other instanceof ArcAssay) && ((assay = other, this$.StructurallyEquals(assay)));
586
- }
587
- GetLightHashCode() {
588
- const this$ = this;
589
- return boxHashArray([this$.Identifier, boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashSeq(this$.Comments)]) | 0;
590
- }
591
- GetHashCode() {
592
- const this$ = this;
593
- return boxHashArray([this$.Identifier, boxHashOption(this$.MeasurementType), boxHashOption(this$.TechnologyType), boxHashOption(this$.TechnologyPlatform), boxHashOption(this$.DataMap), boxHashSeq(this$.Tables), boxHashSeq(this$.Performers), boxHashSeq(this$.Comments)]) | 0;
594
- }
595
- }
596
-
597
- export function ArcAssay_$reflection() {
598
- return class_type("ARCtrl.ArcAssay", undefined, ArcAssay, ArcTables_$reflection());
599
- }
600
-
601
- export function ArcAssay_$ctor_Z4900C8CC(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
602
- return new ArcAssay(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments);
603
- }
604
-
605
- export class ArcStudy extends ArcTables {
606
- constructor(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
607
- super(defaultArg(tables, []));
608
- let identifier_1;
609
- const publications_1 = defaultArg(publications, []);
610
- const contacts_1 = defaultArg(contacts, []);
611
- const studyDesignDescriptors_1 = defaultArg(studyDesignDescriptors, []);
612
- const registeredAssayIdentifiers_1 = defaultArg(registeredAssayIdentifiers, []);
613
- const comments_1 = defaultArg(comments, []);
614
- this["identifier@533"] = ((identifier_1 = identifier.trim(), (checkValidCharacters(identifier_1), identifier_1)));
615
- this.investigation = undefined;
616
- this["title@538"] = title;
617
- this["description@539"] = description;
618
- this["submissionDate@540"] = submissionDate;
619
- this["publicReleaseDate@541"] = publicReleaseDate;
620
- this["publications@542-1"] = publications_1;
621
- this["contacts@543-1"] = contacts_1;
622
- this["studyDesignDescriptors@544-1"] = studyDesignDescriptors_1;
623
- this["datamap@545"] = datamap;
624
- this["registeredAssayIdentifiers@546-1"] = registeredAssayIdentifiers_1;
625
- this["comments@547-1"] = comments_1;
626
- this.staticHash = 0;
627
- }
628
- get Identifier() {
629
- const this$ = this;
630
- return this$["identifier@533"];
631
- }
632
- set Identifier(i) {
633
- const this$ = this;
634
- this$["identifier@533"] = i;
635
- }
636
- get Investigation() {
637
- const this$ = this;
638
- return unwrap(this$.investigation);
639
- }
640
- set Investigation(i) {
641
- const this$ = this;
642
- this$.investigation = i;
643
- }
644
- get Title() {
645
- const this$ = this;
646
- return unwrap(this$["title@538"]);
647
- }
648
- set Title(n) {
649
- const this$ = this;
650
- this$["title@538"] = n;
651
- }
652
- get Description() {
653
- const this$ = this;
654
- return unwrap(this$["description@539"]);
655
- }
656
- set Description(n) {
657
- const this$ = this;
658
- this$["description@539"] = n;
659
- }
660
- get SubmissionDate() {
661
- const this$ = this;
662
- return unwrap(this$["submissionDate@540"]);
663
- }
664
- set SubmissionDate(n) {
665
- const this$ = this;
666
- this$["submissionDate@540"] = n;
667
- }
668
- get PublicReleaseDate() {
669
- const this$ = this;
670
- return unwrap(this$["publicReleaseDate@541"]);
671
- }
672
- set PublicReleaseDate(n) {
673
- const this$ = this;
674
- this$["publicReleaseDate@541"] = n;
675
- }
676
- get Publications() {
677
- const this$ = this;
678
- return this$["publications@542-1"];
679
- }
680
- set Publications(n) {
681
- const this$ = this;
682
- this$["publications@542-1"] = n;
683
- }
684
- get Contacts() {
685
- const this$ = this;
686
- return this$["contacts@543-1"];
687
- }
688
- set Contacts(n) {
689
- const this$ = this;
690
- this$["contacts@543-1"] = n;
691
- }
692
- get StudyDesignDescriptors() {
693
- const this$ = this;
694
- return this$["studyDesignDescriptors@544-1"];
695
- }
696
- set StudyDesignDescriptors(n) {
697
- const this$ = this;
698
- this$["studyDesignDescriptors@544-1"] = n;
699
- }
700
- get DataMap() {
701
- const this$ = this;
702
- return unwrap(this$["datamap@545"]);
703
- }
704
- set DataMap(n) {
705
- const this$ = this;
706
- this$["datamap@545"] = n;
707
- }
708
- get RegisteredAssayIdentifiers() {
709
- const this$ = this;
710
- return this$["registeredAssayIdentifiers@546-1"];
711
- }
712
- set RegisteredAssayIdentifiers(n) {
713
- const this$ = this;
714
- this$["registeredAssayIdentifiers@546-1"] = n;
715
- }
716
- get Comments() {
717
- const this$ = this;
718
- return this$["comments@547-1"];
719
- }
720
- set Comments(n) {
721
- const this$ = this;
722
- this$["comments@547-1"] = n;
723
- }
724
- get StaticHash() {
725
- const this$ = this;
726
- return this$.staticHash | 0;
727
- }
728
- set StaticHash(h) {
729
- const this$ = this;
730
- this$.staticHash = (h | 0);
731
- }
732
- static init(identifier) {
733
- return new ArcStudy(identifier);
734
- }
735
- static create(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
736
- return new ArcStudy(identifier, unwrap(title), unwrap(description), unwrap(submissionDate), unwrap(publicReleaseDate), unwrap(publications), unwrap(contacts), unwrap(studyDesignDescriptors), unwrap(tables), unwrap(datamap), unwrap(registeredAssayIdentifiers), unwrap(comments));
737
- }
738
- static make(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
739
- return new ArcStudy(identifier, unwrap(title), unwrap(description), unwrap(submissionDate), unwrap(publicReleaseDate), publications, contacts, studyDesignDescriptors, tables, unwrap(datamap), registeredAssayIdentifiers, comments);
740
- }
741
- get isEmpty() {
742
- const this$ = this;
743
- return ((((((((equals(this$.Title, undefined) && equals(this$.Description, undefined)) && equals(this$.SubmissionDate, undefined)) && equals(this$.PublicReleaseDate, undefined)) && (this$.Publications.length === 0)) && (this$.Contacts.length === 0)) && (this$.StudyDesignDescriptors.length === 0)) && (this$.Tables.length === 0)) && (this$.RegisteredAssayIdentifiers.length === 0)) && (this$.Comments.length === 0);
744
- }
745
- static get FileName() {
746
- return "isa.study.xlsx";
747
- }
748
- get RegisteredAssayIdentifierCount() {
749
- const this$ = this;
750
- return this$.RegisteredAssayIdentifiers.length | 0;
751
- }
752
- get RegisteredAssayCount() {
753
- const this$ = this;
754
- return this$.RegisteredAssays.length | 0;
755
- }
756
- get RegisteredAssays() {
757
- const this$ = this;
758
- let inv;
759
- const investigation = this$.Investigation;
760
- if (investigation != null) {
761
- inv = investigation;
762
- }
763
- else {
764
- throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
765
- }
766
- const collection = choose((assayIdentifier) => inv.TryGetAssay(assayIdentifier), this$.RegisteredAssayIdentifiers);
767
- return Array.from(collection);
768
- }
769
- get VacantAssayIdentifiers() {
770
- const this$ = this;
771
- let inv;
772
- const investigation = this$.Investigation;
773
- if (investigation != null) {
774
- inv = investigation;
775
- }
776
- else {
777
- throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
778
- }
779
- const collection = filter((arg) => !inv.ContainsAssay(arg), this$.RegisteredAssayIdentifiers);
780
- return Array.from(collection);
781
- }
782
- AddRegisteredAssay(assay) {
783
- const this$ = this;
784
- let inv;
785
- const investigation = this$.Investigation;
786
- if (investigation != null) {
787
- inv = investigation;
788
- }
789
- else {
790
- throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
791
- }
792
- inv.AddAssay(assay);
793
- inv.RegisterAssay(this$.Identifier, assay.Identifier);
794
- }
795
- static addRegisteredAssay(assay) {
796
- return (study) => {
797
- const newStudy = study.Copy();
798
- newStudy.AddRegisteredAssay(assay);
799
- return newStudy;
800
- };
801
- }
802
- InitRegisteredAssay(assayIdentifier) {
803
- const this$ = this;
804
- const assay = new ArcAssay(assayIdentifier);
805
- this$.AddRegisteredAssay(assay);
806
- return assay;
807
- }
808
- static initRegisteredAssay(assayIdentifier) {
809
- return (study) => {
810
- const copy = study.Copy();
811
- return [copy, copy.InitRegisteredAssay(assayIdentifier)];
812
- };
813
- }
814
- RegisterAssay(assayIdentifier) {
815
- const this$ = this;
816
- if (contains(assayIdentifier, this$.RegisteredAssayIdentifiers, {
817
- Equals: (x, y) => (x === y),
818
- GetHashCode: stringHash,
819
- })) {
820
- throw new Error(`Assay \`${assayIdentifier}\` is already registered on the study.`);
821
- }
822
- void (this$.RegisteredAssayIdentifiers.push(assayIdentifier));
823
- }
824
- static registerAssay(assayIdentifier) {
825
- return (study) => {
826
- const copy = study.Copy();
827
- copy.RegisterAssay(assayIdentifier);
828
- return copy;
829
- };
830
- }
831
- DeregisterAssay(assayIdentifier) {
832
- const this$ = this;
833
- removeInPlace(assayIdentifier, this$.RegisteredAssayIdentifiers, {
834
- Equals: (x, y) => (x === y),
835
- GetHashCode: stringHash,
836
- });
837
- }
838
- static deregisterAssay(assayIdentifier) {
839
- return (study) => {
840
- const copy = study.Copy();
841
- copy.DeregisterAssay(assayIdentifier);
842
- return copy;
843
- };
844
- }
845
- GetRegisteredAssay(assayIdentifier) {
846
- const this$ = this;
847
- if (!contains(assayIdentifier, this$.RegisteredAssayIdentifiers, {
848
- Equals: (x, y) => (x === y),
849
- GetHashCode: stringHash,
850
- })) {
851
- throw new Error(`Assay \`${assayIdentifier}\` is not registered on the study.`);
852
- }
853
- let inv;
854
- const investigation = this$.Investigation;
855
- if (investigation != null) {
856
- inv = investigation;
857
- }
858
- else {
859
- throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
860
- }
861
- return inv.GetAssay(assayIdentifier);
862
- }
863
- static getRegisteredAssay(assayIdentifier) {
864
- return (study) => {
865
- const copy = study.Copy();
866
- return copy.GetRegisteredAssay(assayIdentifier);
867
- };
868
- }
869
- static getRegisteredAssays() {
870
- return (study) => {
871
- const copy = study.Copy();
872
- return copy.RegisteredAssays;
873
- };
874
- }
875
- GetRegisteredAssaysOrIdentifier() {
876
- const this$ = this;
877
- const matchValue = this$.Investigation;
878
- if (matchValue == null) {
879
- return ResizeArray_map((identifier_1) => ArcAssay.init(identifier_1), this$.RegisteredAssayIdentifiers);
880
- }
881
- else {
882
- const i = matchValue;
883
- return ResizeArray_map((identifier) => {
884
- const matchValue_1 = i.TryGetAssay(identifier);
885
- if (matchValue_1 == null) {
886
- return ArcAssay.init(identifier);
887
- }
888
- else {
889
- return matchValue_1;
890
- }
891
- }, this$.RegisteredAssayIdentifiers);
892
- }
893
- }
894
- static getRegisteredAssaysOrIdentifier() {
895
- return (study) => {
896
- const copy = study.Copy();
897
- return copy.GetRegisteredAssaysOrIdentifier();
898
- };
899
- }
900
- static addTable(table, index) {
901
- return (study) => {
902
- const c = study.Copy();
903
- c.AddTable(table, unwrap(index));
904
- return c;
905
- };
906
- }
907
- static addTables(tables, index) {
908
- return (study) => {
909
- const c = study.Copy();
910
- c.AddTables(tables, unwrap(index));
911
- return c;
912
- };
913
- }
914
- static initTable(tableName, index) {
915
- return (study) => {
916
- const c = study.Copy();
917
- return [c, c.InitTable(tableName, unwrap(index))];
918
- };
919
- }
920
- static initTables(tableNames, index) {
921
- return (study) => {
922
- const c = study.Copy();
923
- c.InitTables(tableNames, unwrap(index));
924
- return c;
925
- };
926
- }
927
- static getTableAt(index) {
928
- return (study) => {
929
- const newAssay = study.Copy();
930
- return newAssay.GetTableAt(index);
931
- };
932
- }
933
- static getTable(name) {
934
- return (study) => {
935
- const newAssay = study.Copy();
936
- return newAssay.GetTable(name);
937
- };
938
- }
939
- static updateTableAt(index, table) {
940
- return (study) => {
941
- const newAssay = study.Copy();
942
- newAssay.UpdateTableAt(index, table);
943
- return newAssay;
944
- };
945
- }
946
- static updateTable(name, table) {
947
- return (study) => {
948
- const newAssay = study.Copy();
949
- newAssay.UpdateTable(name, table);
950
- return newAssay;
951
- };
952
- }
953
- static setTableAt(index, table) {
954
- return (study) => {
955
- const newAssay = study.Copy();
956
- newAssay.SetTableAt(index, table);
957
- return newAssay;
958
- };
959
- }
960
- static setTable(name, table) {
961
- return (study) => {
962
- const newAssay = study.Copy();
963
- newAssay.SetTable(name, table);
964
- return newAssay;
965
- };
966
- }
967
- static removeTableAt(index) {
968
- return (study) => {
969
- const newAssay = study.Copy();
970
- newAssay.RemoveTableAt(index);
971
- return newAssay;
972
- };
973
- }
974
- static removeTable(name) {
975
- return (study) => {
976
- const newAssay = study.Copy();
977
- newAssay.RemoveTable(name);
978
- return newAssay;
979
- };
980
- }
981
- static mapTableAt(index, updateFun) {
982
- return (study) => {
983
- const newAssay = study.Copy();
984
- newAssay.MapTableAt(index, updateFun);
985
- return newAssay;
986
- };
987
- }
988
- static mapTable(name, updateFun) {
989
- return (study) => {
990
- const newAssay = study.Copy();
991
- newAssay.MapTable(name, updateFun);
992
- return newAssay;
993
- };
994
- }
995
- static renameTableAt(index, newName) {
996
- return (study) => {
997
- const newAssay = study.Copy();
998
- newAssay.RenameTableAt(index, newName);
999
- return newAssay;
1000
- };
1001
- }
1002
- static renameTable(name, newName) {
1003
- return (study) => {
1004
- const newAssay = study.Copy();
1005
- newAssay.RenameTable(name, newName);
1006
- return newAssay;
1007
- };
1008
- }
1009
- static addColumnAt(tableIndex, header, cells, columnIndex, forceReplace) {
1010
- return (study) => {
1011
- const newAssay = study.Copy();
1012
- newAssay.AddColumnAt(tableIndex, header, unwrap(cells), unwrap(columnIndex), unwrap(forceReplace));
1013
- return newAssay;
1014
- };
1015
- }
1016
- static addColumn(tableName, header, cells, columnIndex, forceReplace) {
1017
- return (study) => {
1018
- const newAssay = study.Copy();
1019
- newAssay.AddColumn(tableName, header, unwrap(cells), unwrap(columnIndex), unwrap(forceReplace));
1020
- return newAssay;
1021
- };
1022
- }
1023
- static removeColumnAt(tableIndex, columnIndex) {
1024
- return (study) => {
1025
- const newAssay = study.Copy();
1026
- newAssay.RemoveColumnAt(tableIndex, columnIndex);
1027
- return newAssay;
1028
- };
1029
- }
1030
- static removeColumn(tableName, columnIndex) {
1031
- return (study) => {
1032
- const newAssay = study.Copy();
1033
- newAssay.RemoveColumn(tableName, columnIndex);
1034
- return newAssay;
1035
- };
1036
- }
1037
- static updateColumnAt(tableIndex, columnIndex, header, cells) {
1038
- return (study) => {
1039
- const newAssay = study.Copy();
1040
- newAssay.UpdateColumnAt(tableIndex, columnIndex, header, unwrap(cells));
1041
- return newAssay;
1042
- };
1043
- }
1044
- static updateColumn(tableName, columnIndex, header, cells) {
1045
- return (study) => {
1046
- const newAssay = study.Copy();
1047
- newAssay.UpdateColumn(tableName, columnIndex, header, unwrap(cells));
1048
- return newAssay;
1049
- };
1050
- }
1051
- static getColumnAt(tableIndex, columnIndex) {
1052
- return (study) => {
1053
- const newAssay = study.Copy();
1054
- return newAssay.GetColumnAt(tableIndex, columnIndex);
1055
- };
1056
- }
1057
- static getColumn(tableName, columnIndex) {
1058
- return (study) => {
1059
- const newAssay = study.Copy();
1060
- return newAssay.GetColumn(tableName, columnIndex);
1061
- };
1062
- }
1063
- static addRowAt(tableIndex, cells, rowIndex) {
1064
- return (study) => {
1065
- const newAssay = study.Copy();
1066
- newAssay.AddRowAt(tableIndex, unwrap(cells), unwrap(rowIndex));
1067
- return newAssay;
1068
- };
1069
- }
1070
- static addRow(tableName, cells, rowIndex) {
1071
- return (study) => {
1072
- const newAssay = study.Copy();
1073
- newAssay.AddRow(tableName, unwrap(cells), unwrap(rowIndex));
1074
- return newAssay;
1075
- };
1076
- }
1077
- static removeRowAt(tableIndex, rowIndex) {
1078
- return (study) => {
1079
- const newAssay = study.Copy();
1080
- newAssay.RemoveColumnAt(tableIndex, rowIndex);
1081
- return newAssay;
1082
- };
1083
- }
1084
- static removeRow(tableName, rowIndex) {
1085
- return (study) => {
1086
- const newAssay = study.Copy();
1087
- newAssay.RemoveRow(tableName, rowIndex);
1088
- return newAssay;
1089
- };
1090
- }
1091
- static updateRowAt(tableIndex, rowIndex, cells) {
1092
- return (study) => {
1093
- const newAssay = study.Copy();
1094
- newAssay.UpdateRowAt(tableIndex, rowIndex, cells);
1095
- return newAssay;
1096
- };
1097
- }
1098
- static updateRow(tableName, rowIndex, cells) {
1099
- return (study) => {
1100
- const newAssay = study.Copy();
1101
- newAssay.UpdateRow(tableName, rowIndex, cells);
1102
- return newAssay;
1103
- };
1104
- }
1105
- static getRowAt(tableIndex, rowIndex) {
1106
- return (study) => {
1107
- const newAssay = study.Copy();
1108
- return newAssay.GetRowAt(tableIndex, rowIndex);
1109
- };
1110
- }
1111
- static getRow(tableName, rowIndex) {
1112
- return (study) => {
1113
- const newAssay = study.Copy();
1114
- return newAssay.GetRow(tableName, rowIndex);
1115
- };
1116
- }
1117
- AddToInvestigation(investigation) {
1118
- const this$ = this;
1119
- this$.Investigation = investigation;
1120
- }
1121
- RemoveFromInvestigation() {
1122
- const this$ = this;
1123
- this$.Investigation = undefined;
1124
- }
1125
- Copy(copyInvestigationRef) {
1126
- const this$ = this;
1127
- const copyInvestigationRef_1 = defaultArg(copyInvestigationRef, false);
1128
- const nextTables = [];
1129
- const nextAssayIdentifiers = Array.from(this$.RegisteredAssayIdentifiers);
1130
- let enumerator = getEnumerator(this$.Tables);
1131
- try {
1132
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
1133
- const table = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
1134
- const copy = table.Copy();
1135
- void (nextTables.push(copy));
1136
- }
1137
- }
1138
- finally {
1139
- disposeSafe(enumerator);
1140
- }
1141
- const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
1142
- const nextContacts = ResizeArray_map((c_1) => c_1.Copy(), this$.Contacts);
1143
- const nextPublications = ResizeArray_map((c_2) => c_2.Copy(), this$.Publications);
1144
- const nextStudyDesignDescriptors = ResizeArray_map((c_3) => c_3.Copy(), this$.StudyDesignDescriptors);
1145
- const nextDataMap = map(DataMap__Copy, this$.DataMap);
1146
- let study;
1147
- const identifier = this$.Identifier;
1148
- const title = this$.Title;
1149
- const description = this$.Description;
1150
- const submissionDate = this$.SubmissionDate;
1151
- const publicReleaseDate = this$.PublicReleaseDate;
1152
- study = ArcStudy.make(identifier, title, description, submissionDate, publicReleaseDate, nextPublications, nextContacts, nextStudyDesignDescriptors, nextTables, nextDataMap, nextAssayIdentifiers, nextComments);
1153
- if (copyInvestigationRef_1) {
1154
- study.Investigation = this$.Investigation;
1155
- }
1156
- return study;
1157
- }
1158
- UpdateReferenceByStudyFile(study, onlyReplaceExisting, keepUnusedRefTables) {
1159
- const this$ = this;
1160
- const updateAlways = !defaultArg(onlyReplaceExisting, false);
1161
- if ((study.Title != null) ? true : updateAlways) {
1162
- this$.Title = study.Title;
1163
- }
1164
- if ((study.Description != null) ? true : updateAlways) {
1165
- this$.Description = study.Description;
1166
- }
1167
- if ((study.SubmissionDate != null) ? true : updateAlways) {
1168
- this$.SubmissionDate = study.SubmissionDate;
1169
- }
1170
- if ((study.PublicReleaseDate != null) ? true : updateAlways) {
1171
- this$.PublicReleaseDate = study.PublicReleaseDate;
1172
- }
1173
- if ((study.Publications.length !== 0) ? true : updateAlways) {
1174
- this$.Publications = study.Publications;
1175
- }
1176
- if ((study.Contacts.length !== 0) ? true : updateAlways) {
1177
- this$.Contacts = study.Contacts;
1178
- }
1179
- if ((study.StudyDesignDescriptors.length !== 0) ? true : updateAlways) {
1180
- this$.StudyDesignDescriptors = study.StudyDesignDescriptors;
1181
- }
1182
- if ((study.Tables.length !== 0) ? true : updateAlways) {
1183
- const tables = ArcTables.updateReferenceTablesBySheets(new ArcTables(this$.Tables), new ArcTables(study.Tables), unwrap(keepUnusedRefTables));
1184
- this$.Tables = tables.Tables;
1185
- }
1186
- this$.DataMap = study.DataMap;
1187
- if ((study.RegisteredAssayIdentifiers.length !== 0) ? true : updateAlways) {
1188
- this$.RegisteredAssayIdentifiers = study.RegisteredAssayIdentifiers;
1189
- }
1190
- if ((study.Comments.length !== 0) ? true : updateAlways) {
1191
- this$.Comments = study.Comments;
1192
- }
1193
- }
1194
- StructurallyEquals(other) {
1195
- let a, b, a_1, b_1, a_2, b_2, a_3, b_3, a_4, b_4, a_5, b_5;
1196
- const this$ = this;
1197
- return forAll((x) => (x === true), [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.SubmissionDate, other.SubmissionDate), equals(this$.PublicReleaseDate, other.PublicReleaseDate), equals(this$.DataMap, other.DataMap), (a = this$.Publications, (b = other.Publications, (length(a) === length(b)) && fold((acc, e) => {
1198
- if (acc) {
1199
- return e;
1200
- }
1201
- else {
1202
- return false;
1203
- }
1204
- }, true, toList(delay(() => map_1((i_1) => equals(item(i_1, a), item(i_1, b)), rangeDouble(0, 1, length(a) - 1))))))), (a_1 = this$.Contacts, (b_1 = other.Contacts, (length(a_1) === length(b_1)) && fold((acc_1, e_1) => {
1205
- if (acc_1) {
1206
- return e_1;
1207
- }
1208
- else {
1209
- return false;
1210
- }
1211
- }, true, toList(delay(() => map_1((i_2) => equals(item(i_2, a_1), item(i_2, b_1)), rangeDouble(0, 1, length(a_1) - 1))))))), (a_2 = this$.StudyDesignDescriptors, (b_2 = other.StudyDesignDescriptors, (length(a_2) === length(b_2)) && fold((acc_2, e_2) => {
1212
- if (acc_2) {
1213
- return e_2;
1214
- }
1215
- else {
1216
- return false;
1217
- }
1218
- }, true, toList(delay(() => map_1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1))))))), (a_3 = this$.Tables, (b_3 = other.Tables, (length(a_3) === length(b_3)) && fold((acc_3, e_3) => {
1219
- if (acc_3) {
1220
- return e_3;
1221
- }
1222
- else {
1223
- return false;
1224
- }
1225
- }, true, toList(delay(() => map_1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1))))))), (a_4 = this$.RegisteredAssayIdentifiers, (b_4 = other.RegisteredAssayIdentifiers, (length(a_4) === length(b_4)) && fold((acc_4, e_4) => {
1226
- if (acc_4) {
1227
- return e_4;
1228
- }
1229
- else {
1230
- return false;
1231
- }
1232
- }, true, toList(delay(() => map_1((i_5) => (item(i_5, a_4) === item(i_5, b_4)), rangeDouble(0, 1, length(a_4) - 1))))))), (a_5 = this$.Comments, (b_5 = other.Comments, (length(a_5) === length(b_5)) && fold((acc_5, e_5) => {
1233
- if (acc_5) {
1234
- return e_5;
1235
- }
1236
- else {
1237
- return false;
1238
- }
1239
- }, true, toList(delay(() => map_1((i_6) => equals(item(i_6, a_5), item(i_6, b_5)), rangeDouble(0, 1, length(a_5) - 1)))))))]);
1240
- }
1241
- ReferenceEquals(other) {
1242
- const this$ = this;
1243
- return this$ === other;
1244
- }
1245
- toString() {
1246
- const this$ = this;
1247
- const arg = this$.Identifier;
1248
- const arg_1 = this$.Title;
1249
- const arg_2 = this$.Description;
1250
- const arg_3 = this$.SubmissionDate;
1251
- const arg_4 = this$.PublicReleaseDate;
1252
- const arg_5 = this$.Publications;
1253
- const arg_6 = this$.Contacts;
1254
- const arg_7 = this$.StudyDesignDescriptors;
1255
- const arg_8 = this$.Tables;
1256
- const arg_9 = this$.RegisteredAssayIdentifiers;
1257
- const arg_10 = this$.Comments;
1258
- return toText(printf("ArcStudy {\r\n Identifier = %A,\r\n Title = %A,\r\n Description = %A,\r\n SubmissionDate = %A,\r\n PublicReleaseDate = %A,\r\n Publications = %A,\r\n Contacts = %A,\r\n StudyDesignDescriptors = %A,\r\n Tables = %A,\r\n RegisteredAssayIdentifiers = %A,\r\n Comments = %A,\r\n}"))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10);
1259
- }
1260
- Equals(other) {
1261
- let s;
1262
- const this$ = this;
1263
- return (other instanceof ArcStudy) && ((s = other, this$.StructurallyEquals(s)));
1264
- }
1265
- GetHashCode() {
1266
- const this$ = this;
1267
- return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.SubmissionDate), boxHashOption(this$.PublicReleaseDate), boxHashOption(this$.DataMap), boxHashSeq(this$.Publications), boxHashSeq(this$.Contacts), boxHashSeq(this$.StudyDesignDescriptors), boxHashSeq(this$.Tables), boxHashSeq(this$.RegisteredAssayIdentifiers), boxHashSeq(this$.Comments)]) | 0;
1268
- }
1269
- GetLightHashCode() {
1270
- const this$ = this;
1271
- return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.SubmissionDate), boxHashOption(this$.PublicReleaseDate), boxHashSeq(this$.Publications), boxHashSeq(this$.Contacts), boxHashSeq(this$.StudyDesignDescriptors), boxHashSeq(this$.Tables), boxHashSeq(this$.RegisteredAssayIdentifiers), boxHashSeq(this$.Comments)]) | 0;
1272
- }
1273
- }
1274
-
1275
- export function ArcStudy_$reflection() {
1276
- return class_type("ARCtrl.ArcStudy", undefined, ArcStudy, ArcTables_$reflection());
1277
- }
1278
-
1279
- export function ArcStudy_$ctor_64321D5B(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
1280
- return new ArcStudy(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments);
1281
- }
1282
-
1283
- export class ArcInvestigation {
1284
- constructor(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks) {
1285
- const this$ = new FSharpRef(defaultOf());
1286
- this$.contents = this;
1287
- const ontologySourceReferences_1 = defaultArg(ontologySourceReferences, []);
1288
- const publications_1 = defaultArg(publications, []);
1289
- const contacts_1 = defaultArg(contacts, []);
1290
- let assays_1;
1291
- const ass = defaultArg(assays, []);
1292
- let enumerator = getEnumerator(ass);
1293
- try {
1294
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
1295
- const a = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
1296
- a.Investigation = this$.contents;
1297
- }
1298
- }
1299
- finally {
1300
- disposeSafe(enumerator);
1301
- }
1302
- assays_1 = ass;
1303
- let studies_1;
1304
- const sss = defaultArg(studies, []);
1305
- let enumerator_1 = getEnumerator(sss);
1306
- try {
1307
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
1308
- const s = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
1309
- s.Investigation = this$.contents;
1310
- }
1311
- }
1312
- finally {
1313
- disposeSafe(enumerator_1);
1314
- }
1315
- studies_1 = sss;
1316
- const registeredStudyIdentifiers_1 = defaultArg(registeredStudyIdentifiers, []);
1317
- const comments_1 = defaultArg(comments, []);
1318
- const remarks_1 = defaultArg(remarks, []);
1319
- this["identifier@1122"] = identifier;
1320
- this["title@1123"] = title;
1321
- this["description@1124"] = description;
1322
- this["submissionDate@1125"] = submissionDate;
1323
- this["publicReleaseDate@1126"] = publicReleaseDate;
1324
- this["ontologySourceReferences@1127-1"] = ontologySourceReferences_1;
1325
- this["publications@1128-1"] = publications_1;
1326
- this["contacts@1129-1"] = contacts_1;
1327
- this["assays@1130-1"] = assays_1;
1328
- this["studies@1131-1"] = studies_1;
1329
- this["registeredStudyIdentifiers@1132-1"] = registeredStudyIdentifiers_1;
1330
- this["comments@1133-1"] = comments_1;
1331
- this["remarks@1134-1"] = remarks_1;
1332
- this.staticHash = 0;
1333
- this["init@1103"] = 1;
1334
- }
1335
- get Identifier() {
1336
- const this$ = this;
1337
- return this$["identifier@1122"];
1338
- }
1339
- set Identifier(i) {
1340
- const this$ = this;
1341
- this$["identifier@1122"] = i;
1342
- }
1343
- get Title() {
1344
- const this$ = this;
1345
- return unwrap(this$["title@1123"]);
1346
- }
1347
- set Title(n) {
1348
- const this$ = this;
1349
- this$["title@1123"] = n;
1350
- }
1351
- get Description() {
1352
- const this$ = this;
1353
- return unwrap(this$["description@1124"]);
1354
- }
1355
- set Description(n) {
1356
- const this$ = this;
1357
- this$["description@1124"] = n;
1358
- }
1359
- get SubmissionDate() {
1360
- const this$ = this;
1361
- return unwrap(this$["submissionDate@1125"]);
1362
- }
1363
- set SubmissionDate(n) {
1364
- const this$ = this;
1365
- this$["submissionDate@1125"] = n;
1366
- }
1367
- get PublicReleaseDate() {
1368
- const this$ = this;
1369
- return unwrap(this$["publicReleaseDate@1126"]);
1370
- }
1371
- set PublicReleaseDate(n) {
1372
- const this$ = this;
1373
- this$["publicReleaseDate@1126"] = n;
1374
- }
1375
- get OntologySourceReferences() {
1376
- const this$ = this;
1377
- return this$["ontologySourceReferences@1127-1"];
1378
- }
1379
- set OntologySourceReferences(n) {
1380
- const this$ = this;
1381
- this$["ontologySourceReferences@1127-1"] = n;
1382
- }
1383
- get Publications() {
1384
- const this$ = this;
1385
- return this$["publications@1128-1"];
1386
- }
1387
- set Publications(n) {
1388
- const this$ = this;
1389
- this$["publications@1128-1"] = n;
1390
- }
1391
- get Contacts() {
1392
- const this$ = this;
1393
- return this$["contacts@1129-1"];
1394
- }
1395
- set Contacts(n) {
1396
- const this$ = this;
1397
- this$["contacts@1129-1"] = n;
1398
- }
1399
- get Assays() {
1400
- const this$ = this;
1401
- return this$["assays@1130-1"];
1402
- }
1403
- set Assays(n) {
1404
- const this$ = this;
1405
- this$["assays@1130-1"] = n;
1406
- }
1407
- get Studies() {
1408
- const this$ = this;
1409
- return this$["studies@1131-1"];
1410
- }
1411
- set Studies(n) {
1412
- const this$ = this;
1413
- this$["studies@1131-1"] = n;
1414
- }
1415
- get RegisteredStudyIdentifiers() {
1416
- const this$ = this;
1417
- return this$["registeredStudyIdentifiers@1132-1"];
1418
- }
1419
- set RegisteredStudyIdentifiers(n) {
1420
- const this$ = this;
1421
- this$["registeredStudyIdentifiers@1132-1"] = n;
1422
- }
1423
- get Comments() {
1424
- const this$ = this;
1425
- return this$["comments@1133-1"];
1426
- }
1427
- set Comments(n) {
1428
- const this$ = this;
1429
- this$["comments@1133-1"] = n;
1430
- }
1431
- get Remarks() {
1432
- const this$ = this;
1433
- return this$["remarks@1134-1"];
1434
- }
1435
- set Remarks(n) {
1436
- const this$ = this;
1437
- this$["remarks@1134-1"] = n;
1438
- }
1439
- get StaticHash() {
1440
- const this$ = this;
1441
- return this$.staticHash | 0;
1442
- }
1443
- set StaticHash(h) {
1444
- const this$ = this;
1445
- this$.staticHash = (h | 0);
1446
- }
1447
- static get FileName() {
1448
- return "isa.investigation.xlsx";
1449
- }
1450
- static init(identifier) {
1451
- return new ArcInvestigation(identifier);
1452
- }
1453
- static create(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks) {
1454
- return new ArcInvestigation(identifier, unwrap(title), unwrap(description), unwrap(submissionDate), unwrap(publicReleaseDate), unwrap(ontologySourceReferences), unwrap(publications), unwrap(contacts), unwrap(assays), unwrap(studies), unwrap(registeredStudyIdentifiers), unwrap(comments), unwrap(remarks));
1455
- }
1456
- static make(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks) {
1457
- return new ArcInvestigation(identifier, unwrap(title), unwrap(description), unwrap(submissionDate), unwrap(publicReleaseDate), ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks);
1458
- }
1459
- get AssayCount() {
1460
- const this$ = this;
1461
- return this$.Assays.length | 0;
1462
- }
1463
- get AssayIdentifiers() {
1464
- const this$ = this;
1465
- return Array.from(map_1((x) => x.Identifier, this$.Assays));
1466
- }
1467
- get UnregisteredAssays() {
1468
- const this$ = this;
1469
- return ResizeArray_filter((a) => !exists((s) => exists((i) => (i === a.Identifier), s.RegisteredAssayIdentifiers), this$.RegisteredStudies), this$.Assays);
1470
- }
1471
- AddAssay(assay, registerIn) {
1472
- const this$ = this;
1473
- const assayIdent = assay.Identifier;
1474
- const matchValue = tryFindIndex((x_1) => (x_1 === assayIdent), map_1((x) => x.Identifier, this$.Assays));
1475
- if (matchValue == null) {
1476
- }
1477
- else {
1478
- throw new Error(`Cannot create assay with name ${assayIdent}, as assay names must be unique and assay at index ${matchValue} has the same name.`);
1479
- }
1480
- assay.Investigation = this$;
1481
- void (this$.Assays.push(assay));
1482
- if (registerIn != null) {
1483
- let enumerator = getEnumerator(value_4(registerIn));
1484
- try {
1485
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
1486
- const study = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
1487
- study.RegisterAssay(assay.Identifier);
1488
- }
1489
- }
1490
- finally {
1491
- disposeSafe(enumerator);
1492
- }
1493
- }
1494
- }
1495
- static addAssay(assay, registerIn) {
1496
- return (inv) => {
1497
- const newInvestigation = inv.Copy();
1498
- newInvestigation.AddAssay(assay, unwrap(registerIn));
1499
- return newInvestigation;
1500
- };
1501
- }
1502
- InitAssay(assayIdentifier, registerIn) {
1503
- const this$ = this;
1504
- const assay = new ArcAssay(assayIdentifier);
1505
- this$.AddAssay(assay, unwrap(registerIn));
1506
- return assay;
1507
- }
1508
- static initAssay(assayIdentifier, registerIn) {
1509
- return (inv) => {
1510
- const newInvestigation = inv.Copy();
1511
- return newInvestigation.InitAssay(assayIdentifier, unwrap(registerIn));
1512
- };
1513
- }
1514
- DeleteAssayAt(index) {
1515
- const this$ = this;
1516
- this$.Assays.splice(index, 1);
1517
- }
1518
- static deleteAssayAt(index) {
1519
- return (inv) => {
1520
- const newInvestigation = inv.Copy();
1521
- newInvestigation.DeleteAssayAt(index);
1522
- return newInvestigation;
1523
- };
1524
- }
1525
- DeleteAssay(assayIdentifier) {
1526
- const this$ = this;
1527
- const index = this$.GetAssayIndex(assayIdentifier) | 0;
1528
- this$.DeleteAssayAt(index);
1529
- }
1530
- static deleteAssay(assayIdentifier) {
1531
- return (inv) => {
1532
- const newInv = inv.Copy();
1533
- newInv.DeleteAssay(assayIdentifier);
1534
- return newInv;
1535
- };
1536
- }
1537
- RemoveAssayAt(index) {
1538
- const this$ = this;
1539
- const ident = this$.GetAssayAt(index).Identifier;
1540
- this$.Assays.splice(index, 1);
1541
- let enumerator = getEnumerator(this$.Studies);
1542
- try {
1543
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
1544
- const study = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
1545
- study.DeregisterAssay(ident);
1546
- }
1547
- }
1548
- finally {
1549
- disposeSafe(enumerator);
1550
- }
1551
- }
1552
- static removeAssayAt(index) {
1553
- return (inv) => {
1554
- const newInvestigation = inv.Copy();
1555
- newInvestigation.RemoveAssayAt(index);
1556
- return newInvestigation;
1557
- };
1558
- }
1559
- RemoveAssay(assayIdentifier) {
1560
- const this$ = this;
1561
- const index = this$.GetAssayIndex(assayIdentifier) | 0;
1562
- this$.RemoveAssayAt(index);
1563
- }
1564
- static removeAssay(assayIdentifier) {
1565
- return (inv) => {
1566
- const newInv = inv.Copy();
1567
- newInv.RemoveAssay(assayIdentifier);
1568
- return newInv;
1569
- };
1570
- }
1571
- RenameAssay(oldIdentifier, newIdentifier) {
1572
- const this$ = this;
1573
- iterate((a) => {
1574
- if (a.Identifier === oldIdentifier) {
1575
- a.Identifier = newIdentifier;
1576
- }
1577
- }, this$.Assays);
1578
- iterate((s) => {
1579
- const index = tryFindIndex((ai) => (ai === oldIdentifier), s.RegisteredAssayIdentifiers);
1580
- if (index != null) {
1581
- const index_1 = index | 0;
1582
- s.RegisteredAssayIdentifiers[index_1] = newIdentifier;
1583
- }
1584
- }, this$.Studies);
1585
- }
1586
- static renameAssay(oldIdentifier, newIdentifier) {
1587
- return (inv) => {
1588
- const newInv = inv.Copy();
1589
- newInv.RenameAssay(oldIdentifier, newIdentifier);
1590
- return newInv;
1591
- };
1592
- }
1593
- SetAssayAt(index, assay) {
1594
- const this$ = this;
1595
- const assayIdent = assay.Identifier;
1596
- const matchValue = tryFindIndex((x) => (x === assayIdent), map_1((a) => a.Identifier, removeAt(index, this$.Assays)));
1597
- if (matchValue == null) {
1598
- }
1599
- else {
1600
- throw new Error(`Cannot create assay with name ${assayIdent}, as assay names must be unique and assay at index ${matchValue} has the same name.`);
1601
- }
1602
- assay.Investigation = this$;
1603
- this$.Assays[index] = assay;
1604
- this$.DeregisterMissingAssays();
1605
- }
1606
- static setAssayAt(index, assay) {
1607
- return (inv) => {
1608
- const newInvestigation = inv.Copy();
1609
- newInvestigation.SetAssayAt(index, assay);
1610
- return newInvestigation;
1611
- };
1612
- }
1613
- SetAssay(assayIdentifier, assay) {
1614
- const this$ = this;
1615
- const index = this$.GetAssayIndex(assayIdentifier) | 0;
1616
- this$.SetAssayAt(index, assay);
1617
- }
1618
- static setAssay(assayIdentifier, assay) {
1619
- return (inv) => {
1620
- const newInvestigation = inv.Copy();
1621
- newInvestigation.SetAssay(assayIdentifier, assay);
1622
- return newInvestigation;
1623
- };
1624
- }
1625
- GetAssayIndex(assayIdentifier) {
1626
- const this$ = this;
1627
- const index = this$.Assays.findIndex((a) => (a.Identifier === assayIdentifier)) | 0;
1628
- if (index === -1) {
1629
- throw new Error(`Unable to find assay with specified identifier '${assayIdentifier}'!`);
1630
- }
1631
- return index | 0;
1632
- }
1633
- static getAssayIndex(assayIdentifier) {
1634
- return (inv) => inv.GetAssayIndex(assayIdentifier);
1635
- }
1636
- GetAssayAt(index) {
1637
- const this$ = this;
1638
- return this$.Assays[index];
1639
- }
1640
- static getAssayAt(index) {
1641
- return (inv) => {
1642
- const newInvestigation = inv.Copy();
1643
- return newInvestigation.GetAssayAt(index);
1644
- };
1645
- }
1646
- GetAssay(assayIdentifier) {
1647
- const this$ = this;
1648
- const matchValue = this$.TryGetAssay(assayIdentifier);
1649
- if (matchValue == null) {
1650
- throw new Error(ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier(assayIdentifier, this$.Identifier));
1651
- }
1652
- else {
1653
- return matchValue;
1654
- }
1655
- }
1656
- static getAssay(assayIdentifier) {
1657
- return (inv) => {
1658
- const newInvestigation = inv.Copy();
1659
- return newInvestigation.GetAssay(assayIdentifier);
1660
- };
1661
- }
1662
- TryGetAssay(assayIdentifier) {
1663
- const this$ = this;
1664
- return tryFind((a) => (a.Identifier === assayIdentifier), this$.Assays);
1665
- }
1666
- static tryGetAssay(assayIdentifier) {
1667
- return (inv) => {
1668
- const newInvestigation = inv.Copy();
1669
- return newInvestigation.TryGetAssay(assayIdentifier);
1670
- };
1671
- }
1672
- ContainsAssay(assayIdentifier) {
1673
- const this$ = this;
1674
- return exists((a) => (a.Identifier === assayIdentifier), this$.Assays);
1675
- }
1676
- static containsAssay(assayIdentifier) {
1677
- return (inv) => inv.ContainsAssay(assayIdentifier);
1678
- }
1679
- get RegisteredStudyIdentifierCount() {
1680
- const this$ = this;
1681
- return this$.RegisteredStudyIdentifiers.length | 0;
1682
- }
1683
- get RegisteredStudies() {
1684
- const this$ = this;
1685
- return ResizeArray_choose((identifier) => this$.TryGetStudy(identifier), this$.RegisteredStudyIdentifiers);
1686
- }
1687
- get RegisteredStudyCount() {
1688
- const this$ = this;
1689
- return this$.RegisteredStudies.length | 0;
1690
- }
1691
- get VacantStudyIdentifiers() {
1692
- const this$ = this;
1693
- return ResizeArray_filter((arg) => !this$.ContainsStudy(arg), this$.RegisteredStudyIdentifiers);
1694
- }
1695
- get StudyCount() {
1696
- const this$ = this;
1697
- return this$.Studies.length | 0;
1698
- }
1699
- get StudyIdentifiers() {
1700
- const this$ = this;
1701
- return toArray(map_1((x) => x.Identifier, this$.Studies));
1702
- }
1703
- get UnregisteredStudies() {
1704
- const this$ = this;
1705
- return ResizeArray_filter((s) => {
1706
- let source, x;
1707
- return !((source = this$.RegisteredStudyIdentifiers, exists((x = s.Identifier, (y) => (x === y)), source)));
1708
- }, this$.Studies);
1709
- }
1710
- AddStudy(study) {
1711
- const this$ = this;
1712
- const study_1 = study;
1713
- const matchValue = tryFindIndex((x) => (x.Identifier === study_1.Identifier), this$.Studies);
1714
- if (matchValue == null) {
1715
- }
1716
- else {
1717
- throw new Error(`Cannot create study with name ${study_1.Identifier}, as study names must be unique and study at index ${matchValue} has the same name.`);
1718
- }
1719
- study.Investigation = this$;
1720
- void (this$.Studies.push(study));
1721
- }
1722
- static addStudy(study) {
1723
- return (inv) => {
1724
- const copy = inv.Copy();
1725
- copy.AddStudy(study);
1726
- return copy;
1727
- };
1728
- }
1729
- InitStudy(studyIdentifier) {
1730
- const this$ = this;
1731
- const study = ArcStudy.init(studyIdentifier);
1732
- this$.AddStudy(study);
1733
- return study;
1734
- }
1735
- static initStudy(studyIdentifier) {
1736
- return (inv) => {
1737
- const copy = inv.Copy();
1738
- return [copy, copy.InitStudy(studyIdentifier)];
1739
- };
1740
- }
1741
- RegisterStudy(studyIdentifier) {
1742
- const this$ = this;
1743
- const studyIdent = studyIdentifier;
1744
- const matchValue = tryFind((x) => (x === studyIdent), this$.StudyIdentifiers);
1745
- if (matchValue != null) {
1746
- }
1747
- else {
1748
- throw new Error(`The given study with identifier '${studyIdent}' must be added to Investigation before it can be registered.`);
1749
- }
1750
- const studyIdent_1 = studyIdentifier;
1751
- if (contains(studyIdent_1, this$.RegisteredStudyIdentifiers, {
1752
- Equals: (x_1, y) => (x_1 === y),
1753
- GetHashCode: stringHash,
1754
- })) {
1755
- throw new Error(`Study with identifier '${studyIdent_1}' is already registered!`);
1756
- }
1757
- void (this$.RegisteredStudyIdentifiers.push(studyIdentifier));
1758
- }
1759
- static registerStudy(studyIdentifier) {
1760
- return (inv) => {
1761
- const copy = inv.Copy();
1762
- copy.RegisterStudy(studyIdentifier);
1763
- return copy;
1764
- };
1765
- }
1766
- AddRegisteredStudy(study) {
1767
- const this$ = this;
1768
- this$.AddStudy(study);
1769
- this$.RegisterStudy(study.Identifier);
1770
- }
1771
- static addRegisteredStudy(study) {
1772
- return (inv) => {
1773
- const copy = inv.Copy();
1774
- const study_1 = study.Copy();
1775
- copy.AddRegisteredStudy(study_1);
1776
- return copy;
1777
- };
1778
- }
1779
- DeleteStudyAt(index) {
1780
- const this$ = this;
1781
- this$.Studies.splice(index, 1);
1782
- }
1783
- static deleteStudyAt(index) {
1784
- return (i) => {
1785
- const copy = i.Copy();
1786
- copy.DeleteStudyAt(index);
1787
- return copy;
1788
- };
1789
- }
1790
- DeleteStudy(studyIdentifier) {
1791
- const this$ = this;
1792
- const index = this$.Studies.findIndex((s) => (s.Identifier === studyIdentifier)) | 0;
1793
- this$.DeleteStudyAt(index);
1794
- }
1795
- static deleteStudy(studyIdentifier) {
1796
- return (i) => {
1797
- const copy = i.Copy();
1798
- copy.DeleteStudy(studyIdentifier);
1799
- return copy;
1800
- };
1801
- }
1802
- RemoveStudyAt(index) {
1803
- const this$ = this;
1804
- const ident = this$.GetStudyAt(index).Identifier;
1805
- this$.Studies.splice(index, 1);
1806
- this$.DeregisterStudy(ident);
1807
- }
1808
- static removeStudyAt(index) {
1809
- return (inv) => {
1810
- const newInv = inv.Copy();
1811
- newInv.RemoveStudyAt(index);
1812
- return newInv;
1813
- };
1814
- }
1815
- RemoveStudy(studyIdentifier) {
1816
- const this$ = this;
1817
- const index = this$.GetStudyIndex(studyIdentifier) | 0;
1818
- this$.RemoveStudyAt(index);
1819
- }
1820
- static removeStudy(studyIdentifier) {
1821
- return (inv) => {
1822
- const copy = inv.Copy();
1823
- copy.RemoveStudy(studyIdentifier);
1824
- return copy;
1825
- };
1826
- }
1827
- RenameStudy(oldIdentifier, newIdentifier) {
1828
- const this$ = this;
1829
- iterate((s) => {
1830
- if (s.Identifier === oldIdentifier) {
1831
- s.Identifier = newIdentifier;
1832
- }
1833
- }, this$.Studies);
1834
- const index = tryFindIndex((si) => (si === oldIdentifier), this$.RegisteredStudyIdentifiers);
1835
- if (index != null) {
1836
- const index_1 = index | 0;
1837
- this$.RegisteredStudyIdentifiers[index_1] = newIdentifier;
1838
- }
1839
- }
1840
- static renameStudy(oldIdentifier, newIdentifier) {
1841
- return (inv) => {
1842
- const newInv = inv.Copy();
1843
- newInv.RenameStudy(oldIdentifier, newIdentifier);
1844
- return newInv;
1845
- };
1846
- }
1847
- SetStudyAt(index, study) {
1848
- const this$ = this;
1849
- const study_1 = study;
1850
- const matchValue = tryFindIndex((x) => (x.Identifier === study_1.Identifier), removeAt(index, this$.Studies));
1851
- if (matchValue == null) {
1852
- }
1853
- else {
1854
- throw new Error(`Cannot create study with name ${study_1.Identifier}, as study names must be unique and study at index ${matchValue} has the same name.`);
1855
- }
1856
- study.Investigation = this$;
1857
- this$.Studies[index] = study;
1858
- }
1859
- static setStudyAt(index, study) {
1860
- return (inv) => {
1861
- const newInv = inv.Copy();
1862
- newInv.SetStudyAt(index, study);
1863
- return newInv;
1864
- };
1865
- }
1866
- SetStudy(studyIdentifier, study) {
1867
- const this$ = this;
1868
- const index = this$.GetStudyIndex(studyIdentifier) | 0;
1869
- this$.SetStudyAt(index, study);
1870
- }
1871
- static setStudy(studyIdentifier, study) {
1872
- return (inv) => {
1873
- const newInv = inv.Copy();
1874
- newInv.SetStudy(studyIdentifier, study);
1875
- return newInv;
1876
- };
1877
- }
1878
- GetStudyIndex(studyIdentifier) {
1879
- const this$ = this;
1880
- const index = this$.Studies.findIndex((s) => (s.Identifier === studyIdentifier)) | 0;
1881
- if (index === -1) {
1882
- throw new Error(`Unable to find study with specified identifier '${studyIdentifier}'!`);
1883
- }
1884
- return index | 0;
1885
- }
1886
- static getStudyIndex(studyIdentifier) {
1887
- return (inv) => inv.GetStudyIndex(studyIdentifier);
1888
- }
1889
- GetStudyAt(index) {
1890
- const this$ = this;
1891
- return this$.Studies[index];
1892
- }
1893
- static getStudyAt(index) {
1894
- return (inv) => {
1895
- const newInv = inv.Copy();
1896
- return newInv.GetStudyAt(index);
1897
- };
1898
- }
1899
- GetStudy(studyIdentifier) {
1900
- const this$ = this;
1901
- const matchValue = this$.TryGetStudy(studyIdentifier);
1902
- if (matchValue == null) {
1903
- throw new Error(ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier(studyIdentifier, this$.Identifier));
1904
- }
1905
- else {
1906
- return matchValue;
1907
- }
1908
- }
1909
- static getStudy(studyIdentifier) {
1910
- return (inv) => {
1911
- const newInv = inv.Copy();
1912
- return newInv.GetStudy(studyIdentifier);
1913
- };
1914
- }
1915
- TryGetStudy(studyIdentifier) {
1916
- const this$ = this;
1917
- return tryFind((s) => (s.Identifier === studyIdentifier), this$.Studies);
1918
- }
1919
- static tryGetStudy(studyIdentifier) {
1920
- return (inv) => {
1921
- const newInv = inv.Copy();
1922
- return newInv.TryGetStudy(studyIdentifier);
1923
- };
1924
- }
1925
- ContainsStudy(studyIdentifier) {
1926
- const this$ = this;
1927
- return exists((s) => (s.Identifier === studyIdentifier), this$.Studies);
1928
- }
1929
- static containsStudy(studyIdentifier) {
1930
- return (inv) => inv.ContainsStudy(studyIdentifier);
1931
- }
1932
- RegisterAssayAt(studyIndex, assayIdentifier) {
1933
- const this$ = this;
1934
- const study = this$.GetStudyAt(studyIndex);
1935
- const matchValue = tryFind((x) => (x === assayIdentifier), map_1((a) => a.Identifier, this$.Assays));
1936
- if (matchValue != null) {
1937
- }
1938
- else {
1939
- throw new Error("The given assay must be added to Investigation before it can be registered.");
1940
- }
1941
- const assayIdent_1 = assayIdentifier;
1942
- const matchValue_1 = tryFindIndex((x_1) => (x_1 === assayIdent_1), study.RegisteredAssayIdentifiers);
1943
- if (matchValue_1 == null) {
1944
- }
1945
- else {
1946
- throw new Error(`Cannot create assay with name ${assayIdent_1}, as assay names must be unique and assay at index ${matchValue_1} has the same name.`);
1947
- }
1948
- study.RegisterAssay(assayIdentifier);
1949
- }
1950
- static registerAssayAt(studyIndex, assayIdentifier) {
1951
- return (inv) => {
1952
- const copy = inv.Copy();
1953
- copy.RegisterAssayAt(studyIndex, assayIdentifier);
1954
- return copy;
1955
- };
1956
- }
1957
- RegisterAssay(studyIdentifier, assayIdentifier) {
1958
- const this$ = this;
1959
- const index = this$.GetStudyIndex(studyIdentifier) | 0;
1960
- this$.RegisterAssayAt(index, assayIdentifier);
1961
- }
1962
- static registerAssay(studyIdentifier, assayIdentifier) {
1963
- return (inv) => {
1964
- const copy = inv.Copy();
1965
- copy.RegisterAssay(studyIdentifier, assayIdentifier);
1966
- return copy;
1967
- };
1968
- }
1969
- DeregisterAssayAt(studyIndex, assayIdentifier) {
1970
- const this$ = this;
1971
- const study = this$.GetStudyAt(studyIndex);
1972
- study.DeregisterAssay(assayIdentifier);
1973
- }
1974
- static deregisterAssayAt(studyIndex, assayIdentifier) {
1975
- return (inv) => {
1976
- const copy = inv.Copy();
1977
- copy.DeregisterAssayAt(studyIndex, assayIdentifier);
1978
- return copy;
1979
- };
1980
- }
1981
- DeregisterAssay(studyIdentifier, assayIdentifier) {
1982
- const this$ = this;
1983
- const index = this$.GetStudyIndex(studyIdentifier) | 0;
1984
- this$.DeregisterAssayAt(index, assayIdentifier);
1985
- }
1986
- static deregisterAssay(studyIdentifier, assayIdentifier) {
1987
- return (inv) => {
1988
- const copy = inv.Copy();
1989
- copy.DeregisterAssay(studyIdentifier, assayIdentifier);
1990
- return copy;
1991
- };
1992
- }
1993
- DeregisterStudy(studyIdentifier) {
1994
- const this$ = this;
1995
- removeInPlace(studyIdentifier, this$.RegisteredStudyIdentifiers, {
1996
- Equals: (x, y) => (x === y),
1997
- GetHashCode: stringHash,
1998
- });
1999
- }
2000
- static deregisterStudy(studyIdentifier) {
2001
- return (i) => {
2002
- const copy = i.Copy();
2003
- copy.DeregisterStudy(studyIdentifier);
2004
- return copy;
2005
- };
2006
- }
2007
- GetAllPersons() {
2008
- const this$ = this;
2009
- const persons = [];
2010
- let enumerator = getEnumerator(this$.Assays);
2011
- try {
2012
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
2013
- const a = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
2014
- addRangeInPlace(a.Performers, persons);
2015
- }
2016
- }
2017
- finally {
2018
- disposeSafe(enumerator);
2019
- }
2020
- let enumerator_1 = getEnumerator(this$.Studies);
2021
- try {
2022
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
2023
- const s = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
2024
- addRangeInPlace(s.Contacts, persons);
2025
- }
2026
- }
2027
- finally {
2028
- disposeSafe(enumerator_1);
2029
- }
2030
- addRangeInPlace(this$.Contacts, persons);
2031
- return Array_distinct(Array.from(persons), {
2032
- Equals: equals,
2033
- GetHashCode: safeHash,
2034
- });
2035
- }
2036
- GetAllPublications() {
2037
- const this$ = this;
2038
- const pubs = [];
2039
- let enumerator = getEnumerator(this$.Studies);
2040
- try {
2041
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
2042
- const s = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
2043
- addRangeInPlace(s.Publications, pubs);
2044
- }
2045
- }
2046
- finally {
2047
- disposeSafe(enumerator);
2048
- }
2049
- addRangeInPlace(this$.Publications, pubs);
2050
- return Array_distinct(Array.from(pubs), {
2051
- Equals: equals,
2052
- GetHashCode: safeHash,
2053
- });
2054
- }
2055
- DeregisterMissingAssays() {
2056
- const this$ = this;
2057
- const inv = this$;
2058
- const existingAssays = inv.AssayIdentifiers;
2059
- let enumerator = getEnumerator(inv.Studies);
2060
- try {
2061
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
2062
- const study = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
2063
- const rai = study.RegisteredAssayIdentifiers;
2064
- let enumerator_1 = getEnumerator(Array.from(rai));
2065
- try {
2066
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
2067
- const registeredAssay = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
2068
- if (!contains(registeredAssay, existingAssays, {
2069
- Equals: (x, y) => (x === y),
2070
- GetHashCode: stringHash,
2071
- })) {
2072
- const value_1 = study.DeregisterAssay(registeredAssay);
2073
- }
2074
- }
2075
- }
2076
- finally {
2077
- disposeSafe(enumerator_1);
2078
- }
2079
- }
2080
- }
2081
- finally {
2082
- disposeSafe(enumerator);
2083
- }
2084
- }
2085
- static deregisterMissingAssays() {
2086
- return (inv) => {
2087
- const copy = inv.Copy();
2088
- copy.DeregisterMissingAssays();
2089
- return copy;
2090
- };
2091
- }
2092
- UpdateIOTypeByEntityID() {
2093
- let collection;
2094
- const this$ = this;
2095
- const ioMap = ArcTablesAux_getIOMap((collection = toList(delay(() => append_3(collect((study) => study.Tables, this$.Studies), delay(() => collect((assay) => assay.Tables, this$.Assays))))), Array.from(collection)));
2096
- let enumerator = getEnumerator(this$.Studies);
2097
- try {
2098
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
2099
- const study_1 = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
2100
- ArcTablesAux_applyIOMap(ioMap, study_1.Tables);
2101
- }
2102
- }
2103
- finally {
2104
- disposeSafe(enumerator);
2105
- }
2106
- let enumerator_1 = getEnumerator(this$.Assays);
2107
- try {
2108
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
2109
- const assay_1 = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
2110
- ArcTablesAux_applyIOMap(ioMap, assay_1.Tables);
2111
- }
2112
- }
2113
- finally {
2114
- disposeSafe(enumerator_1);
2115
- }
2116
- }
2117
- Copy() {
2118
- const this$ = this;
2119
- const nextAssays = [];
2120
- const nextStudies = [];
2121
- let enumerator = getEnumerator(this$.Assays);
2122
- try {
2123
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
2124
- const assay = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
2125
- const copy = assay.Copy();
2126
- void (nextAssays.push(copy));
2127
- }
2128
- }
2129
- finally {
2130
- disposeSafe(enumerator);
2131
- }
2132
- let enumerator_1 = getEnumerator(this$.Studies);
2133
- try {
2134
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
2135
- const study = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
2136
- const copy_1 = study.Copy();
2137
- void (nextStudies.push(copy_1));
2138
- }
2139
- }
2140
- finally {
2141
- disposeSafe(enumerator_1);
2142
- }
2143
- const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
2144
- const nextRemarks = ResizeArray_map((c_1) => c_1.Copy(), this$.Remarks);
2145
- const nextContacts = ResizeArray_map((c_2) => c_2.Copy(), this$.Contacts);
2146
- const nextPublications = ResizeArray_map((c_3) => c_3.Copy(), this$.Publications);
2147
- const nextOntologySourceReferences = ResizeArray_map((c_4) => c_4.Copy(), this$.OntologySourceReferences);
2148
- const nextStudyIdentifiers = Array.from(this$.RegisteredStudyIdentifiers);
2149
- return new ArcInvestigation(this$.Identifier, unwrap(this$.Title), unwrap(this$.Description), unwrap(this$.SubmissionDate), unwrap(this$.PublicReleaseDate), nextOntologySourceReferences, nextPublications, nextContacts, nextAssays, nextStudies, nextStudyIdentifiers, nextComments, nextRemarks);
2150
- }
2151
- StructurallyEquals(other) {
2152
- let a, b, a_1, b_1, a_2, b_2, a_3, b_3, a_4, b_4, a_5, b_5, a_6, b_6, a_7, b_7;
2153
- const this$ = this;
2154
- return forAll((x) => (x === true), [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.SubmissionDate, other.SubmissionDate), equals(this$.PublicReleaseDate, other.PublicReleaseDate), (a = this$.Publications, (b = other.Publications, (length(a) === length(b)) && fold((acc, e) => {
2155
- if (acc) {
2156
- return e;
2157
- }
2158
- else {
2159
- return false;
2160
- }
2161
- }, true, toList(delay(() => map_1((i_1) => equals(item(i_1, a), item(i_1, b)), rangeDouble(0, 1, length(a) - 1))))))), (a_1 = this$.Contacts, (b_1 = other.Contacts, (length(a_1) === length(b_1)) && fold((acc_1, e_1) => {
2162
- if (acc_1) {
2163
- return e_1;
2164
- }
2165
- else {
2166
- return false;
2167
- }
2168
- }, true, toList(delay(() => map_1((i_2) => equals(item(i_2, a_1), item(i_2, b_1)), rangeDouble(0, 1, length(a_1) - 1))))))), (a_2 = this$.OntologySourceReferences, (b_2 = other.OntologySourceReferences, (length(a_2) === length(b_2)) && fold((acc_2, e_2) => {
2169
- if (acc_2) {
2170
- return e_2;
2171
- }
2172
- else {
2173
- return false;
2174
- }
2175
- }, true, toList(delay(() => map_1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1))))))), (a_3 = this$.Assays, (b_3 = other.Assays, (length(a_3) === length(b_3)) && fold((acc_3, e_3) => {
2176
- if (acc_3) {
2177
- return e_3;
2178
- }
2179
- else {
2180
- return false;
2181
- }
2182
- }, true, toList(delay(() => map_1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1))))))), (a_4 = this$.Studies, (b_4 = other.Studies, (length(a_4) === length(b_4)) && fold((acc_4, e_4) => {
2183
- if (acc_4) {
2184
- return e_4;
2185
- }
2186
- else {
2187
- return false;
2188
- }
2189
- }, true, toList(delay(() => map_1((i_5) => equals(item(i_5, a_4), item(i_5, b_4)), rangeDouble(0, 1, length(a_4) - 1))))))), (a_5 = this$.RegisteredStudyIdentifiers, (b_5 = other.RegisteredStudyIdentifiers, (length(a_5) === length(b_5)) && fold((acc_5, e_5) => {
2190
- if (acc_5) {
2191
- return e_5;
2192
- }
2193
- else {
2194
- return false;
2195
- }
2196
- }, true, toList(delay(() => map_1((i_6) => (item(i_6, a_5) === item(i_6, b_5)), rangeDouble(0, 1, length(a_5) - 1))))))), (a_6 = this$.Comments, (b_6 = other.Comments, (length(a_6) === length(b_6)) && fold((acc_6, e_6) => {
2197
- if (acc_6) {
2198
- return e_6;
2199
- }
2200
- else {
2201
- return false;
2202
- }
2203
- }, true, toList(delay(() => map_1((i_7) => equals(item(i_7, a_6), item(i_7, b_6)), rangeDouble(0, 1, length(a_6) - 1))))))), (a_7 = this$.Remarks, (b_7 = other.Remarks, (length(a_7) === length(b_7)) && fold((acc_7, e_7) => {
2204
- if (acc_7) {
2205
- return e_7;
2206
- }
2207
- else {
2208
- return false;
2209
- }
2210
- }, true, toList(delay(() => map_1((i_8) => equals(item(i_8, a_7), item(i_8, b_7)), rangeDouble(0, 1, length(a_7) - 1)))))))]);
2211
- }
2212
- ReferenceEquals(other) {
2213
- const this$ = this;
2214
- return this$ === other;
2215
- }
2216
- toString() {
2217
- const this$ = this;
2218
- const arg = this$.Identifier;
2219
- const arg_1 = this$.Title;
2220
- const arg_2 = this$.Description;
2221
- const arg_3 = this$.SubmissionDate;
2222
- const arg_4 = this$.PublicReleaseDate;
2223
- const arg_5 = this$.OntologySourceReferences;
2224
- const arg_6 = this$.Publications;
2225
- const arg_7 = this$.Contacts;
2226
- const arg_8 = this$.Assays;
2227
- const arg_9 = this$.Studies;
2228
- const arg_10 = this$.RegisteredStudyIdentifiers;
2229
- const arg_11 = this$.Comments;
2230
- const arg_12 = this$.Remarks;
2231
- return toText(printf("ArcInvestigation {\r\n Identifier = %A,\r\n Title = %A,\r\n Description = %A,\r\n SubmissionDate = %A,\r\n PublicReleaseDate = %A,\r\n OntologySourceReferences = %A,\r\n Publications = %A,\r\n Contacts = %A,\r\n Assays = %A,\r\n Studies = %A,\r\n RegisteredStudyIdentifiers = %A,\r\n Comments = %A,\r\n Remarks = %A,\r\n}"))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10)(arg_11)(arg_12);
2232
- }
2233
- Equals(other) {
2234
- let i;
2235
- const this$ = this;
2236
- return (other instanceof ArcInvestigation) && ((i = other, this$.StructurallyEquals(i)));
2237
- }
2238
- GetHashCode() {
2239
- const this$ = this;
2240
- return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.SubmissionDate), boxHashOption(this$.PublicReleaseDate), boxHashSeq(this$.Publications), boxHashSeq(this$.Contacts), boxHashSeq(this$.OntologySourceReferences), boxHashSeq(this$.Assays), boxHashSeq(this$.Studies), boxHashSeq(this$.RegisteredStudyIdentifiers), boxHashSeq(this$.Comments), boxHashSeq(this$.Remarks)]) | 0;
2241
- }
2242
- GetLightHashCode() {
2243
- const this$ = this;
2244
- return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.SubmissionDate), boxHashOption(this$.PublicReleaseDate), boxHashSeq(this$.Publications), boxHashSeq(this$.Contacts), boxHashSeq(this$.OntologySourceReferences), boxHashSeq(this$.RegisteredStudyIdentifiers), boxHashSeq(this$.Comments), boxHashSeq(this$.Remarks)]) | 0;
2245
- }
2246
- }
2247
-
2248
- export function ArcInvestigation_$reflection() {
2249
- return class_type("ARCtrl.ArcInvestigation", undefined, ArcInvestigation);
2250
- }
2251
-
2252
- export function ArcInvestigation_$ctor_Z2ED5C612(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks) {
2253
- return new ArcInvestigation(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks);
2254
- }
2255
-
2256
- export function ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier(assayIdentifier, investigationIdentifier) {
2257
- return `Error. Unable to find assay with identifier '${assayIdentifier}' in investigation ${investigationIdentifier}.`;
2258
- }
2259
-
2260
- export function ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier(studyIdentifer, investigationIdentifier) {
2261
- return `Error. Unable to find study with identifier '${studyIdentifer}' in investigation ${investigationIdentifier}.`;
2262
- }
2263
-