@nfdi4plants/arctrl 2.5.1 → 3.0.0-alpha.2

package/dist/ts/cjs/ts/Json/Study.js

@@ -0,0 +1,347 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ISAJson_decoder = exports.ISAJson_allowedFields = exports.ROCrate_decoder = exports.decoder = void 0;
+exports.Helper_getAssayInformation = Helper_getAssayInformation;
+exports.encoder = encoder;
+exports.encoderCompressed = encoderCompressed;
+exports.decoderCompressed = decoderCompressed;
+exports.ROCrate_genID = ROCrate_genID;
+exports.ROCrate_encoder = ROCrate_encoder;
+exports.ISAJson_encoder = ISAJson_encoder;
+const Collections_js_1 = require("../Core/Helper/Collections.js");
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const List_js_1 = require("@fable-org/fable-library-js/List.js");
+const ArcTypes_js_1 = require("../Core/ArcTypes.js");
+const Encode_js_1 = require("./Encode.js");
+const Publication_js_1 = require("./Publication.js");
+const Person_js_1 = require("./Person.js");
+const OntologyAnnotation_js_1 = require("./OntologyAnnotation.js");
+const ArcTable_js_1 = require("./Table/ArcTable.js");
+const DataMap_js_1 = require("./DataMap/DataMap.js");
+const Comment_js_1 = require("./Comment.js");
+const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
+const Decode_fs_js_1 = require("../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
+const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
+const String_js_1 = require("@fable-org/fable-library-js/String.js");
+const Identifier_js_1 = require("../Core/Helper/Identifier.js");
+const Conversion_js_1 = require("../Core/Conversion.js");
+const Encode_fs_js_1 = require("../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
+const Process_js_1 = require("./Process/Process.js");
+const Assay_js_1 = require("./Assay.js");
+const Data_js_1 = require("./Data.js");
+const ProcessSequence_js_1 = require("../Core/Process/ProcessSequence.js");
+const isa_study_context_js_1 = require("./context/rocrate/isa_study_context.js");
+const Factor_js_1 = require("./Process/Factor.js");
+const MaterialAttribute_js_1 = require("./Process/MaterialAttribute.js");
+const StudyMaterials_js_1 = require("./Process/StudyMaterials.js");
+const Protocol_js_1 = require("./Process/Protocol.js");
+const IDTable_js_1 = require("./IDTable.js");
+const Decode_js_1 = require("./Decode.js");
+/**
+ * Get registered assays or get assays from `assays` if IsSome
+ */
+function Helper_getAssayInformation(assays, study) {
+    if (assays != null) {
+        return (0, Collections_js_1.ResizeArray_map)((assayId) => (0, Option_js_1.defaultArg)((0, List_js_1.tryFind)((a) => (a.Identifier === assayId), (0, Option_js_1.value)(assays)), ArcTypes_js_1.ArcAssay.init(assayId)), study.RegisteredAssayIdentifiers);
+    }
+    else {
+        return study.GetRegisteredAssaysOrIdentifier();
+    }
+}
+function encoder(study) {
+    let value;
+    const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["Identifier", (value = study.Identifier, {
+                Encode(helpers) {
+                    return helpers.encodeString(value);
+                },
+            })], (0, Encode_js_1.tryInclude)("Title", (value_1) => ({
+            Encode(helpers_1) {
+                return helpers_1.encodeString(value_1);
+            },
+        }), study.Title), (0, Encode_js_1.tryInclude)("Description", (value_3) => ({
+            Encode(helpers_2) {
+                return helpers_2.encodeString(value_3);
+            },
+        }), study.Description), (0, Encode_js_1.tryInclude)("SubmissionDate", (value_5) => ({
+            Encode(helpers_3) {
+                return helpers_3.encodeString(value_5);
+            },
+        }), study.SubmissionDate), (0, Encode_js_1.tryInclude)("PublicReleaseDate", (value_7) => ({
+            Encode(helpers_4) {
+                return helpers_4.encodeString(value_7);
+            },
+        }), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("Publications", Publication_js_1.encoder, study.Publications), (0, Encode_js_1.tryIncludeSeq)("Contacts", Person_js_1.encoder, study.Contacts), (0, Encode_js_1.tryIncludeSeq)("StudyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_encoder, study.StudyDesignDescriptors), (0, Encode_js_1.tryIncludeSeq)("Tables", ArcTable_js_1.encoder, study.Tables), (0, Encode_js_1.tryInclude)("DataMap", DataMap_js_1.encoder, study.DataMap), (0, Encode_js_1.tryIncludeSeq)("RegisteredAssayIdentifiers", (value_9) => ({
+            Encode(helpers_5) {
+                return helpers_5.encodeString(value_9);
+            },
+        }), study.RegisteredAssayIdentifiers), (0, Encode_js_1.tryIncludeSeq)("Comments", Comment_js_1.encoder, study.Comments)]));
+    return {
+        Encode(helpers_6) {
+            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
+            return helpers_6.encodeObject(arg);
+        },
+    };
+}
+exports.decoder = (0, Decode_fs_js_1.object)((get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
+    return new ArcTypes_js_1.ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", Decode_fs_js_1.string)), (0, Option_js_1.unwrap)((objectArg_1 = get$.Optional, objectArg_1.Field("Title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_2 = get$.Optional, objectArg_2.Field("Description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_11 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11)))), (0, Option_js_1.unwrap)((arg_13 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13)))), (0, Option_js_1.unwrap)((arg_15 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15)))), (0, Option_js_1.unwrap)((arg_17 = (0, Decode_fs_js_1.resizeArray)(ArcTable_js_1.decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17)))), (0, Option_js_1.unwrap)((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", DataMap_js_1.decoder))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Decode_fs_js_1.string), (objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21)))), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23)))));
+});
+function encoderCompressed(stringTable, oaTable, cellTable, study) {
+    let value;
+    const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["Identifier", (value = study.Identifier, {
+                Encode(helpers) {
+                    return helpers.encodeString(value);
+                },
+            })], (0, Encode_js_1.tryInclude)("Title", (value_1) => ({
+            Encode(helpers_1) {
+                return helpers_1.encodeString(value_1);
+            },
+        }), study.Title), (0, Encode_js_1.tryInclude)("Description", (value_3) => ({
+            Encode(helpers_2) {
+                return helpers_2.encodeString(value_3);
+            },
+        }), study.Description), (0, Encode_js_1.tryInclude)("SubmissionDate", (value_5) => ({
+            Encode(helpers_3) {
+                return helpers_3.encodeString(value_5);
+            },
+        }), study.SubmissionDate), (0, Encode_js_1.tryInclude)("PublicReleaseDate", (value_7) => ({
+            Encode(helpers_4) {
+                return helpers_4.encodeString(value_7);
+            },
+        }), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("Publications", Publication_js_1.encoder, study.Publications), (0, Encode_js_1.tryIncludeSeq)("Contacts", Person_js_1.encoder, study.Contacts), (0, Encode_js_1.tryIncludeSeq)("StudyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_encoder, study.StudyDesignDescriptors), (0, Encode_js_1.tryIncludeSeq)("Tables", (table) => (0, ArcTable_js_1.encoderCompressed)(stringTable, oaTable, cellTable, table), study.Tables), (0, Encode_js_1.tryInclude)("DataMap", (dm) => (0, DataMap_js_1.encoderCompressed)(stringTable, oaTable, cellTable, dm), study.DataMap), (0, Encode_js_1.tryIncludeSeq)("RegisteredAssayIdentifiers", (value_9) => ({
+            Encode(helpers_5) {
+                return helpers_5.encodeString(value_9);
+            },
+        }), study.RegisteredAssayIdentifiers), (0, Encode_js_1.tryIncludeSeq)("Comments", Comment_js_1.encoder, study.Comments)]));
+    return {
+        Encode(helpers_6) {
+            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
+            return helpers_6.encodeObject(arg);
+        },
+    };
+}
+function decoderCompressed(stringTable, oaTable, cellTable) {
+    return (0, Decode_fs_js_1.object)((get$) => {
+        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
+        return new ArcTypes_js_1.ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", Decode_fs_js_1.string)), (0, Option_js_1.unwrap)((objectArg_1 = get$.Optional, objectArg_1.Field("Title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_2 = get$.Optional, objectArg_2.Field("Description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_11 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11)))), (0, Option_js_1.unwrap)((arg_13 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13)))), (0, Option_js_1.unwrap)((arg_15 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15)))), (0, Option_js_1.unwrap)((arg_17 = (0, Decode_fs_js_1.resizeArray)((0, ArcTable_js_1.decoderCompressed)(stringTable, oaTable, cellTable)), (objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17)))), (0, Option_js_1.unwrap)((arg_19 = (0, DataMap_js_1.decoderCompressed)(stringTable, oaTable, cellTable), (objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19)))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Decode_fs_js_1.string), (objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21)))), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23)))));
+    });
+}
+function ROCrate_genID(a) {
+    const matchValue = a.Identifier;
+    if (matchValue === "") {
+        return "#EmptyStudy";
+    }
+    else {
+        return `studies/${(0, String_js_1.replace)(matchValue, " ", "_")}/`;
+    }
+}
+function ROCrate_encoder(assays, s) {
+    let value, value_3, studyName, studyName_1;
+    const fileName = (0, Identifier_js_1.Study_tryFileNameFromIdentifier)(s.Identifier);
+    const processes = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_GetProcesses)(s);
+    const assays_1 = Helper_getAssayInformation(assays, s);
+    const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value = ROCrate_genID(s), {
+                Encode(helpers) {
+                    return helpers.encodeString(value);
+                },
+            })], ["@type", (0, Encode_fs_js_1.list)((0, List_js_1.singleton)({
+                Encode(helpers_1) {
+                    return helpers_1.encodeString("Study");
+                },
+            }))], ["additionalType", {
+                Encode(helpers_2) {
+                    return helpers_2.encodeString("Study");
+                },
+            }], ["identifier", (value_3 = s.Identifier, {
+                Encode(helpers_3) {
+                    return helpers_3.encodeString(value_3);
+                },
+            })], (0, Encode_js_1.tryInclude)("filename", (value_4) => ({
+            Encode(helpers_4) {
+                return helpers_4.encodeString(value_4);
+            },
+        }), fileName), (0, Encode_js_1.tryInclude)("title", (value_6) => ({
+            Encode(helpers_5) {
+                return helpers_5.encodeString(value_6);
+            },
+        }), s.Title), (0, Encode_js_1.tryInclude)("description", (value_8) => ({
+            Encode(helpers_6) {
+                return helpers_6.encodeString(value_8);
+            },
+        }), s.Description), (0, Encode_js_1.tryIncludeSeq)("studyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_encoderDefinedTerm, s.StudyDesignDescriptors), (0, Encode_js_1.tryInclude)("submissionDate", (value_10) => ({
+            Encode(helpers_7) {
+                return helpers_7.encodeString(value_10);
+            },
+        }), s.SubmissionDate), (0, Encode_js_1.tryInclude)("publicReleaseDate", (value_12) => ({
+            Encode(helpers_8) {
+                return helpers_8.encodeString(value_12);
+            },
+        }), s.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("publications", Publication_js_1.ROCrate_encoder, s.Publications), (0, Encode_js_1.tryIncludeSeq)("people", Person_js_1.ROCrate_encoder, s.Contacts), (0, Encode_js_1.tryIncludeList)("processSequence", (studyName = s.Identifier, (oa_3) => (0, Process_js_1.ROCrate_encoder)(studyName, undefined, oa_3)), processes), (0, Encode_js_1.tryIncludeSeq)("assays", (studyName_1 = s.Identifier, (a_1) => (0, Assay_js_1.ROCrate_encoder)(studyName_1, a_1)), assays_1), (0, Encode_js_1.tryIncludeList)("dataFiles", Data_js_1.ROCrate_encoder, (0, ProcessSequence_js_1.getData)(processes)), (0, Encode_js_1.tryIncludeSeq)("comments", Comment_js_1.ROCrate_encoder, s.Comments), ["@context", isa_study_context_js_1.context_jsonvalue]]));
+    return {
+        Encode(helpers_9) {
+            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
+            return helpers_9.encodeObject(arg);
+        },
+    };
+}
+exports.ROCrate_decoder = (0, Decode_fs_js_1.object)((get$) => {
+    let objectArg, arg_6, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_16, objectArg_7, arg_18, objectArg_8, arg_20, objectArg_9, arg_22, objectArg_10;
+    const identifier = (0, Option_js_1.defaultArg)((0, Option_js_1.bind)(Identifier_js_1.Study_tryIdentifierFromFileName, (objectArg = get$.Optional, objectArg.Field("filename", Decode_fs_js_1.string))), (0, Identifier_js_1.createMissingIdentifier)());
+    let assays;
+    const arg_3 = (0, Decode_fs_js_1.list)(Assay_js_1.ROCrate_decoder);
+    const objectArg_1 = get$.Optional;
+    assays = objectArg_1.Field("assays", arg_3);
+    const assayIdentifiers = (0, Option_js_1.map)((arg_4) => {
+        const collection = (0, List_js_1.map)((a) => a.Identifier, arg_4);
+        return Array.from(collection);
+    }, assays);
+    const tables = (0, Option_js_1.map)((ps) => (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D)(ps).Tables, (arg_6 = (0, Decode_fs_js_1.list)(Process_js_1.ROCrate_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_6))));
+    return [new ArcTypes_js_1.ArcStudy(identifier, (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_16 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.ROCrate_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_16)))), (0, Option_js_1.unwrap)((arg_18 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.ROCrate_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_18)))), (0, Option_js_1.unwrap)((arg_20 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_decoderDefinedTerm), (objectArg_9 = get$.Optional, objectArg_9.Field("studyDesignDescriptors", arg_20)))), (0, Option_js_1.unwrap)(tables), undefined, (0, Option_js_1.unwrap)(assayIdentifiers), (0, Option_js_1.unwrap)((arg_22 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.ROCrate_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_22))))), (0, Option_js_1.defaultArg)(assays, (0, List_js_1.empty)())];
+});
+/**
+ * If assays.IsSome then try to get registered assays from external list, otherwise try to access investigation or create empty defaults.
+ */
+function ISAJson_encoder(idMap, assays, s) {
+    const f = (s_1) => {
+        let studyName, value_6, value_8, studyName_1, studyName_2;
+        const study = s_1.Copy(true);
+        const fileName = (0, Identifier_js_1.Study_fileNameFromIdentifier)(study.Identifier);
+        let assays_1;
+        const n = [];
+        let enumerator = (0, Util_js_1.getEnumerator)(Helper_getAssayInformation(assays, study));
+        try {
+            while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+                const a = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                const assay = a.Copy();
+                let enumerator_1 = (0, Util_js_1.getEnumerator)(assay.Performers);
+                try {
+                    while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
+                        const person_1 = (0, Conversion_js_1.Person_setSourceAssayComment)(enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"](), assay.Identifier);
+                        void (study.Contacts.push(person_1));
+                    }
+                }
+                finally {
+                    (0, Util_js_1.disposeSafe)(enumerator_1);
+                }
+                assay.Performers = [];
+                void (n.push(assay));
+            }
+        }
+        finally {
+            (0, Util_js_1.disposeSafe)(enumerator);
+        }
+        assays_1 = n;
+        const processes = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_GetProcesses)(study);
+        const encodedUnits = (0, Encode_js_1.tryIncludeList)("unitCategories", (oa) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa), (0, ProcessSequence_js_1.getUnits)(processes));
+        const encodedFactors = (0, Encode_js_1.tryIncludeList)("factors", (value_1) => (0, Factor_js_1.encoder)(idMap, value_1), (0, ProcessSequence_js_1.getFactors)(processes));
+        const encodedCharacteristics = (0, Encode_js_1.tryIncludeList)("characteristicCategories", (value_3) => (0, MaterialAttribute_js_1.encoder)(idMap, value_3), (0, ProcessSequence_js_1.getCharacteristics)(processes));
+        const encodedMaterials = (0, Encode_js_1.tryInclude)("materials", (ps) => (0, StudyMaterials_js_1.encoder)(idMap, ps), (0, Collections_js_1.Option_fromValueWithDefault)((0, List_js_1.empty)(), processes));
+        let encodedProtocols;
+        const value_5 = (0, ProcessSequence_js_1.getProtocols)(processes);
+        encodedProtocols = (0, Encode_js_1.tryIncludeList)("protocols", (studyName = s_1.Identifier, (oa_1) => (0, Protocol_js_1.ISAJson_encoder)(studyName, undefined, undefined, idMap, oa_1)), value_5);
+        const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value_6 = ROCrate_genID(study), {
+                    Encode(helpers) {
+                        return helpers.encodeString(value_6);
+                    },
+                })], ["filename", {
+                    Encode(helpers_1) {
+                        return helpers_1.encodeString(fileName);
+                    },
+                }], ["identifier", (value_8 = study.Identifier, {
+                    Encode(helpers_2) {
+                        return helpers_2.encodeString(value_8);
+                    },
+                })], (0, Encode_js_1.tryInclude)("title", (value_9) => ({
+                Encode(helpers_3) {
+                    return helpers_3.encodeString(value_9);
+                },
+            }), study.Title), (0, Encode_js_1.tryInclude)("description", (value_11) => ({
+                Encode(helpers_4) {
+                    return helpers_4.encodeString(value_11);
+                },
+            }), study.Description), (0, Encode_js_1.tryInclude)("submissionDate", (value_13) => ({
+                Encode(helpers_5) {
+                    return helpers_5.encodeString(value_13);
+                },
+            }), study.SubmissionDate), (0, Encode_js_1.tryInclude)("publicReleaseDate", (value_15) => ({
+                Encode(helpers_6) {
+                    return helpers_6.encodeString(value_15);
+                },
+            }), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("publications", (oa_2) => (0, Publication_js_1.ISAJson_encoder)(idMap, oa_2), study.Publications), (0, Encode_js_1.tryIncludeSeq)("people", (person_2) => (0, Person_js_1.ISAJson_encoder)(idMap, person_2), study.Contacts), (0, Encode_js_1.tryIncludeSeq)("studyDesignDescriptors", (oa_3) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa_3), study.StudyDesignDescriptors), encodedProtocols, encodedMaterials, (0, Encode_js_1.tryIncludeList)("processSequence", (studyName_1 = s_1.Identifier, (oa_4) => (0, Process_js_1.ISAJson_encoder)(studyName_1, undefined, idMap, oa_4)), processes), (0, Encode_js_1.tryIncludeSeq)("assays", (studyName_2 = s_1.Identifier, (a_2) => (0, Assay_js_1.ISAJson_encoder)(studyName_2, idMap, a_2)), assays_1), encodedFactors, encodedCharacteristics, encodedUnits, (0, Encode_js_1.tryIncludeSeq)("comments", (comment) => (0, Comment_js_1.ISAJson_encoder)(idMap, comment), study.Comments)]));
+        return {
+            Encode(helpers_7) {
+                const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);
+                return helpers_7.encodeObject(arg);
+            },
+        };
+    };
+    if (idMap != null) {
+        return (0, IDTable_js_1.encode)(ROCrate_genID, f, s, (0, Option_js_1.value)(idMap));
+    }
+    else {
+        return f(s);
+    }
+}
+exports.ISAJson_allowedFields = (0, List_js_1.ofArray)(["@id", "filename", "identifier", "title", "description", "submissionDate", "publicReleaseDate", "publications", "people", "studyDesignDescriptors", "protocols", "materials", "assays", "factors", "characteristicCategories", "unitCategories", "processSequence", "comments", "@type", "@context"]);
+exports.ISAJson_decoder = (0, Decode_js_1.Decode_objectNoAdditionalProperties)(exports.ISAJson_allowedFields, (get$) => {
+    let objectArg, arg_5, objectArg_2, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_21, objectArg_9, arg_23, objectArg_10, arg_25, objectArg_11;
+    const identifier = (0, Option_js_1.defaultArgWith)((objectArg = get$.Optional, objectArg.Field("identifier", Decode_fs_js_1.string)), () => {
+        let objectArg_1;
+        return (0, Option_js_1.defaultArg)((0, Option_js_1.bind)(Identifier_js_1.Study_tryIdentifierFromFileName, (objectArg_1 = get$.Optional, objectArg_1.Field("filename", Decode_fs_js_1.string))), (0, Identifier_js_1.createMissingIdentifier)());
+    });
+    const tables = (0, Option_js_1.map)((arg_6) => {
+        const a = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D)(arg_6);
+        return a.Tables;
+    }, (arg_5 = (0, Decode_fs_js_1.list)(Process_js_1.ISAJson_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_5))));
+    let assays;
+    const arg_8 = (0, Decode_fs_js_1.list)(Assay_js_1.ISAJson_decoder);
+    const objectArg_3 = get$.Optional;
+    assays = objectArg_3.Field("assays", arg_8);
+    let personsRaw;
+    const arg_10 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.ISAJson_decoder);
+    const objectArg_4 = get$.Optional;
+    personsRaw = objectArg_4.Field("people", arg_10);
+    const persons = [];
+    if (personsRaw != null) {
+        let enumerator = (0, Util_js_1.getEnumerator)((0, Option_js_1.value)(personsRaw));
+        try {
+            while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+                const person = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                const sourceAssays = (0, Conversion_js_1.Person_getSourceAssayIdentifiersFromComments)(person);
+                const enumerator_1 = (0, Util_js_1.getEnumerator)(sourceAssays);
+                try {
+                    while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
+                        const assayIdentifier = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                        const enumerator_2 = (0, Util_js_1.getEnumerator)((0, Option_js_1.value)(assays));
+                        try {
+                            while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
+                                const assay = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                                if (assay.Identifier === assayIdentifier) {
+                                    void (assay.Performers.push(person));
+                                }
+                            }
+                        }
+                        finally {
+                            (0, Util_js_1.disposeSafe)(enumerator_2);
+                        }
+                    }
+                }
+                finally {
+                    (0, Util_js_1.disposeSafe)(enumerator_1);
+                }
+                person.Comments = (0, Conversion_js_1.Person_removeSourceAssayComments)(person);
+                if ((0, Seq_js_1.isEmpty)(sourceAssays)) {
+                    void (persons.push(person));
+                }
+            }
+        }
+        finally {
+            (0, Util_js_1.disposeSafe)(enumerator);
+        }
+    }
+    const assayIdentifiers = (0, Option_js_1.map)((arg_11) => {
+        const collection = (0, List_js_1.map)((a_1) => a_1.Identifier, arg_11);
+        return Array.from(collection);
+    }, assays);
+    return [new ArcTypes_js_1.ArcStudy(identifier, (0, Option_js_1.unwrap)((objectArg_5 = get$.Optional, objectArg_5.Field("title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_6 = get$.Optional, objectArg_6.Field("description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_7 = get$.Optional, objectArg_7.Field("submissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_8 = get$.Optional, objectArg_8.Field("publicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.ISAJson_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("publications", arg_21)))), (0, Option_js_1.unwrap)((persons.length === 0) ? undefined : persons), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("studyDesignDescriptors", arg_23)))), (0, Option_js_1.unwrap)(tables), undefined, (0, Option_js_1.unwrap)(assayIdentifiers), (0, Option_js_1.unwrap)((arg_25 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.ISAJson_decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_25))))), (0, Option_js_1.defaultArg)(assays, (0, List_js_1.empty)())];
+});

package/dist/ts/cjs/ts/Json/Table/ArcTable.js

@@ -0,0 +1,230 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.decoder = void 0;
+exports.encoder = encoder;
+exports.encoderCompressedColumn = encoderCompressedColumn;
+exports.decoderCompressedColumn = decoderCompressedColumn;
+exports.arrayi = arrayi;
+exports.encoderCompressed = encoderCompressed;
+exports.decoderCompressed = decoderCompressed;
+const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
+const Types_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js");
+const Encode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
+const CompositeHeader_js_1 = require("./CompositeHeader.js");
+const CompositeCell_js_1 = require("./CompositeCell.js");
+const Map_js_1 = require("@fable-org/fable-library-js/Map.js");
+const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
+const ArcTable_js_1 = require("../../Core/Table/ArcTable.js");
+const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const List_js_1 = require("@fable-org/fable-library-js/List.js");
+const MutableMap_js_1 = require("@fable-org/fable-library-js/MutableMap.js");
+const CellTable_js_1 = require("./CellTable.js");
+const MapUtil_js_1 = require("@fable-org/fable-library-js/MapUtil.js");
+const Range_js_1 = require("@fable-org/fable-library-js/Range.js");
+const Array_js_1 = require("@fable-org/fable-library-js/Array.js");
+const Result_js_1 = require("@fable-org/fable-library-js/Result.js");
+const StringTable_js_1 = require("../StringTable.js");
+function encoder(table) {
+    const values = (0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => {
+        let value_4;
+        return (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["name", (value_4 = table.Name, {
+                Encode(helpers_2) {
+                    return helpers_2.encodeString(value_4);
+                },
+            })]), (0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((table.Headers.length !== 0) ? (0, Seq_js_1.singleton)(["header", (0, Encode_fs_js_1.list)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)(CompositeHeader_js_1.encoder, table.Headers))))]) : (0, Seq_js_1.empty)(), (0, Seq_js_1.delay)(() => ((table.Values.size !== 0) ? (0, Seq_js_1.singleton)(["values", (0, Encode_fs_js_1.map)((tupledArg) => (0, Encode_fs_js_1.tuple2)((value) => ({
+                Encode(helpers) {
+                    return helpers.encodeSignedIntegralNumber(value);
+                },
+            }), (value_2) => ({
+                Encode(helpers_1) {
+                    return helpers_1.encodeSignedIntegralNumber(value_2);
+                },
+            }), tupledArg[0], tupledArg[1]), CompositeCell_js_1.encoder, (0, Map_js_1.ofSeq)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.collect)((matchValue) => {
+                const activePatternResult = matchValue;
+                return (0, Seq_js_1.singleton)([activePatternResult[0], activePatternResult[1]]);
+            }, table.Values))), {
+                Compare: Util_js_1.compareArrays,
+            }))]) : (0, Seq_js_1.empty)())))));
+    }));
+    return {
+        Encode(helpers_3) {
+            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_3)], values);
+            return helpers_3.encodeObject(arg);
+        },
+    };
+}
+exports.decoder = (0, Decode_fs_js_1.object)((get$) => {
+    let arg_1, objectArg, arg_3, objectArg_1, objectArg_2;
+    let decodedHeader;
+    const collection = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.list)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("header", arg_1))), (0, List_js_1.empty)());
+    decodedHeader = Array.from(collection);
+    const decodedValues = new MutableMap_js_1.Dictionary((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_fs_js_1.map$0027)((0, Decode_fs_js_1.tuple2)(Decode_fs_js_1.int, Decode_fs_js_1.int), CompositeCell_js_1.decoder), (objectArg_1 = get$.Optional, objectArg_1.Field("values", arg_3))), (0, Map_js_1.empty)({
+        Compare: Util_js_1.compareArrays,
+    })), {
+        Equals: Util_js_1.equalArrays,
+        GetHashCode: Util_js_1.arrayHash,
+    });
+    return ArcTable_js_1.ArcTable.create((objectArg_2 = get$.Required, objectArg_2.Field("name", Decode_fs_js_1.string)), decodedHeader, decodedValues);
+});
+function encoderCompressedColumn(columnIndex, rowCount, cellTable, table) {
+    if (table.Headers[columnIndex].IsIOType ? true : (rowCount < 100)) {
+        const values = (0, Seq_js_1.toArray)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)((r) => (0, CellTable_js_1.encodeCell)(cellTable, (0, MapUtil_js_1.getItemFromDict)(table.Values, [columnIndex, r])), (0, Range_js_1.rangeDouble)(0, 1, rowCount - 1))));
+        return {
+            Encode(helpers) {
+                const arg = (0, Array_js_1.map)((v) => v.Encode(helpers), values);
+                return helpers.encodeArray(arg);
+            },
+        };
+    }
+    else {
+        let current = (0, MapUtil_js_1.getItemFromDict)(table.Values, [columnIndex, 0]);
+        let from = 0;
+        const values_3 = (0, Seq_js_1.toArray)((0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((0, Seq_js_1.collect)((i) => {
+            let values_1, value, value_1;
+            const next = (0, MapUtil_js_1.getItemFromDict)(table.Values, [columnIndex, i]);
+            return !(0, Util_js_1.equals)(next, current) ? (0, Seq_js_1.append)((0, Seq_js_1.singleton)((values_1 = [["f", (value = (from | 0), {
+                        Encode(helpers_1) {
+                            return helpers_1.encodeSignedIntegralNumber(value);
+                        },
+                    })], ["t", (value_1 = ((i - 1) | 0), {
+                        Encode(helpers_2) {
+                            return helpers_2.encodeSignedIntegralNumber(value_1);
+                        },
+                    })], ["v", (0, CellTable_js_1.encodeCell)(cellTable, current)]], {
+                Encode(helpers_3) {
+                    const arg_1 = (0, Seq_js_1.map)((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_3)], values_1);
+                    return helpers_3.encodeObject(arg_1);
+                },
+            })), (0, Seq_js_1.delay)(() => {
+                current = next;
+                from = (i | 0);
+                return (0, Seq_js_1.empty)();
+            })) : (0, Seq_js_1.empty)();
+        }, (0, Range_js_1.rangeDouble)(1, 1, rowCount - 1)), (0, Seq_js_1.delay)(() => {
+            let values_2, value_2, value_3;
+            return (0, Seq_js_1.singleton)((values_2 = [["f", (value_2 = (from | 0), {
+                        Encode(helpers_4) {
+                            return helpers_4.encodeSignedIntegralNumber(value_2);
+                        },
+                    })], ["t", (value_3 = ((rowCount - 1) | 0), {
+                        Encode(helpers_5) {
+                            return helpers_5.encodeSignedIntegralNumber(value_3);
+                        },
+                    })], ["v", (0, CellTable_js_1.encodeCell)(cellTable, current)]], {
+                Encode(helpers_6) {
+                    const arg_2 = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_2);
+                    return helpers_6.encodeObject(arg_2);
+                },
+            }));
+        }))));
+        return {
+            Encode(helpers_7) {
+                const arg_3 = (0, Array_js_1.map)((v_3) => v_3.Encode(helpers_7), values_3);
+                return helpers_7.encodeArray(arg_3);
+            },
+        };
+    }
+}
+function decoderCompressedColumn(cellTable, table, columnIndex) {
+    return {
+        Decode(helper, column) {
+            const matchValue = (0, Decode_fs_js_1.array)((0, CellTable_js_1.decodeCell)(cellTable)).Decode(helper, column);
+            if (matchValue.tag === /* Error */ 1) {
+                const err = matchValue.fields[0];
+                const rangeDecoder = (0, Decode_fs_js_1.object)((get$) => {
+                    let from;
+                    const objectArg = get$.Required;
+                    from = objectArg.Field("f", Decode_fs_js_1.int);
+                    let to_;
+                    const objectArg_1 = get$.Required;
+                    to_ = objectArg_1.Field("t", Decode_fs_js_1.int);
+                    let value;
+                    const arg_5 = (0, CellTable_js_1.decodeCell)(cellTable);
+                    const objectArg_2 = get$.Required;
+                    value = objectArg_2.Field("v", arg_5);
+                    for (let i = from; i <= to_; i++) {
+                        (0, MapUtil_js_1.addToDict)(table.Values, [columnIndex, i], value);
+                    }
+                });
+                const matchValue_1 = (0, Decode_fs_js_1.array)(rangeDecoder).Decode(helper, column);
+                return (matchValue_1.tag === /* Error */ 1) ? (0, Result_js_1.FSharpResult$2_Error)(matchValue_1.fields[0]) : (0, Result_js_1.FSharpResult$2_Ok)(undefined);
+            }
+            else {
+                (0, Array_js_1.iterateIndexed)((r, cell) => {
+                    (0, MapUtil_js_1.addToDict)(table.Values, [columnIndex, r], cell);
+                }, matchValue.fields[0]);
+                return (0, Result_js_1.FSharpResult$2_Ok)(undefined);
+            }
+        },
+    };
+}
+function arrayi(decoderi) {
+    return {
+        Decode(helpers, value) {
+            if (helpers.isArray(value)) {
+                let i = -1;
+                const tokens = helpers.asArray(value);
+                return (0, Array_js_1.fold)((acc, value_1) => {
+                    let tupledArg;
+                    i = ((i + 1) | 0);
+                    if (acc.tag === /* Ok */ 0) {
+                        const acc_1 = acc.fields[0];
+                        const matchValue = decoderi(i).Decode(helpers, value_1);
+                        if (matchValue.tag === /* Ok */ 0) {
+                            const value_2 = matchValue.fields[0];
+                            (0, Array_js_1.setItem)(acc_1, i, value_2);
+                            return (0, Result_js_1.FSharpResult$2_Ok)(acc_1);
+                        }
+                        else {
+                            return (0, Result_js_1.FSharpResult$2_Error)((tupledArg = matchValue.fields[0], (0, Decode_fs_js_1.Helpers_prependPath)((".[" + (0, Util_js_1.int32ToString)(i)) + "]", tupledArg[0], tupledArg[1])));
+                        }
+                    }
+                    else {
+                        return acc;
+                    }
+                }, (0, Result_js_1.FSharpResult$2_Ok)((0, Array_js_1.fill)(new Array(tokens.length), 0, tokens.length, null)), tokens);
+            }
+            else {
+                return (0, Result_js_1.FSharpResult$2_Error)(["", (0, Types_fs_js_1.ErrorReason$1_BadPrimitive)("an array", value)]);
+            }
+        },
+    };
+}
+function encoderCompressed(stringTable, oaTable, cellTable, table) {
+    const values_1 = (0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["n", (0, StringTable_js_1.encodeString)(stringTable, table.Name)]), (0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((table.Headers.length !== 0) ? (0, Seq_js_1.singleton)(["h", (0, Encode_fs_js_1.list)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)(CompositeHeader_js_1.encoder, table.Headers))))]) : (0, Seq_js_1.empty)(), (0, Seq_js_1.delay)(() => {
+        if (table.Values.size !== 0) {
+            const rowCount = table.RowCount | 0;
+            const columns = (0, Seq_js_1.toArray)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)((c) => encoderCompressedColumn(c, rowCount, cellTable, table), (0, Range_js_1.rangeDouble)(0, 1, table.ColumnCount - 1))));
+            return (0, Seq_js_1.singleton)(["c", {
+                    Encode(helpers) {
+                        const arg = (0, Array_js_1.map)((v) => v.Encode(helpers), columns);
+                        return helpers.encodeArray(arg);
+                    },
+                }]);
+        }
+        else {
+            return (0, Seq_js_1.empty)();
+        }
+    }))))));
+    return {
+        Encode(helpers_1) {
+            const arg_1 = (0, Seq_js_1.map)((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_1)], values_1);
+            return helpers_1.encodeObject(arg_1);
+        },
+    };
+}
+function decoderCompressed(stringTable, oaTable, cellTable) {
+    return (0, Decode_fs_js_1.object)((get$) => {
+        let arg_1, objectArg, arg_3, objectArg_1, arg_5, objectArg_2;
+        let decodedHeader;
+        const collection = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.list)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("h", arg_1))), (0, List_js_1.empty)());
+        decodedHeader = Array.from(collection);
+        const table = ArcTable_js_1.ArcTable.create((arg_3 = (0, StringTable_js_1.decodeString)(stringTable), (objectArg_1 = get$.Required, objectArg_1.Field("n", arg_3))), decodedHeader, new MutableMap_js_1.Dictionary([], {
+            Equals: Util_js_1.equalArrays,
+            GetHashCode: Util_js_1.arrayHash,
+        }));
+        (arg_5 = arrayi((columnIndex) => decoderCompressedColumn(cellTable, table, columnIndex)), (objectArg_2 = get$.Optional, objectArg_2.Field("c", arg_5)));
+        return table;
+    });
+}

package/dist/ts/cjs/ts/Json/Table/CellTable.js

@@ -0,0 +1,58 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.arrayFromMap = arrayFromMap;
+exports.encoder = encoder;
+exports.decoder = decoder;
+exports.encodeCell = encodeCell;
+exports.decodeCell = decodeCell;
+const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
+const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
+const Array_js_1 = require("@fable-org/fable-library-js/Array.js");
+const CompositeCell_js_1 = require("./CompositeCell.js");
+const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
+const Collections_js_1 = require("../../Core/Helper/Collections.js");
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const MapUtil_js_1 = require("@fable-org/fable-library-js/MapUtil.js");
+function arrayFromMap(otm) {
+    return (0, Seq_js_1.toArray)((0, Seq_js_1.map)((kv_1) => kv_1[0], (0, Seq_js_1.sortBy)((kv) => kv[1], otm, {
+        Compare: Util_js_1.comparePrimitives,
+    })));
+}
+function encoder(stringTable, oaTable, ot) {
+    const values = (0, Array_js_1.map)((cc) => (0, CompositeCell_js_1.encoderCompressed)(stringTable, oaTable, cc), ot);
+    return {
+        Encode(helpers) {
+            const arg = (0, Array_js_1.map)((v) => v.Encode(helpers), values);
+            return helpers.encodeArray(arg);
+        },
+    };
+}
+function decoder(stringTable, oaTable) {
+    return (0, Decode_fs_js_1.array)((0, CompositeCell_js_1.decoderCompressed)(stringTable, oaTable));
+}
+function encodeCell(otm, cc) {
+    const matchValue = (0, Collections_js_1.Dictionary_tryFind)(cc, otm);
+    if (matchValue == null) {
+        const i_1 = otm.size | 0;
+        (0, MapUtil_js_1.addToDict)(otm, cc, i_1);
+        return {
+            Encode(helpers_1) {
+                return helpers_1.encodeSignedIntegralNumber(i_1);
+            },
+        };
+    }
+    else {
+        const i = (0, Option_js_1.value)(matchValue) | 0;
+        return {
+            Encode(helpers) {
+                return helpers.encodeSignedIntegralNumber(i);
+            },
+        };
+    }
+}
+function decodeCell(ot) {
+    return (0, Decode_fs_js_1.object)((get$) => {
+        const i = get$.Required.Raw(Decode_fs_js_1.int) | 0;
+        return (0, Array_js_1.item)(i, ot).Copy();
+    });
+}