@nfdi4plants/arctrl 2.5.1 → 3.0.0-alpha.2

package/dist/ts/types/ts/Core/DataMap.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/types/ts/Core/Helper/Collections.d.ts

@@ -0,0 +1,50 @@
+import { IMap } from "@fable-org/fable-library-js/Util.js";
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { FSharpList } from "@fable-org/fable-library-js/List.js";
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+/**
+ * If the value matches the default, a None is returned, else a Some is returned
+ */
+export declare function Option_fromValueWithDefault<$a>(d: $a, v: $a): Option<$a>;
+/**
+ * Applies the function f on the value of the option if it exists, else applies it on the default value. If the result value matches the default, a None is returned
+ */
+export declare function Option_mapDefault<T>(d: T, f: ((arg0: T) => T), o: Option<T>): Option<T>;
+/**
+ * Applies the function f on the value of the option if it exists, else returns the default value.
+ */
+export declare function Option_mapOrDefault<T, U>(d: Option<T>, f: ((arg0: U) => T), o: Option<U>): Option<T>;
+/**
+ * If the value matches the default, a None is returned, else a Some is returned
+ */
+export declare function Option_fromSeq<T extends Iterable<$a>, $a>(v: T): Option<T>;
+export declare function List_tryPickAndRemove<T, U>(f: ((arg0: T) => Option<U>), lst: FSharpList<T>): [Option<U>, FSharpList<T>];
+export declare function Dictionary_addOrUpdate<Key, T>(key: Key, value: T, dict: IMap<Key, T>): void;
+export declare function Dictionary_ofSeq<Key, T>(s: Iterable<[Key, T]>): IMap<Key, T>;
+export declare function Dictionary_tryFind<Key, T>(key: Key, dict: IMap<Key, T>): Option<T>;
+export declare function Dictionary_ofSeqWithMerge<T, Key>(merge: ((arg0: T, arg1: T) => T), s: Iterable<[Key, T]>): IMap<Key, T>;
+export declare function ResizeArray_create<T>(i: int32, v: T): T[];
+export declare function ResizeArray_singleton<T>(a: T): T[];
+export declare function ResizeArray_map<$a, $b>(f: ((arg0: $a) => $b), a: $a[]): $b[];
+export declare function ResizeArray_choose<$a, $b>(f: ((arg0: $a) => Option<$b>), a: $a[]): $b[];
+export declare function ResizeArray_filter<$a>(f: ((arg0: $a) => boolean), a: $a[]): $a[];
+export declare function ResizeArray_fold<$a, $b>(f: ((arg0: $a, arg1: $b) => $a), s: $a, a: $b[]): $a;
+export declare function ResizeArray_foldBack<$a, $b>(f: ((arg0: $a, arg1: $b) => $b), a: $a[], s: $b): $b;
+export declare function ResizeArray_iter<$a>(f: ((arg0: $a) => void), a: $a[]): void;
+export declare function ResizeArray_reduce<$a>(f: ((arg0: $a, arg1: $a) => $a), a: $a[]): $a;
+export declare function ResizeArray_collect<$a, $b extends Iterable<$c>, $c>(f: ((arg0: $a) => $b), a: $a[]): $c[];
+export declare function ResizeArray_distinct<$a>(a: $a[]): $a[];
+export declare function ResizeArray_isEmpty<$a>(a: $a[]): boolean;
+/**
+ * Immutable append
+ */
+export declare function ResizeArray_append<$a>(a: $a[], b: $a[]): $a[];
+/**
+ * append a single element
+ */
+export declare function ResizeArray_appendSingleton<T>(b: T, a: T[]): T[];
+export declare function ResizeArray_groupBy<T, a>(f: ((arg0: T) => a), a: T[]): [a, T[]][];
+export declare function ResizeArray_tryPick<T, $a>(f: ((arg0: T) => Option<$a>), a: T[]): Option<$a>;
+export declare function ResizeArray_zip<T, U>(a: T[], b: U[]): [T, U][];
+export declare function ResizeArray_tryFind<T>(f: ((arg0: T) => boolean), a: T[]): Option<T>;
+//# sourceMappingURL=Collections.d.ts.map

package/dist/ts/types/ts/Core/Helper/Collections.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/types/ts/Core/Helper/HashCodes.d.ts

@@ -0,0 +1,9 @@
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+import { Option } from "@fable-org/fable-library-js/Option.js";
+export declare function mergeHashes(hash1: int32, hash2: int32): int32;
+export declare function hashDateTime(dt: Date): int32;
+export declare function hash<$a>(obj: $a): int32;
+export declare function boxHashOption<a>(a: Option<a>): any;
+export declare function boxHashArray<a>(a: a[]): any;
+export declare function boxHashSeq<a>(a: Iterable<a>): any;
+//# sourceMappingURL=HashCodes.d.ts.map

package/dist/ts/types/ts/Core/Helper/HashCodes.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"HashCodes.d.ts","sourceRoot":"","sources":["../../../../../../src/ARCtrl/ts/Core/Helper/HashCodes.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAG7D,OAAO,EAAE,MAAM,EAAoB,MAAM,uCAAuC,CAAC;AAIjF,wBAAgB,WAAW,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAG,KAAK,CAE7D;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,IAAI,GAAG,KAAK,CAS5C;AAED,wBAAgB,IAAI,CAAC,EAAE,EAAE,GAAG,EAAE,EAAE,GAAG,KAAK,CAGvC;AAED,wBAAgB,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,CAGlD;AAED,wBAAgB,YAAY,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,GAAG,CAE3C;AAED,wBAAgB,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,CAEjD"}

package/dist/ts/types/ts/Core/Helper/Identifier.d.ts

@@ -0,0 +1,119 @@
+import { Option } from "@fable-org/fable-library-js/Option.js";
+export declare function tryCheckValidCharacters(identifier: string): boolean;
+export declare function checkValidCharacters(identifier: string): void;
+export declare function createMissingIdentifier(): string;
+export declare function isMissingIdentifier(str: string): boolean;
+export declare function removeMissingIdentifier(str: string): string;
+/**
+ * On read-in the FileName can be any combination of "assays" (assay folder name), assayIdentifier and "isa.assay.xlsx" (the actual file name).
+ *
+ * This functions extracts assayIdentifier from any of these combinations and returns it.
+ */
+export declare function Assay_identifierFromFileName(fileName: string): string;
+/**
+ * On read-in the FileName can be any combination of "assays" (assay folder name), assayIdentifier and "isa.assay.xlsx" (the actual file name).
+ *
+ * This functions extracts assayIdentifier from any of these combinations and returns it.
+ */
+export declare function Assay_tryIdentifierFromFileName(fileName: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.assay.xlsx`.
+ */
+export declare function Assay_fileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.assay.xlsx`.
+ */
+export declare function Assay_tryFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.datamap.xlsx`.
+ */
+export declare function Assay_datamapFileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.datamap.xlsx`.
+ */
+export declare function Assay_tryDatamapFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On read-in the FileName can be any combination of "studies" (study folder name), studyIdentifier and "isa.study.xlsx" (the actual file name).
+ *
+ * This functions extracts studyIdentifier from any of these combinations and returns it.
+ */
+export declare function Study_identifierFromFileName(fileName: string): string;
+/**
+ * On read-in the FileName can be any combination of "studies" (study folder name), studyIdentifier and "isa.study.xlsx" (the actual file name).
+ *
+ * This functions extracts studyIdentifier from any of these combinations and returns it.
+ */
+export declare function Study_tryIdentifierFromFileName(fileName: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.study.xlsx`.
+ */
+export declare function Study_fileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.study.xlsx`.
+ */
+export declare function Study_tryFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.investigation.xlsx`.
+ */
+export declare function Study_datamapFileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.investigation.xlsx`.
+ */
+export declare function Study_tryDatamapFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On read-in the FileName can be any combination of "workflows" (workflow folder name), workflowIdentifier and "isa.workflow.xlsx" (the actual file name).
+ *
+ * This functions extracts workflowIdentifier from any of these combinations and returns it.
+ */
+export declare function Workflow_identifierFromFileName(fileName: string): string;
+/**
+ * On read-in the FileName can be any combination of "workflows" (workflow folder name), workflowIdentifier and "isa.workflow.xlsx" (the actual file name).
+ *
+ * This functions extracts workflowIdentifier from any of these combinations and returns it.
+ */
+export declare function Workflow_tryIdentifierFromFileName(fileName: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.workflow.xlsx`.
+ */
+export declare function Workflow_fileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.workflow.xlsx`.
+ */
+export declare function Workflow_tryFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.datamap.xlsx`.
+ */
+export declare function Workflow_datamapFileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.datamap.xlsx`.
+ */
+export declare function Workflow_tryDatamapFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On read-in the FileName can be any combination of "runs" (run folder name), runIdentifier and "isa.run.xlsx" (the actual file name).
+ *
+ * This functions extracts runIdentifier from any of these combinations and returns it.
+ */
+export declare function Run_identifierFromFileName(fileName: string): string;
+/**
+ * On read-in the FileName can be any combination of "runs" (run folder name), runIdentifier and "isa.run.xlsx" (the actual file name).
+ *
+ * This functions extracts runIdentifier from any of these combinations and returns it.
+ */
+export declare function Run_tryIdentifierFromFileName(fileName: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.run.xlsx`.
+ */
+export declare function Run_fileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.run.xlsx`.
+ */
+export declare function Run_tryFileNameFromIdentifier(identifier: string): Option<string>;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.datamap.xlsx`.
+ */
+export declare function Run_datamapFileNameFromIdentifier(identifier: string): string;
+/**
+ * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.datamap.xlsx`.
+ */
+export declare function Run_tryDatamapFileNameFromIdentifier(identifier: string): Option<string>;
+//# sourceMappingURL=Identifier.d.ts.map

package/dist/ts/types/ts/Core/Helper/Identifier.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/types/ts/Core/Helper/ORCID.d.ts

@@ -0,0 +1,7 @@
+import { Option } from "@fable-org/fable-library-js/Option.js";
+export declare const orcidRegex: RegExp;
+export declare function tryGetOrcidNumber(orcid: string): Option<string>;
+export declare const orcidPrefix = "http://orcid.org/";
+export declare function $007CORCID$007C_$007C(input: string): Option<string>;
+export declare function tryGetOrcidURL(orcid: string): Option<string>;
+//# sourceMappingURL=ORCID.d.ts.map

package/dist/ts/types/ts/Core/Helper/ORCID.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ORCID.d.ts","sourceRoot":"","sources":["../../../../../../src/ARCtrl/ts/Core/Helper/ORCID.ts"],"names":[],"mappings":"AACA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAGtE,eAAO,MAAM,UAAU,QAAgD,CAAC;AAExE,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAQ/D;AAED,eAAO,MAAM,WAAW,sBAAsB,CAAC;AAE/C,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CASnE;AAED,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAS5D"}

package/dist/ts/types/ts/Core/Helper/Printer.d.ts

@@ -0,0 +1,5 @@
+export interface IISAPrintable {
+    Print(): string;
+    PrintCompact(): string;
+}
+//# sourceMappingURL=Printer.d.ts.map

package/dist/ts/types/ts/Core/Helper/Printer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Printer.d.ts","sourceRoot":"","sources":["../../../../../../src/ARCtrl/ts/Core/Helper/Printer.ts"],"names":[],"mappings":"AACA,MAAM,WAAW,aAAa;IAC1B,KAAK,IAAI,MAAM,CAAC;IAChB,YAAY,IAAI,MAAM,CAAA;CACzB"}

package/dist/ts/types/ts/Core/Helper/Regex.d.ts

@@ -0,0 +1,194 @@
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+export declare function Pattern_handleGroupPatterns(pattern: string): string;
+export declare const Pattern_ExcelNumberFormat = "\"(?<numberFormat>(.*?))\"";
+export declare const Pattern_TermAnnotationShortPattern = "(?<idspace>\\w+?):(?<localid>\\w+)";
+export declare const Pattern_TermAnnotationURIPattern = "http://purl.obolibrary.org/obo/(?<idspace>\\w+?)_(?<localid>\\w+)";
+export declare const Pattern_TermAnnotationURIPattern_lessRestrictive = ".*\\/(?<idspace>\\w+?)[:_](?<localid>\\w+)";
+export declare const Pattern_TermAnnotationURIPattern_MS_RO_PO = ".*252F(?<idspace>\\w+?)_(?<localid>\\w+)";
+export declare const Pattern_IOTypePattern = "(Input|Output)\\s*\\[(?<iotype>.+)\\]";
+export declare const Pattern_InputPattern = "Input\\s*\\[(?<iotype>.+)\\]";
+export declare const Pattern_OutputPattern = "Output\\s*\\[(?<iotype>.+)\\]";
+export declare const Pattern_CommentPattern = "Comment\\s*\\[(?<commentKey>.+)\\]";
+/**
+ * Matches, if the input string matches the given regex pattern.
+ */
+export declare function ActivePatterns_$007CRegex$007C_$007C(pattern: string, input: string): Option<any>;
+/**
+ * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
+ */
+export declare function ActivePatterns_$007CReferenceColumnHeader$007C_$007C(input: string): Option<{
+    Annotation: string;
+}>;
+/**
+ * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
+ */
+export declare function ActivePatterns_$007CTermColumn$007C_$007C(input: string): Option<{
+    TermColumnType: string;
+    TermName: string;
+}>;
+/**
+ * Matches a "Unit" column header.
+ */
+export declare function ActivePatterns_$007CUnitColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Parameter [Term]" or "Parameter Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CParameterColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Factor [Term]" or "Factor Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CFactorColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Characteristic [Term]" or "Characteristics [Term]" or "Characteristics Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Component [Term]" or "Component Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CComponentColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a short term string and returns the term source ref and the annotation number strings.
+ *
+ * Example: "MS:1003022" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTermAnnotationShort$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a term string (either short or URI) and returns the term source ref and the annotation number strings.
+ *
+ * Example 1: "MS:1003022" --> term source ref: "MS"; annotation number: "1003022"
+ *
+ * Example 2: "http://purl.obolibrary.org/obo/MS_1003022" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTermAnnotation$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Term Source REF (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Source REF (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTSRColumnHeader$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Term Accession Number (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Accession Number (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTANColumnHeader$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Input [InputType]" column header and returns the InputType as string.
+ */
+export declare function ActivePatterns_$007CInputColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Output [OutputType]" column header and returns the OutputType as string.
+ */
+export declare function ActivePatterns_$007COutputColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches auto-generated readable table names. Mainly used in ArcAssay.addTable(). Default tables will get such a name.
+ *
+ * Will match "New Table 10" and return the number `10`.
+ */
+export declare function ActivePatterns_$007CAutoGeneratedTableName$007C_$007C(input: string): Option<int32>;
+export declare function ActivePatterns_$007CComment$007C_$007C(input: string): Option<string>;
+export declare function tryParseReferenceColumnHeader(str: string): Option<{
+    Annotation: string;
+}>;
+export declare function tryParseTermAnnotationShort(str: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * This function can be used to extract `IDSPACE:LOCALID` (or: `Term Accession`) from Swate header strings or obofoundry conform URI strings.
+ *
+ * **Example 1:** "http://purl.obolibrary.org/obo/GO_000001" --> "GO:000001"
+ *
+ * **Example 2:** "Term Source REF (NFDI4PSO:0000064)" --> "NFDI4PSO:0000064"
+ */
+export declare function tryParseTermAnnotation(str: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Tries to parse 'str' to term accession and returns it in the format `Some "termsourceref:localtan"`. Exmp.: `Some "MS:000001"`
+ */
+export declare function tryGetTermAnnotationShortString(str: string): Option<string>;
+/**
+ * Parses 'str' to term accession and returns it in the format "termsourceref:localtan". Exmp.: "MS:000001"
+ */
+export declare function getTermAnnotationShortString(str: string): string;
+/**
+ * This function is used to parse Excel numberFormat string to term name.
+ *
+ * **Example 1:** "0.00 "degree Celsius"" --> "degree Celsius"
+ */
+export declare function tryParseExcelNumberFormat(headerStr: string): Option<string>;
+/**
+ * This function is used to match both Input and Output columns and capture the IOType as `iotype` group.
+ *
+ * **Example 1:** "Input [Sample]" --> "Sample"
+ */
+export declare function tryParseIOTypeHeader(headerStr: string): Option<string>;
+/**
+ * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
+ */
+export declare function tryParseTermColumn(input: string): Option<{
+    TermColumnType: string;
+    TermName: string;
+}>;
+/**
+ * Matches a "Unit" column header.
+ */
+export declare function tryParseUnitColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Parameter [Term]" or "Parameter Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseParameterColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Factor [Term]" or "Factor Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseFactorColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Characteristic [Term]" or "Characteristics [Term]" or "Characteristics Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseCharacteristicColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Component [Term]" or "Characteristics [Term]" or "Component Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseComponentColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Term Source REF (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Source REF (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function tryParseTSRColumnHeader(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Term Accession Number (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Accession Number (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function tryParseTANColumnHeader(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Input [InputType]" column header and returns the InputType as string.
+ */
+export declare function tryParseInputColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Output [OutputType]" column header and returns the OutputType as string.
+ */
+export declare function tryParseOutputColumnHeader(input: string): Option<string>;
+//# sourceMappingURL=Regex.d.ts.map

package/dist/ts/types/ts/Core/Helper/Regex.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/types/ts/Core/Helper/SemVer.d.ts

@@ -0,0 +1,20 @@
+import { Record } from "@fable-org/fable-library-js/Types.js";
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { IComparable, IEquatable } from "@fable-org/fable-library-js/Util.js";
+import { TypeInfo } from "@fable-org/fable-library-js/Reflection.js";
+export declare const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
+export declare class SemVer extends Record implements IEquatable<SemVer>, IComparable<SemVer> {
+    readonly Major: int32;
+    readonly Minor: int32;
+    readonly Patch: int32;
+    readonly PreRelease: Option<string>;
+    readonly Metadata: Option<string>;
+    constructor(Major: int32, Minor: int32, Patch: int32, PreRelease: Option<string>, Metadata: Option<string>);
+}
+export declare function SemVer_$reflection(): TypeInfo;
+export declare function SemVer_make(major: int32, minor: int32, patch: int32, pre: Option<string>, meta: Option<string>): SemVer;
+export declare function SemVer_create_Z55658624(major: int32, minor: int32, patch: int32, pre?: string, meta?: string): SemVer;
+export declare function SemVer_tryOfString_Z721C83C5(str: string): Option<SemVer>;
+export declare function SemVer__AsString(this$: SemVer): string;
+//# sourceMappingURL=SemVer.d.ts.map

package/dist/ts/types/ts/Core/Helper/SemVer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"SemVer.d.ts","sourceRoot":"","sources":["../../../../../../src/ARCtrl/ts/Core/Helper/SemVer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAY,MAAM,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAS,KAAK,EAAE,MAAM,sCAAsC,CAAC;AACpE,OAAO,EAA4B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACzF,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAAqD,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAKxH,eAAO,MAAM,iBAAiB,yHAAyH,CAAC;AAExJ,qBAAa,MAAO,SAAQ,MAAO,YAAW,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC;IACjF,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACpC,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;gBACtB,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC;CAQ7G;AAED,wBAAgB,kBAAkB,IAAI,QAAQ,CAE7C;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,MAAM,CAEvH;AAED,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,MAAM,CAErH;AAED,wBAAgB,4BAA4B,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAUxE;AAED,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAWtD"}

package/dist/ts/types/ts/Core/Helper/Url.d.ts

@@ -0,0 +1,10 @@
+import { IMap } from "@fable-org/fable-library-js/Util.js";
+export declare function OntobeeParser(tsr: string, localTan: string): string;
+export declare function BioregistryParser(tsr: string, localTan: string): string;
+export declare function OntobeeDPBOParser(tsr: string, localTan: string): string;
+export declare function MSParser(tsr: string, localTan: string): string;
+export declare function POParser(tsr: string, localTan: string): string;
+export declare function ROParser(tsr: string, localTan: string): string;
+export declare const uriParserCollection: IMap<string, ((arg0: string) => ((arg0: string) => string))>;
+export declare function createOAUri(tsr: string, localTan: string): string;
+//# sourceMappingURL=Url.d.ts.map

package/dist/ts/types/ts/Core/Helper/Url.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Url.d.ts","sourceRoot":"","sources":["../../../../../../src/ARCtrl/ts/Core/Helper/Url.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAG3D,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEnE;AAED,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEvE;AAED,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEvE;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,eAAO,MAAM,mBAAmB,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,CAAC,CAAo0F,CAAC;AAEl6F,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAQjE"}

package/dist/ts/types/ts/Core/IPropertyValue.d.ts

@@ -0,0 +1,13 @@
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { OntologyAnnotation } from "./OntologyAnnotation.js";
+import { Value_$union } from "./Value.js";
+export interface IPropertyValue {
+    AlternateName(): Option<string>;
+    Description(): Option<string>;
+    GetAdditionalType(): string;
+    GetCategory(): Option<OntologyAnnotation>;
+    GetUnit(): Option<OntologyAnnotation>;
+    GetValue(): Option<Value_$union>;
+    MeasurementMethod(): Option<string>;
+}
+//# sourceMappingURL=IPropertyValue.d.ts.map

package/dist/ts/types/ts/Core/IPropertyValue.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"IPropertyValue.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/IPropertyValue.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAE1C,MAAM,WAAW,cAAc;IAC3B,aAAa,IAAI,MAAM,CAAC,MAAM,CAAC,CAAC;IAChC,WAAW,IAAI,MAAM,CAAC,MAAM,CAAC,CAAC;IAC9B,iBAAiB,IAAI,MAAM,CAAC;IAC5B,WAAW,IAAI,MAAM,CAAC,kBAAkB,CAAC,CAAC;IAC1C,OAAO,IAAI,MAAM,CAAC,kBAAkB,CAAC,CAAC;IACtC,QAAQ,IAAI,MAAM,CAAC,YAAY,CAAC,CAAC;IACjC,iBAAiB,IAAI,MAAM,CAAC,MAAM,CAAC,CAAA;CACtC"}

package/dist/ts/types/ts/Core/IdentifierSetters.d.ts

@@ -0,0 +1,7 @@
+import { ArcTable } from "./Table/ArcTable.js";
+import { ArcInvestigation, ArcStudy, ArcAssay } from "./ArcTypes.js";
+export declare function setArcTableName(newName: string, table: ArcTable): ArcTable;
+export declare function setAssayIdentifier(newIdentifier: string, assay: ArcAssay): ArcAssay;
+export declare function setStudyIdentifier(newIdentifier: string, study: ArcStudy): ArcStudy;
+export declare function setInvestigationIdentifier(newIdentifier: string, investigation: ArcInvestigation): ArcInvestigation;
+//# sourceMappingURL=IdentifierSetters.d.ts.map

package/dist/ts/types/ts/Core/IdentifierSetters.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"IdentifierSetters.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/IdentifierSetters.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAErE,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAI1E;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,0BAA0B,CAAC,aAAa,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,gBAAgB,CAInH"}

package/dist/ts/types/ts/Core/OntologyAnnotation.d.ts

@@ -0,0 +1,48 @@
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { Comment$ } from "./Comment.js";
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+import { IISAPrintable } from "./Helper/Printer.js";
+import { TypeInfo } from "@fable-org/fable-library-js/Reflection.js";
+export declare class OntologyAnnotation implements IISAPrintable {
+    _name: Option<string>;
+    _termSourceREF: Option<string>;
+    _termAccessionNumber: Option<string>;
+    _comments: Comment$[];
+    constructor(name?: string, tsr?: string, tan?: string, comments?: Comment$[]);
+    get Name(): string | undefined;
+    set Name(name: Option<string>);
+    get TermSourceREF(): string | undefined;
+    set TermSourceREF(tsr: Option<string>);
+    get TermAccessionNumber(): string | undefined;
+    set TermAccessionNumber(tan: Option<string>);
+    get Comments(): Comment$[];
+    set Comments(comments: Comment$[]);
+    static make(name: Option<string>, tsr: Option<string>, tan: Option<string>, comments: Comment$[]): OntologyAnnotation;
+    static create(name?: string, tsr?: string, tan?: string, comments?: Comment$[]): OntologyAnnotation;
+    get TANInfo(): {
+        IDSpace: string;
+        LocalID: string;
+    } | undefined;
+    get NameText(): string;
+    static createUriAnnotation(termSourceRef: string, localTAN: string): string;
+    static fromTermAnnotation(tan: string, name?: string): OntologyAnnotation;
+    get TermAccessionShort(): string;
+    get TermAccessionOntobeeUrl(): string;
+    get TermAccessionAndOntobeeUrlIfShort(): string;
+    static toStringObject(oa: OntologyAnnotation, asOntobeePurlUrlIfShort?: boolean): {
+        TermAccessionNumber: string;
+        TermName: string;
+        TermSourceREF: string;
+    };
+    toString(): string;
+    isEmpty(): boolean;
+    GetHashCode(): int32;
+    Equals(obj: any): boolean;
+    Copy(): OntologyAnnotation;
+    Print(): string;
+    PrintCompact(): string;
+    CompareTo(obj: any): int32;
+}
+export declare function OntologyAnnotation_$reflection(): TypeInfo;
+export declare function OntologyAnnotation_$ctor_Z54349580(name?: string, tsr?: string, tan?: string, comments?: Comment$[]): OntologyAnnotation;
+//# sourceMappingURL=OntologyAnnotation.d.ts.map

package/dist/ts/types/ts/Core/OntologyAnnotation.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/types/ts/Core/OntologySourceReference.d.ts

@@ -0,0 +1,31 @@
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { Comment$ } from "./Comment.js";
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+import { TypeInfo } from "@fable-org/fable-library-js/Reflection.js";
+export declare class OntologySourceReference {
+    _description: Option<string>;
+    _file: Option<string>;
+    _name: Option<string>;
+    _version: Option<string>;
+    _comments: Comment$[];
+    constructor(description?: string, file?: string, name?: string, version?: string, comments?: Comment$[]);
+    get Description(): string | undefined;
+    set Description(description: Option<string>);
+    get File(): string | undefined;
+    set File(file: Option<string>);
+    get Name(): string | undefined;
+    set Name(name: Option<string>);
+    get Version(): string | undefined;
+    set Version(version: Option<string>);
+    get Comments(): Comment$[];
+    set Comments(comments: Comment$[]);
+    static make(description: Option<string>, file: Option<string>, name: Option<string>, version: Option<string>, comments: Comment$[]): OntologySourceReference;
+    static create(description?: string, file?: string, name?: string, version?: string, comments?: Comment$[]): OntologySourceReference;
+    static get empty(): OntologySourceReference;
+    Copy(): OntologySourceReference;
+    GetHashCode(): int32;
+    Equals(obj: any): boolean;
+}
+export declare function OntologySourceReference_$reflection(): TypeInfo;
+export declare function OntologySourceReference_$ctor_7C9A7CF8(description?: string, file?: string, name?: string, version?: string, comments?: Comment$[]): OntologySourceReference;
+//# sourceMappingURL=OntologySourceReference.d.ts.map

package/dist/ts/types/ts/Core/OntologySourceReference.d.ts.map

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