@nfdi4plants/arctrl 2.5.1 → 3.0.0-alpha.2

package/dist/ts/cjs/ts/Core/Process/ColumnIndex.js

@@ -0,0 +1,258 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.orderName = void 0;
+exports.createOrderComment = createOrderComment;
+exports.tryGetIndex = tryGetIndex;
+exports.setOntologyAnnotationIndexInplace = setOntologyAnnotationIndexInplace;
+exports.setOntologyAnnotationIndex = setOntologyAnnotationIndex;
+exports.tryGetOntologyAnnotationIndex = tryGetOntologyAnnotationIndex;
+exports.tryGetParameterIndex = tryGetParameterIndex;
+exports.tryGetParameterColumnIndex = tryGetParameterColumnIndex;
+exports.tryGetFactorIndex = tryGetFactorIndex;
+exports.tryGetFactorColumnIndex = tryGetFactorColumnIndex;
+exports.tryGetCharacteristicIndex = tryGetCharacteristicIndex;
+exports.tryGetCharacteristicColumnIndex = tryGetCharacteristicColumnIndex;
+exports.tryGetComponentIndex = tryGetComponentIndex;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static = ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F = ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex = ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F = ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex = ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static = ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static;
+exports.ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4 = ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4;
+exports.ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static = ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static;
+exports.ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9 = ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9;
+exports.ARCtrl_Process_Factor__Factor_GetColumnIndex = ARCtrl_Process_Factor__Factor_GetColumnIndex;
+exports.ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9 = ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9;
+exports.ARCtrl_Process_Factor__Factor_TryGetColumnIndex = ARCtrl_Process_Factor__Factor_TryGetColumnIndex;
+exports.ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732 = ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732;
+exports.ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex = ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex;
+exports.ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732 = ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732;
+exports.ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex = ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex;
+exports.ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static = ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static;
+exports.ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD = ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD;
+exports.ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex = ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex;
+exports.ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD = ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD;
+exports.ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex = ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex;
+exports.ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8 = ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8;
+exports.ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex = ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex;
+exports.ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8 = ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8;
+exports.ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex = ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex;
+exports.ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static = ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static;
+exports.ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15 = ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15;
+exports.ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex = ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex;
+exports.ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15 = ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15;
+exports.ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex = ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex;
+exports.ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263 = ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263;
+exports.ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex = ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex;
+exports.ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263 = ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263;
+exports.ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex = ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex;
+exports.ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static = ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static;
+exports.ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25 = ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25;
+exports.ARCtrl_Process_Component__Component_GetColumnIndex = ARCtrl_Process_Component__Component_GetColumnIndex;
+exports.ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25 = ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25;
+exports.ARCtrl_Process_Component__Component_TryGetColumnIndex = ARCtrl_Process_Component__Component_TryGetColumnIndex;
+const Int32_js_1 = require("@fable-org/fable-library-js/Int32.js");
+const Types_js_1 = require("@fable-org/fable-library-js/Types.js");
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const Comment_js_1 = require("../Comment.js");
+const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
+const CommentList_js_1 = require("../CommentList.js");
+const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
+const ProtocolParameter_js_1 = require("./ProtocolParameter.js");
+const Factor_js_1 = require("./Factor.js");
+const MaterialAttribute_js_1 = require("./MaterialAttribute.js");
+const Component_js_1 = require("./Component.js");
+function tryInt(str) {
+    let matchValue;
+    let outArg = 0;
+    matchValue = [(0, Int32_js_1.tryParse)(str, 511, false, 32, new Types_js_1.FSharpRef(() => outArg, (v) => {
+            outArg = (v | 0);
+        })), outArg];
+    if (matchValue[0]) {
+        return matchValue[1];
+    }
+    else {
+        return undefined;
+    }
+}
+exports.orderName = "ColumnIndex";
+function createOrderComment(index) {
+    return Comment_js_1.Comment$.create(exports.orderName, (0, Util_js_1.int32ToString)(index));
+}
+function tryGetIndex(comments) {
+    const matchValue = (0, CommentList_js_1.tryItem)(exports.orderName, comments);
+    if (matchValue != null) {
+        const ci = (0, Option_js_1.value)(matchValue);
+        const i = (0, Seq_js_1.findIndex)((c) => (0, Util_js_1.equals)(c.Name, exports.orderName), comments) | 0;
+        comments.splice(i, 1);
+        return tryInt(ci);
+    }
+    else {
+        return undefined;
+    }
+}
+function setOntologyAnnotationIndexInplace(i, oa) {
+    void (oa.Comments.push(createOrderComment(i)));
+}
+function setOntologyAnnotationIndex(i, oa) {
+    const oac = oa.Copy();
+    setOntologyAnnotationIndexInplace(i, oac);
+    return oac;
+}
+function tryGetOntologyAnnotationIndex(oa) {
+    return tryGetIndex(oa.Comments);
+}
+function tryGetParameterIndex(param) {
+    return (0, Option_js_1.bind)((oa) => tryGetIndex(oa.Comments), param.ParameterName);
+}
+function tryGetParameterColumnIndex(paramValue) {
+    return (0, Option_js_1.bind)(tryGetParameterIndex, paramValue.Category);
+}
+function tryGetFactorIndex(factor) {
+    return (0, Option_js_1.bind)((oa) => tryGetIndex(oa.Comments), factor.FactorType);
+}
+function tryGetFactorColumnIndex(factorValue) {
+    return (0, Option_js_1.bind)(tryGetFactorIndex, factorValue.Category);
+}
+function tryGetCharacteristicIndex(characteristic) {
+    return (0, Option_js_1.bind)((oa) => tryGetIndex(oa.Comments), characteristic.CharacteristicType);
+}
+function tryGetCharacteristicColumnIndex(characteristicValue) {
+    return (0, Option_js_1.bind)(tryGetCharacteristicIndex, characteristicValue.Category);
+}
+function tryGetComponentIndex(comp) {
+    return (0, Option_js_1.bind)((oa) => tryGetIndex(oa.Comments), comp.ComponentType);
+}
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
+    return Factor_js_1.Factor.fromString(name, term, source, accession, [createOrderComment(valueIndex)]);
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F(f) {
+    return (0, Option_js_1.value)(tryGetOntologyAnnotationIndex(f));
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetOntologyAnnotationIndex(this$));
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F(f) {
+    return tryGetOntologyAnnotationIndex(f);
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex(this$) {
+    return tryGetOntologyAnnotationIndex(this$);
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(i, oa) {
+    return setOntologyAnnotationIndex(i, oa);
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(this$, i) {
+    setOntologyAnnotationIndexInplace(i, this$);
+}
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+function ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
+    return Factor_js_1.Factor.fromString(name, term, source, accession, [createOrderComment(valueIndex)]);
+}
+function ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9(f) {
+    return (0, Option_js_1.value)(tryGetFactorIndex(f));
+}
+function ARCtrl_Process_Factor__Factor_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetFactorIndex(this$));
+}
+function ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9(f) {
+    return tryGetFactorIndex(f);
+}
+function ARCtrl_Process_Factor__Factor_TryGetColumnIndex(this$) {
+    return tryGetFactorIndex(this$);
+}
+function ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732(f) {
+    return (0, Option_js_1.value)(tryGetFactorColumnIndex(f));
+}
+function ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetFactorColumnIndex(this$));
+}
+function ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732(f) {
+    return tryGetFactorColumnIndex(f);
+}
+function ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex(this$) {
+    return tryGetFactorColumnIndex(this$);
+}
+/**
+ * Create a ISAJson characteristic from ISATab string entries
+ */
+function ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static(term, source, accession, valueIndex) {
+    return (0, MaterialAttribute_js_1.MaterialAttribute_fromString_5980DC03)(term, source, accession, [createOrderComment(valueIndex)]);
+}
+function ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD(m) {
+    return (0, Option_js_1.value)(tryGetCharacteristicIndex(m));
+}
+function ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetCharacteristicIndex(this$));
+}
+function ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD(m) {
+    return tryGetCharacteristicIndex(m);
+}
+function ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex(this$) {
+    return tryGetCharacteristicIndex(this$);
+}
+function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8(m) {
+    return (0, Option_js_1.value)(tryGetCharacteristicColumnIndex(m));
+}
+function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetCharacteristicColumnIndex(this$));
+}
+function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8(m) {
+    return tryGetCharacteristicColumnIndex(m);
+}
+function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex(this$) {
+    return tryGetCharacteristicColumnIndex(this$);
+}
+/**
+ * Create a ISAJson parameter from ISATab string entries
+ */
+function ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static(term, source, accession, valueIndex) {
+    return ProtocolParameter_js_1.ProtocolParameter.fromString(term, source, accession, [createOrderComment(valueIndex)]);
+}
+function ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15(p) {
+    return (0, Option_js_1.value)(tryGetParameterIndex(p));
+}
+function ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetParameterIndex(this$));
+}
+function ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15(p) {
+    return tryGetParameterIndex(p);
+}
+function ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(this$) {
+    return tryGetParameterIndex(this$);
+}
+function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263(p) {
+    return (0, Option_js_1.value)(tryGetParameterColumnIndex(p));
+}
+function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetParameterColumnIndex(this$));
+}
+function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263(p) {
+    return tryGetParameterColumnIndex(p);
+}
+function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex(this$) {
+    return tryGetParameterColumnIndex(this$);
+}
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+function ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
+    return (0, Component_js_1.Component_fromISAString_7C9A7CF8)(name, term, source, accession, [createOrderComment(valueIndex)]);
+}
+function ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25(f) {
+    return (0, Option_js_1.value)(tryGetComponentIndex(f));
+}
+function ARCtrl_Process_Component__Component_GetColumnIndex(this$) {
+    return (0, Option_js_1.value)(tryGetComponentIndex(this$));
+}
+function ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25(f) {
+    return tryGetComponentIndex(f);
+}
+function ARCtrl_Process_Component__Component_TryGetColumnIndex(this$) {
+    return tryGetComponentIndex(this$);
+}

package/dist/ts/cjs/ts/Core/Process/Component.js

@@ -0,0 +1,200 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Component = void 0;
+exports.Component_$reflection = Component_$reflection;
+exports.Component__get_ComponentName = Component__get_ComponentName;
+exports.Component_make = Component_make;
+exports.Component_create_Z2F0B38C7 = Component_create_Z2F0B38C7;
+exports.Component_get_empty = Component_get_empty;
+exports.Component_composeName = Component_composeName;
+exports.Component_decomposeName_Z721C83C5 = Component_decomposeName_Z721C83C5;
+exports.Component_fromISAString_7C9A7CF8 = Component_fromISAString_7C9A7CF8;
+exports.Component_toStringObject_Z685B8F25 = Component_toStringObject_Z685B8F25;
+exports.Component__get_NameText = Component__get_NameText;
+exports.Component__get_UnitText = Component__get_UnitText;
+exports.Component__get_ValueText = Component__get_ValueText;
+exports.Component__get_ValueWithUnitText = Component__get_ValueWithUnitText;
+exports.Component__MapCategory_658CFBF6 = Component__MapCategory_658CFBF6;
+exports.Component__SetCategory_ZDED3A0F = Component__SetCategory_ZDED3A0F;
+exports.Component_createAsPV = Component_createAsPV;
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const OntologyAnnotation_js_1 = require("../OntologyAnnotation.js");
+const Value_js_1 = require("../Value.js");
+const Types_js_1 = require("@fable-org/fable-library-js/Types.js");
+const Reflection_js_1 = require("@fable-org/fable-library-js/Reflection.js");
+const Regex_js_1 = require("../Helper/Regex.js");
+const Collections_js_1 = require("../Helper/Collections.js");
+const String_js_1 = require("@fable-org/fable-library-js/String.js");
+class Component extends Types_js_1.Record {
+    constructor(ComponentValue, ComponentUnit, ComponentType) {
+        super();
+        this.ComponentValue = ComponentValue;
+        this.ComponentUnit = ComponentUnit;
+        this.ComponentType = ComponentType;
+    }
+    AlternateName() {
+        const this$ = this;
+        return Component__get_ComponentName(this$);
+    }
+    MeasurementMethod() {
+        return undefined;
+    }
+    Description() {
+        return undefined;
+    }
+    GetCategory() {
+        const this$ = this;
+        return this$.ComponentType;
+    }
+    GetAdditionalType() {
+        return "Component";
+    }
+    GetValue() {
+        const this$ = this;
+        return this$.ComponentValue;
+    }
+    GetUnit() {
+        const this$ = this;
+        return this$.ComponentUnit;
+    }
+}
+exports.Component = Component;
+function Component_$reflection() {
+    return (0, Reflection_js_1.record_type)("ARCtrl.Process.Component", [], Component, () => [["ComponentValue", (0, Reflection_js_1.option_type)((0, Value_js_1.Value_$reflection)())], ["ComponentUnit", (0, Reflection_js_1.option_type)((0, OntologyAnnotation_js_1.OntologyAnnotation_$reflection)())], ["ComponentType", (0, Reflection_js_1.option_type)((0, OntologyAnnotation_js_1.OntologyAnnotation_$reflection)())]]);
+}
+function Component__get_ComponentName(this$) {
+    return (0, Option_js_1.map)((v) => Component_composeName(v, this$.ComponentUnit), this$.ComponentValue);
+}
+function Component_make(value, unit, componentType) {
+    return new Component(value, unit, componentType);
+}
+function Component_create_Z2F0B38C7(value, unit, componentType) {
+    return Component_make(value, unit, componentType);
+}
+function Component_get_empty() {
+    return Component_create_Z2F0B38C7();
+}
+/**
+ * This function creates a string containing full isa term triplet information about the component
+ *
+ * Components do not have enough fields in ISA-JSON to include all existing ontology term information.
+ * This function allows us, to add the same information as `Parameter`, `Characteristics`.., to `Component`.
+ * Without this string composition we loose the ontology information for the header value.
+ */
+function Component_composeName(value, unit) {
+    if (value.tag === /* Ontology */ 0) {
+        const oa = value.fields[0];
+        return `${oa.NameText} (${oa.TermAccessionShort})`;
+    }
+    else if (unit != null) {
+        const u = (0, Option_js_1.value)(unit);
+        return `${value.Text} ${u.NameText} (${u.TermAccessionShort})`;
+    }
+    else {
+        return `${value.Text}`;
+    }
+}
+/**
+ * This function parses the given Component header string format into the ISA-JSON Component type
+ *
+ * Components do not have enough fields in ISA-JSON to include all existing ontology term information.
+ * This function allows us, to add the same information as `Parameter`, `Characteristics`.., to `Component`.
+ * Without this string composition we loose the ontology information for the header value.
+ */
+function Component_decomposeName_Z721C83C5(name) {
+    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(?<value>[\\d\\.]+) (?<unit>.+) \\((?<ontology>[^(]*:[^)]*)\\)", name);
+    if (activePatternResult != null) {
+        const unitr = (0, Option_js_1.value)(activePatternResult);
+        let oa;
+        const tan = (unitr.groups && unitr.groups.ontology) || "";
+        oa = OntologyAnnotation_js_1.OntologyAnnotation.fromTermAnnotation(tan);
+        let v;
+        const value = (unitr.groups && unitr.groups.value) || "";
+        v = Value_js_1.Value.fromString(value);
+        const u = (unitr.groups && unitr.groups.unit) || "";
+        oa.Name = u;
+        return [v, oa];
+    }
+    else {
+        const activePatternResult_1 = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(?<value>[^\\(]+) \\((?<ontology>[^(]*:[^)]*)\\)", name);
+        if (activePatternResult_1 != null) {
+            const r = (0, Option_js_1.value)(activePatternResult_1);
+            let oa_1;
+            const tan_1 = (r.groups && r.groups.ontology) || "";
+            oa_1 = OntologyAnnotation_js_1.OntologyAnnotation.fromTermAnnotation(tan_1);
+            const v_1 = (r.groups && r.groups.value) || "";
+            oa_1.Name = v_1;
+            return [(0, Value_js_1.Value_Ontology)(oa_1), undefined];
+        }
+        else {
+            const activePatternResult_2 = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(?<value>[^\\(\\)]+) \\(\\)", name);
+            if (activePatternResult_2 != null) {
+                const r_1 = (0, Option_js_1.value)(activePatternResult_2);
+                return [(0, Value_js_1.Value_Ontology)(new OntologyAnnotation_js_1.OntologyAnnotation((r_1.groups && r_1.groups.value) || "")), undefined];
+            }
+            else {
+                return [(0, Value_js_1.Value_Name)(name), undefined];
+            }
+        }
+    }
+}
+/**
+ * Create a ISAJson Component from ISATab string entries
+ */
+function Component_fromISAString_7C9A7CF8(name, term, source, accession, comments) {
+    let cType;
+    const v = OntologyAnnotation_js_1.OntologyAnnotation.create((0, Option_js_1.unwrap)(term), (0, Option_js_1.unwrap)(source), (0, Option_js_1.unwrap)(accession), (0, Option_js_1.unwrap)(comments));
+    cType = (0, Collections_js_1.Option_fromValueWithDefault)(new OntologyAnnotation_js_1.OntologyAnnotation(), v);
+    if (name == null) {
+        return Component_make(undefined, undefined, cType);
+    }
+    else {
+        const patternInput = Component_decomposeName_Z721C83C5((0, Option_js_1.value)(name));
+        return Component_make((0, Collections_js_1.Option_fromValueWithDefault)((0, Value_js_1.Value_Name)(""), patternInput[0]), patternInput[1], cType);
+    }
+}
+/**
+ * Get ISATab string entries from an ISAJson Component object
+ */
+function Component_toStringObject_Z685B8F25(c) {
+    let oa_1;
+    const value = {
+        TermAccessionNumber: "",
+        TermName: "",
+        TermSourceREF: "",
+    };
+    oa_1 = (0, Option_js_1.defaultArg)((0, Option_js_1.map)((oa) => OntologyAnnotation_js_1.OntologyAnnotation.toStringObject(oa), c.ComponentType), value);
+    return [(0, Option_js_1.defaultArg)(Component__get_ComponentName(c), ""), oa_1];
+}
+function Component__get_NameText(this$) {
+    return (0, Option_js_1.defaultArg)((0, Option_js_1.map)((c) => c.NameText, this$.ComponentType), "");
+}
+/**
+ * Returns the ontology of the category of the Value as string
+ */
+function Component__get_UnitText(this$) {
+    return (0, Option_js_1.defaultArg)((0, Option_js_1.map)((c) => c.NameText, this$.ComponentUnit), "");
+}
+function Component__get_ValueText(this$) {
+    return (0, Option_js_1.defaultArg)((0, Option_js_1.map)((c) => c.Text, this$.ComponentValue), "");
+}
+function Component__get_ValueWithUnitText(this$) {
+    const unit = (0, Option_js_1.map)((oa) => oa.NameText, this$.ComponentUnit);
+    const v = Component__get_ValueText(this$);
+    if (unit == null) {
+        return v;
+    }
+    else {
+        const u = (0, Option_js_1.value)(unit);
+        return (0, String_js_1.toText)((0, String_js_1.printf)("%s %s"))(v)(u);
+    }
+}
+function Component__MapCategory_658CFBF6(this$, f) {
+    return new Component(this$.ComponentValue, this$.ComponentUnit, (0, Option_js_1.map)(f, this$.ComponentType));
+}
+function Component__SetCategory_ZDED3A0F(this$, c) {
+    return new Component(this$.ComponentValue, this$.ComponentUnit, c);
+}
+function Component_createAsPV(alternateName, measurementMethod, description, category, value, unit) {
+    return Component_create_Z2F0B38C7((0, Option_js_1.unwrap)(value), (0, Option_js_1.unwrap)(unit), (0, Option_js_1.unwrap)(category));
+}

package/dist/ts/cjs/ts/Core/Process/Factor.js

@@ -0,0 +1,111 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Factor = void 0;
+exports.Factor_$reflection = Factor_$reflection;
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const OntologyAnnotation_js_1 = require("../OntologyAnnotation.js");
+const Comment_js_1 = require("../Comment.js");
+const Collections_js_1 = require("../Helper/Collections.js");
+const List_js_1 = require("@fable-org/fable-library-js/List.js");
+const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
+const Types_js_1 = require("@fable-org/fable-library-js/Types.js");
+const Reflection_js_1 = require("@fable-org/fable-library-js/Reflection.js");
+class Factor extends Types_js_1.Record {
+    constructor(Name, FactorType, Comments) {
+        super();
+        this.Name = Name;
+        this.FactorType = FactorType;
+        this.Comments = Comments;
+    }
+    static make(name, factorType, comments) {
+        return new Factor(name, factorType, comments);
+    }
+    static create(Name, FactorType, Comments) {
+        return Factor.make(Name, FactorType, Comments);
+    }
+    static get empty() {
+        return Factor.create();
+    }
+    static fromString(name, term, source, accession, comments) {
+        const oa = OntologyAnnotation_js_1.OntologyAnnotation.create(term, source, accession, (0, Option_js_1.unwrap)(comments));
+        const name_1 = (0, Collections_js_1.Option_fromValueWithDefault)("", name);
+        const factorType = (0, Collections_js_1.Option_fromValueWithDefault)(new OntologyAnnotation_js_1.OntologyAnnotation(), oa);
+        return Factor.make(name_1, factorType, undefined);
+    }
+    static toStringObject(factor) {
+        const value = {
+            TermAccessionNumber: "",
+            TermName: "",
+            TermSourceREF: "",
+        };
+        return (0, Option_js_1.defaultArg)((0, Option_js_1.map)((oa) => OntologyAnnotation_js_1.OntologyAnnotation.toStringObject(oa), factor.FactorType), value);
+    }
+    get NameText() {
+        const this$ = this;
+        return (0, Option_js_1.defaultArg)(this$.Name, "");
+    }
+    MapCategory(f) {
+        const this$ = this;
+        return new Factor(this$.Name, (0, Option_js_1.map)(f, this$.FactorType), this$.Comments);
+    }
+    SetCategory(c) {
+        const this$ = this;
+        return new Factor(this$.Name, c, this$.Comments);
+    }
+    static tryGetByName(name, factors) {
+        return (0, List_js_1.tryFind)((f) => (0, Util_js_1.equals)(f.Name, name), factors);
+    }
+    static existsByName(name, factors) {
+        return (0, List_js_1.exists)((f) => (0, Util_js_1.equals)(f.Name, name), factors);
+    }
+    static add(factors, factor) {
+        return (0, List_js_1.append)(factors, (0, List_js_1.singleton)(factor));
+    }
+    static removeByName(name, factors) {
+        return (0, List_js_1.filter)((f) => !(0, Util_js_1.equals)(f.Name, name), factors);
+    }
+    static getComments(factor) {
+        return factor.Comments;
+    }
+    static mapComments(f, factor) {
+        return new Factor(factor.Name, factor.FactorType, (0, Option_js_1.map)(f, factor.Comments));
+    }
+    static setComments(factor, comments) {
+        return new Factor(factor.Name, factor.FactorType, comments);
+    }
+    static getFactorType(factor) {
+        return factor.FactorType;
+    }
+    static mapFactorType(f, factor) {
+        return new Factor(factor.Name, (0, Option_js_1.map)(f, factor.FactorType), factor.Comments);
+    }
+    static setFactorType(factor, factorType) {
+        return new Factor(factor.Name, factorType, factor.Comments);
+    }
+    static tryGetName(f) {
+        return f.Name;
+    }
+    static getNameAsString(f) {
+        return f.NameText;
+    }
+    static nameEqualsString(name, f) {
+        return f.NameText === name;
+    }
+    Copy() {
+        const this$ = this;
+        const comments = (0, Option_js_1.map)((a) => (0, Collections_js_1.ResizeArray_map)((c) => c.Copy(), a), this$.Comments);
+        return Factor.make(this$.Name, this$.FactorType, comments);
+    }
+    Print() {
+        const this$ = this;
+        return (0, Types_js_1.toString)(this$);
+    }
+    PrintCompact() {
+        const this$ = this;
+        return "OA " + this$.NameText;
+    }
+}
+exports.Factor = Factor;
+function Factor_$reflection() {
+    return (0, Reflection_js_1.record_type)("ARCtrl.Process.Factor", [], Factor, () => [["Name", (0, Reflection_js_1.option_type)(Reflection_js_1.string_type)], ["FactorType", (0, Reflection_js_1.option_type)((0, OntologyAnnotation_js_1.OntologyAnnotation_$reflection)())], ["Comments", (0, Reflection_js_1.option_type)((0, Reflection_js_1.array_type)((0, Comment_js_1.Comment$_$reflection)()))]]);
+}