@nfdi4plants/arctrl 2.5.1 → 3.0.0-alpha.2

package/Spreadsheet/Metadata/Study.js

@@ -1,258 +0,0 @@
-import { Record } from "../../fable_modules/fable-library-js.4.24.0/Types.js";
-import { record_type, list_type, string_type } from "../../fable_modules/fable-library-js.4.24.0/Reflection.js";
-import { Comment$_$reflection } from "../../Core/Comment.js";
-import { ofSeq, append, reverse, cons, empty, map, ofArray } from "../../fable_modules/fable-library-js.4.24.0/List.js";
-import { Comment_toString, Comment_fromString } from "./Comment.js";
-import { SparseRowModule_fromValues, SparseTable_ToRows_759CAFC1, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./SparseTable.js";
-import { Study_fileNameFromIdentifier, createMissingIdentifier } from "../../Core/Helper/Identifier.js";
-import { addToDict } from "../../fable_modules/fable-library-js.4.24.0/MapUtil.js";
-import { defaultArg } from "../../fable_modules/fable-library-js.4.24.0/Option.js";
-import { Option_fromValueWithDefault, ResizeArray_iter } from "../../Core/Helper/Collections.js";
-import { List_distinct } from "../../fable_modules/fable-library-js.4.24.0/Seq2.js";
-import { stringHash } from "../../fable_modules/fable-library-js.4.24.0/Util.js";
-import { ArcStudy } from "../../Core/ArcTypes.js";
-import { toRows as toRows_1, fromRows as fromRows_1 } from "./DesignDescriptors.js";
-import { toRows as toRows_2, fromRows as fromRows_2 } from "./Publication.js";
-import { toRows as toRows_3, fromRows as fromRows_3 } from "./Factors.js";
-import { toRows as toRows_4, fromRows as fromRows_4 } from "./Assays.js";
-import { toRows as toRows_5, fromRows as fromRows_5 } from "./Protocols.js";
-import { toRows as toRows_6, fromRows as fromRows_6 } from "./Contacts.js";
-import { singleton, append as append_1, delay, collect } from "../../fable_modules/fable-library-js.4.24.0/Seq.js";
-import { ARCtrl_ArcTable__ArcTable_GetProcesses, ARCtrl_ArcTable__ArcTable_GetProtocols } from "../../Core/Conversion.js";
-import { getFactors } from "../../Core/Process/ProcessSequence.js";
-
-export class StudyInfo extends Record {
-    constructor(Identifier, Title, Description, SubmissionDate, PublicReleaseDate, FileName, Comments) {
-        super();
-        this.Identifier = Identifier;
-        this.Title = Title;
-        this.Description = Description;
-        this.SubmissionDate = SubmissionDate;
-        this.PublicReleaseDate = PublicReleaseDate;
-        this.FileName = FileName;
-        this.Comments = Comments;
-    }
-}
-
-export function StudyInfo_$reflection() {
-    return record_type("ARCtrl.Spreadsheet.Studies.StudyInfo", [], StudyInfo, () => [["Identifier", string_type], ["Title", string_type], ["Description", string_type], ["SubmissionDate", string_type], ["PublicReleaseDate", string_type], ["FileName", string_type], ["Comments", list_type(Comment$_$reflection())]]);
-}
-
-export function StudyInfo_create(identifier, title, description, submissionDate, publicReleaseDate, fileName, comments) {
-    return new StudyInfo(identifier, title, description, submissionDate, publicReleaseDate, fileName, comments);
-}
-
-export function StudyInfo_get_Labels() {
-    return ofArray(["Study Identifier", "Study Title", "Study Description", "Study Submission Date", "Study Public Release Date", "Study File Name"]);
-}
-
-export function StudyInfo_FromSparseTable_3ECCA699(matrix) {
-    const comments = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
-    return StudyInfo_create(SparseTable__TryGetValueDefault_5BAE6133(matrix, createMissingIdentifier(), ["Study Identifier", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Title", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Description", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Submission Date", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study Public Release Date", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Study File Name", 0]), comments);
-}
-
-export function StudyInfo_ToSparseTable_1680536E(study) {
-    const matrix = SparseTable_Create_Z2192E64B(undefined, StudyInfo_get_Labels(), undefined, 2);
-    let commentKeys = empty();
-    const patternInput = study.Identifier.startsWith("MISSING_IDENTIFIER_") ? ["", ""] : [study.Identifier, Study_fileNameFromIdentifier(study.Identifier)];
-    addToDict(matrix.Matrix, ["Study Identifier", 1], patternInput[0]);
-    addToDict(matrix.Matrix, ["Study Title", 1], defaultArg(study.Title, ""));
-    addToDict(matrix.Matrix, ["Study Description", 1], defaultArg(study.Description, ""));
-    addToDict(matrix.Matrix, ["Study Submission Date", 1], defaultArg(study.SubmissionDate, ""));
-    addToDict(matrix.Matrix, ["Study Public Release Date", 1], defaultArg(study.PublicReleaseDate, ""));
-    addToDict(matrix.Matrix, ["Study File Name", 1], patternInput[1]);
-    ResizeArray_iter((comment) => {
-        const patternInput_1 = Comment_toString(comment);
-        const n = patternInput_1[0];
-        commentKeys = cons(n, commentKeys);
-        addToDict(matrix.Matrix, [n, 1], patternInput_1[1]);
-    }, study.Comments);
-    return new SparseTable(matrix.Matrix, matrix.Keys, reverse(List_distinct(commentKeys, {
-        Equals: (x, y) => (x === y),
-        GetHashCode: stringHash,
-    })), matrix.ColumnCount);
-}
-
-export function StudyInfo_fromRows(lineNumber, rows) {
-    const tupledArg = SparseTable_FromRows_Z5579EC29(rows, StudyInfo_get_Labels(), lineNumber);
-    return [tupledArg[0], tupledArg[1], tupledArg[2], StudyInfo_FromSparseTable_3ECCA699(tupledArg[3])];
-}
-
-export function StudyInfo_toRows_1680536E(study) {
-    return SparseTable_ToRows_759CAFC1(StudyInfo_ToSparseTable_1680536E(study));
-}
-
-/**
- * FACTORS AND PROTOCOLS ARE NOT USED ANYMORE, Lukas, 21.03.24
- */
-export function fromParts(studyInfo, designDescriptors, publications, factors, assays, protocols, contacts) {
-    const assayIdentifiers = map((assay) => assay.Identifier, assays);
-    let arcstudy;
-    const title = Option_fromValueWithDefault("", studyInfo.Title);
-    const description = Option_fromValueWithDefault("", studyInfo.Description);
-    const submissionDate = Option_fromValueWithDefault("", studyInfo.SubmissionDate);
-    const publicReleaseDate = Option_fromValueWithDefault("", studyInfo.PublicReleaseDate);
-    const publications_1 = Array.from(publications);
-    const contacts_1 = Array.from(contacts);
-    const studyDesignDescriptors = Array.from(designDescriptors);
-    const registeredAssayIdentifiers = Array.from(assayIdentifiers);
-    const comments = Array.from(studyInfo.Comments);
-    arcstudy = ArcStudy.make(studyInfo.Identifier, title, description, submissionDate, publicReleaseDate, publications_1, contacts_1, studyDesignDescriptors, [], undefined, registeredAssayIdentifiers, comments);
-    if (arcstudy.isEmpty && (arcstudy.Identifier === "")) {
-        return undefined;
-    }
-    else {
-        return [arcstudy, assays];
-    }
-}
-
-export function fromRows(lineNumber, en) {
-    const loop = (lastLine_mut, studyInfo_mut, designDescriptors_mut, publications_mut, factors_mut, assays_mut, protocols_mut, contacts_mut, remarks_mut, lineNumber_1_mut) => {
-        loop:
-        while (true) {
-            const lastLine = lastLine_mut, studyInfo = studyInfo_mut, designDescriptors = designDescriptors_mut, publications = publications_mut, factors = factors_mut, assays = assays_mut, protocols = protocols_mut, contacts = contacts_mut, remarks = remarks_mut, lineNumber_1 = lineNumber_1_mut;
-            let matchResult, k_6, k_7, k_8, k_9, k_10, k_11, k_12;
-            if (lastLine != null) {
-                switch (lastLine) {
-                    case "STUDY DESIGN DESCRIPTORS": {
-                        matchResult = 0;
-                        k_6 = lastLine;
-                        break;
-                    }
-                    case "STUDY PUBLICATIONS": {
-                        matchResult = 1;
-                        k_7 = lastLine;
-                        break;
-                    }
-                    case "STUDY FACTORS": {
-                        matchResult = 2;
-                        k_8 = lastLine;
-                        break;
-                    }
-                    case "STUDY ASSAYS": {
-                        matchResult = 3;
-                        k_9 = lastLine;
-                        break;
-                    }
-                    case "STUDY PROTOCOLS": {
-                        matchResult = 4;
-                        k_10 = lastLine;
-                        break;
-                    }
-                    case "STUDY CONTACTS": {
-                        matchResult = 5;
-                        k_11 = lastLine;
-                        break;
-                    }
-                    default: {
-                        matchResult = 6;
-                        k_12 = lastLine;
-                    }
-                }
-            }
-            else {
-                matchResult = 6;
-                k_12 = lastLine;
-            }
-            switch (matchResult) {
-                case 0: {
-                    const patternInput = fromRows_1("Study Design", lineNumber_1 + 1, en);
-                    lastLine_mut = patternInput[0];
-                    studyInfo_mut = studyInfo;
-                    designDescriptors_mut = patternInput[3];
-                    publications_mut = publications;
-                    factors_mut = factors;
-                    assays_mut = assays;
-                    protocols_mut = protocols;
-                    contacts_mut = contacts;
-                    remarks_mut = append(remarks, patternInput[2]);
-                    lineNumber_1_mut = patternInput[1];
-                    continue loop;
-                }
-                case 1: {
-                    const patternInput_1 = fromRows_2("Study Publication", lineNumber_1 + 1, en);
-                    lastLine_mut = patternInput_1[0];
-                    studyInfo_mut = studyInfo;
-                    designDescriptors_mut = designDescriptors;
-                    publications_mut = patternInput_1[3];
-                    factors_mut = factors;
-                    assays_mut = assays;
-                    protocols_mut = protocols;
-                    contacts_mut = contacts;
-                    remarks_mut = append(remarks, patternInput_1[2]);
-                    lineNumber_1_mut = patternInput_1[1];
-                    continue loop;
-                }
-                case 2: {
-                    const patternInput_2 = fromRows_3("Study Factor", lineNumber_1 + 1, en);
-                    lastLine_mut = patternInput_2[0];
-                    studyInfo_mut = studyInfo;
-                    designDescriptors_mut = designDescriptors;
-                    publications_mut = publications;
-                    factors_mut = patternInput_2[3];
-                    assays_mut = assays;
-                    protocols_mut = protocols;
-                    contacts_mut = contacts;
-                    remarks_mut = append(remarks, patternInput_2[2]);
-                    lineNumber_1_mut = patternInput_2[1];
-                    continue loop;
-                }
-                case 3: {
-                    const patternInput_3 = fromRows_4("Study Assay", lineNumber_1 + 1, en);
-                    lastLine_mut = patternInput_3[0];
-                    studyInfo_mut = studyInfo;
-                    designDescriptors_mut = designDescriptors;
-                    publications_mut = publications;
-                    factors_mut = factors;
-                    assays_mut = patternInput_3[3];
-                    protocols_mut = protocols;
-                    contacts_mut = contacts;
-                    remarks_mut = append(remarks, patternInput_3[2]);
-                    lineNumber_1_mut = patternInput_3[1];
-                    continue loop;
-                }
-                case 4: {
-                    const patternInput_4 = fromRows_5("Study Protocol", lineNumber_1 + 1, en);
-                    lastLine_mut = patternInput_4[0];
-                    studyInfo_mut = studyInfo;
-                    designDescriptors_mut = designDescriptors;
-                    publications_mut = publications;
-                    factors_mut = factors;
-                    assays_mut = assays;
-                    protocols_mut = patternInput_4[3];
-                    contacts_mut = contacts;
-                    remarks_mut = append(remarks, patternInput_4[2]);
-                    lineNumber_1_mut = patternInput_4[1];
-                    continue loop;
-                }
-                case 5: {
-                    const patternInput_5 = fromRows_6("Study Person", lineNumber_1 + 1, en);
-                    lastLine_mut = patternInput_5[0];
-                    studyInfo_mut = studyInfo;
-                    designDescriptors_mut = designDescriptors;
-                    publications_mut = publications;
-                    factors_mut = factors;
-                    assays_mut = assays;
-                    protocols_mut = protocols;
-                    contacts_mut = patternInput_5[3];
-                    remarks_mut = append(remarks, patternInput_5[2]);
-                    lineNumber_1_mut = patternInput_5[1];
-                    continue loop;
-                }
-                default:
-                    return [k_12, lineNumber_1, remarks, fromParts(studyInfo, designDescriptors, publications, factors, assays, protocols, contacts)];
-            }
-            break;
-        }
-    };
-    const patternInput_6 = StudyInfo_fromRows(lineNumber, en);
-    return loop(patternInput_6[0], patternInput_6[3], empty(), empty(), empty(), empty(), empty(), empty(), patternInput_6[2], patternInput_6[1]);
-}
-
-export function toRows(study, assays) {
-    const protocols = ofSeq(collect(ARCtrl_ArcTable__ArcTable_GetProtocols, study.Tables));
-    const factors = ofSeq(collect((f) => getFactors(ARCtrl_ArcTable__ArcTable_GetProcesses(f)), study.Tables));
-    const assays_1 = defaultArg(assays, ofSeq(study.GetRegisteredAssaysOrIdentifier()));
-    return delay(() => append_1(StudyInfo_toRows_1680536E(study), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY DESIGN DESCRIPTORS"])), delay(() => append_1(toRows_1("Study Design", ofSeq(study.StudyDesignDescriptors)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY PUBLICATIONS"])), delay(() => append_1(toRows_2("Study Publication", ofSeq(study.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY FACTORS"])), delay(() => append_1(toRows_3("Study Factor", factors), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY ASSAYS"])), delay(() => append_1(toRows_4("Study Assay", assays_1), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY PROTOCOLS"])), delay(() => append_1(toRows_5("Study Protocol", protocols), delay(() => append_1(singleton(SparseRowModule_fromValues(["STUDY CONTACTS"])), delay(() => toRows_6("Study Person", ofSeq(study.Contacts)))))))))))))))))))))))))));
-}
-

package/Spreadsheet/Template.js

@@ -1,361 +0,0 @@
-import { toString, Record, FSharpException } from "../fable_modules/fable-library-js.4.24.0/Types.js";
-import { record_type, list_type, string_type, class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
-import { ofSeq, append as append_1, reverse, map, empty, ofArray } from "../fable_modules/fable-library-js.4.24.0/List.js";
-import { toRows, fromRows, toSparseTable, fromSparseTable } from "./Metadata/OntologyAnnotation.js";
-import { Comment$_$reflection } from "../Core/Comment.js";
-import { Comment_fromString } from "./Metadata/Comment.js";
-import { SparseRowModule_fromAllValues, SparseRowModule_getAllValues, SparseRowModule_fromFsRow, SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_tryGetValueAt, SparseTable_ToRows_759CAFC1, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./Metadata/SparseTable.js";
-import { createMissingIdentifier } from "../Core/Helper/Identifier.js";
-import { addToDict } from "../fable_modules/fable-library-js.4.24.0/MapUtil.js";
-import { List_distinct } from "../fable_modules/fable-library-js.4.24.0/Seq2.js";
-import { getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.24.0/Util.js";
-import { tryPick, iterateIndexed, tryFind, toList, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library-js.4.24.0/Seq.js";
-import { Person_orcidKey } from "../Core/Conversion.js";
-import { toArray } from "../fable_modules/fable-library-js.4.24.0/Option.js";
-import { toRows as toRows_1, fromRows as fromRows_1 } from "./Metadata/Contacts.js";
-import { parse } from "../fable_modules/fable-library-js.4.24.0/Guid.js";
-import { Template, Organisation } from "../Core/Template.js";
-import { FsWorksheet } from "../fable_modules/FsSpreadsheet.6.3.1/FsWorksheet.fs.js";
-import { printf, toConsole } from "../fable_modules/fable-library-js.4.24.0/String.js";
-import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
-import { now } from "../fable_modules/fable-library-js.4.24.0/Date.js";
-import { FsWorkbook } from "../fable_modules/FsSpreadsheet.6.3.1/FsWorkbook.fs.js";
-
-export class TemplateReadError extends FSharpException {
-    constructor(Data0) {
-        super();
-        this.Data0 = Data0;
-    }
-}
-
-export function TemplateReadError_$reflection() {
-    return class_type("ARCtrl.Spreadsheet.TemplateReadError", undefined, TemplateReadError, class_type("System.Exception"));
-}
-
-export const Metadata_ER_labels = ofArray(["ER", "ER Term Accession Number", "ER Term Source REF"]);
-
-export function Metadata_ER_fromSparseTable(matrix) {
-    return fromSparseTable("ER", "ER Term Source REF", "ER Term Accession Number", matrix);
-}
-
-export function Metadata_ER_toSparseTable(designs) {
-    return toSparseTable("ER", "ER Term Source REF", "ER Term Accession Number", designs);
-}
-
-export function Metadata_ER_fromRows(prefix, rows) {
-    const patternInput = fromRows(prefix, "ER", "ER Term Source REF", "ER Term Accession Number", 0, rows);
-    return [patternInput[0], patternInput[3]];
-}
-
-export function Metadata_ER_toRows(prefix, designs) {
-    return toRows(prefix, "ER", "ER Term Source REF", "ER Term Accession Number", designs);
-}
-
-export const Metadata_Tags_labels = ofArray(["Tags", "Tags Term Accession Number", "Tags Term Source REF"]);
-
-export function Metadata_Tags_fromSparseTable(matrix) {
-    return fromSparseTable("Tags", "Tags Term Source REF", "Tags Term Accession Number", matrix);
-}
-
-export function Metadata_Tags_toSparseTable(designs) {
-    return toSparseTable("Tags", "Tags Term Source REF", "Tags Term Accession Number", designs);
-}
-
-export function Metadata_Tags_fromRows(prefix, rows) {
-    const patternInput = fromRows(prefix, "Tags", "Tags Term Source REF", "Tags Term Accession Number", 0, rows);
-    return [patternInput[0], patternInput[3]];
-}
-
-export function Metadata_Tags_toRows(prefix, designs) {
-    return toRows(prefix, "Tags", "Tags Term Source REF", "Tags Term Accession Number", designs);
-}
-
-export class Metadata_Template_TemplateInfo extends Record {
-    constructor(Id, Name, Version, Description, Organisation, Table, Comments) {
-        super();
-        this.Id = Id;
-        this.Name = Name;
-        this.Version = Version;
-        this.Description = Description;
-        this.Organisation = Organisation;
-        this.Table = Table;
-        this.Comments = Comments;
-    }
-}
-
-export function Metadata_Template_TemplateInfo_$reflection() {
-    return record_type("ARCtrl.Spreadsheet.Metadata.Template.TemplateInfo", [], Metadata_Template_TemplateInfo, () => [["Id", string_type], ["Name", string_type], ["Version", string_type], ["Description", string_type], ["Organisation", string_type], ["Table", string_type], ["Comments", list_type(Comment$_$reflection())]]);
-}
-
-export function Metadata_Template_TemplateInfo_create(id, name, version, description, organisation, table, comments) {
-    return new Metadata_Template_TemplateInfo(id, name, version, description, organisation, table, comments);
-}
-
-export function Metadata_Template_TemplateInfo_get_empty() {
-    return Metadata_Template_TemplateInfo_create("", "", "", "", "", "", empty());
-}
-
-export function Metadata_Template_TemplateInfo_get_Labels() {
-    return ofArray(["Id", "Name", "Version", "Description", "Organisation", "Table"]);
-}
-
-export function Metadata_Template_TemplateInfo_FromSparseTable_3ECCA699(matrix) {
-    const comments = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
-    return Metadata_Template_TemplateInfo_create(SparseTable__TryGetValueDefault_5BAE6133(matrix, createMissingIdentifier(), ["Id", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Name", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Version", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Description", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Organisation", 0]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", ["Table", 0]), comments);
-}
-
-export function Metadata_Template_TemplateInfo_ToSparseTable_48C39BE1(template) {
-    let copyOfStruct, copyOfStruct_1;
-    const matrix = SparseTable_Create_Z2192E64B(undefined, Metadata_Template_TemplateInfo_get_Labels(), undefined, 2);
-    let commentKeys = empty();
-    addToDict(matrix.Matrix, ["Id", 1], ((copyOfStruct = template.Id, copyOfStruct)).startsWith("MISSING_IDENTIFIER_") ? "" : ((copyOfStruct_1 = template.Id, copyOfStruct_1)));
-    addToDict(matrix.Matrix, ["Name", 1], template.Name);
-    addToDict(matrix.Matrix, ["Version", 1], template.Version);
-    addToDict(matrix.Matrix, ["Description", 1], template.Description);
-    addToDict(matrix.Matrix, ["Organisation", 1], toString(template.Organisation));
-    addToDict(matrix.Matrix, ["Table", 1], template.Table.Name);
-    return new SparseTable(matrix.Matrix, matrix.Keys, reverse(List_distinct(commentKeys, {
-        Equals: (x, y) => (x === y),
-        GetHashCode: stringHash,
-    })), matrix.ColumnCount);
-}
-
-export function Metadata_Template_TemplateInfo_fromRows_9F97F2A(rows) {
-    const tupledArg = SparseTable_FromRows_Z5579EC29(rows, Metadata_Template_TemplateInfo_get_Labels(), 0);
-    return [tupledArg[0], Metadata_Template_TemplateInfo_FromSparseTable_3ECCA699(tupledArg[3])];
-}
-
-export function Metadata_Template_TemplateInfo_toRows_48C39BE1(template) {
-    return SparseTable_ToRows_759CAFC1(Metadata_Template_TemplateInfo_ToSparseTable_48C39BE1(template));
-}
-
-export function Metadata_Template_mapDeprecatedKeys(rows) {
-    const s = map_1((r) => map_1((tupledArg) => {
-        const k = tupledArg[0] | 0;
-        const v = tupledArg[1];
-        if (k === 0) {
-            switch (v) {
-                case "#AUTHORS list":
-                    return [k, "AUTHORS"];
-                case "#ER list":
-                    return [k, "ERS"];
-                case "#TAGS list":
-                    return [k, "TAGS"];
-                case "Authors ORCID":
-                    return [k, `Comment[${Person_orcidKey}]`];
-                case "Authors Last Name":
-                    return [k, "Author Last Name"];
-                case "Authors First Name":
-                    return [k, "Author First Name"];
-                case "Authors Mid Initials":
-                    return [k, "Author Mid Initials"];
-                case "Authors Email":
-                    return [k, "Author Email"];
-                case "Authors Phone":
-                    return [k, "Author Phone"];
-                case "Authors Fax":
-                    return [k, "Author Fax"];
-                case "Authors Address":
-                    return [k, "Author Address"];
-                case "Authors Affiliation":
-                    return [k, "Author Affiliation"];
-                case "Authors Role":
-                    return [k, "Author Roles"];
-                case "Authors Role Term Accession Number":
-                    return [k, "Author Roles Term Accession Number"];
-                case "Authors Role Term Source REF":
-                    return [k, "Author Roles Term Source REF"];
-                default:
-                    return [k, v];
-            }
-        }
-        else {
-            return [k, v];
-        }
-    }, r), rows);
-    if (exists((v_32) => (v_32 === "TEMPLATE"), toArray(SparseRowModule_tryGetValueAt(0, head(s))))) {
-        return s;
-    }
-    else {
-        return append(singleton(SparseRowModule_fromValues(["TEMPLATE"])), s);
-    }
-}
-
-export function Metadata_Template_fromRows(rows) {
-    const loop = (en_mut, lastLine_mut, templateInfo_mut, ers_mut, tags_mut, authors_mut) => {
-        loop:
-        while (true) {
-            const en = en_mut, lastLine = lastLine_mut, templateInfo = templateInfo_mut, ers = ers_mut, tags = tags_mut, authors = authors_mut;
-            let matchResult, k_3, k_4, k_5, k_6;
-            if (lastLine != null) {
-                switch (lastLine) {
-                    case "ERS": {
-                        matchResult = 0;
-                        k_3 = lastLine;
-                        break;
-                    }
-                    case "TAGS": {
-                        matchResult = 1;
-                        k_4 = lastLine;
-                        break;
-                    }
-                    case "AUTHORS": {
-                        matchResult = 2;
-                        k_5 = lastLine;
-                        break;
-                    }
-                    default: {
-                        matchResult = 3;
-                        k_6 = lastLine;
-                    }
-                }
-            }
-            else {
-                matchResult = 3;
-                k_6 = lastLine;
-            }
-            switch (matchResult) {
-                case 0: {
-                    const patternInput = Metadata_ER_fromRows(undefined, en);
-                    en_mut = en;
-                    lastLine_mut = patternInput[0];
-                    templateInfo_mut = templateInfo;
-                    ers_mut = append_1(ers, patternInput[1]);
-                    tags_mut = tags;
-                    authors_mut = authors;
-                    continue loop;
-                }
-                case 1: {
-                    const patternInput_1 = Metadata_Tags_fromRows(undefined, en);
-                    en_mut = en;
-                    lastLine_mut = patternInput_1[0];
-                    templateInfo_mut = templateInfo;
-                    ers_mut = ers;
-                    tags_mut = append_1(tags, patternInput_1[1]);
-                    authors_mut = authors;
-                    continue loop;
-                }
-                case 2: {
-                    const patternInput_2 = fromRows_1("Author", 0, en);
-                    en_mut = en;
-                    lastLine_mut = patternInput_2[0];
-                    templateInfo_mut = templateInfo;
-                    ers_mut = ers;
-                    tags_mut = tags;
-                    authors_mut = append_1(authors, patternInput_2[3]);
-                    continue loop;
-                }
-                default:
-                    return [templateInfo, ers, tags, authors];
-            }
-            break;
-        }
-    };
-    const en_1 = getEnumerator(Metadata_Template_mapDeprecatedKeys(rows));
-    en_1["System.Collections.IEnumerator.MoveNext"]();
-    const patternInput_3 = Metadata_Template_TemplateInfo_fromRows_9F97F2A(en_1);
-    return loop(en_1, patternInput_3[0], patternInput_3[1], empty(), empty(), empty());
-}
-
-export function Metadata_Template_toRows(template) {
-    return delay(() => append(singleton(SparseRowModule_fromValues(["TEMPLATE"])), delay(() => append(Metadata_Template_TemplateInfo_toRows_48C39BE1(template), delay(() => append(singleton(SparseRowModule_fromValues(["ERS"])), delay(() => append(Metadata_ER_toRows(undefined, toList(template.EndpointRepositories)), delay(() => append(singleton(SparseRowModule_fromValues(["TAGS"])), delay(() => append(Metadata_Tags_toRows(undefined, toList(template.Tags)), delay(() => append(singleton(SparseRowModule_fromValues(["AUTHORS"])), delay(() => toRows_1("Author", ofSeq(template.Authors)))))))))))))))));
-}
-
-export const Template_metadataSheetName = "isa_template";
-
-export const Template_obsoleteMetadataSheetName = "SwateTemplateMetadata";
-
-export function Template_fromParts(templateInfo, ers, tags, authors, table, lastUpdated) {
-    const id = parse(templateInfo.Id);
-    const organisation = Organisation.ofString(templateInfo.Organisation);
-    const authors_1 = Array.from(authors);
-    const repos = Array.from(ers);
-    const tags_1 = Array.from(tags);
-    return Template.make(id, table, templateInfo.Name, templateInfo.Description, organisation, templateInfo.Version, authors_1, repos, tags_1, lastUpdated);
-}
-
-export function Template_isMetadataSheetName(name) {
-    if (name === Template_metadataSheetName) {
-        return true;
-    }
-    else {
-        return name === Template_obsoleteMetadataSheetName;
-    }
-}
-
-export function Template_isMetadataSheet(sheet) {
-    return Template_isMetadataSheetName(sheet.Name);
-}
-
-export function Template_tryGetMetadataSheet(doc) {
-    return tryFind(Template_isMetadataSheet, doc.GetWorksheets());
-}
-
-export function Template_toMetadataSheet(template) {
-    const sheet = new FsWorksheet(Template_metadataSheetName);
-    iterateIndexed((rowI, r) => {
-        SparseRowModule_writeToSheet(rowI + 1, r, sheet);
-    }, Metadata_Template_toRows(template));
-    return sheet;
-}
-
-export function Template_fromMetadataSheet(sheet) {
-    return Metadata_Template_fromRows(map_1(SparseRowModule_fromFsRow, sheet.Rows));
-}
-
-export function Template_toMetadataCollection(template) {
-    return map_1(SparseRowModule_getAllValues, Metadata_Template_toRows(template));
-}
-
-export function Template_fromMetadataCollection(collection) {
-    return Metadata_Template_fromRows(map_1(SparseRowModule_fromAllValues, collection));
-}
-
-/**
- * Reads an assay from a spreadsheet
- */
-export function Template_fromFsWorkbook(doc) {
-    let matchValue_1, matchValue_3, ws_3, matchValue_4, ws_2, matchValue_2;
-    let patternInput;
-    const matchValue = Template_tryGetMetadataSheet(doc);
-    if (matchValue == null) {
-        toConsole(printf("Could not find metadata sheet with sheetname \"isa_template\" or deprecated sheetname \"Template\""));
-        patternInput = [Metadata_Template_TemplateInfo_get_empty(), empty(), empty(), empty()];
-    }
-    else {
-        patternInput = Template_fromMetadataSheet(matchValue);
-    }
-    const templateInfo = patternInput[0];
-    const sheets = doc.GetWorksheets();
-    return Template_fromParts(templateInfo, patternInput[1], patternInput[2], patternInput[3], (matchValue_1 = tryPick((ws) => {
-        if (exists((t) => (t.Name === templateInfo.Table), ws.Tables)) {
-            return ws;
-        }
-        else {
-            return undefined;
-        }
-    }, sheets), (matchValue_1 == null) ? ((matchValue_3 = tryPick((ws_1) => {
-        if (ws_1.Name === templateInfo.Table) {
-            return ws_1;
-        }
-        else {
-            return undefined;
-        }
-    }, sheets), (matchValue_3 == null) ? (() => {
-        throw new TemplateReadError(`No worksheet or table with name \`${templateInfo.Table}\` found`);
-    })() : ((ws_3 = matchValue_3, (matchValue_4 = tryFromFsWorksheet(ws_3), (matchValue_4 == null) ? (() => {
-        throw new TemplateReadError(`Ws with name \`${ws_3.Name}\` could not be converted to a table`);
-    })() : matchValue_4))))) : ((ws_2 = matchValue_1, (matchValue_2 = tryFromFsWorksheet(ws_2), (matchValue_2 == null) ? (() => {
-        throw new TemplateReadError(`Ws with name \`${ws_2.Name}\` could not be converted to a table`);
-    })() : matchValue_2)))), now());
-}
-
-export function Template_toFsWorkbook(template) {
-    const doc = new FsWorkbook();
-    const metaDataSheet = Template_toMetadataSheet(template);
-    doc.AddWorksheet(metaDataSheet);
-    const sheet = toFsWorksheet(undefined, template.Table);
-    doc.AddWorksheet(sheet);
-    return doc;
-}
-

package/Template.Web.js

@@ -1,27 +0,0 @@
-import { defaultArg } from "./fable_modules/fable-library-js.4.24.0/Option.js";
-import { singleton } from "./fable_modules/fable-library-js.4.24.0/AsyncBuilder.js";
-import { downloadFile } from "./WebRequest/WebRequest.js";
-import { Templates_fromJsonString } from "./JsonIO/Table/Templates.js";
-import { startAsPromise } from "./fable_modules/fable-library-js.4.24.0/Async.js";
-import { class_type } from "./fable_modules/fable-library-js.4.24.0/Reflection.js";
-
-export function getTemplates(url) {
-    const url_1 = defaultArg(url, "https://github.com/nfdi4plants/Swate-templates/releases/download/latest/templates_v2.0.0.json");
-    return singleton.Delay(() => singleton.Bind(downloadFile(url_1), (_arg) => {
-        const mapResult = Templates_fromJsonString(_arg);
-        return singleton.Return(mapResult);
-    }));
-}
-
-export class WebController {
-    constructor() {
-    }
-    static getTemplates(url) {
-        return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(_arg))));
-    }
-}
-
-export function WebController_$reflection() {
-    return class_type("ARCtrl.Template.Web.WebController", undefined, WebController);
-}
-