@morscherlab/mint-sdk 1.2.10 → 1.3.0-beta.10

package/src/templates/instrumentRunAdapters.ts

@@ -22,6 +22,7 @@ import {
   instrumentRunStepType,
 } from './instrumentRunAdapterHelpers'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toInstrumentRunRows(
   template: InstrumentRunTemplate | InstrumentRunTemplateData
 ): InstrumentRunRowsAdapterResult {
@@ -51,6 +52,7 @@ export function toInstrumentRunRows(
     })
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toInstrumentRunColumns(): InstrumentRunColumnsAdapterResult {
   return [
     { key: 'order', label: 'Order', sortable: true, align: 'right' },
@@ -67,6 +69,7 @@ export function toInstrumentRunColumns(): InstrumentRunColumnsAdapterResult {
   ]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toInstrumentRunDataFrame(
   template: InstrumentRunTemplate | InstrumentRunTemplateData
 ): InstrumentRunDataFrameAdapterResult {
@@ -77,7 +80,11 @@ export function toInstrumentRunDataFrame(
   }
 }
 
-/** Convert an instrument-run template into ExperimentTimeline protocol steps for acquisition queue previews. */
+/**
+ * Convert an instrument-run template into ExperimentTimeline protocol steps for acquisition queue previews.
+ *
+ * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
+ */
 export function toInstrumentRunSteps(
   template: InstrumentRunTemplate | InstrumentRunTemplateData
 ): InstrumentRunStepsAdapterResult {
@@ -119,7 +126,11 @@ export function toInstrumentRunSteps(
     })
 }
 
-/** Convert an instrument-run template into readonly ScheduleCalendar events ordered by run queue timing. */
+/**
+ * Convert an instrument-run template into readonly ScheduleCalendar events ordered by run queue timing.
+ *
+ * @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins.
+ */
 export function toInstrumentRunScheduleEvents(
   template: InstrumentRunTemplate | InstrumentRunTemplateData
 ): InstrumentRunScheduleEventsAdapterResult {

package/src/templates/instrumentRunBuilder.ts

@@ -12,6 +12,7 @@ import type {
   InstrumentRunTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createInstrumentRunTemplate(
   options: CreateInstrumentRunTemplateOptions
 ): InstrumentRunTemplate {

package/src/templates/lcmsBatchCollectionBuilder.ts

@@ -8,6 +8,7 @@ import type {
   TemplateCollectionEnvelope,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createLcmsBatchCollection(
   options: CreateLcmsBatchCollectionOptions = {}
 ): TemplateCollectionEnvelope {

package/src/templates/packs.ts

@@ -127,12 +127,15 @@ const bioTemplatePackDefinitions = [
   },
 ] as const satisfies readonly BioTemplatePackDefinition[]
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export const bioTemplatePacks = bioTemplatePackDefinitions.map(createPack) as readonly BioTemplatePackEntry[]
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function listBioTemplatePacks(): readonly BioTemplatePackEntry[] {
   return bioTemplatePacks
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function getBioTemplatePackInfo(name: string): BioTemplatePackEntry | undefined {
   return bioTemplatePacks.find(entry => {
     const identifiers = [
@@ -144,6 +147,7 @@ export function getBioTemplatePackInfo(name: string): BioTemplatePackEntry | und
   })
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function searchBioTemplatePacks(query: string): readonly BioTemplatePackEntry[] {
   const normalized = query.trim().toLowerCase()
   if (!normalized) return bioTemplatePacks

package/src/templates/plateMapAdapters.ts

@@ -10,6 +10,7 @@ import type {
   WellMapAdapterResult,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toPlateMapEditorState(
   template: PlateMapTemplate | PlateMapTemplateData
 ): PlateMapEditorAdapterResult {
@@ -25,6 +26,7 @@ export function toPlateMapEditorState(
   } satisfies PlateMapEditorState
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toWellPlateWells(
   template: PlateMapTemplate | PlateMapTemplateData,
   plateId?: string

package/src/templates/plateMapBuilder.ts

@@ -7,6 +7,7 @@ import type {
   TemplateSample,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createPlateMapTemplate(
   options: CreatePlateMapTemplateOptions = {}
 ): PlateMapTemplate {

package/src/templates/presets.ts

@@ -16,6 +16,7 @@ export interface BioTemplatePresetEntry {
   components: readonly string[]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export const bioTemplatePresets = [
   {
     name: 'wellplate-screen',
@@ -36,7 +37,7 @@ export const bioTemplatePresets = [
     python_example: 'create_wellplate_screen_collection(samples=["Control", "Treatment"], compounds={"Drug A": [10, 1, 0.1]}, unit="uM")',
     frontend_import: "import { createWellPlateScreenCollection, toPlateMapEditorState, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'",
     frontend_adapters: ['toPlateMapEditorState', 'toTemplateDataFrame', 'toDoseConditions'],
-    components: ['PlateMapEditor', 'WellPlate', 'DataFrame', 'DoseCalculator'],
+    components: ['PlateEditor', 'WellPlate', 'DataFrame', 'DoseCalculator'],
   },
   {
     name: 'qpcr-expression',
@@ -108,7 +109,7 @@ export const bioTemplatePresets = [
     python_example: 'create_elisa_assay_collection(samples=["Control", "Treatment"], analyte="IL-6", standard_concentrations=[1000, 100, 10, 1], unit="pg/mL")',
     frontend_import: "import { createElisaAssayCollection, toPlateMapEditorState, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'",
     frontend_adapters: ['toPlateMapEditorState', 'toTemplateDataFrame', 'toCalibrationCurveDataFrame'],
-    components: ['PlateMapEditor', 'WellPlate', 'DataFrame', 'FitPanel', 'ChartContainer'],
+    components: ['PlateEditor', 'WellPlate', 'DataFrame', 'FitPanel', 'ChartContainer'],
   },
   {
     name: 'flow-cytometry-assay',
@@ -145,10 +146,12 @@ export const bioTemplatePresets = [
   },
 ] as const satisfies readonly BioTemplatePresetEntry[]
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function listBioTemplatePresets(): readonly BioTemplatePresetEntry[] {
   return bioTemplatePresets
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function getBioTemplatePresetInfo(name: string): BioTemplatePresetEntry | undefined {
   return bioTemplatePresets.find(entry => {
     const identifiers = [
@@ -160,6 +163,7 @@ export function getBioTemplatePresetInfo(name: string): BioTemplatePresetEntry |
   })
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function searchBioTemplatePresets(query: string): readonly BioTemplatePresetEntry[] {
   const normalized = query.trim().toLowerCase()
   if (!normalized) return bioTemplatePresets

package/src/templates/protocolAdapters.ts

@@ -9,6 +9,7 @@ import type {
   ProtocolStepsTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toProtocolSteps(
   template: ProtocolStepsTemplate | ProtocolStepsTemplateData
 ): ProtocolStepsAdapterResult {
@@ -28,6 +29,7 @@ export function toProtocolSteps(
     }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toProtocolRows(
   template: ProtocolStepsTemplate | ProtocolStepsTemplateData
 ): ProtocolRowsAdapterResult {
@@ -47,6 +49,7 @@ export function toProtocolRows(
     }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toProtocolColumns(): ProtocolColumnsAdapterResult {
   return [
     { key: 'order', label: 'Order', sortable: true, align: 'right' },
@@ -58,6 +61,7 @@ export function toProtocolColumns(): ProtocolColumnsAdapterResult {
   ]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toProtocolDataFrame(
   template: ProtocolStepsTemplate | ProtocolStepsTemplateData
 ): ProtocolDataFrameAdapterResult {

package/src/templates/protocolStepsBuilder.ts

@@ -9,6 +9,7 @@ import type {
   ProtocolStepsTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createProtocolStepsTemplate(
   options: CreateProtocolStepsTemplateOptions
 ): ProtocolStepsTemplate {

package/src/templates/qpcrAdapters.ts

@@ -10,6 +10,7 @@ import type {
   QpcrWellMapAdapterResult,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toQpcrRows(
   template: QpcrPlateTemplate | QpcrPlateTemplateData
 ): QpcrRowsAdapterResult {
@@ -41,6 +42,7 @@ export function toQpcrRows(
   })
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toQpcrColumns(): QpcrColumnsAdapterResult {
   return [
     { key: 'wellId', label: 'Well', sortable: true },
@@ -55,6 +57,7 @@ export function toQpcrColumns(): QpcrColumnsAdapterResult {
   ]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toQpcrDataFrame(
   template: QpcrPlateTemplate | QpcrPlateTemplateData
 ): QpcrDataFrameAdapterResult {
@@ -65,6 +68,7 @@ export function toQpcrDataFrame(
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toQpcrWellPlateWells(
   template: QpcrPlateTemplate | QpcrPlateTemplateData
 ): QpcrWellMapAdapterResult {

package/src/templates/qpcrExpressionCollectionBuilder.ts

@@ -7,6 +7,7 @@ import type {
   TemplateCollectionEnvelope,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createQpcrExpressionCollection(
   options: CreateQpcrExpressionCollectionOptions = {}
 ): TemplateCollectionEnvelope {

package/src/templates/qpcrPlateBuilder.ts

@@ -15,6 +15,7 @@ import type {
   QpcrTarget,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createQpcrPlateTemplate(
   options: CreateQpcrPlateTemplateOptions
 ): QpcrPlateTemplate {

package/src/templates/reagentAdapters.ts

@@ -9,6 +9,7 @@ import type {
   ReagentRowsAdapterResult,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toReagentListItems(
   template: ReagentListTemplate | ReagentListTemplateData
 ): ReagentListItemsAdapterResult {
@@ -29,6 +30,7 @@ export function toReagentListItems(
   }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toReagentRows(
   template: ReagentListTemplate | ReagentListTemplateData
 ): ReagentRowsAdapterResult {
@@ -51,6 +53,7 @@ export function toReagentRows(
   }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toReagentColumns(): ReagentColumnsAdapterResult {
   return [
     { key: 'name', label: 'Name', sortable: true },
@@ -66,6 +69,7 @@ export function toReagentColumns(): ReagentColumnsAdapterResult {
   ]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toReagentDataFrame(
   template: ReagentListTemplate | ReagentListTemplateData
 ): ReagentDataFrameAdapterResult {

package/src/templates/reagentListBuilder.ts

@@ -9,6 +9,7 @@ import type {
   ReagentRecord,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createReagentListTemplate(
   options: CreateReagentListTemplateOptions
 ): ReagentListTemplate {

package/src/templates/samplePrepAdapters.ts

@@ -8,6 +8,7 @@ import type {
   SamplePrepTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSamplePrepRows(
   template: SamplePrepTemplate | SamplePrepTemplateData
 ): SamplePrepRowsAdapterResult {
@@ -35,6 +36,7 @@ export function toSamplePrepRows(
     }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSamplePrepColumns(): SamplePrepColumnsAdapterResult {
   return [
     { key: 'order', label: 'Order', sortable: true, align: 'right' },
@@ -52,6 +54,7 @@ export function toSamplePrepColumns(): SamplePrepColumnsAdapterResult {
   ]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSamplePrepDataFrame(
   template: SamplePrepTemplate | SamplePrepTemplateData
 ): SamplePrepDataFrameAdapterResult {

package/src/templates/samplePrepBuilder.ts

@@ -9,6 +9,7 @@ import type {
   SamplePrepTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createSamplePrepTemplate(
   options: CreateSamplePrepTemplateOptions
 ): SamplePrepTemplate {

package/src/templates/sampleSheetAdapters.ts

@@ -13,6 +13,7 @@ import type {
   SampleSheetTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSampleRows(
   template: SampleSheetTemplate | SampleSheetTemplateData
 ): SampleRowsAdapterResult {
@@ -30,6 +31,7 @@ export function toSampleRows(
   }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSampleColumns(
   template: SampleSheetTemplate | SampleSheetTemplateData
 ): SampleColumnsAdapterResult {
@@ -43,6 +45,7 @@ export function toSampleColumns(
   }))
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSampleDataFrame(
   template: SampleSheetTemplate | SampleSheetTemplateData
 ): SampleDataFrameAdapterResult {
@@ -53,6 +56,7 @@ export function toSampleDataFrame(
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toSampleOptions(
   template: SampleSheetTemplate | SampleSheetTemplateData
 ): SampleOptionsAdapterResult {

package/src/templates/sampleSheetBuilder.ts

@@ -7,6 +7,7 @@ import type {
   SampleSheetTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createSampleSheetTemplate(
   options: CreateSampleSheetTemplateOptions
 ): SampleSheetTemplate {

package/src/templates/targetedMetabolomicsCollectionBuilder.ts

@@ -17,6 +17,7 @@ import type {
   TemplateCollectionEnvelope,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createTargetedMetabolomicsCollection(
   options: CreateTargetedMetabolomicsCollectionOptions = {}
 ): TemplateCollectionEnvelope {

package/src/templates/templateEnvelopes.ts

@@ -6,8 +6,10 @@ import type {
 } from './types'
 import { isRecord } from './builderReadUtils'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export const TEMPLATE_COLLECTION_KEY = 'templates'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createTemplateEnvelope<TData>(
   templateId: TemplateId,
   data: TData,
@@ -23,6 +25,7 @@ export function createTemplateEnvelope<TData>(
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createTemplateCollection(
   templates: Array<BioTemplateEnvelope<unknown>>,
   metadata?: Record<string, unknown>
@@ -42,6 +45,7 @@ export function createTemplateCollection(
     : { [TEMPLATE_COLLECTION_KEY]: collection, metadata }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function extractTemplateCollection(value: unknown): TemplateCollection {
   if (isEnvelope<unknown>(value)) {
     assertGenericTemplateEnvelope(value)
@@ -72,6 +76,7 @@ export function extractTemplateCollection(value: unknown): TemplateCollection {
   return collection
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function ensureTemplateFromCollection<TTemplate extends BioTemplateEnvelope<unknown>>(
   value: unknown,
   templateId: TemplateId | string
@@ -85,6 +90,7 @@ export function ensureTemplateFromCollection<TTemplate extends BioTemplateEnvelo
   return template as TTemplate
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function assertTemplateEnvelope<TData>(
   value: unknown,
   templateId: TemplateId | string
@@ -95,6 +101,7 @@ export function assertTemplateEnvelope<TData>(
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function ensureTemplateEnvelope<TTemplate extends BioTemplateEnvelope<unknown>>(
   value: unknown,
   templateId: TemplateId | string
@@ -103,6 +110,7 @@ export function ensureTemplateEnvelope<TTemplate extends BioTemplateEnvelope<unk
   return value as TTemplate
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function getTemplateData<TData>(
   template: BioTemplateEnvelope<TData> | TData,
   templateId?: TemplateId | string

package/src/templates/templatePackCollectionBuilder.ts

@@ -7,6 +7,7 @@ import type {
   TemplatePackId,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createBioTemplatePackCollection(
   name: TemplatePackId | string,
   options: CreateBioTemplatePackCollectionOptions = {},

package/src/templates/templatePresetCollectionBuilder.ts

@@ -20,6 +20,7 @@ import type {
   TemplatePresetId,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createBioTemplatePresetCollection(
   name: 'wellplate-screen',
   options?: CreateWellPlateScreenCollectionOptions
@@ -98,6 +99,7 @@ export function createBioTemplatePresetCollection(
   throw new Error(`Unknown template preset '${name}'.`)
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createBioTemplatePresetCollectionFromControls(
   name: 'wellplate-screen',
   values: BioTemplateControlValues

package/src/templates/templateValidators.ts

@@ -14,6 +14,7 @@ import type {
 } from './types'
 import { assertWellInFormat } from '../components/WellPlate.geometry'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validatePlateMapData(data: PlateMapTemplateData): void {
   if (!Array.isArray(data.plates) || data.plates.length === 0) {
     throw new Error('Plate-map template requires at least one plate.')
@@ -34,6 +35,7 @@ export function validatePlateMapData(data: PlateMapTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateSampleSheetData(data: SampleSheetTemplateData): void {
   if (!Array.isArray(data.samples) || data.samples.length === 0) {
     throw new Error('Sample-sheet template requires at least one sample.')
@@ -51,6 +53,7 @@ export function validateSampleSheetData(data: SampleSheetTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateSamplePrepData(data: SamplePrepTemplateData): void {
   if (!data.protocolName) {
     throw new Error('Sample-prep template requires protocolName.')
@@ -91,6 +94,7 @@ export function validateSamplePrepData(data: SamplePrepTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateDoseResponseData(data: DoseResponseTemplateData): void {
   if (!Array.isArray(data.compounds) || data.compounds.length === 0) {
     throw new Error('Dose-response template requires at least one compound.')
@@ -111,6 +115,7 @@ export function validateDoseResponseData(data: DoseResponseTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateCalibrationCurveData(data: CalibrationCurveTemplateData): void {
   if (!data.analyte) {
     throw new Error('Calibration-curve template requires an analyte.')
@@ -173,6 +178,7 @@ export function validateCalibrationCurveData(data: CalibrationCurveTemplateData)
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateTimeCourseData(data: TimeCourseTemplateData): void {
   if (!Array.isArray(data.timepoints) || data.timepoints.length === 0) {
     throw new Error('Time-course template requires at least one time point.')
@@ -202,6 +208,7 @@ export function validateTimeCourseData(data: TimeCourseTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateProtocolStepsData(data: ProtocolStepsTemplateData): void {
   if (!Array.isArray(data.steps) || data.steps.length === 0) {
     throw new Error('Protocol-steps template requires at least one step.')
@@ -230,6 +237,7 @@ export function validateProtocolStepsData(data: ProtocolStepsTemplateData): void
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateAssayMatrixData(data: AssayMatrixTemplateData): void {
   if (!Array.isArray(data.samples) || data.samples.length === 0) {
     throw new Error('Assay-matrix template requires at least one sample.')
@@ -261,6 +269,7 @@ export function validateAssayMatrixData(data: AssayMatrixTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateReagentListData(data: ReagentListTemplateData): void {
   if (!Array.isArray(data.reagents) || data.reagents.length === 0) {
     throw new Error('Reagent-list template requires at least one reagent.')
@@ -282,6 +291,7 @@ export function validateReagentListData(data: ReagentListTemplateData): void {
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateFlowCytometryPanelData(data: FlowCytometryPanelTemplateData): void {
   if (!Array.isArray(data.markers) || data.markers.length === 0) {
     throw new Error('Flow-cytometry panel template requires at least one marker.')
@@ -315,6 +325,7 @@ export function validateFlowCytometryPanelData(data: FlowCytometryPanelTemplateD
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateInstrumentRunData(data: InstrumentRunTemplateData): void {
   if (!Array.isArray(data.methods) || data.methods.length === 0) {
     throw new Error('Instrument-run template requires at least one method.')
@@ -361,6 +372,7 @@ export function validateInstrumentRunData(data: InstrumentRunTemplateData): void
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function validateQpcrPlateData(data: QpcrPlateTemplateData): void {
   if (!Array.isArray(data.samples) || data.samples.length === 0) {
     throw new Error('qPCR plate template requires at least one sample.')

package/src/templates/timeCourseAdapters.ts

@@ -9,6 +9,7 @@ import type {
   TimeCourseTemplateData,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toTimeCourseRows(
   template: TimeCourseTemplate | TimeCourseTemplateData
 ): TimeCourseRowsAdapterResult {
@@ -32,6 +33,7 @@ export function toTimeCourseRows(
   })
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toTimeCourseColumns(): TimeCourseColumnsAdapterResult {
   return [
     { key: 'sampleId', label: 'Sample ID', sortable: true },
@@ -43,6 +45,7 @@ export function toTimeCourseColumns(): TimeCourseColumnsAdapterResult {
   ]
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toTimeCourseDataFrame(
   template: TimeCourseTemplate | TimeCourseTemplateData
 ): TimeCourseDataFrameAdapterResult {
@@ -53,6 +56,7 @@ export function toTimeCourseDataFrame(
   }
 }
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function toTimeCourseSteps(
   template: TimeCourseTemplate | TimeCourseTemplateData
 ): TimeCourseStepsAdapterResult {

package/src/templates/timeCourseBuilder.ts

@@ -17,6 +17,7 @@ import type {
   TimePoint,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createTimeCourseTemplate(
   options: CreateTimeCourseTemplateOptions
 ): TimeCourseTemplate {

package/src/templates/wellPlateScreenCollectionBuilder.ts

@@ -9,6 +9,7 @@ import type {
   TemplateCollectionEnvelope,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createWellPlateScreenCollection(
   options: CreateWellPlateScreenCollectionOptions = {}
 ): TemplateCollectionEnvelope {

package/src/templates/westernBlotAssayCollectionBuilder.ts

@@ -10,6 +10,7 @@ import type {
   TemplateCollectionEnvelope,
 } from './types'
 
+/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
 export function createWesternBlotAssayCollection(
   options: CreateWesternBlotAssayCollectionOptions = {}
 ): TemplateCollectionEnvelope {

package/src/types/auth.ts

@@ -20,40 +20,3 @@ export interface UserInfo {
   roleObj?: RoleInfo | null
   isActive: boolean
 }
-
-// Login response from API
-export interface LoginResponse {
-  access_token: string
-  token_type: string
-  expires_in: number
-}
-
-// Token verification response
-export interface TokenVerifyResponse {
-  valid: boolean
-  username: string | null
-  expires_at: string | null
-}
-
-// Registration request
-export interface RegisterRequest {
-  username: string
-  password: string
-  email?: string
-  shortname?: string
-}
-
-// Profile update request
-export interface UpdateProfileRequest {
-  email?: string
-  shortname?: string
-  current_password?: string
-  new_password?: string
-}
-
-// Passkey credential info
-export interface CredentialInfo {
-  credential_id: string
-  device_name: string | null
-  created_at: string
-}