@morscherlab/mint-sdk 1.2.10 → 1.3.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (841) hide show
  1. package/README.md +45 -137
  2. package/dist/ResourcePickerListInternal-CFAw4vTZ.js +605 -0
  3. package/dist/ResourcePickerListInternal-CFAw4vTZ.js.map +1 -0
  4. package/dist/__stories__/experiment-helpers.d.ts +12 -1
  5. package/dist/__tests__/components/ScientificNumber.test.d.ts +1 -0
  6. package/dist/__tests__/components/SequenceInput.test.d.ts +1 -0
  7. package/dist/__tests__/components/Skeleton.test.d.ts +1 -0
  8. package/dist/__tests__/components/SmartGroupFieldRecipe.test.d.ts +1 -0
  9. package/dist/__tests__/components/SmartGroupModal.test.d.ts +1 -0
  10. package/dist/__tests__/components/StepWizard.test.d.ts +1 -0
  11. package/dist/__tests__/components/TimeRangeInput.test.d.ts +1 -0
  12. package/dist/__tests__/components/UnitInput.test.d.ts +1 -0
  13. package/dist/__tests__/components/WellPlate.keyboard.test.d.ts +1 -0
  14. package/dist/__tests__/components/WellPlate.sampleTypeIndicator.test.d.ts +1 -0
  15. package/dist/__tests__/composables/useChemicalFormula.test.d.ts +1 -0
  16. package/dist/__tests__/composables/useRackEditor.test.d.ts +1 -0
  17. package/dist/__tests__/composables/useSequenceUtils.test.d.ts +1 -0
  18. package/dist/__tests__/styles/baseControlsRules.test.d.ts +1 -0
  19. package/dist/__tests__/styles/controlRefreshRules.test.d.ts +1 -0
  20. package/dist/__tests__/styles/darkModeRules.test.d.ts +1 -0
  21. package/dist/__tests__/styles/menusShellRefresh.test.d.ts +1 -0
  22. package/dist/__tests__/templates/templatesDeprecation.test.d.ts +1 -0
  23. package/dist/__tests__/utils/plotlyTemplate.test.d.ts +1 -0
  24. package/dist/__tests__/utils/sampleTypeMarker.test.d.ts +1 -0
  25. package/dist/{analysisArtifactTypes-DQ0MjwHZ.js → analysisArtifactTypes-Cy3D0Ipg.js} +1 -1
  26. package/dist/{analysisArtifactTypes-DQ0MjwHZ.js.map → analysisArtifactTypes-Cy3D0Ipg.js.map} +1 -1
  27. package/dist/components/ActionMenu.vue.d.ts +17 -5
  28. package/dist/components/AdductText.vue.d.ts +3 -2
  29. package/dist/components/AlertBox.vue.d.ts +11 -14
  30. package/dist/components/AppAvatarMenu.vue.d.ts +18 -28
  31. package/dist/components/AppContainer.vue.d.ts +7 -11
  32. package/dist/components/AppLayout.vue.d.ts +11 -13
  33. package/dist/components/AppSidebar.vue.d.ts +30 -28
  34. package/dist/components/AppToastContainer.vue.d.ts +2 -1
  35. package/dist/components/AppTopBar.vue.d.ts +45 -44
  36. package/dist/components/ArtifactSaveDialog.vue.d.ts +3 -2
  37. package/dist/components/ArtifactSelectorModal.vue.d.ts +5 -6
  38. package/dist/components/AuditTrail.vue.d.ts +17 -18
  39. package/dist/components/AutoGroupModal.vue.d.ts +4 -3
  40. package/dist/components/Avatar.vue.d.ts +2 -1
  41. package/dist/components/BaseButton.vue.d.ts +11 -13
  42. package/dist/components/BaseCheckbox.vue.d.ts +7 -1
  43. package/dist/components/BaseInput.vue.d.ts +15 -2
  44. package/dist/components/BaseModal.vue.d.ts +20 -23
  45. package/dist/components/BasePill.vue.d.ts +10 -13
  46. package/dist/components/BaseRadioGroup.vue.d.ts +2 -1
  47. package/dist/components/BaseSelect.vue.d.ts +3 -2
  48. package/dist/components/BaseSlider.vue.d.ts +18 -1
  49. package/dist/components/BaseTabs.vue.d.ts +2 -1
  50. package/dist/components/BaseTextarea.vue.d.ts +2 -1
  51. package/dist/components/BaseToggle.vue.d.ts +2 -1
  52. package/dist/components/BatchProgressList.vue.d.ts +22 -26
  53. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +7 -14
  54. package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +6 -13
  55. package/dist/components/BioTemplatePresetWorkspaceView.vue.d.ts +7 -14
  56. package/dist/components/BioTemplateRenderer.vue.d.ts +2 -1
  57. package/dist/components/Breadcrumb.vue.d.ts +13 -16
  58. package/dist/components/Calendar.vue.d.ts +21 -23
  59. package/dist/components/ChartContainer.vue.d.ts +19 -25
  60. package/dist/components/ChemicalFormula.vue.d.ts +7 -11
  61. package/dist/components/CollapsibleCard.vue.d.ts +7 -11
  62. package/dist/components/ComponentBindingRenderer.vue.d.ts +2 -1
  63. package/dist/components/ConcentrationInput.vue.d.ts +2 -1
  64. package/dist/components/ConfirmDialog.vue.d.ts +10 -13
  65. package/dist/components/ControlWorkspaceView.vue.d.ts +9 -18
  66. package/dist/components/DataFrame.vue.d.ts +27 -24
  67. package/dist/components/DatePicker.vue.d.ts +3 -6
  68. package/dist/components/DateTimePicker.vue.d.ts +3 -6
  69. package/dist/components/Divider.vue.d.ts +3 -2
  70. package/dist/components/DoseCalculator.vue.d.ts +2 -1
  71. package/dist/components/DoseCalculatorVolumeField.vue.d.ts +2 -1
  72. package/dist/components/DoseDesignWorkspaceView.vue.d.ts +9 -18
  73. package/dist/components/EmptyState.vue.d.ts +9 -12
  74. package/dist/components/ExperimentCodeBadge.vue.d.ts +2 -1
  75. package/dist/components/ExperimentDataViewer.vue.d.ts +13 -15
  76. package/dist/components/ExperimentPopover.vue.d.ts +3 -5
  77. package/dist/components/ExperimentSelectorModal.vue.d.ts +3 -4
  78. package/dist/components/ExperimentTimeline.vue.d.ts +13 -15
  79. package/dist/components/FilePicker.vue.d.ts +10 -5
  80. package/dist/components/FileUploader.vue.d.ts +8 -16
  81. package/dist/components/FitPanel.vue.d.ts +26 -16
  82. package/dist/components/FormActions.vue.d.ts +2 -1
  83. package/dist/components/FormBuilder.vue.d.ts +54 -250
  84. package/dist/components/FormField.vue.d.ts +14 -16
  85. package/dist/components/FormulaInput.vue.d.ts +2 -1
  86. package/dist/components/GeneratedPathInput.vue.d.ts +6 -5
  87. package/dist/components/GeneratedPlotlyResult.vue.d.ts +2 -1
  88. package/dist/components/GeneratedPluginView.vue.d.ts +2 -1
  89. package/dist/components/GeneratedResultRenderer.vue.d.ts +2 -1
  90. package/dist/components/GroupAssigner.vue.d.ts +2 -1
  91. package/dist/components/IconButton.vue.d.ts +7 -11
  92. package/dist/components/InstrumentStateBadge.vue.d.ts +4 -3
  93. package/dist/components/JobsStatusTray.vue.d.ts +13 -29
  94. package/dist/components/LayoutResizeHandle.vue.d.ts +2 -1
  95. package/dist/components/LoadingSpinner.vue.d.ts +2 -1
  96. package/dist/components/MobileSupportGate.vue.d.ts +5 -13
  97. package/dist/components/MoleculeInput.vue.d.ts +3 -4
  98. package/dist/components/MultiSelect.vue.d.ts +2 -1
  99. package/dist/components/NumberInput.vue.d.ts +2 -1
  100. package/dist/components/PlateEditor.vue.d.ts +147 -0
  101. package/dist/components/PlotlyChart.vue.d.ts +21 -31
  102. package/dist/components/PluginIcon.vue.d.ts +2 -1
  103. package/dist/components/PluginWorkspaceView.props.d.ts +2 -6
  104. package/dist/components/PluginWorkspaceView.vue.d.ts +23 -51
  105. package/dist/components/ProgressBar.vue.d.ts +4 -9
  106. package/dist/components/ProtocolStepEditor.vue.d.ts +7 -5
  107. package/dist/components/ProtocolStepParameterField.vue.d.ts +2 -1
  108. package/dist/components/ReagentEditor.vue.d.ts +2 -1
  109. package/dist/components/ReagentList.presentation.d.ts +2 -1
  110. package/dist/components/ReagentList.vue.d.ts +15 -17
  111. package/dist/components/ResourceCard.vue.d.ts +18 -17
  112. package/dist/components/RuntimeUpdateNotice.vue.d.ts +3 -2
  113. package/dist/components/SampleHierarchyTree.vue.d.ts +21 -15
  114. package/dist/components/SampleLegend.vue.d.ts +2 -1
  115. package/dist/components/SampleSelector.vue.d.ts +15 -21
  116. package/dist/components/SampleSelectorGroupNode.vue.d.ts +2 -1
  117. package/dist/components/SampleSelectorSampleRow.vue.d.ts +2 -5
  118. package/dist/components/ScheduleCalendar.vue.d.ts +34 -36
  119. package/dist/components/ScientificNumber.vue.d.ts +3 -2
  120. package/dist/components/SearchableSelect.vue.d.ts +14 -32
  121. package/dist/components/SecretInput.vue.d.ts +2 -1
  122. package/dist/components/SectionCard.vue.d.ts +13 -14
  123. package/dist/components/SegmentedControl.vue.d.ts +2 -1
  124. package/dist/components/SequenceInput.vue.d.ts +10 -21
  125. package/dist/components/SequenceProgressBar.vue.d.ts +2 -1
  126. package/dist/components/SettingsModal.schema.d.ts +1 -1
  127. package/dist/components/SettingsModal.vue.d.ts +28 -25
  128. package/dist/components/Skeleton.vue.d.ts +2 -1
  129. package/dist/components/SmartGroup.types.d.ts +2 -2
  130. package/dist/components/SmartGroupFieldRecipe.groups.d.ts +2 -0
  131. package/dist/components/SmartGroupFieldRecipe.vue.d.ts +4 -7
  132. package/dist/components/SmartGroupManual.vue.d.ts +3 -2
  133. package/dist/components/SmartGroupModal.vue.d.ts +6 -4
  134. package/dist/components/StatusIndicator.vue.d.ts +2 -1
  135. package/dist/components/StepWizard.vue.d.ts +26 -27
  136. package/dist/components/TagsInput.vue.d.ts +3 -5
  137. package/dist/components/ThemeToggle.vue.d.ts +2 -1
  138. package/dist/components/TimePicker.vue.d.ts +6 -6
  139. package/dist/components/TimeRangeInput.vue.d.ts +9 -2
  140. package/dist/components/Tooltip.vue.d.ts +8 -18
  141. package/dist/components/UnitInput.vue.d.ts +2 -1
  142. package/dist/components/WellPlate.colors.d.ts +2 -4
  143. package/dist/components/WellPlate.rendering.d.ts +7 -1
  144. package/dist/components/WellPlate.sampleDrop.d.ts +2 -0
  145. package/dist/components/WellPlate.vue.d.ts +22 -39
  146. package/dist/components/index.d.ts +34 -31
  147. package/dist/components/index.js +5 -8
  148. package/dist/components/internal/ActionItemInternal.vue.d.ts +11 -13
  149. package/dist/components/internal/AppTopBarPageSelectorInternal.vue.d.ts +14 -23
  150. package/dist/components/internal/AppTopBarPillNavInternal.vue.d.ts +2 -1
  151. package/dist/components/internal/CalendarGridPanelInternal.vue.d.ts +2 -1
  152. package/dist/components/internal/DataStateInternal.vue.d.ts +7 -11
  153. package/dist/components/internal/{FilePickerTreeInternal.vue.d.ts → FilePickerListInternal.vue.d.ts} +9 -6
  154. package/dist/components/internal/FilePickerPreviewInternal.vue.d.ts +4 -3
  155. package/dist/components/internal/FormFieldRendererInternal.vue.d.ts +16 -18
  156. package/dist/components/internal/FormSectionRenderer.vue.d.ts +36 -32
  157. package/dist/components/internal/PlateEditorBindingInternal.vue.d.ts +8 -0
  158. package/dist/components/internal/ResourcePickerListInternal.vue.d.ts +65 -0
  159. package/dist/components/internal/SettingsPaneHeadInternal.vue.d.ts +15 -0
  160. package/dist/components/internal/WellEditPopupInternal.vue.d.ts +12 -4
  161. package/dist/components/internal/WorkspaceControlsInternal.vue.d.ts +6 -13
  162. package/dist/components/internal/WorkspaceShellInternal.vue.d.ts +19 -42
  163. package/dist/components/internal/WorkspaceSidebarInternal.vue.d.ts +9 -19
  164. package/dist/components/internal/filePickerPresentation.d.ts +8 -0
  165. package/dist/components/internal/generatedJobsApi.d.ts +9 -0
  166. package/dist/{components-Bbg_gtzF.js → components-GDDvof8D.js} +7088 -5955
  167. package/dist/components-GDDvof8D.js.map +1 -0
  168. package/dist/composables/controlSchemaTypes.d.ts +4 -43
  169. package/dist/composables/createFilePickerAdapter.d.ts +5 -1
  170. package/dist/composables/filePicker/usePickerNavigation.d.ts +7 -2
  171. package/dist/composables/index.d.ts +2 -13
  172. package/dist/composables/index.js +7 -11
  173. package/dist/composables/pluginWorkspaceModel.d.ts +1 -3
  174. package/dist/composables/useAutoGroup.d.ts +10 -0
  175. package/dist/composables/useBioTemplateComponents.d.ts +15 -3
  176. package/dist/composables/useBioTemplateControls.d.ts +5 -1
  177. package/dist/composables/useBioTemplatePackWorkspace.d.ts +2 -0
  178. package/dist/composables/useBioTemplatePresetWorkspace.d.ts +5 -1
  179. package/dist/composables/useBioTemplateWorkspace.d.ts +5 -1
  180. package/dist/composables/useChemicalFormula.d.ts +2 -1
  181. package/dist/composables/useDropdownState.d.ts +5 -0
  182. package/dist/composables/useExperimentSave.d.ts +5 -1
  183. package/dist/composables/useFileBrowser.d.ts +3 -2
  184. package/dist/composables/useFilePicker.d.ts +25 -13
  185. package/dist/composables/useFocusTrap.d.ts +2 -1
  186. package/dist/composables/useGroupAssignment.d.ts +5 -1
  187. package/dist/composables/useJobsStatusTray.d.ts +5 -5
  188. package/dist/composables/useMenuKeyboard.d.ts +3 -3
  189. package/dist/composables/usePlatformContext.d.ts +3 -0
  190. package/dist/composables/usePluginClient.d.ts +1 -1
  191. package/dist/composables/useRackEditor.d.ts +36 -1
  192. package/dist/composables/useSequenceUtils.d.ts +8 -0
  193. package/dist/composables/useTemplateCollection.d.ts +5 -1
  194. package/dist/composables/workspaceRecipes.d.ts +1 -0
  195. package/dist/composables-D6uqp0UF.js +591 -0
  196. package/dist/composables-D6uqp0UF.js.map +1 -0
  197. package/dist/{errors-BLuqMee5.js → experiment-DgllIc3I.js} +89 -333
  198. package/dist/experiment-DgllIc3I.js.map +1 -0
  199. package/dist/{experiment-utils-CV2Wza3z.js → experiment-utils-DTANyVKV.js} +68 -37
  200. package/dist/experiment-utils-DTANyVKV.js.map +1 -0
  201. package/dist/index.d.ts +2 -0
  202. package/dist/index.js +122 -17
  203. package/dist/index.js.map +1 -1
  204. package/dist/install.js +1 -2
  205. package/dist/install.js.map +1 -1
  206. package/dist/instrument.d.ts +6 -0
  207. package/dist/lcms.d.ts +11 -0
  208. package/dist/permissions.d.ts +2 -47
  209. package/dist/permissions.js +2 -26
  210. package/dist/permissions.js.map +1 -1
  211. package/dist/settings-BLr8lzw6.js +341 -0
  212. package/dist/settings-BLr8lzw6.js.map +1 -0
  213. package/dist/stores/auth.d.ts +2 -150
  214. package/dist/stores/experiment.d.ts +2 -106
  215. package/dist/stores/index.js +2 -2
  216. package/dist/stores/settings.d.ts +2 -44
  217. package/dist/styles.css +8608 -6950
  218. package/dist/tailwind.preset.js.map +1 -1
  219. package/dist/templates/adapters.d.ts +3 -0
  220. package/dist/templates/assayMatrixAdapters.d.ts +8 -1
  221. package/dist/templates/assayMatrixBuilder.d.ts +1 -0
  222. package/dist/templates/builderPresetControls.d.ts +1 -0
  223. package/dist/templates/calibrationCurveAdapters.d.ts +3 -0
  224. package/dist/templates/calibrationCurveBuilder.d.ts +1 -0
  225. package/dist/templates/catalog.d.ts +6 -2
  226. package/dist/templates/componentBindings.d.ts +31 -5
  227. package/dist/templates/componentPlateHelpers.d.ts +7 -1
  228. package/dist/templates/controlSchemas.d.ts +9 -0
  229. package/dist/templates/defaultBioTemplateBuilder.d.ts +1 -0
  230. package/dist/templates/doseResponseAdapters.d.ts +2 -0
  231. package/dist/templates/doseResponseBuilder.d.ts +1 -0
  232. package/dist/templates/elisaAssayCollectionBuilder.d.ts +1 -0
  233. package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts +1 -0
  234. package/dist/templates/flowCytometryPanelBuilder.d.ts +1 -0
  235. package/dist/templates/flowPanelAdapters.d.ts +3 -0
  236. package/dist/templates/index.d.ts +1 -1
  237. package/dist/templates/index.js +2 -3
  238. package/dist/templates/instrumentRunAdapters.d.ts +13 -2
  239. package/dist/templates/instrumentRunBuilder.d.ts +1 -0
  240. package/dist/templates/lcmsBatchCollectionBuilder.d.ts +1 -0
  241. package/dist/templates/packs.d.ts +4 -0
  242. package/dist/templates/plateMapAdapters.d.ts +2 -0
  243. package/dist/templates/plateMapBuilder.d.ts +1 -0
  244. package/dist/templates/presets.d.ts +6 -2
  245. package/dist/templates/protocolAdapters.d.ts +4 -0
  246. package/dist/templates/protocolStepsBuilder.d.ts +1 -0
  247. package/dist/templates/qpcrAdapters.d.ts +4 -0
  248. package/dist/templates/qpcrExpressionCollectionBuilder.d.ts +1 -0
  249. package/dist/templates/qpcrPlateBuilder.d.ts +1 -0
  250. package/dist/templates/reagentAdapters.d.ts +4 -0
  251. package/dist/templates/reagentListBuilder.d.ts +1 -0
  252. package/dist/templates/samplePrepAdapters.d.ts +3 -0
  253. package/dist/templates/samplePrepBuilder.d.ts +1 -0
  254. package/dist/templates/sampleSheetAdapters.d.ts +4 -0
  255. package/dist/templates/sampleSheetBuilder.d.ts +1 -0
  256. package/dist/templates/targetedMetabolomicsCollectionBuilder.d.ts +1 -0
  257. package/dist/templates/templateEnvelopes.d.ts +8 -0
  258. package/dist/templates/templatePackCollectionBuilder.d.ts +1 -0
  259. package/dist/templates/templatePresetCollectionBuilder.d.ts +2 -0
  260. package/dist/templates/templateValidators.d.ts +12 -0
  261. package/dist/templates/timeCourseAdapters.d.ts +4 -0
  262. package/dist/templates/timeCourseBuilder.d.ts +1 -0
  263. package/dist/templates/wellPlateScreenCollectionBuilder.d.ts +1 -0
  264. package/dist/templates/westernBlotAssayCollectionBuilder.d.ts +1 -0
  265. package/dist/templates-BU1pet28.js +12304 -0
  266. package/dist/templates-BU1pet28.js.map +1 -0
  267. package/dist/types/auth.d.ts +0 -27
  268. package/dist/types/componentLabTypes.d.ts +14 -7
  269. package/dist/types/componentWorkflowTypes.d.ts +26 -0
  270. package/dist/types/components.d.ts +40 -17
  271. package/dist/types/fileBrowserTypes.d.ts +13 -0
  272. package/dist/types/filePicker.d.ts +19 -1
  273. package/dist/types/generated-ui.d.ts +13 -0
  274. package/dist/types/index.d.ts +4 -4
  275. package/dist/types/index.js +1 -1
  276. package/dist/types/instrument.d.ts +43 -15
  277. package/dist/types/platform.d.ts +2 -0
  278. package/dist/utils/color.d.ts +6 -1
  279. package/dist/utils/formModelSync.d.ts +1 -0
  280. package/dist/utils/plotlyTemplate.d.ts +3 -0
  281. package/dist/utils/rack.d.ts +16 -0
  282. package/dist/utils/sampleTypeMarker.d.ts +23 -0
  283. package/dist/{validation-ChMyixAf.js → validation-Dmp9Q5W0.js} +3032 -838
  284. package/dist/validation-Dmp9Q5W0.js.map +1 -0
  285. package/package.json +17 -23
  286. package/src/__stories__/experiment-helpers.ts +8 -4
  287. package/src/__tests__/components/ActionMenu.test.ts +66 -0
  288. package/src/__tests__/components/AlertBox.test.ts +21 -0
  289. package/src/__tests__/components/AppAvatarMenu.test.ts +25 -0
  290. package/src/__tests__/components/AppTopBar.test.ts +79 -0
  291. package/src/__tests__/components/AppTopBarPageSelector.test.ts +20 -0
  292. package/src/__tests__/components/AppTopBarPillNav.test.ts +74 -0
  293. package/src/__tests__/components/ArtifactSelectorModal.test.ts +20 -6
  294. package/src/__tests__/components/AuditTrail.test.ts +38 -0
  295. package/src/__tests__/components/BaseCheckbox.test.ts +43 -0
  296. package/src/__tests__/components/BaseInput.test.ts +43 -0
  297. package/src/__tests__/components/BaseModal.test.ts +90 -0
  298. package/src/__tests__/components/BaseRadioGroup.test.ts +8 -0
  299. package/src/__tests__/components/BaseSlider.test.ts +116 -0
  300. package/src/__tests__/components/BaseToggle.test.ts +7 -0
  301. package/src/__tests__/components/BatchProgressList.test.ts +22 -14
  302. package/src/__tests__/components/BioTemplateExperimentWorkspaceView.test.ts +4 -4
  303. package/src/__tests__/components/BioTemplatePackWorkspaceView.test.ts +1 -1
  304. package/src/__tests__/components/BioTemplatePresetWorkspaceView.test.ts +8 -8
  305. package/src/__tests__/components/BioTemplateRenderer.test.ts +2 -2
  306. package/src/__tests__/components/Breadcrumb.test.ts +45 -0
  307. package/src/__tests__/components/CalendarGridPanel.test.ts +14 -0
  308. package/src/__tests__/components/ChartContainer.test.ts +23 -0
  309. package/src/__tests__/components/ChemicalFormula.test.ts +15 -0
  310. package/src/__tests__/components/CollapsibleCard.test.ts +12 -9
  311. package/src/__tests__/components/ComponentBindingRenderer.test.ts +45 -17
  312. package/src/__tests__/components/ConcentrationInput.test.ts +17 -2
  313. package/src/__tests__/components/DataFrame.test.ts +107 -4
  314. package/src/__tests__/components/DataStates.test.ts +0 -16
  315. package/src/__tests__/components/DatePicker.test.ts +10 -0
  316. package/src/__tests__/components/DoseCalculator.test.ts +47 -0
  317. package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +37 -34
  318. package/src/__tests__/components/EmptyState.test.ts +16 -1
  319. package/src/__tests__/components/ExperimentSelectorModal.test.ts +31 -3
  320. package/src/__tests__/components/ExperimentTimeline.test.ts +45 -0
  321. package/src/__tests__/components/FilePicker.state.test.ts +2 -2
  322. package/src/__tests__/components/FilePicker.test.ts +360 -13
  323. package/src/__tests__/components/FileUploader.test.ts +15 -0
  324. package/src/__tests__/components/FitPanel.test.ts +96 -0
  325. package/src/__tests__/components/FormulaInput.test.ts +97 -0
  326. package/src/__tests__/components/GeneratedPathInput.test.ts +168 -41
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  688. package/src/templates/reagentAdapters.ts +4 -0
  689. package/src/templates/reagentListBuilder.ts +1 -0
  690. package/src/templates/samplePrepAdapters.ts +3 -0
  691. package/src/templates/samplePrepBuilder.ts +1 -0
  692. package/src/templates/sampleSheetAdapters.ts +4 -0
  693. package/src/templates/sampleSheetBuilder.ts +1 -0
  694. package/src/templates/targetedMetabolomicsCollectionBuilder.ts +1 -0
  695. package/src/templates/templateEnvelopes.ts +8 -0
  696. package/src/templates/templatePackCollectionBuilder.ts +1 -0
  697. package/src/templates/templatePresetCollectionBuilder.ts +2 -0
  698. package/src/templates/templateValidators.ts +12 -0
  699. package/src/templates/timeCourseAdapters.ts +4 -0
  700. package/src/templates/timeCourseBuilder.ts +1 -0
  701. package/src/templates/wellPlateScreenCollectionBuilder.ts +1 -0
  702. package/src/templates/westernBlotAssayCollectionBuilder.ts +1 -0
  703. package/src/types/auth.ts +0 -37
  704. package/src/types/componentLabTypes.ts +16 -13
  705. package/src/types/componentWorkflowTypes.ts +29 -0
  706. package/src/types/components.ts +43 -20
  707. package/src/types/fileBrowserTypes.ts +15 -0
  708. package/src/types/filePicker.ts +19 -1
  709. package/src/types/generated-ui.ts +15 -0
  710. package/src/types/index.ts +12 -11
  711. package/src/types/instrument.ts +47 -15
  712. package/src/types/platform.ts +2 -0
  713. package/src/utils/color.ts +16 -1
  714. package/src/utils/formModelSync.ts +1 -1
  715. package/src/utils/plotlyTemplate.ts +39 -0
  716. package/src/utils/rack.ts +16 -0
  717. package/src/utils/sampleTypeMarker.ts +44 -0
  718. package/dist/ExperimentPopover-CJdNlCZb.js +0 -451
  719. package/dist/ExperimentPopover-CJdNlCZb.js.map +0 -1
  720. package/dist/ExperimentSelectorModal-DHE9k8TP.js +0 -507
  721. package/dist/ExperimentSelectorModal-DHE9k8TP.js.map +0 -1
  722. package/dist/SettingsModal-DELMkUFR.js +0 -492
  723. package/dist/SettingsModal-DELMkUFR.js.map +0 -1
  724. package/dist/Skeleton-jhF9wUkU.js +0 -485
  725. package/dist/Skeleton-jhF9wUkU.js.map +0 -1
  726. package/dist/__tests__/composables/usePluginConfig.test.d.ts +0 -15
  727. package/dist/chunk-BoAXSpZd.js +0 -33
  728. package/dist/components/AppPluginSwitcher.vue.d.ts +0 -40
  729. package/dist/components/ColorSlider.vue.d.ts +0 -34
  730. package/dist/components/DropdownButton.vue.d.ts +0 -49
  731. package/dist/components/FileBrowserModal.vue.d.ts +0 -99
  732. package/dist/components/InstrumentAlertLog.vue.d.ts +0 -22
  733. package/dist/components/InstrumentStatusCard.vue.d.ts +0 -13
  734. package/dist/components/LcmsSequenceTable.vue.d.ts +0 -54
  735. package/dist/components/PlateMapEditor.vue.d.ts +0 -50
  736. package/dist/components/RackEditor.vue.d.ts +0 -78
  737. package/dist/components/fileBrowserPresentation.d.ts +0 -10
  738. package/dist/components/internal/FileBrowserDialogInternal.vue.d.ts +0 -34
  739. package/dist/components/internal/FileBrowserListingInternal.vue.d.ts +0 -25
  740. package/dist/components/internal/FileBrowserToolbarInternal.vue.d.ts +0 -26
  741. package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +0 -28
  742. package/dist/components-Bbg_gtzF.js.map +0 -1
  743. package/dist/composables/useAsync.d.ts +0 -132
  744. package/dist/composables/useAuth.d.ts +0 -47
  745. package/dist/composables/useCommandHistory.d.ts +0 -33
  746. package/dist/composables/useOptimisticMutation.d.ts +0 -32
  747. package/dist/composables/usePasskey.d.ts +0 -10
  748. package/dist/composables/usePluginConfig.d.ts +0 -27
  749. package/dist/composables/useResourceCrud.d.ts +0 -44
  750. package/dist/composables/useWellPainting.d.ts +0 -39
  751. package/dist/composables/useWellPlateAdapter.d.ts +0 -40
  752. package/dist/composables/useWellPlateEditor.d.ts +0 -33
  753. package/dist/composables/useWellPlateValidation.d.ts +0 -31
  754. package/dist/composables-BCbYb2lA.js +0 -2356
  755. package/dist/composables-BCbYb2lA.js.map +0 -1
  756. package/dist/errors-BLuqMee5.js.map +0 -1
  757. package/dist/experiment-CVDRAnqp.js +0 -90
  758. package/dist/experiment-CVDRAnqp.js.map +0 -1
  759. package/dist/experiment-utils-CV2Wza3z.js.map +0 -1
  760. package/dist/plotly.min-c2Sez60c.js +0 -180634
  761. package/dist/plotly.min-c2Sez60c.js.map +0 -1
  762. package/dist/templates-NuaNHohp.js +0 -5260
  763. package/dist/templates-NuaNHohp.js.map +0 -1
  764. package/dist/useControlSchema-vLiRPUmj.js +0 -7301
  765. package/dist/useControlSchema-vLiRPUmj.js.map +0 -1
  766. package/dist/useDropdownState-C7hRiVQf.js +0 -63
  767. package/dist/useDropdownState-C7hRiVQf.js.map +0 -1
  768. package/dist/useExperimentSelector-G_CAOFTX.js +0 -328
  769. package/dist/useExperimentSelector-G_CAOFTX.js.map +0 -1
  770. package/dist/useFormBuilder-D37ajgS8.js +0 -729
  771. package/dist/useFormBuilder-D37ajgS8.js.map +0 -1
  772. package/dist/validation-ChMyixAf.js.map +0 -1
  773. package/src/__tests__/components/AppPluginSwitcher.test.ts +0 -44
  774. package/src/__tests__/components/DropdownButton.test.ts +0 -628
  775. package/src/__tests__/components/FileBrowserModal.test.ts +0 -460
  776. package/src/__tests__/components/InstrumentAlertLog.test.ts +0 -59
  777. package/src/__tests__/components/LcmsSequenceTable.test.ts +0 -79
  778. package/src/__tests__/components/PlateMapEditorToolbarInternal.test.ts +0 -54
  779. package/src/__tests__/components/RackEditor.test.ts +0 -169
  780. package/src/__tests__/composables/useAuth.test.ts +0 -233
  781. package/src/__tests__/composables/useCommandHistory.test.ts +0 -43
  782. package/src/__tests__/composables/useOptimisticMutation.test.ts +0 -40
  783. package/src/__tests__/composables/usePluginConfig.test.ts +0 -497
  784. package/src/__tests__/composables/useResourceCrud.test.ts +0 -56
  785. package/src/__tests__/composables/useWellPainting.test.ts +0 -52
  786. package/src/__tests__/composables/useWellPlateAdapter.test.ts +0 -50
  787. package/src/__tests__/composables/useWellPlateValidation.test.ts +0 -42
  788. package/src/components/AppPluginSwitcher.story.vue +0 -87
  789. package/src/components/AppPluginSwitcher.vue +0 -134
  790. package/src/components/ColorSlider.story.vue +0 -120
  791. package/src/components/ColorSlider.vue +0 -160
  792. package/src/components/DropdownButton.story.vue +0 -102
  793. package/src/components/DropdownButton.vue +0 -181
  794. package/src/components/FileBrowserModal.story.vue +0 -203
  795. package/src/components/FileBrowserModal.vue +0 -384
  796. package/src/components/InstrumentAlertLog.vue +0 -187
  797. package/src/components/InstrumentStatusCard.vue +0 -184
  798. package/src/components/LcmsSequenceTable.vue +0 -222
  799. package/src/components/PlateMapEditor.story.vue +0 -92
  800. package/src/components/PlateMapEditor.vue +0 -423
  801. package/src/components/RackEditor.story.vue +0 -100
  802. package/src/components/RackEditor.vue +0 -429
  803. package/src/components/fileBrowserPresentation.ts +0 -39
  804. package/src/components/internal/FileBrowserDialogInternal.vue +0 -75
  805. package/src/components/internal/FileBrowserListingInternal.vue +0 -197
  806. package/src/components/internal/FileBrowserToolbarInternal.vue +0 -136
  807. package/src/components/internal/FilePickerTreeInternal.vue +0 -238
  808. package/src/components/internal/PlateMapEditorToolbarInternal.vue +0 -128
  809. package/src/composables/useAsync.ts +0 -327
  810. package/src/composables/useAuth.ts +0 -458
  811. package/src/composables/useCommandHistory.ts +0 -117
  812. package/src/composables/useOptimisticMutation.ts +0 -97
  813. package/src/composables/usePasskey.ts +0 -216
  814. package/src/composables/usePluginConfig.ts +0 -252
  815. package/src/composables/useResourceCrud.ts +0 -235
  816. package/src/composables/useWellPainting.ts +0 -167
  817. package/src/composables/useWellPlateAdapter.ts +0 -151
  818. package/src/composables/useWellPlateEditor.ts +0 -415
  819. package/src/composables/useWellPlateValidation.ts +0 -89
  820. package/src/plotly-dist.d.ts +0 -3
  821. package/src/styles/components/app-plugin-switcher.css +0 -196
  822. package/src/styles/components/color-slider.css +0 -110
  823. package/src/styles/components/dropdown-button.css +0 -280
  824. package/src/styles/components/file-browser-modal.css +0 -489
  825. package/src/styles/components/lcms-sequence-table.css +0 -204
  826. package/src/styles/components/plate-map-editor.css +0 -464
  827. package/src/styles/components/rack-editor.css +0 -287
  828. /package/dist/__tests__/components/{AppPluginSwitcher.test.d.ts → AlertBox.test.d.ts} +0 -0
  829. /package/dist/__tests__/components/{DropdownButton.test.d.ts → AuditTrail.test.d.ts} +0 -0
  830. /package/dist/__tests__/components/{FileBrowserModal.test.d.ts → BaseCheckbox.test.d.ts} +0 -0
  831. /package/dist/__tests__/components/{InstrumentAlertLog.test.d.ts → BaseSlider.test.d.ts} +0 -0
  832. /package/dist/__tests__/components/{LcmsSequenceTable.test.d.ts → DoseCalculator.test.d.ts} +0 -0
  833. /package/dist/__tests__/components/{PlateMapEditorToolbarInternal.test.d.ts → FileUploader.test.d.ts} +0 -0
  834. /package/dist/__tests__/components/{RackEditor.test.d.ts → FitPanel.test.d.ts} +0 -0
  835. /package/dist/__tests__/{composables/useAuth.test.d.ts → components/FormulaInput.test.d.ts} +0 -0
  836. /package/dist/__tests__/{composables/useCommandHistory.test.d.ts → components/InstrumentStateBadge.test.d.ts} +0 -0
  837. /package/dist/__tests__/{composables/useOptimisticMutation.test.d.ts → components/MoleculeInput.test.d.ts} +0 -0
  838. /package/dist/__tests__/{composables/useResourceCrud.test.d.ts → components/PlateEditor.test.d.ts} +0 -0
  839. /package/dist/__tests__/{composables/useWellPainting.test.d.ts → components/PlateEditorBindingInternal.test.d.ts} +0 -0
  840. /package/dist/__tests__/{composables/useWellPlateAdapter.test.d.ts → components/ResourcePickerListInternal.test.d.ts} +0 -0
  841. /package/dist/__tests__/{composables/useWellPlateValidation.test.d.ts → components/SampleLegend.test.d.ts} +0 -0
@@ -0,0 +1,78 @@
1
+ import { dirname, resolve } from 'node:path'
2
+ import { fileURLToPath } from 'node:url'
3
+ import { beforeAll, describe, expect, it } from 'vitest'
4
+ import ts from 'typescript'
5
+
6
+ const TEMPLATES_INDEX = resolve(dirname(fileURLToPath(import.meta.url)), '../../templates/index.ts')
7
+ const COMPONENTS_INDEX = resolve(dirname(fileURLToPath(import.meta.url)), '../../components/index.ts')
8
+ const COMPOSABLES_DIR = resolve(dirname(fileURLToPath(import.meta.url)), '../../composables')
9
+
10
+ // Composables removed in MINT 1.4 with the templates and sample grouping.
11
+ const REMOVED_COMPOSABLE_FILES = [
12
+ 'useBioTemplateComponents.ts',
13
+ 'useBioTemplateControls.ts',
14
+ 'useBioTemplatePackWorkspace.ts',
15
+ 'useBioTemplatePresetWorkspace.ts',
16
+ 'useBioTemplateWorkspace.ts',
17
+ 'useTemplateCollection.ts',
18
+ 'useExperimentSave.ts',
19
+ 'useGroupAssignment.ts',
20
+ ].map(file => resolve(COMPOSABLES_DIR, file))
21
+
22
+ // One program for every file: building one per file took longer than the test timeout on CI.
23
+ let program: ts.Program
24
+ let checker: ts.TypeChecker
25
+
26
+ beforeAll(() => {
27
+ program = ts.createProgram([TEMPLATES_INDEX, COMPONENTS_INDEX, ...REMOVED_COMPOSABLE_FILES], {
28
+ target: ts.ScriptTarget.ES2022,
29
+ module: ts.ModuleKind.ESNext,
30
+ moduleResolution: ts.ModuleResolutionKind.Bundler,
31
+ noEmit: true,
32
+ })
33
+ checker = program.getTypeChecker()
34
+ }, 60_000)
35
+
36
+ function exportsOf(file: string): ts.Symbol[] {
37
+ return checker.getExportsOfModule(checker.getSymbolAtLocation(program.getSourceFile(file)!)!)
38
+ }
39
+
40
+ function isDeprecated(symbol: ts.Symbol): boolean {
41
+ return symbol.getJsDocTags(checker).some(tag => tag.name === 'deprecated')
42
+ }
43
+
44
+ // TypeScript ignores @deprecated on `export { ... } from` blocks; an import
45
+ // site only shows the deprecation when the original declaration carries it.
46
+ function undeprecatedValueExports(file: string): string[] {
47
+ return exportsOf(file)
48
+ .map(symbol => (symbol.flags & ts.SymbolFlags.Alias ? checker.getAliasedSymbol(symbol) : symbol))
49
+ .filter(symbol => symbol.flags & ts.SymbolFlags.Value)
50
+ .filter(symbol => !isDeprecated(symbol))
51
+ .map(symbol => symbol.getName())
52
+ }
53
+
54
+ describe('templates deprecation', () => {
55
+ it('should expose deprecated component tags to TypeScript consumers', () => {
56
+ const names = ['BioTemplateRenderer', 'SmartGroupModal', 'DoseDesignWorkspaceView']
57
+ const tagged = exportsOf(COMPONENTS_INDEX).filter(isDeprecated).map(symbol => symbol.getName())
58
+
59
+ expect(names.filter(name => !tagged.includes(name))).toEqual([])
60
+ })
61
+
62
+ it('should not tag components that stay public in MINT 1.4', () => {
63
+ const names = ['SampleSelector', 'SequenceProgressBar', 'InstrumentStateBadge']
64
+ const tagged = exportsOf(COMPONENTS_INDEX).filter(isDeprecated).map(symbol => symbol.getName())
65
+
66
+ expect(names.filter(name => tagged.includes(name))).toEqual([])
67
+ })
68
+
69
+ it('should tag every template value export when the templates move out in MINT 1.4', () => {
70
+ expect(undeprecatedValueExports(TEMPLATES_INDEX)).toEqual([])
71
+ })
72
+
73
+ it('should tag every value export of the template and grouping composables when they are removed in MINT 1.4', () => {
74
+ const untagged = REMOVED_COMPOSABLE_FILES.flatMap(undeprecatedValueExports)
75
+
76
+ expect(untagged).toEqual([])
77
+ })
78
+ })
@@ -7,7 +7,6 @@ import {
7
7
  hasAllPermissions,
8
8
  hasAnyPermission,
9
9
  isAdminUser,
10
- normalizeAccessPolicy,
11
10
  } from '../../permissions'
12
11
 
13
12
  describe('permission helpers', () => {
@@ -61,70 +60,3 @@ describe('permission helpers', () => {
61
60
  expect(canAccessByPolicy(member, { plugin: 'reports' })).toBe(false)
62
61
  })
63
62
  })
64
-
65
- describe('normalizeAccessPolicy precedence', () => {
66
- it('returns an empty policy for an absent rule', () => {
67
- expect(normalizeAccessPolicy(undefined)).toEqual({})
68
- })
69
-
70
- it('reads a flat-only rule as-is', () => {
71
- expect(normalizeAccessPolicy({
72
- visibleFor: 'admin',
73
- requiresAdmin: true,
74
- permissions: ['users.manage'],
75
- anyPermissions: ['plugins.install'],
76
- })).toEqual({
77
- visibleFor: 'admin',
78
- requiresAdmin: true,
79
- permissions: ['users.manage'],
80
- anyPermissions: ['plugins.install'],
81
- })
82
- })
83
-
84
- it('lifts a nested-only policy to the top level', () => {
85
- expect(normalizeAccessPolicy({
86
- access: { requiresAuth: true, plugin: 'reports', visibleFor: 'admin' },
87
- })).toEqual({
88
- requiresAuth: true,
89
- plugin: 'reports',
90
- visibleFor: 'admin',
91
- })
92
- })
93
-
94
- it('lets the nested policy win over the deprecated flat duplicates', () => {
95
- expect(normalizeAccessPolicy({
96
- access: {
97
- visibleFor: 'admin',
98
- requiresAdmin: true,
99
- permissions: ['users.manage'],
100
- anyPermissions: ['plugins.install'],
101
- },
102
- visibleFor: 'user',
103
- requiresAdmin: false,
104
- permissions: ['experiments.view'],
105
- anyPermissions: ['experiments.edit'],
106
- })).toEqual({
107
- visibleFor: 'admin',
108
- requiresAdmin: true,
109
- permissions: ['users.manage'],
110
- anyPermissions: ['plugins.install'],
111
- })
112
- })
113
-
114
- it('treats an undefined nested field as unset instead of masking the flat one', () => {
115
- expect(normalizeAccessPolicy({
116
- access: { visibleFor: undefined, requiresAdmin: true },
117
- visibleFor: 'user',
118
- })).toEqual({
119
- visibleFor: 'user',
120
- requiresAdmin: true,
121
- })
122
- })
123
-
124
- it('feeds canAccessByPolicy from the nested policy', () => {
125
- const member = { role: 'member', permissions: ['experiments.view'] }
126
-
127
- expect(canAccessByPolicy(member, { access: { requiresAdmin: true }, requiresAdmin: false })).toBe(false)
128
- expect(canAccessByPolicy(member, { access: { visibleFor: 'user' }, visibleFor: 'admin' })).toBe(true)
129
- })
130
- })
@@ -0,0 +1,69 @@
1
+ import { afterEach, beforeEach, describe, expect, it } from 'vitest'
2
+ import { mintPlotlyTemplate } from '../../utils/plotlyTemplate'
3
+
4
+ const tokens: Record<string, string> = {
5
+ '--mint-sample-1': '#111111',
6
+ '--mint-sample-2': '#222222',
7
+ '--mint-sample-3': '#333333',
8
+ '--mint-sample-4': '#444444',
9
+ '--mint-sample-5': '#555555',
10
+ '--mint-sample-6': '#666666',
11
+ '--mint-sample-7': '#777777',
12
+ '--mint-sample-8': '#888888',
13
+ '--font-sans': 'Fira Sans',
14
+ '--font-mono': 'Fira Code',
15
+ '--text-primary': '#1E293B',
16
+ '--text-secondary': '#64748B',
17
+ '--border-light': '#F3F4F6',
18
+ '--border-color': '#E5E7EB',
19
+ '--bg-card': '#FFFFFF',
20
+ }
21
+
22
+ describe('mintPlotlyTemplate', () => {
23
+ beforeEach(() => {
24
+ for (const [name, value] of Object.entries(tokens)) document.documentElement.style.setProperty(name, value)
25
+ })
26
+
27
+ afterEach(() => {
28
+ document.documentElement.removeAttribute('style')
29
+ })
30
+
31
+ it('should take the colorway from the eight group tokens when they are defined', () => {
32
+ expect(mintPlotlyTemplate().layout?.colorway).toEqual(
33
+ ['#111111', '#222222', '#333333', '#444444', '#555555', '#666666', '#777777', '#888888'],
34
+ )
35
+ })
36
+
37
+ it('should set 12px sans body text in the primary text color when tokens are defined', () => {
38
+ expect(mintPlotlyTemplate().layout?.font).toEqual({ family: 'Fira Sans', size: 12, color: '#1E293B' })
39
+ })
40
+
41
+ it('should set 11px mono ticks in the secondary text color when tokens are defined', () => {
42
+ expect(mintPlotlyTemplate().layout?.yaxis?.tickfont).toEqual({ family: 'Fira Code', size: 11, color: '#64748B' })
43
+ })
44
+
45
+ it('should draw the grid with --border-light when tokens are defined', () => {
46
+ expect(mintPlotlyTemplate().layout?.xaxis?.gridcolor).toBe('#F3F4F6')
47
+ })
48
+
49
+ it('should draw axis lines with --border-color when tokens are defined', () => {
50
+ expect(mintPlotlyTemplate().layout?.xaxis?.linecolor).toBe('#E5E7EB')
51
+ })
52
+
53
+ it('should style the hover label as a bordered card when tokens are defined', () => {
54
+ expect(mintPlotlyTemplate().layout?.hoverlabel).toMatchObject({ bgcolor: '#FFFFFF', bordercolor: '#E5E7EB' })
55
+ })
56
+
57
+ it('should read tokens from the given element when it overrides them', () => {
58
+ const element = document.createElement('div')
59
+ element.style.setProperty('--text-primary', '#F8FAFC')
60
+ document.body.appendChild(element)
61
+ expect(mintPlotlyTemplate(element).layout?.font?.color).toBe('#F8FAFC')
62
+ element.remove()
63
+ })
64
+
65
+ it('should fall back to the hex group scale when the group tokens are missing', () => {
66
+ document.documentElement.removeAttribute('style')
67
+ expect(mintPlotlyTemplate().layout?.colorway?.[0]).toBe('#3B82F6')
68
+ })
69
+ })
@@ -0,0 +1,54 @@
1
+ import { describe, expect, it } from 'vitest'
2
+ import { sampleTypeMarker } from '../../utils/sampleTypeMarker'
3
+
4
+ const group = 'var(--mint-sample-2)'
5
+
6
+ describe('sampleTypeMarker', () => {
7
+ it('should fill with a tint of the group color when the type is sample', () => {
8
+ expect(sampleTypeMarker('sample', group).style.background).toBe(
9
+ 'color-mix(in srgb, var(--mint-sample-2) 28%, var(--bg-card))',
10
+ )
11
+ })
12
+
13
+ it('should outline in the group color when the type is sample', () => {
14
+ expect(sampleTypeMarker('sample', group).style.border).toBe('1px solid var(--mint-sample-2)')
15
+ })
16
+
17
+ it('should render no glyph when the type is sample', () => {
18
+ expect(sampleTypeMarker('sample', group).glyph).toBeNull()
19
+ })
20
+
21
+ it('should draw a dashed hollow outline when the type is blank', () => {
22
+ expect(sampleTypeMarker('blank', group).style.border).toBe('1.5px dashed var(--_control-border-strong)')
23
+ })
24
+
25
+ it('should ignore the group color when the type is blank', () => {
26
+ expect(sampleTypeMarker('blank', group).style.background).toBe('var(--bg-card)')
27
+ })
28
+
29
+ it('should draw a neutral solid ring when the type is qc', () => {
30
+ expect(sampleTypeMarker('qc', group).style.border).toBe('1.5px solid var(--text-secondary-strong)')
31
+ })
32
+
33
+ it('should mark with Q when the type is qc', () => {
34
+ expect(sampleTypeMarker('qc', group).glyph).toBe('Q')
35
+ })
36
+
37
+ it('should keep the group fill when the type is iqc', () => {
38
+ expect(sampleTypeMarker('iqc', group).style.background).toBe(
39
+ sampleTypeMarker('sample', group).style.background,
40
+ )
41
+ })
42
+
43
+ it('should mark with i when the type is iqc', () => {
44
+ expect(sampleTypeMarker('iqc', group).glyph).toBe('i')
45
+ })
46
+
47
+ it('should match case-insensitively when the type is upper case', () => {
48
+ expect(sampleTypeMarker('QC', group).glyph).toBe('Q')
49
+ })
50
+
51
+ it('should fall back to the sample marker when the type is unknown', () => {
52
+ expect(sampleTypeMarker('control', group)).toEqual(sampleTypeMarker('sample', group))
53
+ })
54
+ })
@@ -1,7 +1,7 @@
1
1
  <script setup lang="ts">
2
2
  /** Compact overflow actions with an IconButton trigger and a viewport-safe teleported menu. */
3
3
  import { computePosition, flip, offset, shift } from '@floating-ui/dom'
4
- import { Ellipsis } from 'lucide-vue-next'
4
+ import { Check, Ellipsis } from 'lucide-vue-next'
5
5
  import { nextTick, onMounted, ref, watch } from 'vue'
6
6
  import { useDropdownState } from '../composables/useDropdownState'
7
7
  import { useMenuKeyboard } from '../composables/useMenuKeyboard'
@@ -24,6 +24,11 @@ const emit = defineEmits<{
24
24
  close: []
25
25
  }>()
26
26
 
27
+ defineSlots<{
28
+ /** Replaces the ellipsis IconButton; `toggle` and `keydown` go on the slotted button. */
29
+ trigger?: (props: { open: boolean; toggle: () => void; keydown: (event: KeyboardEvent) => void }) => unknown
30
+ }>()
31
+
27
32
  const panelRef = ref<HTMLElement | null>(null)
28
33
  const panelStyle = ref<Record<string, string>>({ visibility: 'hidden' })
29
34
 
@@ -110,41 +115,49 @@ watch(isOpen, async (opened) => {
110
115
 
111
116
  <template>
112
117
  <span ref="rootRef" class="mint-action-menu">
113
- <IconButton
114
- variant="secondary"
115
- size="sm"
116
- :label="label"
117
- :disabled="disabled"
118
- aria-haspopup="menu"
119
- :aria-expanded="isOpen"
120
- @click="toggleMenu"
121
- @keydown="handleTriggerKeydown"
122
- >
123
- <Ellipsis
124
- class="mint-action-menu__trigger-icon"
125
- :size="16"
126
- :stroke-width="2"
127
- aria-hidden="true"
128
- />
129
- </IconButton>
118
+ <!-- A custom trigger must render one <button> and wire toggle + keydown to it. -->
119
+ <slot name="trigger" :open="isOpen" :toggle="toggleMenu" :keydown="handleTriggerKeydown">
120
+ <IconButton
121
+ variant="secondary"
122
+ size="sm"
123
+ :label="label"
124
+ :disabled="disabled"
125
+ aria-haspopup="menu"
126
+ :aria-expanded="isOpen"
127
+ @click="toggleMenu"
128
+ @keydown="handleTriggerKeydown"
129
+ >
130
+ <Ellipsis
131
+ class="mint-action-menu__trigger-icon"
132
+ :size="16"
133
+ :stroke-width="2"
134
+ aria-hidden="true"
135
+ />
136
+ </IconButton>
137
+ </slot>
130
138
  </span>
131
139
 
132
140
  <Teleport to="body">
133
141
  <div
134
142
  v-if="isOpen"
135
143
  ref="panelRef"
136
- class="mint-action-menu__panel"
144
+ class="mint-popover mint-action-menu__panel"
137
145
  :style="panelStyle"
138
146
  role="menu"
139
147
  @keydown="handlePanelKeydown"
140
148
  >
141
- <template v-for="item in items" :key="item.id">
149
+ <template v-for="(item, index) in items" :key="item.id">
150
+ <div
151
+ v-if="item.danger && index > 0 && !items[index - 1].danger"
152
+ class="mint-menu-separator"
153
+ role="separator"
154
+ />
142
155
  <a
143
156
  v-if="item.href !== undefined && !item.disabled"
144
157
  :href="item.href"
145
158
  :target="item.target"
146
159
  :rel="item.target === '_blank' ? 'noopener noreferrer' : undefined"
147
- :class="['mint-action-menu__item', { 'mint-action-menu__item--danger': item.danger }]"
160
+ :class="['mint-menu-item mint-action-menu__item', { 'mint-menu-item--danger mint-action-menu__item--danger': item.danger }]"
148
161
  role="menuitem"
149
162
  @click="handleSelect(item)"
150
163
  >
@@ -153,11 +166,19 @@ watch(isOpen, async (opened) => {
153
166
  <button
154
167
  v-else
155
168
  type="button"
156
- :class="['mint-action-menu__item', { 'mint-action-menu__item--danger': item.danger }]"
157
- role="menuitem"
169
+ :class="['mint-menu-item mint-action-menu__item', { 'mint-menu-item--danger mint-action-menu__item--danger': item.danger }]"
170
+ :role="item.checked === undefined ? 'menuitem' : 'menuitemradio'"
171
+ :aria-checked="item.checked"
158
172
  :disabled="item.disabled"
159
173
  @click="handleSelect(item)"
160
174
  >
175
+ <Check
176
+ v-if="item.checked !== undefined"
177
+ class="mint-action-menu__check"
178
+ :class="{ 'mint-action-menu__check--off': !item.checked }"
179
+ :size="14"
180
+ aria-hidden="true"
181
+ />
161
182
  {{ item.label }}
162
183
  </button>
163
184
  </template>
@@ -11,5 +11,23 @@ import AdductText from './AdductText.vue'
11
11
  <AdductText />
12
12
  </div>
13
13
  </Variant>
14
+
15
+ <Variant title="Tones and inherited size">
16
+ <div style="display: flex; flex-direction: column; gap: 0.75rem; padding: 2rem; max-width: 600px; color: var(--text-primary); font-size: 0.875rem;">
17
+ <div style="display: flex; align-items: center; gap: 1rem;">
18
+ <AdductText value="[M+2H]2+" size="inherit" tone="default" />
19
+ <AdductText value="[M-H]-" size="inherit" tone="muted" />
20
+ <AdductText value="[M+NH4]+" size="inherit" variant="badge" />
21
+ </div>
22
+ <div style="display: flex; align-items: center; gap: 1rem; padding: 0.75rem; border: 1px solid var(--border-color); border-radius: var(--radius-md); background: var(--bg-card);">
23
+ <AdductText value="[M+H]+" tone="on-primary" size="inherit" />
24
+ <AdductText value="[M+Na]+" tone="on-primary" variant="badge" size="inherit" />
25
+ <span style="display: inline-flex; gap: 0.5rem; padding: 0.25rem 0.625rem; border-radius: var(--radius); background: var(--color-primary); color: white;">
26
+ <AdductText value="[M+H]+" tone="on-primary" size="inherit" />
27
+ <AdductText value="[M+K]+" tone="on-primary" variant="badge" size="inherit" />
28
+ </span>
29
+ </div>
30
+ </div>
31
+ </Variant>
14
32
  </Story>
15
33
  </template>
@@ -21,6 +21,11 @@ const props = withDefaults(defineProps<Props>(), {
21
21
  })
22
22
 
23
23
  const value = computed(() => props.value?.trim() ?? '')
24
+ // `[M+2H]2+` → base `[M+2H]`, charge `2+`; anything unbracketed stays one run.
25
+ const parts = computed(() => {
26
+ const match = /^(.*\])(\d*[+\-−]+\d*)$/.exec(value.value)
27
+ return match ? { base: match[1], charge: match[2] } : { base: value.value, charge: '' }
28
+ })
24
29
  </script>
25
30
 
26
31
  <template>
@@ -35,6 +40,7 @@ const value = computed(() => props.value?.trim() ?? '')
35
40
  ]"
36
41
  :title="value || undefined"
37
42
  >
38
- {{ value || emptyText }}
43
+ <template v-if="value">{{ parts.base }}<sup v-if="parts.charge" class="mint-adduct-text__charge">{{ parts.charge }}</sup></template>
44
+ <template v-else>{{ emptyText }}</template>
39
45
  </span>
40
46
  </template>
@@ -2,6 +2,7 @@
2
2
  /** Inline alert banner with semantic icon, title, message slot, optional action button, and optional dismiss button. */
3
3
  import { useSlots } from 'vue'
4
4
  import type { AlertType } from '../types'
5
+ import BaseButton from './BaseButton.vue'
5
6
 
6
7
  interface Props {
7
8
  type?: AlertType
@@ -58,14 +59,9 @@ const hasActions = () => !!props.actionLabel || !!slots.actions
58
59
 
59
60
  <div v-if="hasActions()" class="mint-alert__actions">
60
61
  <slot name="actions">
61
- <button
62
- type="button"
63
- class="mint-alert__action-btn"
64
- :class="`mint-alert__action-btn--${props.type}`"
65
- @click="emit('action')"
66
- >
62
+ <BaseButton variant="secondary" size="sm" @click="emit('action')">
67
63
  {{ props.actionLabel }}
68
- </button>
64
+ </BaseButton>
69
65
  </slot>
70
66
  </div>
71
67
 
@@ -1,6 +1,6 @@
1
1
  <script setup lang="ts">
2
2
  /** Avatar-triggered dropdown with user name/email header, configurable menu items, dividers, and a sign-out action. */
3
- import { computed, ref } from 'vue'
3
+ import { computed, ref, useTemplateRef } from 'vue'
4
4
  import { useDropdownState } from '../composables/useDropdownState'
5
5
  import { useMenuKeyboard } from '../composables/useMenuKeyboard'
6
6
  import type { AccountMenuItem } from '../types/components'
@@ -28,7 +28,9 @@ const emit = defineEmits<{
28
28
  'menu-close': []
29
29
  }>()
30
30
 
31
- const { isOpen, rootRef, triggerRef, open, close, toggle } = useDropdownState({
31
+ const { isOpen, open, close, toggle } = useDropdownState({
32
+ rootRef: useTemplateRef<HTMLElement>('root'),
33
+ triggerRef: useTemplateRef<HTMLElement>('trigger'),
32
34
  onOpen: () => emit('menu-open'),
33
35
  onClose: () => emit('menu-close'),
34
36
  })
@@ -77,9 +79,9 @@ function handleSignOut() {
77
79
  </script>
78
80
 
79
81
  <template>
80
- <div ref="rootRef" class="mint-avatar-menu">
82
+ <div ref="root" class="mint-avatar-menu">
81
83
  <button
82
- ref="triggerRef"
84
+ ref="trigger"
83
85
  type="button"
84
86
  class="mint-avatar-menu__trigger"
85
87
  :class="{ 'mint-avatar-menu__trigger--open': isOpen }"
@@ -100,7 +102,7 @@ function handleSignOut() {
100
102
  <div
101
103
  v-if="isOpen"
102
104
  ref="panelRef"
103
- class="mint-avatar-menu__panel"
105
+ class="mint-popover mint-avatar-menu__panel"
104
106
  role="menu"
105
107
  @keydown="handlePanelKeydown"
106
108
  >
@@ -111,12 +113,12 @@ function handleSignOut() {
111
113
 
112
114
  <slot name="items" :close="closeSilently">
113
115
  <template v-for="item in items" :key="item.id">
114
- <div v-if="item.divider" class="mint-avatar-menu__divider" role="separator" />
116
+ <div v-if="item.divider" class="mint-menu-separator mint-avatar-menu__divider" role="separator" />
115
117
  <ActionItemInternal
116
118
  v-else
117
119
  :href="item.href"
118
120
  :to="item.to"
119
- :class="['mint-avatar-menu__item', { 'mint-avatar-menu__item--danger': item.danger }]"
121
+ :class="['mint-menu-item mint-avatar-menu__item', { 'mint-menu-item--danger mint-avatar-menu__item--danger': item.danger }]"
120
122
  role="menuitem"
121
123
  @click="handleSelect(item)"
122
124
  >
@@ -124,16 +126,16 @@ function handleSignOut() {
124
126
  <slot name="item-icon" :item="item" />
125
127
  </span>
126
128
  <span class="mint-avatar-menu__item-label">{{ item.label }}</span>
127
- <span v-if="item.rightLabel" class="mint-avatar-menu__item-right">{{ item.rightLabel }}</span>
129
+ <span v-if="item.rightLabel" class="mint-menu-item__meta mint-avatar-menu__item-right">{{ item.rightLabel }}</span>
128
130
  </ActionItemInternal>
129
131
  </template>
130
132
  </slot>
131
133
 
132
134
  <template v-if="showSignOut">
133
- <div class="mint-avatar-menu__divider" role="separator" />
135
+ <div class="mint-menu-separator mint-avatar-menu__divider" role="separator" />
134
136
  <button
135
137
  type="button"
136
- class="mint-avatar-menu__item mint-avatar-menu__item--danger"
138
+ class="mint-menu-item mint-menu-item--danger mint-avatar-menu__item mint-avatar-menu__item--danger"
137
139
  role="menuitem"
138
140
  @click="handleSignOut"
139
141
  >
@@ -46,7 +46,7 @@ interface Props {
46
46
  floating?: boolean
47
47
  /** Section density. `compact` (default) is the 36px header row; `comfortable` restores the roomier spacing. */
48
48
  density?: 'compact' | 'comfortable'
49
- /** @deprecated Compact is now the default. Pass `density="comfortable"` for the roomier layout. */
49
+ /** @deprecated Compact is now the default; removed in MINT 1.4. Pass `density="comfortable"` for the roomier layout. */
50
50
  dense?: boolean
51
51
  /** Width when visible. */
52
52
  width?: string
@@ -6,6 +6,7 @@ import type {
6
6
  PillNavItem,
7
7
  PageSelectorItem,
8
8
  AccountMenuItem,
9
+ PluginInfo,
9
10
  } from '../types'
10
11
 
11
12
  const variants: TopBarVariant[] = ['card', 'default']
@@ -17,6 +18,20 @@ const samplePillNav: PillNavItem[] = [
17
18
  { id: 'admin', label: 'Admin' },
18
19
  ]
19
20
 
21
+ // Records dropdown labels itself with the active child; Instruments carries an alert dot.
22
+ const platformPillNav: PillNavItem[] = [
23
+ { id: 'home', label: 'Home' },
24
+ {
25
+ id: 'records',
26
+ label: 'Experiments',
27
+ children: [
28
+ { id: 'experiments', label: 'Experiments' },
29
+ { id: 'projects', label: 'Projects' },
30
+ ],
31
+ },
32
+ { id: 'instruments', label: 'Instruments', dot: true },
33
+ ]
34
+
20
35
  const samplePageSelector: PageSelectorItem[] = [
21
36
  { id: 'workspace', label: 'Workspace' },
22
37
  { id: 'experiments', label: 'Experiments' },
@@ -27,6 +42,22 @@ const samplePageSelector: PageSelectorItem[] = [
27
42
 
28
43
  // Theme is now surfaced as a top-level icon button (show-theme-toggle),
29
44
  // not as an account-menu item. Menu holds identity-level actions only.
45
+ const samplePluginPages: PageSelectorItem[] = [
46
+ { id: 'peaks', label: 'Peak integration' },
47
+ { id: 'calibration', label: 'Calibration' },
48
+ { id: 'report', label: 'Report' },
49
+ ]
50
+
51
+ const samplePlugin: PluginInfo = {
52
+ id: 'lcms-analysis',
53
+ name: 'LC-MS Analysis',
54
+ version: '2.4.0',
55
+ icon: 'activity',
56
+ color: 'cyan',
57
+ route_prefix: '/lcms',
58
+ api_prefix: '/api/lcms',
59
+ }
60
+
30
61
  const sampleAccountMenu: AccountMenuItem[] = [
31
62
  { id: 'profile', label: 'Profile' },
32
63
  { id: 'settings', label: 'Settings' },
@@ -77,7 +108,7 @@ const sampleAccountMenu: AccountMenuItem[] = [
77
108
  </Variant>
78
109
 
79
110
  <Variant title="Refresh · Workspace">
80
- <div style="padding: 2rem; background: var(--bg-primary); min-height: 12rem;">
111
+ <div style="padding: 2rem; background: var(--bg-primary); min-height: 22rem;">
81
112
  <AppTopBar
82
113
  :page-selector="samplePageSelector"
83
114
  current-page-selector-id="workspace"
@@ -119,10 +150,10 @@ const sampleAccountMenu: AccountMenuItem[] = [
119
150
 
120
151
  <Variant title="Refresh · Inside plugin">
121
152
  <div style="padding: 2rem; background: var(--bg-primary); min-height: 12rem;">
122
- <ExperimentProvider>
153
+ <ExperimentProvider :plugin="samplePlugin">
123
154
  <AppTopBar
124
- :page-selector="samplePageSelector"
125
- current-page-selector-id="plugins"
155
+ :page-selector="samplePluginPages"
156
+ current-page-selector-id="peaks"
126
157
  :pill-nav="samplePillNav"
127
158
  current-pill-id="experiments"
128
159
  show-theme-toggle
@@ -258,6 +289,18 @@ const sampleAccountMenu: AccountMenuItem[] = [
258
289
  </div>
259
290
  </Variant>
260
291
 
292
+ <Variant title="Navigation · Pill nav with dropdown and dot">
293
+ <div style="padding: 2rem;">
294
+ <AppTopBar
295
+ title="Projects"
296
+ :pill-nav="platformPillNav"
297
+ current-pill-id="projects"
298
+ variant="card"
299
+ home-path=""
300
+ />
301
+ </div>
302
+ </Variant>
303
+
261
304
  <Variant title="Base · Minimal (logo only)">
262
305
  <div style="padding: 2rem;">
263
306
  <AppTopBar :show-logo="true" home-path="/" />