@morscherlab/mint-sdk 1.2.10 → 1.3.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (841) hide show
  1. package/README.md +45 -137
  2. package/dist/ResourcePickerListInternal-CFAw4vTZ.js +605 -0
  3. package/dist/ResourcePickerListInternal-CFAw4vTZ.js.map +1 -0
  4. package/dist/__stories__/experiment-helpers.d.ts +12 -1
  5. package/dist/__tests__/components/ScientificNumber.test.d.ts +1 -0
  6. package/dist/__tests__/components/SequenceInput.test.d.ts +1 -0
  7. package/dist/__tests__/components/Skeleton.test.d.ts +1 -0
  8. package/dist/__tests__/components/SmartGroupFieldRecipe.test.d.ts +1 -0
  9. package/dist/__tests__/components/SmartGroupModal.test.d.ts +1 -0
  10. package/dist/__tests__/components/StepWizard.test.d.ts +1 -0
  11. package/dist/__tests__/components/TimeRangeInput.test.d.ts +1 -0
  12. package/dist/__tests__/components/UnitInput.test.d.ts +1 -0
  13. package/dist/__tests__/components/WellPlate.keyboard.test.d.ts +1 -0
  14. package/dist/__tests__/components/WellPlate.sampleTypeIndicator.test.d.ts +1 -0
  15. package/dist/__tests__/composables/useChemicalFormula.test.d.ts +1 -0
  16. package/dist/__tests__/composables/useRackEditor.test.d.ts +1 -0
  17. package/dist/__tests__/composables/useSequenceUtils.test.d.ts +1 -0
  18. package/dist/__tests__/styles/baseControlsRules.test.d.ts +1 -0
  19. package/dist/__tests__/styles/controlRefreshRules.test.d.ts +1 -0
  20. package/dist/__tests__/styles/darkModeRules.test.d.ts +1 -0
  21. package/dist/__tests__/styles/menusShellRefresh.test.d.ts +1 -0
  22. package/dist/__tests__/templates/templatesDeprecation.test.d.ts +1 -0
  23. package/dist/__tests__/utils/plotlyTemplate.test.d.ts +1 -0
  24. package/dist/__tests__/utils/sampleTypeMarker.test.d.ts +1 -0
  25. package/dist/{analysisArtifactTypes-DQ0MjwHZ.js → analysisArtifactTypes-Cy3D0Ipg.js} +1 -1
  26. package/dist/{analysisArtifactTypes-DQ0MjwHZ.js.map → analysisArtifactTypes-Cy3D0Ipg.js.map} +1 -1
  27. package/dist/components/ActionMenu.vue.d.ts +17 -5
  28. package/dist/components/AdductText.vue.d.ts +3 -2
  29. package/dist/components/AlertBox.vue.d.ts +11 -14
  30. package/dist/components/AppAvatarMenu.vue.d.ts +18 -28
  31. package/dist/components/AppContainer.vue.d.ts +7 -11
  32. package/dist/components/AppLayout.vue.d.ts +11 -13
  33. package/dist/components/AppSidebar.vue.d.ts +30 -28
  34. package/dist/components/AppToastContainer.vue.d.ts +2 -1
  35. package/dist/components/AppTopBar.vue.d.ts +45 -44
  36. package/dist/components/ArtifactSaveDialog.vue.d.ts +3 -2
  37. package/dist/components/ArtifactSelectorModal.vue.d.ts +5 -6
  38. package/dist/components/AuditTrail.vue.d.ts +17 -18
  39. package/dist/components/AutoGroupModal.vue.d.ts +4 -3
  40. package/dist/components/Avatar.vue.d.ts +2 -1
  41. package/dist/components/BaseButton.vue.d.ts +11 -13
  42. package/dist/components/BaseCheckbox.vue.d.ts +7 -1
  43. package/dist/components/BaseInput.vue.d.ts +15 -2
  44. package/dist/components/BaseModal.vue.d.ts +20 -23
  45. package/dist/components/BasePill.vue.d.ts +10 -13
  46. package/dist/components/BaseRadioGroup.vue.d.ts +2 -1
  47. package/dist/components/BaseSelect.vue.d.ts +3 -2
  48. package/dist/components/BaseSlider.vue.d.ts +18 -1
  49. package/dist/components/BaseTabs.vue.d.ts +2 -1
  50. package/dist/components/BaseTextarea.vue.d.ts +2 -1
  51. package/dist/components/BaseToggle.vue.d.ts +2 -1
  52. package/dist/components/BatchProgressList.vue.d.ts +22 -26
  53. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +7 -14
  54. package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +6 -13
  55. package/dist/components/BioTemplatePresetWorkspaceView.vue.d.ts +7 -14
  56. package/dist/components/BioTemplateRenderer.vue.d.ts +2 -1
  57. package/dist/components/Breadcrumb.vue.d.ts +13 -16
  58. package/dist/components/Calendar.vue.d.ts +21 -23
  59. package/dist/components/ChartContainer.vue.d.ts +19 -25
  60. package/dist/components/ChemicalFormula.vue.d.ts +7 -11
  61. package/dist/components/CollapsibleCard.vue.d.ts +7 -11
  62. package/dist/components/ComponentBindingRenderer.vue.d.ts +2 -1
  63. package/dist/components/ConcentrationInput.vue.d.ts +2 -1
  64. package/dist/components/ConfirmDialog.vue.d.ts +10 -13
  65. package/dist/components/ControlWorkspaceView.vue.d.ts +9 -18
  66. package/dist/components/DataFrame.vue.d.ts +27 -24
  67. package/dist/components/DatePicker.vue.d.ts +3 -6
  68. package/dist/components/DateTimePicker.vue.d.ts +3 -6
  69. package/dist/components/Divider.vue.d.ts +3 -2
  70. package/dist/components/DoseCalculator.vue.d.ts +2 -1
  71. package/dist/components/DoseCalculatorVolumeField.vue.d.ts +2 -1
  72. package/dist/components/DoseDesignWorkspaceView.vue.d.ts +9 -18
  73. package/dist/components/EmptyState.vue.d.ts +9 -12
  74. package/dist/components/ExperimentCodeBadge.vue.d.ts +2 -1
  75. package/dist/components/ExperimentDataViewer.vue.d.ts +13 -15
  76. package/dist/components/ExperimentPopover.vue.d.ts +3 -5
  77. package/dist/components/ExperimentSelectorModal.vue.d.ts +3 -4
  78. package/dist/components/ExperimentTimeline.vue.d.ts +13 -15
  79. package/dist/components/FilePicker.vue.d.ts +10 -5
  80. package/dist/components/FileUploader.vue.d.ts +8 -16
  81. package/dist/components/FitPanel.vue.d.ts +26 -16
  82. package/dist/components/FormActions.vue.d.ts +2 -1
  83. package/dist/components/FormBuilder.vue.d.ts +54 -250
  84. package/dist/components/FormField.vue.d.ts +14 -16
  85. package/dist/components/FormulaInput.vue.d.ts +2 -1
  86. package/dist/components/GeneratedPathInput.vue.d.ts +6 -5
  87. package/dist/components/GeneratedPlotlyResult.vue.d.ts +2 -1
  88. package/dist/components/GeneratedPluginView.vue.d.ts +2 -1
  89. package/dist/components/GeneratedResultRenderer.vue.d.ts +2 -1
  90. package/dist/components/GroupAssigner.vue.d.ts +2 -1
  91. package/dist/components/IconButton.vue.d.ts +7 -11
  92. package/dist/components/InstrumentStateBadge.vue.d.ts +4 -3
  93. package/dist/components/JobsStatusTray.vue.d.ts +13 -29
  94. package/dist/components/LayoutResizeHandle.vue.d.ts +2 -1
  95. package/dist/components/LoadingSpinner.vue.d.ts +2 -1
  96. package/dist/components/MobileSupportGate.vue.d.ts +5 -13
  97. package/dist/components/MoleculeInput.vue.d.ts +3 -4
  98. package/dist/components/MultiSelect.vue.d.ts +2 -1
  99. package/dist/components/NumberInput.vue.d.ts +2 -1
  100. package/dist/components/PlateEditor.vue.d.ts +147 -0
  101. package/dist/components/PlotlyChart.vue.d.ts +21 -31
  102. package/dist/components/PluginIcon.vue.d.ts +2 -1
  103. package/dist/components/PluginWorkspaceView.props.d.ts +2 -6
  104. package/dist/components/PluginWorkspaceView.vue.d.ts +23 -51
  105. package/dist/components/ProgressBar.vue.d.ts +4 -9
  106. package/dist/components/ProtocolStepEditor.vue.d.ts +7 -5
  107. package/dist/components/ProtocolStepParameterField.vue.d.ts +2 -1
  108. package/dist/components/ReagentEditor.vue.d.ts +2 -1
  109. package/dist/components/ReagentList.presentation.d.ts +2 -1
  110. package/dist/components/ReagentList.vue.d.ts +15 -17
  111. package/dist/components/ResourceCard.vue.d.ts +18 -17
  112. package/dist/components/RuntimeUpdateNotice.vue.d.ts +3 -2
  113. package/dist/components/SampleHierarchyTree.vue.d.ts +21 -15
  114. package/dist/components/SampleLegend.vue.d.ts +2 -1
  115. package/dist/components/SampleSelector.vue.d.ts +15 -21
  116. package/dist/components/SampleSelectorGroupNode.vue.d.ts +2 -1
  117. package/dist/components/SampleSelectorSampleRow.vue.d.ts +2 -5
  118. package/dist/components/ScheduleCalendar.vue.d.ts +34 -36
  119. package/dist/components/ScientificNumber.vue.d.ts +3 -2
  120. package/dist/components/SearchableSelect.vue.d.ts +14 -32
  121. package/dist/components/SecretInput.vue.d.ts +2 -1
  122. package/dist/components/SectionCard.vue.d.ts +13 -14
  123. package/dist/components/SegmentedControl.vue.d.ts +2 -1
  124. package/dist/components/SequenceInput.vue.d.ts +10 -21
  125. package/dist/components/SequenceProgressBar.vue.d.ts +2 -1
  126. package/dist/components/SettingsModal.schema.d.ts +1 -1
  127. package/dist/components/SettingsModal.vue.d.ts +28 -25
  128. package/dist/components/Skeleton.vue.d.ts +2 -1
  129. package/dist/components/SmartGroup.types.d.ts +2 -2
  130. package/dist/components/SmartGroupFieldRecipe.groups.d.ts +2 -0
  131. package/dist/components/SmartGroupFieldRecipe.vue.d.ts +4 -7
  132. package/dist/components/SmartGroupManual.vue.d.ts +3 -2
  133. package/dist/components/SmartGroupModal.vue.d.ts +6 -4
  134. package/dist/components/StatusIndicator.vue.d.ts +2 -1
  135. package/dist/components/StepWizard.vue.d.ts +26 -27
  136. package/dist/components/TagsInput.vue.d.ts +3 -5
  137. package/dist/components/ThemeToggle.vue.d.ts +2 -1
  138. package/dist/components/TimePicker.vue.d.ts +6 -6
  139. package/dist/components/TimeRangeInput.vue.d.ts +9 -2
  140. package/dist/components/Tooltip.vue.d.ts +8 -18
  141. package/dist/components/UnitInput.vue.d.ts +2 -1
  142. package/dist/components/WellPlate.colors.d.ts +2 -4
  143. package/dist/components/WellPlate.rendering.d.ts +7 -1
  144. package/dist/components/WellPlate.sampleDrop.d.ts +2 -0
  145. package/dist/components/WellPlate.vue.d.ts +22 -39
  146. package/dist/components/index.d.ts +34 -31
  147. package/dist/components/index.js +5 -8
  148. package/dist/components/internal/ActionItemInternal.vue.d.ts +11 -13
  149. package/dist/components/internal/AppTopBarPageSelectorInternal.vue.d.ts +14 -23
  150. package/dist/components/internal/AppTopBarPillNavInternal.vue.d.ts +2 -1
  151. package/dist/components/internal/CalendarGridPanelInternal.vue.d.ts +2 -1
  152. package/dist/components/internal/DataStateInternal.vue.d.ts +7 -11
  153. package/dist/components/internal/{FilePickerTreeInternal.vue.d.ts → FilePickerListInternal.vue.d.ts} +9 -6
  154. package/dist/components/internal/FilePickerPreviewInternal.vue.d.ts +4 -3
  155. package/dist/components/internal/FormFieldRendererInternal.vue.d.ts +16 -18
  156. package/dist/components/internal/FormSectionRenderer.vue.d.ts +36 -32
  157. package/dist/components/internal/PlateEditorBindingInternal.vue.d.ts +8 -0
  158. package/dist/components/internal/ResourcePickerListInternal.vue.d.ts +65 -0
  159. package/dist/components/internal/SettingsPaneHeadInternal.vue.d.ts +15 -0
  160. package/dist/components/internal/WellEditPopupInternal.vue.d.ts +12 -4
  161. package/dist/components/internal/WorkspaceControlsInternal.vue.d.ts +6 -13
  162. package/dist/components/internal/WorkspaceShellInternal.vue.d.ts +19 -42
  163. package/dist/components/internal/WorkspaceSidebarInternal.vue.d.ts +9 -19
  164. package/dist/components/internal/filePickerPresentation.d.ts +8 -0
  165. package/dist/components/internal/generatedJobsApi.d.ts +9 -0
  166. package/dist/{components-Bbg_gtzF.js → components-GDDvof8D.js} +7088 -5955
  167. package/dist/components-GDDvof8D.js.map +1 -0
  168. package/dist/composables/controlSchemaTypes.d.ts +4 -43
  169. package/dist/composables/createFilePickerAdapter.d.ts +5 -1
  170. package/dist/composables/filePicker/usePickerNavigation.d.ts +7 -2
  171. package/dist/composables/index.d.ts +2 -13
  172. package/dist/composables/index.js +7 -11
  173. package/dist/composables/pluginWorkspaceModel.d.ts +1 -3
  174. package/dist/composables/useAutoGroup.d.ts +10 -0
  175. package/dist/composables/useBioTemplateComponents.d.ts +15 -3
  176. package/dist/composables/useBioTemplateControls.d.ts +5 -1
  177. package/dist/composables/useBioTemplatePackWorkspace.d.ts +2 -0
  178. package/dist/composables/useBioTemplatePresetWorkspace.d.ts +5 -1
  179. package/dist/composables/useBioTemplateWorkspace.d.ts +5 -1
  180. package/dist/composables/useChemicalFormula.d.ts +2 -1
  181. package/dist/composables/useDropdownState.d.ts +5 -0
  182. package/dist/composables/useExperimentSave.d.ts +5 -1
  183. package/dist/composables/useFileBrowser.d.ts +3 -2
  184. package/dist/composables/useFilePicker.d.ts +25 -13
  185. package/dist/composables/useFocusTrap.d.ts +2 -1
  186. package/dist/composables/useGroupAssignment.d.ts +5 -1
  187. package/dist/composables/useJobsStatusTray.d.ts +5 -5
  188. package/dist/composables/useMenuKeyboard.d.ts +3 -3
  189. package/dist/composables/usePlatformContext.d.ts +3 -0
  190. package/dist/composables/usePluginClient.d.ts +1 -1
  191. package/dist/composables/useRackEditor.d.ts +36 -1
  192. package/dist/composables/useSequenceUtils.d.ts +8 -0
  193. package/dist/composables/useTemplateCollection.d.ts +5 -1
  194. package/dist/composables/workspaceRecipes.d.ts +1 -0
  195. package/dist/composables-D6uqp0UF.js +591 -0
  196. package/dist/composables-D6uqp0UF.js.map +1 -0
  197. package/dist/{errors-BLuqMee5.js → experiment-DgllIc3I.js} +89 -333
  198. package/dist/experiment-DgllIc3I.js.map +1 -0
  199. package/dist/{experiment-utils-CV2Wza3z.js → experiment-utils-DTANyVKV.js} +68 -37
  200. package/dist/experiment-utils-DTANyVKV.js.map +1 -0
  201. package/dist/index.d.ts +2 -0
  202. package/dist/index.js +122 -17
  203. package/dist/index.js.map +1 -1
  204. package/dist/install.js +1 -2
  205. package/dist/install.js.map +1 -1
  206. package/dist/instrument.d.ts +6 -0
  207. package/dist/lcms.d.ts +11 -0
  208. package/dist/permissions.d.ts +2 -47
  209. package/dist/permissions.js +2 -26
  210. package/dist/permissions.js.map +1 -1
  211. package/dist/settings-BLr8lzw6.js +341 -0
  212. package/dist/settings-BLr8lzw6.js.map +1 -0
  213. package/dist/stores/auth.d.ts +2 -150
  214. package/dist/stores/experiment.d.ts +2 -106
  215. package/dist/stores/index.js +2 -2
  216. package/dist/stores/settings.d.ts +2 -44
  217. package/dist/styles.css +8608 -6950
  218. package/dist/tailwind.preset.js.map +1 -1
  219. package/dist/templates/adapters.d.ts +3 -0
  220. package/dist/templates/assayMatrixAdapters.d.ts +8 -1
  221. package/dist/templates/assayMatrixBuilder.d.ts +1 -0
  222. package/dist/templates/builderPresetControls.d.ts +1 -0
  223. package/dist/templates/calibrationCurveAdapters.d.ts +3 -0
  224. package/dist/templates/calibrationCurveBuilder.d.ts +1 -0
  225. package/dist/templates/catalog.d.ts +6 -2
  226. package/dist/templates/componentBindings.d.ts +31 -5
  227. package/dist/templates/componentPlateHelpers.d.ts +7 -1
  228. package/dist/templates/controlSchemas.d.ts +9 -0
  229. package/dist/templates/defaultBioTemplateBuilder.d.ts +1 -0
  230. package/dist/templates/doseResponseAdapters.d.ts +2 -0
  231. package/dist/templates/doseResponseBuilder.d.ts +1 -0
  232. package/dist/templates/elisaAssayCollectionBuilder.d.ts +1 -0
  233. package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts +1 -0
  234. package/dist/templates/flowCytometryPanelBuilder.d.ts +1 -0
  235. package/dist/templates/flowPanelAdapters.d.ts +3 -0
  236. package/dist/templates/index.d.ts +1 -1
  237. package/dist/templates/index.js +2 -3
  238. package/dist/templates/instrumentRunAdapters.d.ts +13 -2
  239. package/dist/templates/instrumentRunBuilder.d.ts +1 -0
  240. package/dist/templates/lcmsBatchCollectionBuilder.d.ts +1 -0
  241. package/dist/templates/packs.d.ts +4 -0
  242. package/dist/templates/plateMapAdapters.d.ts +2 -0
  243. package/dist/templates/plateMapBuilder.d.ts +1 -0
  244. package/dist/templates/presets.d.ts +6 -2
  245. package/dist/templates/protocolAdapters.d.ts +4 -0
  246. package/dist/templates/protocolStepsBuilder.d.ts +1 -0
  247. package/dist/templates/qpcrAdapters.d.ts +4 -0
  248. package/dist/templates/qpcrExpressionCollectionBuilder.d.ts +1 -0
  249. package/dist/templates/qpcrPlateBuilder.d.ts +1 -0
  250. package/dist/templates/reagentAdapters.d.ts +4 -0
  251. package/dist/templates/reagentListBuilder.d.ts +1 -0
  252. package/dist/templates/samplePrepAdapters.d.ts +3 -0
  253. package/dist/templates/samplePrepBuilder.d.ts +1 -0
  254. package/dist/templates/sampleSheetAdapters.d.ts +4 -0
  255. package/dist/templates/sampleSheetBuilder.d.ts +1 -0
  256. package/dist/templates/targetedMetabolomicsCollectionBuilder.d.ts +1 -0
  257. package/dist/templates/templateEnvelopes.d.ts +8 -0
  258. package/dist/templates/templatePackCollectionBuilder.d.ts +1 -0
  259. package/dist/templates/templatePresetCollectionBuilder.d.ts +2 -0
  260. package/dist/templates/templateValidators.d.ts +12 -0
  261. package/dist/templates/timeCourseAdapters.d.ts +4 -0
  262. package/dist/templates/timeCourseBuilder.d.ts +1 -0
  263. package/dist/templates/wellPlateScreenCollectionBuilder.d.ts +1 -0
  264. package/dist/templates/westernBlotAssayCollectionBuilder.d.ts +1 -0
  265. package/dist/templates-BU1pet28.js +12304 -0
  266. package/dist/templates-BU1pet28.js.map +1 -0
  267. package/dist/types/auth.d.ts +0 -27
  268. package/dist/types/componentLabTypes.d.ts +14 -7
  269. package/dist/types/componentWorkflowTypes.d.ts +26 -0
  270. package/dist/types/components.d.ts +40 -17
  271. package/dist/types/fileBrowserTypes.d.ts +13 -0
  272. package/dist/types/filePicker.d.ts +19 -1
  273. package/dist/types/generated-ui.d.ts +13 -0
  274. package/dist/types/index.d.ts +4 -4
  275. package/dist/types/index.js +1 -1
  276. package/dist/types/instrument.d.ts +43 -15
  277. package/dist/types/platform.d.ts +2 -0
  278. package/dist/utils/color.d.ts +6 -1
  279. package/dist/utils/formModelSync.d.ts +1 -0
  280. package/dist/utils/plotlyTemplate.d.ts +3 -0
  281. package/dist/utils/rack.d.ts +16 -0
  282. package/dist/utils/sampleTypeMarker.d.ts +23 -0
  283. package/dist/{validation-ChMyixAf.js → validation-Dmp9Q5W0.js} +3032 -838
  284. package/dist/validation-Dmp9Q5W0.js.map +1 -0
  285. package/package.json +17 -23
  286. package/src/__stories__/experiment-helpers.ts +8 -4
  287. package/src/__tests__/components/ActionMenu.test.ts +66 -0
  288. package/src/__tests__/components/AlertBox.test.ts +21 -0
  289. package/src/__tests__/components/AppAvatarMenu.test.ts +25 -0
  290. package/src/__tests__/components/AppTopBar.test.ts +79 -0
  291. package/src/__tests__/components/AppTopBarPageSelector.test.ts +20 -0
  292. package/src/__tests__/components/AppTopBarPillNav.test.ts +74 -0
  293. package/src/__tests__/components/ArtifactSelectorModal.test.ts +20 -6
  294. package/src/__tests__/components/AuditTrail.test.ts +38 -0
  295. package/src/__tests__/components/BaseCheckbox.test.ts +43 -0
  296. package/src/__tests__/components/BaseInput.test.ts +43 -0
  297. package/src/__tests__/components/BaseModal.test.ts +90 -0
  298. package/src/__tests__/components/BaseRadioGroup.test.ts +8 -0
  299. package/src/__tests__/components/BaseSlider.test.ts +116 -0
  300. package/src/__tests__/components/BaseToggle.test.ts +7 -0
  301. package/src/__tests__/components/BatchProgressList.test.ts +22 -14
  302. package/src/__tests__/components/BioTemplateExperimentWorkspaceView.test.ts +4 -4
  303. package/src/__tests__/components/BioTemplatePackWorkspaceView.test.ts +1 -1
  304. package/src/__tests__/components/BioTemplatePresetWorkspaceView.test.ts +8 -8
  305. package/src/__tests__/components/BioTemplateRenderer.test.ts +2 -2
  306. package/src/__tests__/components/Breadcrumb.test.ts +45 -0
  307. package/src/__tests__/components/CalendarGridPanel.test.ts +14 -0
  308. package/src/__tests__/components/ChartContainer.test.ts +23 -0
  309. package/src/__tests__/components/ChemicalFormula.test.ts +15 -0
  310. package/src/__tests__/components/CollapsibleCard.test.ts +12 -9
  311. package/src/__tests__/components/ComponentBindingRenderer.test.ts +45 -17
  312. package/src/__tests__/components/ConcentrationInput.test.ts +17 -2
  313. package/src/__tests__/components/DataFrame.test.ts +107 -4
  314. package/src/__tests__/components/DataStates.test.ts +0 -16
  315. package/src/__tests__/components/DatePicker.test.ts +10 -0
  316. package/src/__tests__/components/DoseCalculator.test.ts +47 -0
  317. package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +37 -34
  318. package/src/__tests__/components/EmptyState.test.ts +16 -1
  319. package/src/__tests__/components/ExperimentSelectorModal.test.ts +31 -3
  320. package/src/__tests__/components/ExperimentTimeline.test.ts +45 -0
  321. package/src/__tests__/components/FilePicker.state.test.ts +2 -2
  322. package/src/__tests__/components/FilePicker.test.ts +360 -13
  323. package/src/__tests__/components/FileUploader.test.ts +15 -0
  324. package/src/__tests__/components/FitPanel.test.ts +96 -0
  325. package/src/__tests__/components/FormulaInput.test.ts +97 -0
  326. package/src/__tests__/components/GeneratedPathInput.test.ts +168 -41
  327. package/src/__tests__/components/GeneratedPlotlyResult.test.ts +1 -1
  328. package/src/__tests__/components/GeneratedResultRenderer.test.ts +47 -2
  329. package/src/__tests__/components/InstrumentStateBadge.test.ts +50 -0
  330. package/src/__tests__/components/JobsStatusTray.test.ts +27 -0
  331. package/src/__tests__/components/MoleculeInput.test.ts +78 -0
  332. package/src/__tests__/components/MultiSelect.test.ts +6 -0
  333. package/src/__tests__/components/PlateEditor.test.ts +1134 -0
  334. package/src/__tests__/components/PlateEditorBindingInternal.test.ts +64 -0
  335. package/src/__tests__/components/PlotlyChart.test.ts +147 -1
  336. package/src/__tests__/components/ProgressBar.test.ts +18 -0
  337. package/src/__tests__/components/ProtocolStepEditor.test.ts +106 -18
  338. package/src/__tests__/components/ProtocolStepParameterField.test.ts +74 -29
  339. package/src/__tests__/components/ReagentList.presentation.test.ts +10 -5
  340. package/src/__tests__/components/ReagentList.test.ts +23 -0
  341. package/src/__tests__/components/ResourcePickerListInternal.test.ts +141 -0
  342. package/src/__tests__/components/RetiredStyles.test.ts +0 -6
  343. package/src/__tests__/components/SampleHierarchyTree.test.ts +102 -0
  344. package/src/__tests__/components/SampleLegend.test.ts +18 -0
  345. package/src/__tests__/components/SampleSelector.test.ts +92 -1
  346. package/src/__tests__/components/SampleSelectorSampleRow.test.ts +5 -2
  347. package/src/__tests__/components/ScheduleCalendar.test.ts +32 -0
  348. package/src/__tests__/components/ScientificNumber.test.ts +113 -0
  349. package/src/__tests__/components/SearchableSelect.test.ts +21 -0
  350. package/src/__tests__/components/SecretInput.test.ts +6 -0
  351. package/src/__tests__/components/SegmentedControl.test.ts +14 -0
  352. package/src/__tests__/components/SequenceInput.test.ts +81 -0
  353. package/src/__tests__/components/SettingsModal.schema.test.ts +5 -5
  354. package/src/__tests__/components/SettingsModal.test.ts +371 -23
  355. package/src/__tests__/components/Skeleton.test.ts +23 -0
  356. package/src/__tests__/components/SmartGroupFieldRecipe.test.ts +12 -0
  357. package/src/__tests__/components/SmartGroupModal.test.ts +69 -0
  358. package/src/__tests__/components/StepWizard.test.ts +75 -0
  359. package/src/__tests__/components/TagsInput.test.ts +16 -0
  360. package/src/__tests__/components/TimePicker.test.ts +66 -0
  361. package/src/__tests__/components/TimeRangeInput.test.ts +83 -0
  362. package/src/__tests__/components/UnitInput.test.ts +147 -0
  363. package/src/__tests__/components/WellEditPopupInternal.test.ts +434 -2
  364. package/src/__tests__/components/WellPlate.decoration.test.ts +18 -0
  365. package/src/__tests__/components/WellPlate.geometry.test.ts +13 -0
  366. package/src/__tests__/components/WellPlate.interaction.test.ts +213 -0
  367. package/src/__tests__/components/WellPlate.keyboard.test.ts +24 -0
  368. package/src/__tests__/components/WellPlate.rendering.test.ts +38 -19
  369. package/src/__tests__/components/WellPlate.sampleDrop.test.ts +19 -0
  370. package/src/__tests__/components/WellPlate.sampleTypeIndicator.test.ts +58 -0
  371. package/src/__tests__/composables/createFilePickerAdapter.test.ts +114 -1
  372. package/src/__tests__/composables/useBioTemplatePackWorkspace.test.ts +1 -1
  373. package/src/__tests__/composables/useBioTemplateWorkspace.test.ts +1 -1
  374. package/src/__tests__/composables/useChemicalFormula.test.ts +60 -0
  375. package/src/__tests__/composables/useControlSchema.test.ts +15 -5
  376. package/src/__tests__/composables/useDropdownState.test.ts +20 -1
  377. package/src/__tests__/composables/useGeneratedAnalysis.test.ts +52 -0
  378. package/src/__tests__/composables/usePickerNavigation.test.ts +61 -1
  379. package/src/__tests__/composables/usePlatformFilePickerAdapter.test.ts +18 -6
  380. package/src/__tests__/composables/useRackEditor.test.ts +270 -0
  381. package/src/__tests__/composables/useSequenceUtils.test.ts +28 -0
  382. package/src/__tests__/docs/frontendDocsCatalog.test.ts +44 -9
  383. package/src/__tests__/styles/baseControlsRules.test.ts +115 -0
  384. package/src/__tests__/styles/controlRefreshRules.test.ts +218 -0
  385. package/src/__tests__/styles/cssTokens.test.ts +7 -5
  386. package/src/__tests__/styles/darkModeRules.test.ts +47 -0
  387. package/src/__tests__/styles/menusShellRefresh.test.ts +75 -0
  388. package/src/__tests__/templates/templates.test.ts +65 -15
  389. package/src/__tests__/templates/templatesDeprecation.test.ts +78 -0
  390. package/src/__tests__/utils/permissions.test.ts +0 -68
  391. package/src/__tests__/utils/plotlyTemplate.test.ts +69 -0
  392. package/src/__tests__/utils/sampleTypeMarker.test.ts +54 -0
  393. package/src/components/ActionMenu.vue +44 -23
  394. package/src/components/AdductText.story.vue +18 -0
  395. package/src/components/AdductText.vue +7 -1
  396. package/src/components/AlertBox.vue +3 -7
  397. package/src/components/AppAvatarMenu.vue +12 -10
  398. package/src/components/AppSidebar.vue +1 -1
  399. package/src/components/AppTopBar.story.vue +47 -4
  400. package/src/components/AppTopBar.vue +16 -22
  401. package/src/components/ArtifactSelectorModal.story.vue +1 -1
  402. package/src/components/ArtifactSelectorModal.vue +48 -160
  403. package/src/components/AuditTrail.vue +26 -12
  404. package/src/components/AutoGroupModal.vue +1 -1
  405. package/src/components/BaseCheckbox.story.vue +58 -2
  406. package/src/components/BaseCheckbox.vue +21 -3
  407. package/src/components/BaseInput.story.vue +51 -0
  408. package/src/components/BaseInput.vue +62 -1
  409. package/src/components/BaseModal.story.vue +55 -0
  410. package/src/components/BaseModal.vue +83 -50
  411. package/src/components/BaseRadioGroup.vue +1 -1
  412. package/src/components/BaseSlider.story.vue +36 -0
  413. package/src/components/BaseSlider.vue +56 -8
  414. package/src/components/BaseToggle.vue +1 -7
  415. package/src/components/BatchProgressList.vue +50 -52
  416. package/src/components/BioTemplatePresetWorkspaceView.vue +1 -1
  417. package/src/components/Breadcrumb.story.vue +1 -1
  418. package/src/components/Breadcrumb.vue +50 -15
  419. package/src/components/ChartContainer.story.vue +42 -0
  420. package/src/components/ChartContainer.vue +22 -1
  421. package/src/components/ChemicalFormula.story.vue +11 -11
  422. package/src/components/ChemicalFormula.vue +1 -0
  423. package/src/components/CollapsibleCard.vue +12 -32
  424. package/src/components/ComponentBindingRenderer.vue +6 -8
  425. package/src/components/ConcentrationInput.story.vue +1 -1
  426. package/src/components/ConcentrationInput.vue +8 -14
  427. package/src/components/ControlWorkspaceView.vue +1 -1
  428. package/src/components/DataFrame.story.vue +45 -2
  429. package/src/components/DataFrame.vue +28 -13
  430. package/src/components/DatePicker.story.vue +11 -0
  431. package/src/components/DatePicker.vue +5 -5
  432. package/src/components/DateTimePicker.story.vue +1 -1
  433. package/src/components/DateTimePicker.vue +8 -5
  434. package/src/components/Divider.story.vue +1 -1
  435. package/src/components/DoseCalculator.vue +44 -51
  436. package/src/components/DoseCalculatorVolumeField.vue +22 -35
  437. package/src/components/DoseDesignWorkspaceView.vue +1 -1
  438. package/src/components/EmptyState.story.vue +4 -4
  439. package/src/components/EmptyState.vue +4 -2
  440. package/src/components/ExperimentPopover.story.vue +2 -2
  441. package/src/components/ExperimentPopover.vue +6 -4
  442. package/src/components/ExperimentSelectorModal.story.vue +2 -1
  443. package/src/components/ExperimentSelectorModal.vue +91 -261
  444. package/src/components/ExperimentTimeline.story.vue +29 -0
  445. package/src/components/ExperimentTimeline.vue +20 -0
  446. package/src/components/FilePicker.story.vue +65 -10
  447. package/src/components/FilePicker.vue +203 -121
  448. package/src/components/FitPanel.story.vue +72 -6
  449. package/src/components/FitPanel.vue +70 -18
  450. package/src/components/FormField.vue +2 -0
  451. package/src/components/FormulaInput.story.vue +6 -0
  452. package/src/components/FormulaInput.vue +49 -70
  453. package/src/components/GeneratedPathInput.story.vue +121 -8
  454. package/src/components/GeneratedPathInput.vue +155 -86
  455. package/src/components/GeneratedPlotlyResult.vue +1 -1
  456. package/src/components/GeneratedPluginView.vue +4 -4
  457. package/src/components/GeneratedResultRenderer.vue +19 -0
  458. package/src/components/InstrumentStateBadge.story.vue +41 -0
  459. package/src/components/InstrumentStateBadge.vue +24 -14
  460. package/src/components/JobsStatusTray.vue +30 -8
  461. package/src/components/MoleculeInput.vue +12 -7
  462. package/src/components/MultiSelect.vue +3 -3
  463. package/src/components/PlateEditor.story.vue +333 -0
  464. package/src/components/PlateEditor.vue +793 -0
  465. package/src/components/PlotlyChart.story.vue +37 -1
  466. package/src/components/PlotlyChart.vue +86 -16
  467. package/src/components/PluginWorkspaceView.props.ts +1 -7
  468. package/src/components/PluginWorkspaceView.vue +0 -4
  469. package/src/components/ProgressBar.story.vue +0 -30
  470. package/src/components/ProgressBar.vue +3 -53
  471. package/src/components/ProtocolStepEditor.story.vue +8 -0
  472. package/src/components/ProtocolStepEditor.vue +55 -145
  473. package/src/components/ProtocolStepParameterField.vue +55 -93
  474. package/src/components/ReagentList.presentation.ts +7 -6
  475. package/src/components/ReagentList.vue +18 -17
  476. package/src/components/SampleHierarchyTree.story.vue +19 -0
  477. package/src/components/SampleHierarchyTree.vue +47 -14
  478. package/src/components/SampleLegend.vue +12 -4
  479. package/src/components/SampleSelector.story.vue +5 -1
  480. package/src/components/SampleSelector.vue +25 -15
  481. package/src/components/SampleSelectorGroupNode.vue +10 -20
  482. package/src/components/SampleSelectorSampleRow.vue +7 -18
  483. package/src/components/ScheduleCalendar.story.vue +14 -0
  484. package/src/components/ScheduleCalendar.vue +13 -1
  485. package/src/components/ScientificNumber.story.vue +15 -2
  486. package/src/components/ScientificNumber.vue +22 -26
  487. package/src/components/SearchableSelect.vue +14 -9
  488. package/src/components/SecretInput.vue +1 -1
  489. package/src/components/SegmentedControl.story.vue +23 -0
  490. package/src/components/SegmentedControl.vue +6 -1
  491. package/src/components/SequenceInput.story.vue +27 -5
  492. package/src/components/SequenceInput.vue +74 -29
  493. package/src/components/SequenceProgressBar.vue +0 -1
  494. package/src/components/SettingsModal.schema.ts +4 -2
  495. package/src/components/SettingsModal.story.vue +83 -22
  496. package/src/components/SettingsModal.vue +338 -79
  497. package/src/components/Skeleton.vue +6 -35
  498. package/src/components/SmartGroup.types.ts +2 -2
  499. package/src/components/SmartGroupFieldRecipe.groups.ts +4 -1
  500. package/src/components/SmartGroupFieldRecipe.vue +14 -8
  501. package/src/components/SmartGroupManual.vue +14 -11
  502. package/src/components/StepWizard.vue +16 -19
  503. package/src/components/TagsInput.story.vue +16 -11
  504. package/src/components/TagsInput.vue +20 -3
  505. package/src/components/TimePicker.story.vue +38 -3
  506. package/src/components/TimePicker.vue +26 -11
  507. package/src/components/TimeRangeInput.story.vue +50 -1
  508. package/src/components/TimeRangeInput.vue +36 -17
  509. package/src/components/UnitInput.story.vue +1 -1
  510. package/src/components/UnitInput.vue +173 -107
  511. package/src/components/WellPlate.colors.ts +7 -6
  512. package/src/components/WellPlate.geometry.ts +3 -0
  513. package/src/components/WellPlate.interaction.ts +39 -5
  514. package/src/components/WellPlate.rendering.ts +21 -27
  515. package/src/components/WellPlate.sampleDrop.ts +20 -12
  516. package/src/components/WellPlate.story.vue +18 -7
  517. package/src/components/WellPlate.vue +28 -22
  518. package/src/components/index.ts +34 -31
  519. package/src/components/internal/AppTopBarPageSelectorInternal.vue +13 -7
  520. package/src/components/internal/AppTopBarPillNavInternal.vue +12 -7
  521. package/src/components/internal/CalendarGridPanelInternal.vue +1 -1
  522. package/src/components/internal/FilePickerListInternal.vue +318 -0
  523. package/src/components/internal/FilePickerPreviewInternal.vue +54 -52
  524. package/src/components/internal/PlateEditorBindingInternal.vue +37 -0
  525. package/src/components/internal/ResourcePickerListInternal.vue +237 -0
  526. package/src/components/internal/SettingsPaneHeadInternal.vue +41 -0
  527. package/src/components/internal/WellEditPopupInternal.vue +219 -146
  528. package/src/components/internal/WorkspaceShellInternal.vue +0 -6
  529. package/src/components/internal/filePickerPresentation.ts +30 -0
  530. package/src/components/internal/generatedJobsApi.ts +12 -0
  531. package/src/composables/autoGroup/index.ts +3 -0
  532. package/src/composables/controlSchemaAdapters.ts +0 -4
  533. package/src/composables/controlSchemaFormFields.ts +0 -4
  534. package/src/composables/controlSchemaTypes.ts +4 -43
  535. package/src/composables/createFilePickerAdapter.ts +90 -22
  536. package/src/composables/filePicker/localFiles.ts +1 -0
  537. package/src/composables/filePicker/usePickerNavigation.ts +29 -2
  538. package/src/composables/index.ts +2 -71
  539. package/src/composables/pluginWorkspaceModel.ts +0 -3
  540. package/src/composables/useAutoGroup.ts +10 -0
  541. package/src/composables/useBioTemplateComponents.ts +15 -3
  542. package/src/composables/useBioTemplateControls.ts +5 -1
  543. package/src/composables/useBioTemplatePackWorkspace.ts +2 -0
  544. package/src/composables/useBioTemplatePresetWorkspace.ts +5 -1
  545. package/src/composables/useBioTemplateWorkspace.ts +5 -1
  546. package/src/composables/useChemicalFormula.ts +39 -13
  547. package/src/composables/useDropdownState.ts +6 -1
  548. package/src/composables/useExperimentSave.ts +5 -1
  549. package/src/composables/useFileBrowser.ts +3 -2
  550. package/src/composables/useFilePicker.ts +98 -13
  551. package/src/composables/useFocusTrap.ts +9 -6
  552. package/src/composables/useGeneratedAnalysis.ts +38 -0
  553. package/src/composables/useGroupAssignment.ts +5 -1
  554. package/src/composables/useJobsStatusTray.ts +5 -5
  555. package/src/composables/useMenuKeyboard.ts +5 -3
  556. package/src/composables/usePlatformFilePickerAdapter.ts +26 -4
  557. package/src/composables/usePluginClient.ts +1 -1
  558. package/src/composables/usePluginWorkspace.ts +0 -1
  559. package/src/composables/useRackEditor.ts +202 -12
  560. package/src/composables/useSequenceUtils.ts +20 -2
  561. package/src/composables/useTemplateCollection.ts +5 -1
  562. package/src/composables/workspaceRecipes.ts +1 -0
  563. package/src/index.ts +9 -3
  564. package/src/instrument.ts +6 -0
  565. package/src/lcms.ts +11 -0
  566. package/src/permissions.ts +2 -59
  567. package/src/styles/components/action-menu.css +9 -38
  568. package/src/styles/components/adduct-text.css +15 -3
  569. package/src/styles/components/alert-box.css +19 -70
  570. package/src/styles/components/app-avatar-menu.css +22 -57
  571. package/src/styles/components/app-container.css +4 -4
  572. package/src/styles/components/app-layout.css +18 -18
  573. package/src/styles/components/app-page-selector.css +50 -105
  574. package/src/styles/components/app-pill-nav.css +24 -42
  575. package/src/styles/components/app-sidebar.css +2 -2
  576. package/src/styles/components/app-top-bar.css +78 -55
  577. package/src/styles/components/artifact-selector-modal.css +1 -211
  578. package/src/styles/components/audit-trail.css +45 -38
  579. package/src/styles/components/avatar.css +1 -1
  580. package/src/styles/components/batch-progress-list.css +179 -95
  581. package/src/styles/components/breadcrumb.css +34 -15
  582. package/src/styles/components/calendar.css +2 -8
  583. package/src/styles/components/chart-container.css +81 -38
  584. package/src/styles/components/checkbox.css +8 -6
  585. package/src/styles/components/chemical-formula.css +8 -6
  586. package/src/styles/components/collapsible-card.css +6 -46
  587. package/src/styles/components/concentration-input.css +1 -10
  588. package/src/styles/components/dataframe.css +48 -67
  589. package/src/styles/components/date-picker.css +124 -62
  590. package/src/styles/components/datetime-picker.css +81 -47
  591. package/src/styles/components/divider.css +2 -4
  592. package/src/styles/components/dose-calculator.css +9 -135
  593. package/src/styles/components/empty-state.css +26 -35
  594. package/src/styles/components/experiment-code-badge.css +1 -1
  595. package/src/styles/components/experiment-popover.css +16 -83
  596. package/src/styles/components/experiment-selector-modal.css +9 -226
  597. package/src/styles/components/experiment-timeline.css +120 -50
  598. package/src/styles/components/file-picker.css +323 -299
  599. package/src/styles/components/file-uploader.css +4 -6
  600. package/src/styles/components/fit-panel.css +108 -22
  601. package/src/styles/components/form-field.css +6 -4
  602. package/src/styles/components/formula-input.css +121 -48
  603. package/src/styles/components/group-assigner.css +1 -3
  604. package/src/styles/components/icon-button.css +15 -37
  605. package/src/styles/components/input.css +91 -2
  606. package/src/styles/components/instrument-monitor.css +37 -447
  607. package/src/styles/components/jobs-status-tray.css +82 -61
  608. package/src/styles/components/loading-spinner.css +18 -0
  609. package/src/styles/components/mobile-support-gate.css +15 -17
  610. package/src/styles/components/modal.css +44 -33
  611. package/src/styles/components/molecule-input.css +31 -16
  612. package/src/styles/components/multi-select.css +33 -29
  613. package/src/styles/components/number-input.css +1 -1
  614. package/src/styles/components/plate-editor.css +497 -0
  615. package/src/styles/components/popover.css +162 -0
  616. package/src/styles/components/progress-bar.css +1 -70
  617. package/src/styles/components/protocol-step-editor.css +21 -333
  618. package/src/styles/components/radio-group.css +9 -18
  619. package/src/styles/components/reagent-editor.css +3 -7
  620. package/src/styles/components/reagent-list.css +63 -69
  621. package/src/styles/components/resource-card.css +4 -6
  622. package/src/styles/components/resource-picker-list.css +212 -0
  623. package/src/styles/components/sample-hierarchy-tree.css +83 -65
  624. package/src/styles/components/sample-legend.css +18 -7
  625. package/src/styles/components/sample-selector.css +41 -68
  626. package/src/styles/components/schedule-calendar.css +59 -54
  627. package/src/styles/components/scientific-number.css +72 -18
  628. package/src/styles/components/searchable-select.css +17 -26
  629. package/src/styles/components/secret-input.css +20 -23
  630. package/src/styles/components/section-card.css +3 -5
  631. package/src/styles/components/segmented-control.css +14 -1
  632. package/src/styles/components/select.css +19 -8
  633. package/src/styles/components/sequence-input.css +85 -37
  634. package/src/styles/components/sequence-progress-bar.css +18 -37
  635. package/src/styles/components/settings-modal.css +683 -34
  636. package/src/styles/components/skeleton.css +24 -23
  637. package/src/styles/components/slider.css +74 -8
  638. package/src/styles/components/smart-group.css +27 -39
  639. package/src/styles/components/status-indicator.css +1 -1
  640. package/src/styles/components/step-wizard.css +62 -99
  641. package/src/styles/components/tabs.css +2 -6
  642. package/src/styles/components/tags-input.css +64 -54
  643. package/src/styles/components/textarea.css +2 -2
  644. package/src/styles/components/time-picker.css +67 -38
  645. package/src/styles/components/time-range-input.css +16 -18
  646. package/src/styles/components/toast.css +1 -1
  647. package/src/styles/components/toggle.css +21 -31
  648. package/src/styles/components/tooltip.css +13 -15
  649. package/src/styles/components/unit-input.css +86 -36
  650. package/src/styles/components/well-edit-popup.css +111 -189
  651. package/src/styles/components/well-plate.css +7 -7
  652. package/src/styles/index.css +5 -7
  653. package/src/styles/variables.css +35 -7
  654. package/src/templates/adapters.ts +4 -0
  655. package/src/templates/assayMatrixAdapters.ts +8 -1
  656. package/src/templates/assayMatrixBuilder.ts +1 -0
  657. package/src/templates/builderPresetControls.ts +1 -0
  658. package/src/templates/calibrationCurveAdapters.ts +3 -0
  659. package/src/templates/calibrationCurveBuilder.ts +1 -0
  660. package/src/templates/catalog.ts +6 -2
  661. package/src/templates/componentBindingCatalog.ts +1 -1
  662. package/src/templates/componentBindings.ts +31 -5
  663. package/src/templates/componentDoseResponseProps.ts +0 -1
  664. package/src/templates/componentPlateHelpers.ts +22 -1
  665. package/src/templates/componentPlateMapProps.ts +7 -5
  666. package/src/templates/componentQpcrPlateProps.ts +0 -1
  667. package/src/templates/controlSchemas.ts +9 -0
  668. package/src/templates/defaultBioTemplateBuilder.ts +1 -0
  669. package/src/templates/doseResponseAdapters.ts +2 -0
  670. package/src/templates/doseResponseBuilder.ts +1 -0
  671. package/src/templates/elisaAssayCollectionBuilder.ts +1 -0
  672. package/src/templates/flowCytometryAssayCollectionBuilder.ts +1 -0
  673. package/src/templates/flowCytometryPanelBuilder.ts +1 -0
  674. package/src/templates/flowPanelAdapters.ts +3 -0
  675. package/src/templates/index.ts +4 -0
  676. package/src/templates/instrumentRunAdapters.ts +13 -2
  677. package/src/templates/instrumentRunBuilder.ts +1 -0
  678. package/src/templates/lcmsBatchCollectionBuilder.ts +1 -0
  679. package/src/templates/packs.ts +4 -0
  680. package/src/templates/plateMapAdapters.ts +2 -0
  681. package/src/templates/plateMapBuilder.ts +1 -0
  682. package/src/templates/presets.ts +6 -2
  683. package/src/templates/protocolAdapters.ts +4 -0
  684. package/src/templates/protocolStepsBuilder.ts +1 -0
  685. package/src/templates/qpcrAdapters.ts +4 -0
  686. package/src/templates/qpcrExpressionCollectionBuilder.ts +1 -0
  687. package/src/templates/qpcrPlateBuilder.ts +1 -0
  688. package/src/templates/reagentAdapters.ts +4 -0
  689. package/src/templates/reagentListBuilder.ts +1 -0
  690. package/src/templates/samplePrepAdapters.ts +3 -0
  691. package/src/templates/samplePrepBuilder.ts +1 -0
  692. package/src/templates/sampleSheetAdapters.ts +4 -0
  693. package/src/templates/sampleSheetBuilder.ts +1 -0
  694. package/src/templates/targetedMetabolomicsCollectionBuilder.ts +1 -0
  695. package/src/templates/templateEnvelopes.ts +8 -0
  696. package/src/templates/templatePackCollectionBuilder.ts +1 -0
  697. package/src/templates/templatePresetCollectionBuilder.ts +2 -0
  698. package/src/templates/templateValidators.ts +12 -0
  699. package/src/templates/timeCourseAdapters.ts +4 -0
  700. package/src/templates/timeCourseBuilder.ts +1 -0
  701. package/src/templates/wellPlateScreenCollectionBuilder.ts +1 -0
  702. package/src/templates/westernBlotAssayCollectionBuilder.ts +1 -0
  703. package/src/types/auth.ts +0 -37
  704. package/src/types/componentLabTypes.ts +16 -13
  705. package/src/types/componentWorkflowTypes.ts +29 -0
  706. package/src/types/components.ts +43 -20
  707. package/src/types/fileBrowserTypes.ts +15 -0
  708. package/src/types/filePicker.ts +19 -1
  709. package/src/types/generated-ui.ts +15 -0
  710. package/src/types/index.ts +12 -11
  711. package/src/types/instrument.ts +47 -15
  712. package/src/types/platform.ts +2 -0
  713. package/src/utils/color.ts +16 -1
  714. package/src/utils/formModelSync.ts +1 -1
  715. package/src/utils/plotlyTemplate.ts +39 -0
  716. package/src/utils/rack.ts +16 -0
  717. package/src/utils/sampleTypeMarker.ts +44 -0
  718. package/dist/ExperimentPopover-CJdNlCZb.js +0 -451
  719. package/dist/ExperimentPopover-CJdNlCZb.js.map +0 -1
  720. package/dist/ExperimentSelectorModal-DHE9k8TP.js +0 -507
  721. package/dist/ExperimentSelectorModal-DHE9k8TP.js.map +0 -1
  722. package/dist/SettingsModal-DELMkUFR.js +0 -492
  723. package/dist/SettingsModal-DELMkUFR.js.map +0 -1
  724. package/dist/Skeleton-jhF9wUkU.js +0 -485
  725. package/dist/Skeleton-jhF9wUkU.js.map +0 -1
  726. package/dist/__tests__/composables/usePluginConfig.test.d.ts +0 -15
  727. package/dist/chunk-BoAXSpZd.js +0 -33
  728. package/dist/components/AppPluginSwitcher.vue.d.ts +0 -40
  729. package/dist/components/ColorSlider.vue.d.ts +0 -34
  730. package/dist/components/DropdownButton.vue.d.ts +0 -49
  731. package/dist/components/FileBrowserModal.vue.d.ts +0 -99
  732. package/dist/components/InstrumentAlertLog.vue.d.ts +0 -22
  733. package/dist/components/InstrumentStatusCard.vue.d.ts +0 -13
  734. package/dist/components/LcmsSequenceTable.vue.d.ts +0 -54
  735. package/dist/components/PlateMapEditor.vue.d.ts +0 -50
  736. package/dist/components/RackEditor.vue.d.ts +0 -78
  737. package/dist/components/fileBrowserPresentation.d.ts +0 -10
  738. package/dist/components/internal/FileBrowserDialogInternal.vue.d.ts +0 -34
  739. package/dist/components/internal/FileBrowserListingInternal.vue.d.ts +0 -25
  740. package/dist/components/internal/FileBrowserToolbarInternal.vue.d.ts +0 -26
  741. package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +0 -28
  742. package/dist/components-Bbg_gtzF.js.map +0 -1
  743. package/dist/composables/useAsync.d.ts +0 -132
  744. package/dist/composables/useAuth.d.ts +0 -47
  745. package/dist/composables/useCommandHistory.d.ts +0 -33
  746. package/dist/composables/useOptimisticMutation.d.ts +0 -32
  747. package/dist/composables/usePasskey.d.ts +0 -10
  748. package/dist/composables/usePluginConfig.d.ts +0 -27
  749. package/dist/composables/useResourceCrud.d.ts +0 -44
  750. package/dist/composables/useWellPainting.d.ts +0 -39
  751. package/dist/composables/useWellPlateAdapter.d.ts +0 -40
  752. package/dist/composables/useWellPlateEditor.d.ts +0 -33
  753. package/dist/composables/useWellPlateValidation.d.ts +0 -31
  754. package/dist/composables-BCbYb2lA.js +0 -2356
  755. package/dist/composables-BCbYb2lA.js.map +0 -1
  756. package/dist/errors-BLuqMee5.js.map +0 -1
  757. package/dist/experiment-CVDRAnqp.js +0 -90
  758. package/dist/experiment-CVDRAnqp.js.map +0 -1
  759. package/dist/experiment-utils-CV2Wza3z.js.map +0 -1
  760. package/dist/plotly.min-c2Sez60c.js +0 -180634
  761. package/dist/plotly.min-c2Sez60c.js.map +0 -1
  762. package/dist/templates-NuaNHohp.js +0 -5260
  763. package/dist/templates-NuaNHohp.js.map +0 -1
  764. package/dist/useControlSchema-vLiRPUmj.js +0 -7301
  765. package/dist/useControlSchema-vLiRPUmj.js.map +0 -1
  766. package/dist/useDropdownState-C7hRiVQf.js +0 -63
  767. package/dist/useDropdownState-C7hRiVQf.js.map +0 -1
  768. package/dist/useExperimentSelector-G_CAOFTX.js +0 -328
  769. package/dist/useExperimentSelector-G_CAOFTX.js.map +0 -1
  770. package/dist/useFormBuilder-D37ajgS8.js +0 -729
  771. package/dist/useFormBuilder-D37ajgS8.js.map +0 -1
  772. package/dist/validation-ChMyixAf.js.map +0 -1
  773. package/src/__tests__/components/AppPluginSwitcher.test.ts +0 -44
  774. package/src/__tests__/components/DropdownButton.test.ts +0 -628
  775. package/src/__tests__/components/FileBrowserModal.test.ts +0 -460
  776. package/src/__tests__/components/InstrumentAlertLog.test.ts +0 -59
  777. package/src/__tests__/components/LcmsSequenceTable.test.ts +0 -79
  778. package/src/__tests__/components/PlateMapEditorToolbarInternal.test.ts +0 -54
  779. package/src/__tests__/components/RackEditor.test.ts +0 -169
  780. package/src/__tests__/composables/useAuth.test.ts +0 -233
  781. package/src/__tests__/composables/useCommandHistory.test.ts +0 -43
  782. package/src/__tests__/composables/useOptimisticMutation.test.ts +0 -40
  783. package/src/__tests__/composables/usePluginConfig.test.ts +0 -497
  784. package/src/__tests__/composables/useResourceCrud.test.ts +0 -56
  785. package/src/__tests__/composables/useWellPainting.test.ts +0 -52
  786. package/src/__tests__/composables/useWellPlateAdapter.test.ts +0 -50
  787. package/src/__tests__/composables/useWellPlateValidation.test.ts +0 -42
  788. package/src/components/AppPluginSwitcher.story.vue +0 -87
  789. package/src/components/AppPluginSwitcher.vue +0 -134
  790. package/src/components/ColorSlider.story.vue +0 -120
  791. package/src/components/ColorSlider.vue +0 -160
  792. package/src/components/DropdownButton.story.vue +0 -102
  793. package/src/components/DropdownButton.vue +0 -181
  794. package/src/components/FileBrowserModal.story.vue +0 -203
  795. package/src/components/FileBrowserModal.vue +0 -384
  796. package/src/components/InstrumentAlertLog.vue +0 -187
  797. package/src/components/InstrumentStatusCard.vue +0 -184
  798. package/src/components/LcmsSequenceTable.vue +0 -222
  799. package/src/components/PlateMapEditor.story.vue +0 -92
  800. package/src/components/PlateMapEditor.vue +0 -423
  801. package/src/components/RackEditor.story.vue +0 -100
  802. package/src/components/RackEditor.vue +0 -429
  803. package/src/components/fileBrowserPresentation.ts +0 -39
  804. package/src/components/internal/FileBrowserDialogInternal.vue +0 -75
  805. package/src/components/internal/FileBrowserListingInternal.vue +0 -197
  806. package/src/components/internal/FileBrowserToolbarInternal.vue +0 -136
  807. package/src/components/internal/FilePickerTreeInternal.vue +0 -238
  808. package/src/components/internal/PlateMapEditorToolbarInternal.vue +0 -128
  809. package/src/composables/useAsync.ts +0 -327
  810. package/src/composables/useAuth.ts +0 -458
  811. package/src/composables/useCommandHistory.ts +0 -117
  812. package/src/composables/useOptimisticMutation.ts +0 -97
  813. package/src/composables/usePasskey.ts +0 -216
  814. package/src/composables/usePluginConfig.ts +0 -252
  815. package/src/composables/useResourceCrud.ts +0 -235
  816. package/src/composables/useWellPainting.ts +0 -167
  817. package/src/composables/useWellPlateAdapter.ts +0 -151
  818. package/src/composables/useWellPlateEditor.ts +0 -415
  819. package/src/composables/useWellPlateValidation.ts +0 -89
  820. package/src/plotly-dist.d.ts +0 -3
  821. package/src/styles/components/app-plugin-switcher.css +0 -196
  822. package/src/styles/components/color-slider.css +0 -110
  823. package/src/styles/components/dropdown-button.css +0 -280
  824. package/src/styles/components/file-browser-modal.css +0 -489
  825. package/src/styles/components/lcms-sequence-table.css +0 -204
  826. package/src/styles/components/plate-map-editor.css +0 -464
  827. package/src/styles/components/rack-editor.css +0 -287
  828. /package/dist/__tests__/components/{AppPluginSwitcher.test.d.ts → AlertBox.test.d.ts} +0 -0
  829. /package/dist/__tests__/components/{DropdownButton.test.d.ts → AuditTrail.test.d.ts} +0 -0
  830. /package/dist/__tests__/components/{FileBrowserModal.test.d.ts → BaseCheckbox.test.d.ts} +0 -0
  831. /package/dist/__tests__/components/{InstrumentAlertLog.test.d.ts → BaseSlider.test.d.ts} +0 -0
  832. /package/dist/__tests__/components/{LcmsSequenceTable.test.d.ts → DoseCalculator.test.d.ts} +0 -0
  833. /package/dist/__tests__/components/{PlateMapEditorToolbarInternal.test.d.ts → FileUploader.test.d.ts} +0 -0
  834. /package/dist/__tests__/components/{RackEditor.test.d.ts → FitPanel.test.d.ts} +0 -0
  835. /package/dist/__tests__/{composables/useAuth.test.d.ts → components/FormulaInput.test.d.ts} +0 -0
  836. /package/dist/__tests__/{composables/useCommandHistory.test.d.ts → components/InstrumentStateBadge.test.d.ts} +0 -0
  837. /package/dist/__tests__/{composables/useOptimisticMutation.test.d.ts → components/MoleculeInput.test.d.ts} +0 -0
  838. /package/dist/__tests__/{composables/useResourceCrud.test.d.ts → components/PlateEditor.test.d.ts} +0 -0
  839. /package/dist/__tests__/{composables/useWellPainting.test.d.ts → components/PlateEditorBindingInternal.test.d.ts} +0 -0
  840. /package/dist/__tests__/{composables/useWellPlateAdapter.test.d.ts → components/ResourcePickerListInternal.test.d.ts} +0 -0
  841. /package/dist/__tests__/{composables/useWellPlateValidation.test.d.ts → components/SampleLegend.test.d.ts} +0 -0
@@ -1,460 +0,0 @@
1
- import { enableAutoUnmount, mount } from '@vue/test-utils'
2
- import { afterEach, describe, expect, it } from 'vitest'
3
- import { nextTick } from 'vue'
4
-
5
- enableAutoUnmount(afterEach)
6
-
7
- import FileBrowserModal from '../../components/FileBrowserModal.vue'
8
- import type { FileEntry, ServerMount } from '../../types/fileBrowserTypes'
9
-
10
- const MOUNTS: ServerMount[] = [
11
- {
12
- id: 'qe',
13
- label: '/mnt/instrument-qe',
14
- count: 4,
15
- children: [{ id: 'qe:2026-07', label: '2026-07', count: 12 }],
16
- },
17
- { id: 'nas', label: '/mnt/nas-shared', count: 18 },
18
- { id: 'seq', label: '/mnt/sequencer-01', available: false },
19
- ]
20
-
21
- const ENTRIES: FileEntry[] = [
22
- { name: 'calibration', path: 'raw/calibration', kind: 'directory', child_count: 2 },
23
- { name: 'blanks', path: 'raw/blanks', kind: 'directory', child_count: 6 },
24
- {
25
- name: 'HeLa_norm_0h_r1.raw',
26
- path: 'raw/HeLa_norm_0h_r1.raw',
27
- kind: 'file',
28
- size_bytes: 1_900_000_000,
29
- extension: '.raw',
30
- },
31
- {
32
- name: 'acquisition_log.txt',
33
- path: 'raw/acquisition_log.txt',
34
- kind: 'file',
35
- size_bytes: 48_000,
36
- extension: '.txt',
37
- matches_type_rules: false,
38
- },
39
- ]
40
-
41
- function mountBrowser(props: Record<string, unknown> = {}) {
42
- return mount(FileBrowserModal, {
43
- props: {
44
- modelValue: true,
45
- mounts: MOUNTS,
46
- mountId: 'qe',
47
- path: 'raw',
48
- entries: ENTRIES,
49
- breadcrumbs: [
50
- { label: '/mnt/instrument-qe', path: '' },
51
- { label: 'raw', path: 'raw' },
52
- ],
53
- ...props,
54
- },
55
- global: { stubs: { teleport: true } },
56
- })
57
- }
58
-
59
- function rowAt(wrapper: ReturnType<typeof mountBrowser>, index: number) {
60
- return wrapper.findAll('.mint-file-browser__row')[index]
61
- }
62
-
63
- describe('FileBrowserModal', () => {
64
- it('should render one row per entry', () => {
65
- expect(mountBrowser().findAll('.mint-file-browser__row')).toHaveLength(ENTRIES.length)
66
- })
67
-
68
- it('should render a row per configured mount', () => {
69
- expect(mountBrowser().findAll('.mint-file-browser__mount')).toHaveLength(4)
70
- })
71
-
72
- it('should mark an unavailable mount as offline', () => {
73
- expect(mountBrowser().text()).toContain('offline')
74
- })
75
-
76
- // The listing never lies about what is there: non-matching entries dim.
77
- it('should keep a non-matching entry in the listing', () => {
78
- expect(mountBrowser().text()).toContain('acquisition_log.txt')
79
- })
80
-
81
- it('should dim a non-matching entry when dimNonMatching is set', () => {
82
- expect(rowAt(mountBrowser(), 3).classes()).toContain('mint-file-browser__row--dimmed')
83
- })
84
-
85
- it('should not dim a non-matching entry when dimNonMatching is false', () => {
86
- const wrapper = mountBrowser({ dimNonMatching: false })
87
-
88
- expect(rowAt(wrapper, 3).classes()).not.toContain('mint-file-browser__row--dimmed')
89
- })
90
-
91
- it('should not dim a matching entry', () => {
92
- expect(rowAt(mountBrowser(), 2).classes()).not.toContain('mint-file-browser__row--dimmed')
93
- })
94
-
95
- // Ticking a folder takes the whole directory; clicking the row opens it.
96
- it('should emit navigate when a directory row is clicked', async () => {
97
- const wrapper = mountBrowser()
98
- await rowAt(wrapper, 0).trigger('click')
99
-
100
- expect(wrapper.emitted('navigate')?.[0]?.[0]).toMatchObject({ path: 'raw/calibration' })
101
- })
102
-
103
- it('should not emit navigate when a file row is clicked', async () => {
104
- const wrapper = mountBrowser()
105
- await rowAt(wrapper, 2).trigger('click')
106
-
107
- expect(wrapper.emitted('navigate')).toBeUndefined()
108
- })
109
-
110
- it('should select the whole folder when a directory checkbox is ticked', async () => {
111
- const wrapper = mountBrowser()
112
- await rowAt(wrapper, 0).find('.mint-file-browser__checkbox').setValue(true)
113
-
114
- expect(wrapper.emitted('update:selected')?.[0]?.[0]).toMatchObject([
115
- { path: 'raw/calibration', kind: 'directory' },
116
- ])
117
- })
118
-
119
- // setValue only dispatches `change`; a real user also clicks, and it is the
120
- // @click.stop that keeps the tick from bubbling into a navigation.
121
- it('should not navigate when a directory checkbox is clicked', async () => {
122
- const wrapper = mountBrowser()
123
- const checkbox = rowAt(wrapper, 0).find('.mint-file-browser__checkbox')
124
- await checkbox.trigger('click')
125
- await checkbox.setValue(true)
126
-
127
- expect(wrapper.emitted('navigate')).toBeUndefined()
128
- })
129
-
130
- // The row is a div, so this button is the only thing Tab can reach.
131
- it('should expose a focusable open button on a directory row', () => {
132
- expect(rowAt(mountBrowser(), 0).find('button.mint-file-browser__open').exists()).toBe(true)
133
- })
134
-
135
- it('should not expose an open button on a file row', () => {
136
- expect(rowAt(mountBrowser(), 2).find('button.mint-file-browser__open').exists()).toBe(false)
137
- })
138
-
139
- it('should navigate when the open button is activated', async () => {
140
- const wrapper = mountBrowser()
141
- await rowAt(wrapper, 0).find('button.mint-file-browser__open').trigger('click')
142
-
143
- expect(wrapper.emitted('navigate')?.[0]?.[0]).toMatchObject({ path: 'raw/calibration' })
144
- })
145
-
146
- it('should not select when the open button is activated', async () => {
147
- const wrapper = mountBrowser()
148
- await rowAt(wrapper, 0).find('button.mint-file-browser__open').trigger('click')
149
-
150
- expect(wrapper.emitted('update:selected')).toBeUndefined()
151
- })
152
-
153
- it('should label the open button with the folder name', () => {
154
- const button = rowAt(mountBrowser(), 0).find('button.mint-file-browser__open')
155
-
156
- expect(button.attributes('aria-label')).toBe('Open calibration')
157
- })
158
-
159
- it('should describe a ticked folder by its child count', async () => {
160
- const wrapper = mountBrowser({
161
- selected: [
162
- { mount_id: 'qe', path: 'raw/blanks', name: 'blanks', kind: 'directory', child_count: 6 },
163
- ],
164
- })
165
-
166
- // "items", not "files": the server counts every visible entry, subdirectories included.
167
- expect(wrapper.text()).toContain('whole folder, 6 items')
168
- })
169
-
170
- it('should emit selectFolder for the directory being viewed', async () => {
171
- const wrapper = mountBrowser()
172
- await wrapper.find('.mint-file-browser__select-folder').trigger('click')
173
-
174
- expect(wrapper.emitted('selectFolder')?.[0]?.[0]).toMatchObject({ mount_id: 'qe', path: 'raw' })
175
- })
176
-
177
- it('should show the local picker button by default', () => {
178
- expect(mountBrowser().find('.mint-file-browser__local').exists()).toBe(true)
179
- })
180
-
181
- it('should hide the local picker when showLocalPicker is false', () => {
182
- expect(
183
- mountBrowser({ showLocalPicker: false }).find('.mint-file-browser__local').exists(),
184
- ).toBe(false)
185
- })
186
-
187
- it('should emit chooseLocal when the local picker is clicked', async () => {
188
- const wrapper = mountBrowser()
189
- await wrapper.find('.mint-file-browser__local').trigger('click')
190
-
191
- expect(wrapper.emitted('chooseLocal')).toHaveLength(1)
192
- })
193
-
194
- it('should render the type rules', () => {
195
- expect(mountBrowser({ typeRules: ['.raw', '.mzML'] }).text()).toContain('.raw .mzML')
196
- })
197
-
198
- it('should report how many entries match the type rules', () => {
199
- expect(mountBrowser({ totalCount: 1284, matchCount: 9 }).text()).toContain(
200
- '9 match the type rules',
201
- )
202
- })
203
-
204
- it('should summarise the selection count', () => {
205
- const wrapper = mountBrowser({
206
- selected: [
207
- { mount_id: 'qe', path: 'raw/blanks', name: 'blanks', kind: 'directory' },
208
- { mount_id: 'qe', path: 'raw/a.raw', name: 'a.raw', kind: 'file' },
209
- ],
210
- })
211
-
212
- expect(wrapper.text()).toContain('2 selected')
213
- })
214
-
215
- it('should render a chip per selected item', () => {
216
- const wrapper = mountBrowser({
217
- selected: [
218
- { mount_id: 'qe', path: 'raw/blanks', name: 'blanks', kind: 'directory' },
219
- { mount_id: 'qe', path: 'raw/a.raw', name: 'a.raw', kind: 'file' },
220
- ],
221
- })
222
-
223
- expect(wrapper.findAll('.mint-file-browser__chip')).toHaveLength(2)
224
- })
225
-
226
- it('should clear the selection', async () => {
227
- const wrapper = mountBrowser({
228
- selected: [{ mount_id: 'qe', path: 'raw/a.raw', name: 'a.raw', kind: 'file' }],
229
- })
230
- await wrapper.find('.mint-file-browser__clear').trigger('click')
231
-
232
- expect(wrapper.emitted('update:selected')?.[0]?.[0]).toEqual([])
233
- })
234
-
235
- it('should remove one item from the selection via its chip', async () => {
236
- const wrapper = mountBrowser({
237
- selected: [
238
- { mount_id: 'qe', path: 'raw/blanks', name: 'blanks', kind: 'directory' },
239
- { mount_id: 'qe', path: 'raw/a.raw', name: 'a.raw', kind: 'file' },
240
- ],
241
- })
242
- await wrapper.findAll('.mint-file-browser__chip-remove')[0].trigger('click')
243
-
244
- expect(wrapper.emitted('update:selected')?.[0]?.[0]).toMatchObject([{ path: 'raw/a.raw' }])
245
- })
246
-
247
- it('should confirm with the current selection', async () => {
248
- const wrapper = mountBrowser({
249
- selected: [{ mount_id: 'qe', path: 'raw/a.raw', name: 'a.raw', kind: 'file' }],
250
- })
251
- await wrapper.find('.mint-file-browser__confirm').trigger('click')
252
-
253
- expect(wrapper.emitted('confirm')?.[0]?.[0]).toMatchObject([{ path: 'raw/a.raw' }])
254
- })
255
-
256
- it('should disable confirming an empty selection', () => {
257
- expect(mountBrowser().find('.mint-file-browser__confirm').attributes('disabled')).toBeDefined()
258
- })
259
-
260
- it('should emit navigate for the parent when the back button is used', async () => {
261
- const wrapper = mountBrowser({ parent: '' })
262
- await wrapper.find('.mint-file-browser__back').trigger('click')
263
-
264
- expect(wrapper.emitted('navigate')?.[0]?.[0]).toMatchObject({ mount_id: 'qe', path: '' })
265
- })
266
-
267
- it('should disable the back button at a mount root', () => {
268
- const wrapper = mountBrowser({ path: '', parent: null })
269
-
270
- expect(wrapper.find('.mint-file-browser__back').attributes('disabled')).toBeDefined()
271
- })
272
-
273
- it('should emit navigate when a mount is chosen', async () => {
274
- const wrapper = mountBrowser()
275
- await wrapper.findAll('.mint-file-browser__mount')[1].trigger('click')
276
-
277
- expect(wrapper.emitted('navigate')?.[0]?.[0]).toMatchObject({
278
- mount_id: 'qe:2026-07',
279
- path: '',
280
- })
281
- })
282
-
283
- it('should not navigate to an unavailable mount', async () => {
284
- const wrapper = mountBrowser()
285
- await wrapper.findAll('.mint-file-browser__mount')[3].trigger('click')
286
-
287
- expect(wrapper.emitted('navigate')).toBeUndefined()
288
- })
289
-
290
- it('should emit search updates', async () => {
291
- const wrapper = mountBrowser()
292
- await wrapper.find('input[aria-label="Search this folder"]').setValue('hela')
293
-
294
- expect(wrapper.emitted('update:search')?.[0]?.[0]).toBe('hela')
295
- })
296
-
297
- it('should show an empty state when the directory has no entries', () => {
298
- expect(mountBrowser({ entries: [] }).text()).toContain('This folder is empty')
299
- })
300
-
301
- it('should show a loading skeleton while listing', () => {
302
- expect(mountBrowser({ loading: true }).find('.mint-file-browser__skeleton').exists()).toBe(true)
303
- })
304
-
305
- it('should surface a listing error', () => {
306
- expect(mountBrowser({ error: 'Mount is offline' }).text()).toContain('Mount is offline')
307
- })
308
-
309
- it('should state that mounts are read-only', () => {
310
- expect(mountBrowser().text()).toContain('Read-only · Select paths, not copies')
311
- })
312
- })
313
-
314
- describe('FileBrowserModal review fixes', () => {
315
- // A search filters server-side while totalCount stays the whole directory.
316
- it('should say how many rows are shown when a search narrows the listing', () => {
317
- const wrapper = mount(FileBrowserModal, {
318
- props: {
319
- modelValue: true,
320
- mounts: MOUNTS,
321
- mountId: 'qe',
322
- path: 'raw',
323
- entries: ENTRIES,
324
- totalCount: 1284,
325
- },
326
- global: { stubs: { teleport: true } },
327
- })
328
-
329
- expect(wrapper.text()).toContain('4 shown')
330
- })
331
-
332
- it('should not claim rows are hidden when nothing is filtered', () => {
333
- const wrapper = mount(FileBrowserModal, {
334
- props: {
335
- modelValue: true,
336
- mounts: MOUNTS,
337
- mountId: 'qe',
338
- path: 'raw',
339
- entries: ENTRIES,
340
- totalCount: 4,
341
- },
342
- global: { stubs: { teleport: true } },
343
- })
344
-
345
- expect(wrapper.text()).not.toContain('shown')
346
- })
347
-
348
- it('should report a capped listing', () => {
349
- const wrapper = mount(FileBrowserModal, {
350
- props: {
351
- modelValue: true,
352
- mounts: MOUNTS,
353
- mountId: 'qe',
354
- path: 'raw',
355
- entries: ENTRIES,
356
- totalCount: 4,
357
- truncated: true,
358
- },
359
- global: { stubs: { teleport: true } },
360
- })
361
-
362
- expect(wrapper.text()).toContain('listing capped')
363
- })
364
-
365
- it('should label a folder count as items rather than files', () => {
366
- const wrapper = mount(FileBrowserModal, {
367
- props: { modelValue: true, mounts: MOUNTS, mountId: 'qe', path: 'raw', entries: ENTRIES },
368
- global: { stubs: { teleport: true } },
369
- })
370
-
371
- expect(wrapper.text()).toContain('2 items')
372
- })
373
- })
374
-
375
- describe('FileBrowserModal polish', () => {
376
- it.each([{ loading: true }, { error: 'Offline' }, { mountId: '' }])(
377
- 'disables current-folder selection without a ready listing: %o',
378
- (props) => {
379
- const wrapper = mountBrowser(props)
380
- const button = wrapper.get('.mint-file-browser__select-folder')
381
- expect(button.attributes('disabled')).toBeDefined()
382
- },
383
- )
384
-
385
- it('distinguishes no configured mounts from an empty folder', () => {
386
- const wrapper = mountBrowser({ mounts: [], mountId: '', entries: [] })
387
- expect(wrapper.text()).toContain('No server mounts configured')
388
- })
389
-
390
- it('offers a retry after a browse failure', async () => {
391
- const wrapper = mountBrowser({ error: 'NAS offline' })
392
- await wrapper.get('button[aria-label="Retry folder listing"]').trigger('click')
393
- expect(wrapper.emitted('refresh')).toHaveLength(1)
394
- })
395
-
396
- it('keeps selections with separator characters in their mount IDs distinct', async () => {
397
- const wrapper = mountBrowser({
398
- mountId: 'a',
399
- entries: [{ name: 'x', path: 'b::c', kind: 'file' }],
400
- selected: [{ mount_id: 'a::b', path: 'c', name: 'c', kind: 'file' }],
401
- })
402
- await wrapper.get('input[type="checkbox"]').setValue(true)
403
- expect(wrapper.emitted('update:selected')?.[0]?.[0]).toHaveLength(2)
404
- })
405
- })
406
-
407
- describe('FileBrowserModal dialog workspace', () => {
408
- it('uses SDK actions and an accessible independently labelled dialog', () => {
409
- const wrapper = mountBrowser({ title: 'Choose instrument files' })
410
- expect(wrapper.get('[role="dialog"]').attributes('aria-label')).toBe('Choose instrument files')
411
- expect(wrapper.get('.mint-file-browser__confirm').classes()).toContain('mint-button--primary')
412
- expect(wrapper.get('.mint-file-browser__cancel').classes()).toContain('mint-button--secondary')
413
- expect(wrapper.get('[aria-label="Go to parent folder"]').classes()).toContain(
414
- 'mint-icon-button',
415
- )
416
- expect(wrapper.get('[aria-label="Search this folder"]').classes()).toContain('mint-input')
417
- })
418
-
419
- it('focuses an initially open dialog, traps Tab and restores focus and scroll on close', async () => {
420
- const launcher = document.createElement('button')
421
- document.body.append(launcher)
422
- launcher.focus()
423
- document.body.style.overflow = 'scroll'
424
- const wrapper = mount(FileBrowserModal, {
425
- attachTo: document.body,
426
- props: { modelValue: true, showLocalPicker: false },
427
- global: { stubs: { teleport: true } },
428
- })
429
- try {
430
- await nextTick()
431
- const close = wrapper.get('[aria-label="Close modal"]')
432
- expect(document.activeElement).toBe(close.element)
433
- expect(document.body.style.overflow).toBe('hidden')
434
- await close.trigger('keydown', { key: 'Tab', shiftKey: true })
435
- expect(document.activeElement).toBe(wrapper.get('.mint-file-browser__cancel').element)
436
- await wrapper.get('.mint-file-browser__cancel').trigger('keydown', { key: 'Tab' })
437
- expect(document.activeElement).toBe(close.element)
438
- await close.trigger('keydown', { key: 'Escape' })
439
- expect(wrapper.emitted('cancel')).toHaveLength(1)
440
- expect(wrapper.emitted('update:modelValue')?.[0]).toEqual([false])
441
- await wrapper.setProps({ modelValue: false })
442
- expect(document.activeElement).toBe(launcher)
443
- expect(document.body.style.overflow).toBe('scroll')
444
- } finally {
445
- wrapper.unmount()
446
- launcher.remove()
447
- document.body.style.overflow = ''
448
- }
449
- })
450
-
451
- it('restores the existing scroll setting when unmounted while open', async () => {
452
- document.body.style.overflow = 'auto'
453
- const wrapper = mountBrowser()
454
- await nextTick()
455
- expect(document.body.style.overflow).toBe('hidden')
456
- wrapper.unmount()
457
- expect(document.body.style.overflow).toBe('auto')
458
- document.body.style.overflow = ''
459
- })
460
- })
@@ -1,59 +0,0 @@
1
- import { mount } from '@vue/test-utils'
2
- import { describe, expect, expectTypeOf, it } from 'vitest'
3
- import type { VNode } from 'vue'
4
- import InstrumentAlertLog from '../../components/InstrumentAlertLog.vue'
5
- import type { InstrumentAlert } from '../../types'
6
-
7
- type EventKeyIsOptional = {} extends Pick<InstrumentAlert, 'event_key'> ? true : false
8
-
9
- function alert(message: string): InstrumentAlert {
10
- return {
11
- event_key: 'orbitrap-01:acquisition-stopped:42',
12
- instrument_id: 'orbitrap-01',
13
- level: 'critical',
14
- rule: 'acquisition-stopped',
15
- message,
16
- timestamp: '2026-07-22T08:30:00Z',
17
- }
18
- }
19
-
20
- function findAlertVNodeKey(vnode: VNode): VNode['key'] {
21
- const classes = vnode.props?.class
22
- if (typeof classes === 'string' && classes.split(' ').includes('mint-instrument-alert')) {
23
- return vnode.key
24
- }
25
- if (Array.isArray(vnode.children)) {
26
- for (const child of vnode.children) {
27
- if (typeof child !== 'object' || child === null) continue
28
- const key = findAlertVNodeKey(child as VNode)
29
- if (key !== null) return key
30
- }
31
- }
32
- if (vnode.component?.subTree) return findAlertVNodeKey(vnode.component.subTree)
33
- return null
34
- }
35
-
36
- describe('InstrumentAlertLog', () => {
37
- it('should require a stable event_key in the public alert type', () => {
38
- expectTypeOf<EventKeyIsOptional>().toEqualTypeOf<false>()
39
- })
40
-
41
- it('should retain the rendered alert when mutable content changes for the same event_key', async () => {
42
- const wrapper = mount(InstrumentAlertLog, {
43
- props: { alerts: [alert('Acquisition stopped')] },
44
- })
45
- const renderedAlert = wrapper.get('.mint-instrument-alert').element
46
-
47
- await wrapper.setProps({ alerts: [alert('Acquisition remains stopped')] })
48
-
49
- expect(wrapper.get('.mint-instrument-alert').element).toBe(renderedAlert)
50
- })
51
-
52
- it('should key each rendered alert by event_key', () => {
53
- const wrapper = mount(InstrumentAlertLog, {
54
- props: { alerts: [alert('Acquisition stopped')] },
55
- })
56
-
57
- expect(findAlertVNodeKey(wrapper.vm.$.subTree)).toBe('orbitrap-01:acquisition-stopped:42')
58
- })
59
- })
@@ -1,79 +0,0 @@
1
- import { mount } from '@vue/test-utils'
2
- import { describe, expect, it } from 'vitest'
3
- import LcmsSequenceTable from '../../components/LcmsSequenceTable.vue'
4
- import type { LcmsSequenceItem } from '../../lcms'
5
-
6
- function makeItems(): LcmsSequenceItem[] {
7
- return [
8
- {
9
- sample_type: 'Unknown',
10
- file_name: 'Batch_NEG_S1_001',
11
- sample_id: 'R:A1',
12
- path: '',
13
- instrument_method: 'C:\\Methods\\neg.meth',
14
- position: 'R:A1',
15
- injection_volume: 5,
16
- },
17
- {
18
- sample_type: 'Blank',
19
- file_name: 'Batch_NEG_Blank_002',
20
- sample_id: 'R:F9',
21
- path: '',
22
- instrument_method: 'C:\\Methods\\blank.meth',
23
- position: 'R:F9',
24
- injection_volume: 5,
25
- },
26
- ]
27
- }
28
-
29
- describe('LcmsSequenceTable', () => {
30
- it('renders Xcalibur sequence rows with method basenames', () => {
31
- const wrapper = mount(LcmsSequenceTable, {
32
- props: {
33
- items: makeItems(),
34
- },
35
- })
36
-
37
- expect(wrapper.text()).toContain('Batch_NEG_S1_001')
38
- expect(wrapper.text()).toContain('neg.meth')
39
- expect(wrapper.text()).toContain('Blank')
40
- })
41
-
42
- it('emits editable row actions', async () => {
43
- const wrapper = mount(LcmsSequenceTable, {
44
- props: {
45
- items: makeItems(),
46
- editable: true,
47
- },
48
- })
49
-
50
- const actions = wrapper.findAll('.mint-lcms-sequence-table__action')
51
- await actions[0].trigger('click')
52
- await actions[1].trigger('click')
53
-
54
- expect(wrapper.emitted('duplicate')?.[0]).toEqual([0])
55
- expect(wrapper.emitted('remove')?.[0]).toEqual([0])
56
- })
57
-
58
- it('reorders rows from the drag handle with Alt and the arrow keys', async () => {
59
- const wrapper = mount(LcmsSequenceTable, {
60
- props: { items: makeItems(), editable: true },
61
- })
62
-
63
- const handle = wrapper.findAll('.mint-lcms-sequence-table__drag-handle')[0]
64
- expect(handle.element.tagName).toBe('BUTTON')
65
- expect(handle.attributes('aria-label')).toContain('Reorder Batch_NEG_S1_001')
66
-
67
- await handle.trigger('keydown', { key: 'ArrowDown', altKey: true })
68
-
69
- expect(wrapper.emitted('reorder')?.[0]).toEqual([0, 1])
70
- })
71
-
72
- it('does not reorder from the keyboard when not editable', async () => {
73
- const wrapper = mount(LcmsSequenceTable, {
74
- props: { items: makeItems() },
75
- })
76
-
77
- expect(wrapper.find('.mint-lcms-sequence-table__drag-handle').exists()).toBe(false)
78
- })
79
- })
@@ -1,54 +0,0 @@
1
- import { mount } from '@vue/test-utils'
2
- import { describe, expect, it, vi } from 'vitest'
3
- import PlateMapEditorToolbarInternal from '../../components/internal/PlateMapEditorToolbarInternal.vue'
4
- import type { PlateMap } from '../../types'
5
-
6
- const plates: PlateMap[] = [
7
- { id: 'plate-1', name: 'Plate 1', format: 96, wells: {} },
8
- { id: 'plate-2', name: 'Plate 2', format: 96, wells: {} },
9
- ]
10
-
11
- function mountToolbar(props = {}) {
12
- return mount(PlateMapEditorToolbarInternal, {
13
- props: {
14
- plates,
15
- activePlateId: 'plate-1',
16
- plateWellCounts: { 'plate-1': 3, 'plate-2': 0 },
17
- canAddPlate: true,
18
- canUndo: false,
19
- canRedo: true,
20
- slotColorForPlate: vi.fn((_plateId: string, index: number) => (index === 0 ? '#ef4444' : '#22c55e')),
21
- ...props,
22
- },
23
- })
24
- }
25
-
26
- describe('PlateMapEditorToolbarInternal', () => {
27
- it('renders plate tabs, active state, and well counts', () => {
28
- const wrapper = mountToolbar()
29
-
30
- const tabs = wrapper.findAll('.mint-plate-editor__tab')
31
- expect(tabs).toHaveLength(2)
32
- expect(tabs[0].classes()).toContain('mint-plate-editor__tab--active')
33
- expect(wrapper.find('.mint-plate-editor__tab-count').text()).toBe('3')
34
- expect(wrapper.find('.mint-plate-editor__add-plate').exists()).toBe(true)
35
- })
36
-
37
- it('emits tab and action events', async () => {
38
- const wrapper = mountToolbar()
39
-
40
- await wrapper.findAll('.mint-plate-editor__tab')[1].trigger('click')
41
- await wrapper.findAll('.mint-plate-editor__tab-remove')[0].trigger('click')
42
- await wrapper.find('.mint-plate-editor__add-plate').trigger('click')
43
- await wrapper.find('[title="Redo (Ctrl+Shift+Z)"]').trigger('click')
44
- await wrapper.find('[title="Import"]').trigger('click')
45
- await wrapper.find('[title="Export JSON"]').trigger('click')
46
-
47
- expect(wrapper.emitted('select-plate')?.[0]).toEqual(['plate-2'])
48
- expect(wrapper.emitted('remove-plate')?.[0]).toEqual(['plate-1'])
49
- expect(wrapper.emitted('add-plate')).toHaveLength(1)
50
- expect(wrapper.emitted('redo')).toHaveLength(1)
51
- expect(wrapper.emitted('import')).toHaveLength(1)
52
- expect(wrapper.emitted('export-json')).toHaveLength(1)
53
- })
54
- })