@morscherlab/mint-sdk 1.2.10 → 1.3.0-beta.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (841) hide show
  1. package/README.md +45 -137
  2. package/dist/ResourcePickerListInternal-CFAw4vTZ.js +605 -0
  3. package/dist/ResourcePickerListInternal-CFAw4vTZ.js.map +1 -0
  4. package/dist/__stories__/experiment-helpers.d.ts +12 -1
  5. package/dist/__tests__/components/ScientificNumber.test.d.ts +1 -0
  6. package/dist/__tests__/components/SequenceInput.test.d.ts +1 -0
  7. package/dist/__tests__/components/Skeleton.test.d.ts +1 -0
  8. package/dist/__tests__/components/SmartGroupFieldRecipe.test.d.ts +1 -0
  9. package/dist/__tests__/components/SmartGroupModal.test.d.ts +1 -0
  10. package/dist/__tests__/components/StepWizard.test.d.ts +1 -0
  11. package/dist/__tests__/components/TimeRangeInput.test.d.ts +1 -0
  12. package/dist/__tests__/components/UnitInput.test.d.ts +1 -0
  13. package/dist/__tests__/components/WellPlate.keyboard.test.d.ts +1 -0
  14. package/dist/__tests__/components/WellPlate.sampleTypeIndicator.test.d.ts +1 -0
  15. package/dist/__tests__/composables/useChemicalFormula.test.d.ts +1 -0
  16. package/dist/__tests__/composables/useRackEditor.test.d.ts +1 -0
  17. package/dist/__tests__/composables/useSequenceUtils.test.d.ts +1 -0
  18. package/dist/__tests__/styles/baseControlsRules.test.d.ts +1 -0
  19. package/dist/__tests__/styles/controlRefreshRules.test.d.ts +1 -0
  20. package/dist/__tests__/styles/darkModeRules.test.d.ts +1 -0
  21. package/dist/__tests__/styles/menusShellRefresh.test.d.ts +1 -0
  22. package/dist/__tests__/templates/templatesDeprecation.test.d.ts +1 -0
  23. package/dist/__tests__/utils/plotlyTemplate.test.d.ts +1 -0
  24. package/dist/__tests__/utils/sampleTypeMarker.test.d.ts +1 -0
  25. package/dist/{analysisArtifactTypes-DQ0MjwHZ.js → analysisArtifactTypes-Cy3D0Ipg.js} +1 -1
  26. package/dist/{analysisArtifactTypes-DQ0MjwHZ.js.map → analysisArtifactTypes-Cy3D0Ipg.js.map} +1 -1
  27. package/dist/components/ActionMenu.vue.d.ts +17 -5
  28. package/dist/components/AdductText.vue.d.ts +3 -2
  29. package/dist/components/AlertBox.vue.d.ts +11 -14
  30. package/dist/components/AppAvatarMenu.vue.d.ts +18 -28
  31. package/dist/components/AppContainer.vue.d.ts +7 -11
  32. package/dist/components/AppLayout.vue.d.ts +11 -13
  33. package/dist/components/AppSidebar.vue.d.ts +30 -28
  34. package/dist/components/AppToastContainer.vue.d.ts +2 -1
  35. package/dist/components/AppTopBar.vue.d.ts +45 -44
  36. package/dist/components/ArtifactSaveDialog.vue.d.ts +3 -2
  37. package/dist/components/ArtifactSelectorModal.vue.d.ts +5 -6
  38. package/dist/components/AuditTrail.vue.d.ts +17 -18
  39. package/dist/components/AutoGroupModal.vue.d.ts +4 -3
  40. package/dist/components/Avatar.vue.d.ts +2 -1
  41. package/dist/components/BaseButton.vue.d.ts +11 -13
  42. package/dist/components/BaseCheckbox.vue.d.ts +7 -1
  43. package/dist/components/BaseInput.vue.d.ts +15 -2
  44. package/dist/components/BaseModal.vue.d.ts +20 -23
  45. package/dist/components/BasePill.vue.d.ts +10 -13
  46. package/dist/components/BaseRadioGroup.vue.d.ts +2 -1
  47. package/dist/components/BaseSelect.vue.d.ts +3 -2
  48. package/dist/components/BaseSlider.vue.d.ts +18 -1
  49. package/dist/components/BaseTabs.vue.d.ts +2 -1
  50. package/dist/components/BaseTextarea.vue.d.ts +2 -1
  51. package/dist/components/BaseToggle.vue.d.ts +2 -1
  52. package/dist/components/BatchProgressList.vue.d.ts +22 -26
  53. package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +7 -14
  54. package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +6 -13
  55. package/dist/components/BioTemplatePresetWorkspaceView.vue.d.ts +7 -14
  56. package/dist/components/BioTemplateRenderer.vue.d.ts +2 -1
  57. package/dist/components/Breadcrumb.vue.d.ts +13 -16
  58. package/dist/components/Calendar.vue.d.ts +21 -23
  59. package/dist/components/ChartContainer.vue.d.ts +19 -25
  60. package/dist/components/ChemicalFormula.vue.d.ts +7 -11
  61. package/dist/components/CollapsibleCard.vue.d.ts +7 -11
  62. package/dist/components/ComponentBindingRenderer.vue.d.ts +2 -1
  63. package/dist/components/ConcentrationInput.vue.d.ts +2 -1
  64. package/dist/components/ConfirmDialog.vue.d.ts +10 -13
  65. package/dist/components/ControlWorkspaceView.vue.d.ts +9 -18
  66. package/dist/components/DataFrame.vue.d.ts +27 -24
  67. package/dist/components/DatePicker.vue.d.ts +3 -6
  68. package/dist/components/DateTimePicker.vue.d.ts +3 -6
  69. package/dist/components/Divider.vue.d.ts +3 -2
  70. package/dist/components/DoseCalculator.vue.d.ts +2 -1
  71. package/dist/components/DoseCalculatorVolumeField.vue.d.ts +2 -1
  72. package/dist/components/DoseDesignWorkspaceView.vue.d.ts +9 -18
  73. package/dist/components/EmptyState.vue.d.ts +9 -12
  74. package/dist/components/ExperimentCodeBadge.vue.d.ts +2 -1
  75. package/dist/components/ExperimentDataViewer.vue.d.ts +13 -15
  76. package/dist/components/ExperimentPopover.vue.d.ts +3 -5
  77. package/dist/components/ExperimentSelectorModal.vue.d.ts +3 -4
  78. package/dist/components/ExperimentTimeline.vue.d.ts +13 -15
  79. package/dist/components/FilePicker.vue.d.ts +10 -5
  80. package/dist/components/FileUploader.vue.d.ts +8 -16
  81. package/dist/components/FitPanel.vue.d.ts +26 -16
  82. package/dist/components/FormActions.vue.d.ts +2 -1
  83. package/dist/components/FormBuilder.vue.d.ts +54 -250
  84. package/dist/components/FormField.vue.d.ts +14 -16
  85. package/dist/components/FormulaInput.vue.d.ts +2 -1
  86. package/dist/components/GeneratedPathInput.vue.d.ts +6 -5
  87. package/dist/components/GeneratedPlotlyResult.vue.d.ts +2 -1
  88. package/dist/components/GeneratedPluginView.vue.d.ts +2 -1
  89. package/dist/components/GeneratedResultRenderer.vue.d.ts +2 -1
  90. package/dist/components/GroupAssigner.vue.d.ts +2 -1
  91. package/dist/components/IconButton.vue.d.ts +7 -11
  92. package/dist/components/InstrumentStateBadge.vue.d.ts +4 -3
  93. package/dist/components/JobsStatusTray.vue.d.ts +13 -29
  94. package/dist/components/LayoutResizeHandle.vue.d.ts +2 -1
  95. package/dist/components/LoadingSpinner.vue.d.ts +2 -1
  96. package/dist/components/MobileSupportGate.vue.d.ts +5 -13
  97. package/dist/components/MoleculeInput.vue.d.ts +3 -4
  98. package/dist/components/MultiSelect.vue.d.ts +2 -1
  99. package/dist/components/NumberInput.vue.d.ts +2 -1
  100. package/dist/components/PlateEditor.vue.d.ts +147 -0
  101. package/dist/components/PlotlyChart.vue.d.ts +21 -31
  102. package/dist/components/PluginIcon.vue.d.ts +2 -1
  103. package/dist/components/PluginWorkspaceView.props.d.ts +2 -6
  104. package/dist/components/PluginWorkspaceView.vue.d.ts +23 -51
  105. package/dist/components/ProgressBar.vue.d.ts +4 -9
  106. package/dist/components/ProtocolStepEditor.vue.d.ts +7 -5
  107. package/dist/components/ProtocolStepParameterField.vue.d.ts +2 -1
  108. package/dist/components/ReagentEditor.vue.d.ts +2 -1
  109. package/dist/components/ReagentList.presentation.d.ts +2 -1
  110. package/dist/components/ReagentList.vue.d.ts +15 -17
  111. package/dist/components/ResourceCard.vue.d.ts +18 -17
  112. package/dist/components/RuntimeUpdateNotice.vue.d.ts +3 -2
  113. package/dist/components/SampleHierarchyTree.vue.d.ts +21 -15
  114. package/dist/components/SampleLegend.vue.d.ts +2 -1
  115. package/dist/components/SampleSelector.vue.d.ts +15 -21
  116. package/dist/components/SampleSelectorGroupNode.vue.d.ts +2 -1
  117. package/dist/components/SampleSelectorSampleRow.vue.d.ts +2 -5
  118. package/dist/components/ScheduleCalendar.vue.d.ts +34 -36
  119. package/dist/components/ScientificNumber.vue.d.ts +3 -2
  120. package/dist/components/SearchableSelect.vue.d.ts +14 -32
  121. package/dist/components/SecretInput.vue.d.ts +2 -1
  122. package/dist/components/SectionCard.vue.d.ts +13 -14
  123. package/dist/components/SegmentedControl.vue.d.ts +2 -1
  124. package/dist/components/SequenceInput.vue.d.ts +10 -21
  125. package/dist/components/SequenceProgressBar.vue.d.ts +2 -1
  126. package/dist/components/SettingsModal.schema.d.ts +1 -1
  127. package/dist/components/SettingsModal.vue.d.ts +28 -25
  128. package/dist/components/Skeleton.vue.d.ts +2 -1
  129. package/dist/components/SmartGroup.types.d.ts +2 -2
  130. package/dist/components/SmartGroupFieldRecipe.groups.d.ts +2 -0
  131. package/dist/components/SmartGroupFieldRecipe.vue.d.ts +4 -7
  132. package/dist/components/SmartGroupManual.vue.d.ts +3 -2
  133. package/dist/components/SmartGroupModal.vue.d.ts +6 -4
  134. package/dist/components/StatusIndicator.vue.d.ts +2 -1
  135. package/dist/components/StepWizard.vue.d.ts +26 -27
  136. package/dist/components/TagsInput.vue.d.ts +3 -5
  137. package/dist/components/ThemeToggle.vue.d.ts +2 -1
  138. package/dist/components/TimePicker.vue.d.ts +6 -6
  139. package/dist/components/TimeRangeInput.vue.d.ts +9 -2
  140. package/dist/components/Tooltip.vue.d.ts +8 -18
  141. package/dist/components/UnitInput.vue.d.ts +2 -1
  142. package/dist/components/WellPlate.colors.d.ts +2 -4
  143. package/dist/components/WellPlate.rendering.d.ts +7 -1
  144. package/dist/components/WellPlate.sampleDrop.d.ts +2 -0
  145. package/dist/components/WellPlate.vue.d.ts +22 -39
  146. package/dist/components/index.d.ts +34 -31
  147. package/dist/components/index.js +5 -8
  148. package/dist/components/internal/ActionItemInternal.vue.d.ts +11 -13
  149. package/dist/components/internal/AppTopBarPageSelectorInternal.vue.d.ts +14 -23
  150. package/dist/components/internal/AppTopBarPillNavInternal.vue.d.ts +2 -1
  151. package/dist/components/internal/CalendarGridPanelInternal.vue.d.ts +2 -1
  152. package/dist/components/internal/DataStateInternal.vue.d.ts +7 -11
  153. package/dist/components/internal/{FilePickerTreeInternal.vue.d.ts → FilePickerListInternal.vue.d.ts} +9 -6
  154. package/dist/components/internal/FilePickerPreviewInternal.vue.d.ts +4 -3
  155. package/dist/components/internal/FormFieldRendererInternal.vue.d.ts +16 -18
  156. package/dist/components/internal/FormSectionRenderer.vue.d.ts +36 -32
  157. package/dist/components/internal/PlateEditorBindingInternal.vue.d.ts +8 -0
  158. package/dist/components/internal/ResourcePickerListInternal.vue.d.ts +65 -0
  159. package/dist/components/internal/SettingsPaneHeadInternal.vue.d.ts +15 -0
  160. package/dist/components/internal/WellEditPopupInternal.vue.d.ts +12 -4
  161. package/dist/components/internal/WorkspaceControlsInternal.vue.d.ts +6 -13
  162. package/dist/components/internal/WorkspaceShellInternal.vue.d.ts +19 -42
  163. package/dist/components/internal/WorkspaceSidebarInternal.vue.d.ts +9 -19
  164. package/dist/components/internal/filePickerPresentation.d.ts +8 -0
  165. package/dist/components/internal/generatedJobsApi.d.ts +9 -0
  166. package/dist/{components-Bbg_gtzF.js → components-GDDvof8D.js} +7088 -5955
  167. package/dist/components-GDDvof8D.js.map +1 -0
  168. package/dist/composables/controlSchemaTypes.d.ts +4 -43
  169. package/dist/composables/createFilePickerAdapter.d.ts +5 -1
  170. package/dist/composables/filePicker/usePickerNavigation.d.ts +7 -2
  171. package/dist/composables/index.d.ts +2 -13
  172. package/dist/composables/index.js +7 -11
  173. package/dist/composables/pluginWorkspaceModel.d.ts +1 -3
  174. package/dist/composables/useAutoGroup.d.ts +10 -0
  175. package/dist/composables/useBioTemplateComponents.d.ts +15 -3
  176. package/dist/composables/useBioTemplateControls.d.ts +5 -1
  177. package/dist/composables/useBioTemplatePackWorkspace.d.ts +2 -0
  178. package/dist/composables/useBioTemplatePresetWorkspace.d.ts +5 -1
  179. package/dist/composables/useBioTemplateWorkspace.d.ts +5 -1
  180. package/dist/composables/useChemicalFormula.d.ts +2 -1
  181. package/dist/composables/useDropdownState.d.ts +5 -0
  182. package/dist/composables/useExperimentSave.d.ts +5 -1
  183. package/dist/composables/useFileBrowser.d.ts +3 -2
  184. package/dist/composables/useFilePicker.d.ts +25 -13
  185. package/dist/composables/useFocusTrap.d.ts +2 -1
  186. package/dist/composables/useGroupAssignment.d.ts +5 -1
  187. package/dist/composables/useJobsStatusTray.d.ts +5 -5
  188. package/dist/composables/useMenuKeyboard.d.ts +3 -3
  189. package/dist/composables/usePlatformContext.d.ts +3 -0
  190. package/dist/composables/usePluginClient.d.ts +1 -1
  191. package/dist/composables/useRackEditor.d.ts +36 -1
  192. package/dist/composables/useSequenceUtils.d.ts +8 -0
  193. package/dist/composables/useTemplateCollection.d.ts +5 -1
  194. package/dist/composables/workspaceRecipes.d.ts +1 -0
  195. package/dist/composables-D6uqp0UF.js +591 -0
  196. package/dist/composables-D6uqp0UF.js.map +1 -0
  197. package/dist/{errors-BLuqMee5.js → experiment-DgllIc3I.js} +89 -333
  198. package/dist/experiment-DgllIc3I.js.map +1 -0
  199. package/dist/{experiment-utils-CV2Wza3z.js → experiment-utils-DTANyVKV.js} +68 -37
  200. package/dist/experiment-utils-DTANyVKV.js.map +1 -0
  201. package/dist/index.d.ts +2 -0
  202. package/dist/index.js +122 -17
  203. package/dist/index.js.map +1 -1
  204. package/dist/install.js +1 -2
  205. package/dist/install.js.map +1 -1
  206. package/dist/instrument.d.ts +6 -0
  207. package/dist/lcms.d.ts +11 -0
  208. package/dist/permissions.d.ts +2 -47
  209. package/dist/permissions.js +2 -26
  210. package/dist/permissions.js.map +1 -1
  211. package/dist/settings-BLr8lzw6.js +341 -0
  212. package/dist/settings-BLr8lzw6.js.map +1 -0
  213. package/dist/stores/auth.d.ts +2 -150
  214. package/dist/stores/experiment.d.ts +2 -106
  215. package/dist/stores/index.js +2 -2
  216. package/dist/stores/settings.d.ts +2 -44
  217. package/dist/styles.css +8608 -6950
  218. package/dist/tailwind.preset.js.map +1 -1
  219. package/dist/templates/adapters.d.ts +3 -0
  220. package/dist/templates/assayMatrixAdapters.d.ts +8 -1
  221. package/dist/templates/assayMatrixBuilder.d.ts +1 -0
  222. package/dist/templates/builderPresetControls.d.ts +1 -0
  223. package/dist/templates/calibrationCurveAdapters.d.ts +3 -0
  224. package/dist/templates/calibrationCurveBuilder.d.ts +1 -0
  225. package/dist/templates/catalog.d.ts +6 -2
  226. package/dist/templates/componentBindings.d.ts +31 -5
  227. package/dist/templates/componentPlateHelpers.d.ts +7 -1
  228. package/dist/templates/controlSchemas.d.ts +9 -0
  229. package/dist/templates/defaultBioTemplateBuilder.d.ts +1 -0
  230. package/dist/templates/doseResponseAdapters.d.ts +2 -0
  231. package/dist/templates/doseResponseBuilder.d.ts +1 -0
  232. package/dist/templates/elisaAssayCollectionBuilder.d.ts +1 -0
  233. package/dist/templates/flowCytometryAssayCollectionBuilder.d.ts +1 -0
  234. package/dist/templates/flowCytometryPanelBuilder.d.ts +1 -0
  235. package/dist/templates/flowPanelAdapters.d.ts +3 -0
  236. package/dist/templates/index.d.ts +1 -1
  237. package/dist/templates/index.js +2 -3
  238. package/dist/templates/instrumentRunAdapters.d.ts +13 -2
  239. package/dist/templates/instrumentRunBuilder.d.ts +1 -0
  240. package/dist/templates/lcmsBatchCollectionBuilder.d.ts +1 -0
  241. package/dist/templates/packs.d.ts +4 -0
  242. package/dist/templates/plateMapAdapters.d.ts +2 -0
  243. package/dist/templates/plateMapBuilder.d.ts +1 -0
  244. package/dist/templates/presets.d.ts +6 -2
  245. package/dist/templates/protocolAdapters.d.ts +4 -0
  246. package/dist/templates/protocolStepsBuilder.d.ts +1 -0
  247. package/dist/templates/qpcrAdapters.d.ts +4 -0
  248. package/dist/templates/qpcrExpressionCollectionBuilder.d.ts +1 -0
  249. package/dist/templates/qpcrPlateBuilder.d.ts +1 -0
  250. package/dist/templates/reagentAdapters.d.ts +4 -0
  251. package/dist/templates/reagentListBuilder.d.ts +1 -0
  252. package/dist/templates/samplePrepAdapters.d.ts +3 -0
  253. package/dist/templates/samplePrepBuilder.d.ts +1 -0
  254. package/dist/templates/sampleSheetAdapters.d.ts +4 -0
  255. package/dist/templates/sampleSheetBuilder.d.ts +1 -0
  256. package/dist/templates/targetedMetabolomicsCollectionBuilder.d.ts +1 -0
  257. package/dist/templates/templateEnvelopes.d.ts +8 -0
  258. package/dist/templates/templatePackCollectionBuilder.d.ts +1 -0
  259. package/dist/templates/templatePresetCollectionBuilder.d.ts +2 -0
  260. package/dist/templates/templateValidators.d.ts +12 -0
  261. package/dist/templates/timeCourseAdapters.d.ts +4 -0
  262. package/dist/templates/timeCourseBuilder.d.ts +1 -0
  263. package/dist/templates/wellPlateScreenCollectionBuilder.d.ts +1 -0
  264. package/dist/templates/westernBlotAssayCollectionBuilder.d.ts +1 -0
  265. package/dist/templates-BU1pet28.js +12304 -0
  266. package/dist/templates-BU1pet28.js.map +1 -0
  267. package/dist/types/auth.d.ts +0 -27
  268. package/dist/types/componentLabTypes.d.ts +14 -7
  269. package/dist/types/componentWorkflowTypes.d.ts +26 -0
  270. package/dist/types/components.d.ts +40 -17
  271. package/dist/types/fileBrowserTypes.d.ts +13 -0
  272. package/dist/types/filePicker.d.ts +19 -1
  273. package/dist/types/generated-ui.d.ts +13 -0
  274. package/dist/types/index.d.ts +4 -4
  275. package/dist/types/index.js +1 -1
  276. package/dist/types/instrument.d.ts +43 -15
  277. package/dist/types/platform.d.ts +2 -0
  278. package/dist/utils/color.d.ts +6 -1
  279. package/dist/utils/formModelSync.d.ts +1 -0
  280. package/dist/utils/plotlyTemplate.d.ts +3 -0
  281. package/dist/utils/rack.d.ts +16 -0
  282. package/dist/utils/sampleTypeMarker.d.ts +23 -0
  283. package/dist/{validation-ChMyixAf.js → validation-Dmp9Q5W0.js} +3032 -838
  284. package/dist/validation-Dmp9Q5W0.js.map +1 -0
  285. package/package.json +17 -23
  286. package/src/__stories__/experiment-helpers.ts +8 -4
  287. package/src/__tests__/components/ActionMenu.test.ts +66 -0
  288. package/src/__tests__/components/AlertBox.test.ts +21 -0
  289. package/src/__tests__/components/AppAvatarMenu.test.ts +25 -0
  290. package/src/__tests__/components/AppTopBar.test.ts +79 -0
  291. package/src/__tests__/components/AppTopBarPageSelector.test.ts +20 -0
  292. package/src/__tests__/components/AppTopBarPillNav.test.ts +74 -0
  293. package/src/__tests__/components/ArtifactSelectorModal.test.ts +20 -6
  294. package/src/__tests__/components/AuditTrail.test.ts +38 -0
  295. package/src/__tests__/components/BaseCheckbox.test.ts +43 -0
  296. package/src/__tests__/components/BaseInput.test.ts +43 -0
  297. package/src/__tests__/components/BaseModal.test.ts +90 -0
  298. package/src/__tests__/components/BaseRadioGroup.test.ts +8 -0
  299. package/src/__tests__/components/BaseSlider.test.ts +116 -0
  300. package/src/__tests__/components/BaseToggle.test.ts +7 -0
  301. package/src/__tests__/components/BatchProgressList.test.ts +22 -14
  302. package/src/__tests__/components/BioTemplateExperimentWorkspaceView.test.ts +4 -4
  303. package/src/__tests__/components/BioTemplatePackWorkspaceView.test.ts +1 -1
  304. package/src/__tests__/components/BioTemplatePresetWorkspaceView.test.ts +8 -8
  305. package/src/__tests__/components/BioTemplateRenderer.test.ts +2 -2
  306. package/src/__tests__/components/Breadcrumb.test.ts +45 -0
  307. package/src/__tests__/components/CalendarGridPanel.test.ts +14 -0
  308. package/src/__tests__/components/ChartContainer.test.ts +23 -0
  309. package/src/__tests__/components/ChemicalFormula.test.ts +15 -0
  310. package/src/__tests__/components/CollapsibleCard.test.ts +12 -9
  311. package/src/__tests__/components/ComponentBindingRenderer.test.ts +45 -17
  312. package/src/__tests__/components/ConcentrationInput.test.ts +17 -2
  313. package/src/__tests__/components/DataFrame.test.ts +107 -4
  314. package/src/__tests__/components/DataStates.test.ts +0 -16
  315. package/src/__tests__/components/DatePicker.test.ts +10 -0
  316. package/src/__tests__/components/DoseCalculator.test.ts +47 -0
  317. package/src/__tests__/components/DoseCalculatorVolumeField.test.ts +37 -34
  318. package/src/__tests__/components/EmptyState.test.ts +16 -1
  319. package/src/__tests__/components/ExperimentSelectorModal.test.ts +31 -3
  320. package/src/__tests__/components/ExperimentTimeline.test.ts +45 -0
  321. package/src/__tests__/components/FilePicker.state.test.ts +2 -2
  322. package/src/__tests__/components/FilePicker.test.ts +360 -13
  323. package/src/__tests__/components/FileUploader.test.ts +15 -0
  324. package/src/__tests__/components/FitPanel.test.ts +96 -0
  325. package/src/__tests__/components/FormulaInput.test.ts +97 -0
  326. package/src/__tests__/components/GeneratedPathInput.test.ts +168 -41
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  688. package/src/templates/reagentAdapters.ts +4 -0
  689. package/src/templates/reagentListBuilder.ts +1 -0
  690. package/src/templates/samplePrepAdapters.ts +3 -0
  691. package/src/templates/samplePrepBuilder.ts +1 -0
  692. package/src/templates/sampleSheetAdapters.ts +4 -0
  693. package/src/templates/sampleSheetBuilder.ts +1 -0
  694. package/src/templates/targetedMetabolomicsCollectionBuilder.ts +1 -0
  695. package/src/templates/templateEnvelopes.ts +8 -0
  696. package/src/templates/templatePackCollectionBuilder.ts +1 -0
  697. package/src/templates/templatePresetCollectionBuilder.ts +2 -0
  698. package/src/templates/templateValidators.ts +12 -0
  699. package/src/templates/timeCourseAdapters.ts +4 -0
  700. package/src/templates/timeCourseBuilder.ts +1 -0
  701. package/src/templates/wellPlateScreenCollectionBuilder.ts +1 -0
  702. package/src/templates/westernBlotAssayCollectionBuilder.ts +1 -0
  703. package/src/types/auth.ts +0 -37
  704. package/src/types/componentLabTypes.ts +16 -13
  705. package/src/types/componentWorkflowTypes.ts +29 -0
  706. package/src/types/components.ts +43 -20
  707. package/src/types/fileBrowserTypes.ts +15 -0
  708. package/src/types/filePicker.ts +19 -1
  709. package/src/types/generated-ui.ts +15 -0
  710. package/src/types/index.ts +12 -11
  711. package/src/types/instrument.ts +47 -15
  712. package/src/types/platform.ts +2 -0
  713. package/src/utils/color.ts +16 -1
  714. package/src/utils/formModelSync.ts +1 -1
  715. package/src/utils/plotlyTemplate.ts +39 -0
  716. package/src/utils/rack.ts +16 -0
  717. package/src/utils/sampleTypeMarker.ts +44 -0
  718. package/dist/ExperimentPopover-CJdNlCZb.js +0 -451
  719. package/dist/ExperimentPopover-CJdNlCZb.js.map +0 -1
  720. package/dist/ExperimentSelectorModal-DHE9k8TP.js +0 -507
  721. package/dist/ExperimentSelectorModal-DHE9k8TP.js.map +0 -1
  722. package/dist/SettingsModal-DELMkUFR.js +0 -492
  723. package/dist/SettingsModal-DELMkUFR.js.map +0 -1
  724. package/dist/Skeleton-jhF9wUkU.js +0 -485
  725. package/dist/Skeleton-jhF9wUkU.js.map +0 -1
  726. package/dist/__tests__/composables/usePluginConfig.test.d.ts +0 -15
  727. package/dist/chunk-BoAXSpZd.js +0 -33
  728. package/dist/components/AppPluginSwitcher.vue.d.ts +0 -40
  729. package/dist/components/ColorSlider.vue.d.ts +0 -34
  730. package/dist/components/DropdownButton.vue.d.ts +0 -49
  731. package/dist/components/FileBrowserModal.vue.d.ts +0 -99
  732. package/dist/components/InstrumentAlertLog.vue.d.ts +0 -22
  733. package/dist/components/InstrumentStatusCard.vue.d.ts +0 -13
  734. package/dist/components/LcmsSequenceTable.vue.d.ts +0 -54
  735. package/dist/components/PlateMapEditor.vue.d.ts +0 -50
  736. package/dist/components/RackEditor.vue.d.ts +0 -78
  737. package/dist/components/fileBrowserPresentation.d.ts +0 -10
  738. package/dist/components/internal/FileBrowserDialogInternal.vue.d.ts +0 -34
  739. package/dist/components/internal/FileBrowserListingInternal.vue.d.ts +0 -25
  740. package/dist/components/internal/FileBrowserToolbarInternal.vue.d.ts +0 -26
  741. package/dist/components/internal/PlateMapEditorToolbarInternal.vue.d.ts +0 -28
  742. package/dist/components-Bbg_gtzF.js.map +0 -1
  743. package/dist/composables/useAsync.d.ts +0 -132
  744. package/dist/composables/useAuth.d.ts +0 -47
  745. package/dist/composables/useCommandHistory.d.ts +0 -33
  746. package/dist/composables/useOptimisticMutation.d.ts +0 -32
  747. package/dist/composables/usePasskey.d.ts +0 -10
  748. package/dist/composables/usePluginConfig.d.ts +0 -27
  749. package/dist/composables/useResourceCrud.d.ts +0 -44
  750. package/dist/composables/useWellPainting.d.ts +0 -39
  751. package/dist/composables/useWellPlateAdapter.d.ts +0 -40
  752. package/dist/composables/useWellPlateEditor.d.ts +0 -33
  753. package/dist/composables/useWellPlateValidation.d.ts +0 -31
  754. package/dist/composables-BCbYb2lA.js +0 -2356
  755. package/dist/composables-BCbYb2lA.js.map +0 -1
  756. package/dist/errors-BLuqMee5.js.map +0 -1
  757. package/dist/experiment-CVDRAnqp.js +0 -90
  758. package/dist/experiment-CVDRAnqp.js.map +0 -1
  759. package/dist/experiment-utils-CV2Wza3z.js.map +0 -1
  760. package/dist/plotly.min-c2Sez60c.js +0 -180634
  761. package/dist/plotly.min-c2Sez60c.js.map +0 -1
  762. package/dist/templates-NuaNHohp.js +0 -5260
  763. package/dist/templates-NuaNHohp.js.map +0 -1
  764. package/dist/useControlSchema-vLiRPUmj.js +0 -7301
  765. package/dist/useControlSchema-vLiRPUmj.js.map +0 -1
  766. package/dist/useDropdownState-C7hRiVQf.js +0 -63
  767. package/dist/useDropdownState-C7hRiVQf.js.map +0 -1
  768. package/dist/useExperimentSelector-G_CAOFTX.js +0 -328
  769. package/dist/useExperimentSelector-G_CAOFTX.js.map +0 -1
  770. package/dist/useFormBuilder-D37ajgS8.js +0 -729
  771. package/dist/useFormBuilder-D37ajgS8.js.map +0 -1
  772. package/dist/validation-ChMyixAf.js.map +0 -1
  773. package/src/__tests__/components/AppPluginSwitcher.test.ts +0 -44
  774. package/src/__tests__/components/DropdownButton.test.ts +0 -628
  775. package/src/__tests__/components/FileBrowserModal.test.ts +0 -460
  776. package/src/__tests__/components/InstrumentAlertLog.test.ts +0 -59
  777. package/src/__tests__/components/LcmsSequenceTable.test.ts +0 -79
  778. package/src/__tests__/components/PlateMapEditorToolbarInternal.test.ts +0 -54
  779. package/src/__tests__/components/RackEditor.test.ts +0 -169
  780. package/src/__tests__/composables/useAuth.test.ts +0 -233
  781. package/src/__tests__/composables/useCommandHistory.test.ts +0 -43
  782. package/src/__tests__/composables/useOptimisticMutation.test.ts +0 -40
  783. package/src/__tests__/composables/usePluginConfig.test.ts +0 -497
  784. package/src/__tests__/composables/useResourceCrud.test.ts +0 -56
  785. package/src/__tests__/composables/useWellPainting.test.ts +0 -52
  786. package/src/__tests__/composables/useWellPlateAdapter.test.ts +0 -50
  787. package/src/__tests__/composables/useWellPlateValidation.test.ts +0 -42
  788. package/src/components/AppPluginSwitcher.story.vue +0 -87
  789. package/src/components/AppPluginSwitcher.vue +0 -134
  790. package/src/components/ColorSlider.story.vue +0 -120
  791. package/src/components/ColorSlider.vue +0 -160
  792. package/src/components/DropdownButton.story.vue +0 -102
  793. package/src/components/DropdownButton.vue +0 -181
  794. package/src/components/FileBrowserModal.story.vue +0 -203
  795. package/src/components/FileBrowserModal.vue +0 -384
  796. package/src/components/InstrumentAlertLog.vue +0 -187
  797. package/src/components/InstrumentStatusCard.vue +0 -184
  798. package/src/components/LcmsSequenceTable.vue +0 -222
  799. package/src/components/PlateMapEditor.story.vue +0 -92
  800. package/src/components/PlateMapEditor.vue +0 -423
  801. package/src/components/RackEditor.story.vue +0 -100
  802. package/src/components/RackEditor.vue +0 -429
  803. package/src/components/fileBrowserPresentation.ts +0 -39
  804. package/src/components/internal/FileBrowserDialogInternal.vue +0 -75
  805. package/src/components/internal/FileBrowserListingInternal.vue +0 -197
  806. package/src/components/internal/FileBrowserToolbarInternal.vue +0 -136
  807. package/src/components/internal/FilePickerTreeInternal.vue +0 -238
  808. package/src/components/internal/PlateMapEditorToolbarInternal.vue +0 -128
  809. package/src/composables/useAsync.ts +0 -327
  810. package/src/composables/useAuth.ts +0 -458
  811. package/src/composables/useCommandHistory.ts +0 -117
  812. package/src/composables/useOptimisticMutation.ts +0 -97
  813. package/src/composables/usePasskey.ts +0 -216
  814. package/src/composables/usePluginConfig.ts +0 -252
  815. package/src/composables/useResourceCrud.ts +0 -235
  816. package/src/composables/useWellPainting.ts +0 -167
  817. package/src/composables/useWellPlateAdapter.ts +0 -151
  818. package/src/composables/useWellPlateEditor.ts +0 -415
  819. package/src/composables/useWellPlateValidation.ts +0 -89
  820. package/src/plotly-dist.d.ts +0 -3
  821. package/src/styles/components/app-plugin-switcher.css +0 -196
  822. package/src/styles/components/color-slider.css +0 -110
  823. package/src/styles/components/dropdown-button.css +0 -280
  824. package/src/styles/components/file-browser-modal.css +0 -489
  825. package/src/styles/components/lcms-sequence-table.css +0 -204
  826. package/src/styles/components/plate-map-editor.css +0 -464
  827. package/src/styles/components/rack-editor.css +0 -287
  828. /package/dist/__tests__/components/{AppPluginSwitcher.test.d.ts → AlertBox.test.d.ts} +0 -0
  829. /package/dist/__tests__/components/{DropdownButton.test.d.ts → AuditTrail.test.d.ts} +0 -0
  830. /package/dist/__tests__/components/{FileBrowserModal.test.d.ts → BaseCheckbox.test.d.ts} +0 -0
  831. /package/dist/__tests__/components/{InstrumentAlertLog.test.d.ts → BaseSlider.test.d.ts} +0 -0
  832. /package/dist/__tests__/components/{LcmsSequenceTable.test.d.ts → DoseCalculator.test.d.ts} +0 -0
  833. /package/dist/__tests__/components/{PlateMapEditorToolbarInternal.test.d.ts → FileUploader.test.d.ts} +0 -0
  834. /package/dist/__tests__/components/{RackEditor.test.d.ts → FitPanel.test.d.ts} +0 -0
  835. /package/dist/__tests__/{composables/useAuth.test.d.ts → components/FormulaInput.test.d.ts} +0 -0
  836. /package/dist/__tests__/{composables/useCommandHistory.test.d.ts → components/InstrumentStateBadge.test.d.ts} +0 -0
  837. /package/dist/__tests__/{composables/useOptimisticMutation.test.d.ts → components/MoleculeInput.test.d.ts} +0 -0
  838. /package/dist/__tests__/{composables/useResourceCrud.test.d.ts → components/PlateEditor.test.d.ts} +0 -0
  839. /package/dist/__tests__/{composables/useWellPainting.test.d.ts → components/PlateEditorBindingInternal.test.d.ts} +0 -0
  840. /package/dist/__tests__/{composables/useWellPlateAdapter.test.d.ts → components/ResourcePickerListInternal.test.d.ts} +0 -0
  841. /package/dist/__tests__/{composables/useWellPlateValidation.test.d.ts → components/SampleLegend.test.d.ts} +0 -0
@@ -15,8 +15,15 @@
15
15
  * 3. Appearance only — `showAppearance` (default true) renders the built-in
16
16
  * theme / palette / table-density tab. Works alongside both modes above.
17
17
  *
18
- * Layout: `horizontal` (underline tabs, default) or `vertical` (sidebar rail
19
- * with optional icons + descriptions, recommended for 5+ groups).
18
+ * Layout: omitted (default) renders a sidebar rail split into "Plugin" and
19
+ * "Personal" (Appearance) sections when there are more than three groups, and
20
+ * stacks every group on one page otherwise. `vertical` always uses the rail;
21
+ * `horizontal` keeps the underline tab strip.
22
+ *
23
+ * Schema-driven settings also get a search across groups (label + hint), a
24
+ * modified-from-default marker with a per-row reset for every field with a
25
+ * non-null `defaultValue` (every `controls`/`model` field gets one), and a "Restore group defaults" action. Changes
26
+ * apply immediately; the default footer says so and closes with "Done".
20
27
  *
21
28
  * @example Recommended
22
29
  * ```vue
@@ -25,7 +32,11 @@
25
32
  */
26
33
  import { ref, computed, watch } from 'vue'
27
34
  import BaseModal from './BaseModal.vue'
35
+ import BaseButton from './BaseButton.vue'
36
+ import BaseInput from './BaseInput.vue'
37
+ import SegmentedControl from './SegmentedControl.vue'
28
38
  import FormFieldRendererInternal from './internal/FormFieldRendererInternal.vue'
39
+ import SettingsPaneHeadInternal from './internal/SettingsPaneHeadInternal.vue'
29
40
  import { useFormBuilder } from '../composables/useFormBuilder'
30
41
  import {
31
42
  controlsToSettingsSchema,
@@ -45,6 +56,7 @@ import {
45
56
  pickExistingRecordKeys,
46
57
  pickRecordKeys,
47
58
  recordValuesEqualForKeys,
59
+ valuesEqual,
48
60
  } from '../utils/formModelSync'
49
61
  import type {
50
62
  ThemeMode,
@@ -52,15 +64,18 @@ import type {
52
64
  TableDensity,
53
65
  ModalLayout,
54
66
  ModalTab,
67
+ SettingsGroup,
55
68
  SettingsTab,
56
69
  SettingsTabInput,
57
70
  SettingsModalLayout,
58
71
  SettingsModalSchema,
59
72
  SettingsUserType,
60
73
  FormEnhancements,
74
+ FormFieldSchema,
61
75
  } from '../types'
62
76
  import type { AccessControlled, PermissionUser } from '../permissions'
63
77
  import {
78
+ APPEARANCE_TAB,
64
79
  APPEARANCE_TAB_ID,
65
80
  buildFlatSettingsSchema,
66
81
  buildSettingsTabs,
@@ -75,6 +90,8 @@ interface Props {
75
90
  /** Manual tab descriptors. Ignored when `schema` is set (groups become tabs). */
76
91
  tabs?: SettingsTabInput[]
77
92
  showAppearance?: boolean
93
+ /** List Appearance before the other tabs and open on it. */
94
+ appearanceFirst?: boolean
78
95
  size?: 'md' | 'lg' | 'xl'
79
96
  layout?: SettingsModalLayout
80
97
  /** Declarative schema — fields auto-render via SDK form components. */
@@ -98,7 +115,7 @@ const props = withDefaults(defineProps<Props>(), {
98
115
  tabs: () => [],
99
116
  showAppearance: true,
100
117
  size: 'lg',
101
- layout: 'horizontal',
118
+ layout: undefined,
102
119
  model: undefined,
103
120
  })
104
121
 
@@ -112,8 +129,6 @@ const settings = useSettingsStore()
112
129
  const auth = useAuthStore()
113
130
  const { user: platformUser } = usePlatformContext()
114
131
 
115
- const isVertical = computed(() => props.layout === 'vertical')
116
-
117
132
  const resolvedModel = computed<ControlModelBinding | undefined>(() => {
118
133
  return resolveControlModel(props.model)
119
134
  })
@@ -190,9 +205,14 @@ watch(
190
205
  { deep: true },
191
206
  )
192
207
 
208
+ // Changes apply immediately; the footer confirms it once the user changed something.
209
+ const applied = ref(false)
210
+
193
211
  watch(
194
212
  () => ({ ...builder.form.data }),
195
213
  (data) => {
214
+ // A reset to the parent's values (async load, schema swap) is not a user change.
215
+ if (!recordValuesEqualForKeys(data, resolvedValues.value, builderFieldNames())) applied.value = true
196
216
  if (settingsSchema.value) {
197
217
  emit('update:values', {
198
218
  ...resolvedValues.value,
@@ -220,28 +240,58 @@ const allTabs = computed<SettingsTab[]>(() => {
220
240
  const base: SettingsTab[] = settingsSchema.value
221
241
  ? visibleSchemaGroups.value.map(settingsGroupToTab)
222
242
  : manualTabs.value
223
- return buildSettingsTabs(base, props.showAppearance)
243
+ return buildSettingsTabs(base, props.showAppearance, props.appearanceFirst)
224
244
  })
225
245
 
226
246
  const activeTab = ref(allTabs.value[0]?.id || APPEARANCE_TAB_ID)
227
247
 
248
+ /** Above this many plugin groups the default layout switches from one stacked page to the rail. */
249
+ const STACKED_GROUP_LIMIT = 3
250
+
228
251
  // BaseModal owns the tab chrome: 'vertical' keeps its public name and maps to
229
252
  // the shell rail; horizontal maps to the shell strip (plain when single-tab).
230
253
  const baseLayout = computed<ModalLayout>(() => {
231
- if (isVertical.value) return 'rail'
232
- return allTabs.value.length > 1 ? 'tabs' : 'plain'
254
+ if (props.layout === 'vertical') return 'rail'
255
+ if (props.layout === 'horizontal') return allTabs.value.length > 1 ? 'tabs' : 'plain'
256
+ const pluginTabCount = settingsSchema.value ? visibleSchemaGroups.value.length : manualTabs.value.length
257
+ return pluginTabCount > STACKED_GROUP_LIMIT ? 'rail' : 'plain'
233
258
  })
259
+ const isRail = computed(() => baseLayout.value === 'rail')
260
+ const isStacked = computed(() => baseLayout.value === 'plain')
261
+
262
+ const query = ref('')
263
+ const searchTerm = computed(() => query.value.trim().toLowerCase())
264
+ const isSearching = computed(() => isSchemaDriven.value && searchTerm.value !== '')
234
265
 
235
266
  const modalTabs = computed<ModalTab[]>(() =>
236
- allTabs.value.map((tab) => ({
237
- id: tab.id,
238
- label: tab.label,
239
- icon: tab.icon,
240
- description: tab.description,
241
- meta: tab.meta,
242
- })),
267
+ allTabs.value.map((tab) => {
268
+ const group = visibleSchemaGroups.value.find((g) => g.id === tab.id)
269
+ const modified = group ? modifiedCount(group) : 0
270
+ return {
271
+ id: tab.id,
272
+ label: tab.label,
273
+ icon: tab.icon,
274
+ description: tab.description,
275
+ meta: group ? (modified ? String(modified) : undefined) : tab.meta,
276
+ // Sections only split plugin groups from Appearance; without it there is nothing to split.
277
+ section: props.showAppearance ? (tab.id === APPEARANCE_TAB_ID ? 'Personal' : tab.section ?? 'Plugin') : undefined,
278
+ }
279
+ }),
243
280
  )
244
281
 
282
+ function selectTab(id: string) {
283
+ activeTab.value = id
284
+ query.value = ''
285
+ }
286
+
287
+ function handleSearchKeydown(event: KeyboardEvent) {
288
+ // First Escape clears the search; the next one closes the modal.
289
+ if (event.key === 'Escape' && query.value) {
290
+ event.stopPropagation()
291
+ query.value = ''
292
+ }
293
+ }
294
+
245
295
  // If the active tab vanishes (group hidden by condition), drop back to the first available.
246
296
  watch(allTabs, (tabs) => {
247
297
  if (!tabs.some((t) => t.id === activeTab.value)) {
@@ -253,15 +303,91 @@ const activeGroup = computed(() =>
253
303
  visibleSchemaGroups.value.find((g) => g.id === activeTab.value),
254
304
  )
255
305
 
256
- const activeGroupVisibleFields = computed(() => {
257
- if (!activeGroup.value) return []
258
- return activeGroup.value.fields.filter((f) => builder.isFieldVisible(f.name))
306
+ function visibleFields(group: SettingsGroup): FormFieldSchema[] {
307
+ return group.fields.filter((f) => builder.isFieldVisible(f.name))
308
+ }
309
+
310
+ /**
311
+ * Modified = differs from the field's own `defaultValue`. A field without one, or with a `null`
312
+ * default (a secret, or an optional setting), never is: restoring `null` would clear a stored value.
313
+ */
314
+ function isModified(field: FormFieldSchema): boolean {
315
+ return field.defaultValue != null
316
+ && !valuesEqual((builder.form.data as Record<string, unknown>)[field.name], field.defaultValue)
317
+ }
318
+
319
+ function modifiedCount(group: SettingsGroup): number {
320
+ return visibleFields(group).filter(isModified).length
321
+ }
322
+
323
+ function resetField(field: FormFieldSchema) {
324
+ builder.form.setFieldValue(field.name, field.defaultValue)
325
+ }
326
+
327
+ function restoreGroup(group: SettingsGroup | undefined) {
328
+ if (group) visibleFields(group).filter(isModified).forEach(resetField)
329
+ }
330
+
331
+ function isBooleanField(field: FormFieldSchema): boolean {
332
+ return field.type === 'checkbox' || field.type === 'toggle'
333
+ }
334
+
335
+ /** Booleans are always toggles inside settings rows; their hint is printed under the row, not in a tooltip. */
336
+ function settingsField(field: FormFieldSchema): FormFieldSchema {
337
+ return isBooleanField(field) ? { ...field, type: 'toggle', hint: undefined } : field
338
+ }
339
+
340
+ interface SettingsRow {
341
+ field: FormFieldSchema
342
+ group: SettingsGroup
343
+ }
344
+
345
+ const searchResults = computed<SettingsRow[]>(() => {
346
+ if (!isSearching.value) return []
347
+ return visibleSchemaGroups.value.flatMap((group) =>
348
+ visibleFields(group)
349
+ .filter((field) => [field.label, field.hint, group.label].join(' ').toLowerCase().includes(searchTerm.value))
350
+ .map((field) => ({ field, group })),
351
+ )
259
352
  })
260
353
 
261
- const themeOptions: { value: ThemeMode; label: string }[] = [
262
- { value: 'light', label: 'Light' },
263
- { value: 'dark', label: 'Dark' },
264
- { value: 'system', label: 'System' },
354
+ const resultCount = computed(() =>
355
+ `${searchResults.value.length} result${searchResults.value.length === 1 ? '' : 's'}`,
356
+ )
357
+
358
+ /** What the pane renders: one list of search hits, every group (stacked) or the active group. */
359
+ const paneSections = computed<{ key: string; group?: SettingsGroup; rows: SettingsRow[] }[]>(() => {
360
+ if (isSearching.value) {
361
+ return searchResults.value.length ? [{ key: 'search', rows: searchResults.value }] : []
362
+ }
363
+ const groups = isStacked.value
364
+ ? visibleSchemaGroups.value
365
+ : activeGroup.value ? [activeGroup.value] : []
366
+ return groups.map((group) => ({
367
+ key: group.id,
368
+ group,
369
+ rows: visibleFields(group).map((field) => ({ field, group })),
370
+ }))
371
+ })
372
+
373
+ const themeOptions: { value: ThemeMode; label: string; halves: ('light' | 'dark')[] }[] = [
374
+ { value: 'light', label: 'Light', halves: ['light'] },
375
+ { value: 'dark', label: 'Dark', halves: ['dark'] },
376
+ { value: 'system', label: 'System', halves: ['light', 'dark'] },
377
+ ]
378
+
379
+ /** Five stops along the palette's primary → accent hue arc (shortest way round), as in the board. */
380
+ function paletteSwatches(key: ColorPalette): string[] {
381
+ const [from, to] = colorPalettes[key].hues
382
+ const span = ((to - from + 540) % 360) - 180
383
+ const tone = key === 'pastel' ? '60% 72%' : '65% 48%'
384
+ return Array.from({ length: 5 }, (_, i) => `hsl(${Math.round(from + (span * i) / 4)} ${tone})`)
385
+ }
386
+
387
+ const densityPreviewRows = [
388
+ ['S-0012', '2.41', '12.5'],
389
+ ['S-0013', '7.90', '3.25'],
390
+ ['S-0014', '10.60', '0.80'],
265
391
  ]
266
392
 
267
393
  const densityOptions: { value: TableDensity; label: string }[] = [
@@ -270,6 +396,11 @@ const densityOptions: { value: TableDensity; label: string }[] = [
270
396
  { value: 'comfortable', label: 'Comfortable' },
271
397
  ]
272
398
 
399
+ watch(
400
+ () => [settings.theme, settings.colorPalette, settings.tableDensity],
401
+ () => { applied.value = true },
402
+ )
403
+
273
404
  function handleClose() {
274
405
  emit('update:modelValue', false)
275
406
  emit('close')
@@ -282,7 +413,7 @@ function builderFieldNames(): string[] {
282
413
  function canShowForCurrentUser(item: AccessControlled): boolean {
283
414
  return canAccessByPolicy(
284
415
  currentAccessUser.value,
285
- item,
416
+ item.access,
286
417
  isAccessUserAuthenticated.value,
287
418
  )
288
419
  }
@@ -295,101 +426,229 @@ function canShowForCurrentUser(item: AccessControlled): boolean {
295
426
  :size="size"
296
427
  :layout="baseLayout"
297
428
  :tabs="modalTabs"
298
- :active-tab="activeTab"
299
- @update:active-tab="activeTab = $event"
429
+ :active-tab="isSearching ? '' : activeTab"
430
+ @update:active-tab="selectTab"
300
431
  @update:model-value="emit('update:modelValue', $event)"
301
432
  @close="handleClose"
302
433
  >
434
+ <template #header>
435
+ <div class="mint-settings-modal__header">
436
+ <h3 class="mint-modal__title">{{ title }}</h3>
437
+ <div v-if="isSchemaDriven" class="mint-settings-modal__search">
438
+ <svg class="mint-settings-modal__search-icon" viewBox="0 0 16 16" fill="none" stroke="currentColor" stroke-width="1.6" stroke-linecap="round" aria-hidden="true">
439
+ <circle cx="7" cy="7" r="4.5" /><path d="M10.5 10.5L14 14" />
440
+ </svg>
441
+ <BaseInput
442
+ :model-value="query"
443
+ type="search"
444
+ size="sm"
445
+ placeholder="Search settings"
446
+ aria-label="Search settings"
447
+ @update:model-value="query = String($event ?? '')"
448
+ @keydown="handleSearchKeydown"
449
+ />
450
+ </div>
451
+ </div>
452
+ </template>
453
+
454
+ <template v-if="isRail && isSchemaDriven" #pane-header="{ tab }">
455
+ <SettingsPaneHeadInternal v-if="isSearching" title="Search results" :count="resultCount" />
456
+ <SettingsPaneHeadInternal
457
+ v-else
458
+ :title="tab?.label ?? ''"
459
+ :description="tab?.description"
460
+ :modified-count="activeGroup ? modifiedCount(activeGroup) : undefined"
461
+ @restore="restoreGroup(activeGroup)"
462
+ />
463
+ </template>
464
+
303
465
  <!-- Body: the active pane only — tab strip / rail / footer are BaseModal's shell. -->
304
- <div class="mint-settings-modal">
305
- <div
306
- v-if="isSchemaDriven && activeGroup"
307
- class="mint-settings-modal__group-grid"
308
- :style="{ '--mint-settings-cols': activeGroup.columns ?? 1 }"
309
- >
310
- <template v-for="field in activeGroupVisibleFields" :key="field.name">
311
- <div :style="field.colSpan ? { gridColumn: `span ${field.colSpan}` } : undefined">
312
- <slot
313
- :name="`field:${field.name}`"
314
- :field="field"
315
- :form="builder.form"
316
- :field-props="builder.form.getFieldProps(field.name)"
466
+ <div :class="['mint-settings-modal', { 'mint-settings-modal--schema': isSchemaDriven }]">
467
+ <template v-if="isSchemaDriven">
468
+ <SettingsPaneHeadInternal v-if="isSearching && !isRail" title="Search results" :count="resultCount" />
469
+ <section v-for="section in paneSections" :key="section.key" class="mint-settings-modal__group">
470
+ <SettingsPaneHeadInternal
471
+ v-if="section.group && !isRail"
472
+ :title="section.group.label"
473
+ :description="section.group.description"
474
+ :modified-count="modifiedCount(section.group)"
475
+ @restore="restoreGroup(section.group)"
476
+ />
477
+ <div
478
+ class="mint-settings-modal__group-grid"
479
+ :style="{ '--mint-settings-cols': section.group?.columns ?? 1 }"
480
+ >
481
+ <div
482
+ v-for="row in section.rows"
483
+ :key="row.field.name"
484
+ :class="['mint-settings-modal__row', { 'mint-settings-modal__row--modified': isModified(row.field) }]"
485
+ :style="row.field.colSpan ? { gridColumn: `span ${row.field.colSpan}` } : undefined"
317
486
  >
318
- <FormFieldRendererInternal
319
- :field="field"
320
- :resolved-props="builder.getResolvedFieldProps(field)"
321
- :form="builder.form"
322
- />
323
- </slot>
487
+ <span v-if="!section.group" class="mint-settings-modal__row-group">{{ row.group.label }}</span>
488
+ <div class="mint-settings-modal__row-field">
489
+ <slot
490
+ :name="`field:${row.field.name}`"
491
+ :field="row.field"
492
+ :form="builder.form"
493
+ :field-props="builder.form.getFieldProps(row.field.name)"
494
+ >
495
+ <FormFieldRendererInternal
496
+ :field="settingsField(row.field)"
497
+ :resolved-props="builder.getResolvedFieldProps(settingsField(row.field))"
498
+ :form="builder.form"
499
+ />
500
+ </slot>
501
+ <p v-if="isBooleanField(row.field) && row.field.hint" class="mint-settings-modal__row-hint">
502
+ {{ row.field.hint }}
503
+ </p>
504
+ <button
505
+ v-if="isModified(row.field)"
506
+ type="button"
507
+ class="mint-settings-modal__reset"
508
+ title="Restore default"
509
+ :aria-label="`Restore default for ${row.field.label}`"
510
+ @click="resetField(row.field)"
511
+ >
512
+ <svg viewBox="0 0 16 16" fill="none" stroke="currentColor" stroke-width="1.6" stroke-linecap="round" stroke-linejoin="round" aria-hidden="true">
513
+ <path d="M3 8a5 5 0 1 0 1.5-3.5M3 3v2.5h2.5" />
514
+ </svg>
515
+ </button>
516
+ </div>
517
+ </div>
324
518
  </div>
325
- </template>
326
- </div>
519
+ </section>
520
+ <p v-if="isSearching && searchResults.length === 0" class="mint-settings-modal__empty">
521
+ No settings match "{{ query.trim() }}"
522
+ </p>
523
+ </template>
327
524
 
328
- <template v-else-if="!isSchemaDriven">
329
- <template v-for="tab in manualTabs" :key="tab.id">
330
- <div v-show="activeTab === tab.id">
331
- <slot :name="`tab-${tab.id}`" />
332
- </div>
333
- </template>
525
+ <template v-else>
526
+ <section
527
+ v-for="tab in manualTabs"
528
+ v-show="isStacked || activeTab === tab.id"
529
+ :key="tab.id"
530
+ class="mint-settings-modal__group"
531
+ >
532
+ <SettingsPaneHeadInternal v-if="isStacked" :title="tab.label" :description="tab.description" />
533
+ <slot :name="`tab-${tab.id}`" />
534
+ </section>
334
535
  </template>
335
536
 
336
- <div v-if="showAppearance" v-show="activeTab === APPEARANCE_TAB_ID">
337
- <div class="mint-settings-modal__section">
338
- <div class="mint-settings-modal__section-label">Theme</div>
339
- <div class="mint-settings-modal__option-group">
537
+ <section
538
+ v-if="showAppearance"
539
+ v-show="!isSearching && (isStacked || activeTab === APPEARANCE_TAB_ID)"
540
+ class="mint-settings-modal__group mint-settings-modal__appearance"
541
+ >
542
+ <SettingsPaneHeadInternal
543
+ v-if="isStacked"
544
+ :title="APPEARANCE_TAB.label"
545
+ :description="APPEARANCE_TAB.description"
546
+ />
547
+
548
+ <div class="mint-settings-modal__setting">
549
+ <div class="mint-settings-modal__setting-text">
550
+ <span class="mint-settings-modal__setting-label">Theme</span>
551
+ <span class="mint-settings-modal__setting-hint">Applies to this browser only</span>
552
+ </div>
553
+ <div class="mint-settings-modal__themes">
340
554
  <button
341
555
  v-for="opt in themeOptions"
342
556
  :key="opt.value"
343
557
  type="button"
344
- :class="['mint-settings-modal__option-btn', { 'mint-settings-modal__option-btn--active': settings.theme === opt.value }]"
558
+ :aria-pressed="settings.theme === opt.value"
559
+ :class="['mint-settings-modal__theme', { 'mint-settings-modal__theme--active': settings.theme === opt.value }]"
345
560
  @click="settings.theme = opt.value"
346
561
  >
347
- {{ opt.label }}
562
+ <span class="mint-settings-modal__theme-preview" aria-hidden="true">
563
+ <span
564
+ v-for="half in opt.halves"
565
+ :key="half"
566
+ :class="['mint-settings-modal__theme-half', `mint-settings-modal__theme-half--${half}`]"
567
+ >
568
+ <span class="mint-settings-modal__theme-line" />
569
+ <span class="mint-settings-modal__theme-card" />
570
+ </span>
571
+ </span>
572
+ <span class="mint-settings-modal__theme-label">
573
+ <span class="mint-settings-modal__theme-radio" aria-hidden="true" />
574
+ {{ opt.label }}
575
+ </span>
348
576
  </button>
349
577
  </div>
350
578
  </div>
351
579
 
352
- <div class="mint-settings-modal__section">
353
- <div class="mint-settings-modal__section-label">Color Palette</div>
354
- <div class="mint-settings-modal__option-group">
580
+ <div class="mint-settings-modal__setting">
581
+ <div class="mint-settings-modal__setting-text">
582
+ <span class="mint-settings-modal__setting-label">Color palette</span>
583
+ <span class="mint-settings-modal__setting-hint">Primary and accent hues across the interface</span>
584
+ </div>
585
+ <div class="mint-settings-modal__palettes">
355
586
  <button
356
587
  v-for="(palette, key) in colorPalettes"
357
588
  :key="key"
358
589
  type="button"
359
- :class="['mint-settings-modal__option-btn', { 'mint-settings-modal__option-btn--active': settings.colorPalette === key }]"
590
+ :aria-pressed="settings.colorPalette === key"
591
+ :class="['mint-settings-modal__palette', { 'mint-settings-modal__palette--active': settings.colorPalette === key }]"
360
592
  @click="settings.colorPalette = key as ColorPalette"
361
593
  >
362
- {{ palette.name }}
594
+ <span class="mint-settings-modal__swatches" aria-hidden="true">
595
+ <span
596
+ v-for="color in paletteSwatches(key as ColorPalette)"
597
+ :key="color"
598
+ class="mint-settings-modal__swatch"
599
+ :style="{ backgroundColor: color }"
600
+ />
601
+ </span>
602
+ <span class="mint-settings-modal__palette-name">{{ palette.name }}</span>
603
+ <svg class="mint-settings-modal__palette-check" viewBox="0 0 16 16" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" aria-hidden="true">
604
+ <path d="M3.5 8.5l3 3 6-7" />
605
+ </svg>
363
606
  </button>
364
607
  </div>
365
608
  </div>
366
609
 
367
- <div class="mint-settings-modal__section">
368
- <div class="mint-settings-modal__section-label">Table Density</div>
369
- <div class="mint-settings-modal__option-group">
370
- <button
371
- v-for="opt in densityOptions"
372
- :key="opt.value"
373
- type="button"
374
- :class="['mint-settings-modal__option-btn', { 'mint-settings-modal__option-btn--active': settings.tableDensity === opt.value }]"
375
- @click="settings.tableDensity = opt.value"
376
- >
377
- {{ opt.label }}
378
- </button>
610
+ <div class="mint-settings-modal__setting mint-settings-modal__setting--inline">
611
+ <div class="mint-settings-modal__setting-text">
612
+ <span class="mint-settings-modal__setting-label">Table density</span>
613
+ <span class="mint-settings-modal__setting-hint">Adjusts row height in data tables</span>
614
+ </div>
615
+ <SegmentedControl
616
+ :model-value="settings.tableDensity"
617
+ :options="densityOptions"
618
+ size="sm"
619
+ @update:model-value="settings.tableDensity = $event as TableDensity"
620
+ />
621
+ <div
622
+ :class="['mint-settings-modal__density-preview', `mint-settings-modal__density-preview--${settings.tableDensity}`]"
623
+ aria-hidden="true"
624
+ >
625
+ <div class="mint-settings-modal__density-row mint-settings-modal__density-row--head">
626
+ <span>Sample</span><span>RT</span><span>IC50</span>
627
+ </div>
628
+ <div v-for="cells in densityPreviewRows" :key="cells[0]" class="mint-settings-modal__density-row">
629
+ <span>{{ cells[0] }}</span><span>{{ cells[1] }}</span><span>{{ cells[2] }}</span>
630
+ </div>
379
631
  </div>
380
- <p class="mint-settings-modal__note">Adjusts row height in data tables.</p>
381
632
  </div>
382
633
 
383
634
  <slot name="appearance" />
384
- </div>
635
+ </section>
385
636
  </div>
386
637
 
387
- <template v-if="$slots.footer" #footer>
638
+ <template #footer>
388
639
  <slot
389
640
  name="footer"
390
641
  :values="builder.form.data"
391
642
  :close="handleClose"
392
- />
643
+ >
644
+ <span class="mint-settings-modal__status" role="status">
645
+ <svg v-if="applied" class="mint-settings-modal__status-icon" viewBox="0 0 16 16" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" aria-hidden="true">
646
+ <path d="M3.5 8.5l3 3 6-7" />
647
+ </svg>
648
+ {{ applied ? 'Applied · changes take effect immediately' : 'Changes take effect immediately' }}
649
+ </span>
650
+ <BaseButton class="mint-settings-modal__done" variant="primary" @click="handleClose">Done</BaseButton>
651
+ </slot>
393
652
  </template>
394
653
  </BaseModal>
395
654
  </template>
@@ -28,41 +28,12 @@ const style = computed(() => {
28
28
  return s
29
29
  })
30
30
 
31
- const classes = computed(() => {
32
- const base = ['bg-bg-hover']
33
-
34
- switch (props.variant) {
35
- case 'circular':
36
- base.push('rounded-full')
37
- if (!props.width && !props.height) {
38
- base.push('w-10 h-10')
39
- }
40
- break
41
- case 'rectangular':
42
- base.push('rounded-none')
43
- if (!props.height) base.push('h-24')
44
- break
45
- case 'rounded':
46
- base.push('rounded-mint')
47
- if (!props.height) base.push('h-24')
48
- break
49
- default:
50
- base.push('rounded')
51
- if (!props.height) base.push('h-4')
52
- if (!props.width) base.push('w-full')
53
- }
54
-
55
- switch (props.animation) {
56
- case 'pulse':
57
- base.push('animate-pulse')
58
- break
59
- case 'wave':
60
- base.push('skeleton-wave')
61
- break
62
- }
63
-
64
- return base
65
- })
31
+ const classes = computed(() => [
32
+ 'mint-skeleton',
33
+ `mint-skeleton--${props.variant}`,
34
+ // pulse and wave both breathe (3e); the shimmer is gone.
35
+ props.animation === 'none' ? '' : 'skeleton-wave',
36
+ ])
66
37
  </script>
67
38
 
68
39
  <template>
@@ -15,7 +15,7 @@ export type SmartGroupMode = 'auto' | 'manual'
15
15
 
16
16
  /** A colour swatch in the manual assignment bar. */
17
17
  export interface ManualPaletteEntry {
18
- /** CSS colour value (e.g. a `var(--grp-*)` reference). */
18
+ /** CSS colour value (e.g. `var(--mint-sample-1)`). */
19
19
  c: string
20
20
  /** Human-readable swatch key for the `aria-label`. */
21
21
  k: string
@@ -50,7 +50,7 @@ export interface SmartGroupFieldRecipeProps {
50
50
  initialRoute?: QcRoute
51
51
  /** Group colours, cycled in group order. */
52
52
  palette?: string[]
53
- /** Colour used for the QC pool. */
53
+ /** Colour of the QC pool's count bar. The QC dot is always the neutral QC marker (3a). */
54
54
  qcColor?: string
55
55
 
56
56
  // ── Controlled mode (driven by AutoGroupModal over the useAutoGroup engine).
@@ -28,6 +28,9 @@ export interface FieldRecipeGroup {
28
28
  color: string
29
29
  }
30
30
 
31
+ /** Name of the QC pool group appended by `appendQcGroup`. */
32
+ export const QC_POOL_NAME = 'QC_Pool'
33
+
31
34
  /** How QC samples are routed relative to the biological groups. */
32
35
  export type QcRoute = 'Overlay only' | 'Exclude' | 'Mix into groups'
33
36
 
@@ -86,7 +89,7 @@ export function appendQcGroup(
86
89
  qcCount = 3,
87
90
  ): FieldRecipeGroup[] {
88
91
  if (route === 'Mix into groups') {
89
- return [...groups, { name: 'QC_Pool', count: qcCount, color: qcColor }]
92
+ return [...groups, { name: QC_POOL_NAME, count: qcCount, color: qcColor }]
90
93
  }
91
94
  return groups
92
95
  }