@mat3ra/esse 2026.5.18-2 → 2026.5.27-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (383) hide show
  1. package/dist/js/esse/JSONSchemasGenerator.d.ts +2 -1
  2. package/dist/js/esse/JSONSchemasGenerator.js +1 -1
  3. package/dist/js/esse/JSONSchemasInterface.d.ts +1 -1
  4. package/dist/js/esse/JSONSchemasInterface.js +1 -1
  5. package/dist/js/esse/JSONSchemasInterfaceServer.js +3 -2
  6. package/dist/js/esse/schemaUtils.d.ts +1 -1
  7. package/dist/js/esse/schemaUtils.js +2 -1
  8. package/dist/js/esse/server/utils.d.ts +12 -0
  9. package/dist/js/esse/server/utils.js +68 -0
  10. package/dist/js/esse/utils.d.ts +0 -11
  11. package/dist/js/esse/utils.js +3 -60
  12. package/dist/js/example/job.json +38 -11
  13. package/dist/js/example/material.json +7 -1
  14. package/dist/js/example/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +35 -5
  15. package/dist/js/example/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +28 -4
  16. package/dist/js/example/materials_category/defective_structures/two_dimensional/adatom/configuration.json +28 -4
  17. package/dist/js/example/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +35 -5
  18. package/dist/js/example/materials_category/defective_structures/two_dimensional/island/configuration.json +42 -6
  19. package/dist/js/example/materials_category/defective_structures/two_dimensional/terrace/configuration.json +42 -6
  20. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +14 -2
  21. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +14 -2
  22. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +14 -2
  23. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +7 -1
  24. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanoribbon.json +21 -3
  25. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanotape.json +14 -2
  26. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab.json +14 -2
  27. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +14 -2
  28. package/dist/js/example/materials_category/processed_structures/two_dimensional/passivation/configuration.json +28 -4
  29. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +7 -1
  30. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +7 -1
  31. package/dist/js/example/materials_category_components/entities/core/three_dimensional/crystal.json +7 -1
  32. package/dist/js/example/materials_category_components/entities/core/two_dimensional/vacuum.json +7 -1
  33. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +7 -1
  34. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +7 -1
  35. package/dist/js/example/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +28 -4
  36. package/dist/js/example/materials_category_components/operations/core/combinations/merge.json +14 -2
  37. package/dist/js/example/materials_category_components/operations/core/combinations/stack.json +14 -2
  38. package/dist/js/example/materials_category_components/operations/core/modifications/perturb.json +7 -1
  39. package/dist/js/example/model.json +2 -1
  40. package/dist/js/example/software/application.json +1 -0
  41. package/dist/js/example/software/executable.json +3 -4
  42. package/dist/js/example/software/flavor.json +9 -2
  43. package/dist/js/example/software/template.json +5 -8
  44. package/dist/js/example/software_directory/modeling/espresso.json +2 -1
  45. package/dist/js/example/software_directory/modeling/nwchem.json +3 -1
  46. package/dist/js/example/software_directory/modeling/unit/execution.json +57 -15
  47. package/dist/js/example/software_directory/modeling/vasp.json +2 -1
  48. package/dist/js/example/software_directory/scripting/jupyter_lab.json +2 -1
  49. package/dist/js/example/software_directory/scripting/python.json +2 -1
  50. package/dist/js/example/software_directory/scripting/shell.json +2 -1
  51. package/dist/js/example/software_directory/scripting/unit/execution.json +57 -15
  52. package/dist/js/example/system/runtime_items.json +14 -0
  53. package/dist/js/example/workflow/subworkflow.json +32 -10
  54. package/dist/js/example/workflow/unit/assignment.json +5 -1
  55. package/dist/js/example/workflow/unit/condition.json +5 -1
  56. package/dist/js/example/workflow/unit/execution.json +29 -9
  57. package/dist/js/example/workflow/unit/io/api.json +1 -0
  58. package/dist/js/example/workflow/unit/io/db_collection.json +5 -0
  59. package/dist/js/example/workflow/unit/io/db_ids.json +6 -0
  60. package/dist/js/example/workflow/unit/io/object_storage.json +2 -1
  61. package/dist/js/example/workflow/unit/io.json +22 -2
  62. package/dist/js/example/workflow/unit/map.json +5 -1
  63. package/dist/js/example/workflow/unit/reduce.json +5 -1
  64. package/dist/js/example/workflow.json +38 -11
  65. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +5 -0
  66. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x.json +5 -0
  67. package/dist/js/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  68. package/dist/js/schema/context_providers_directory/by_application/qe_neb_context_provider.json +164 -6
  69. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_base_context_provider.json +10 -0
  70. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +17 -1
  71. package/dist/js/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  72. package/dist/js/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  73. package/dist/js/schema/context_providers_directory/collinear_magnetization_context_provider.json +14 -0
  74. package/dist/js/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  75. package/dist/js/schema/context_providers_directory/points_grid_data_provider.json +23 -6
  76. package/dist/js/schema/context_providers_directory/points_path_data_provider.json +6 -2
  77. package/dist/js/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  78. package/dist/js/schema/core/primitive/linked_list/named_node.json +2 -1
  79. package/dist/js/schema/core/primitive/linked_list/named_node_in_group.json +2 -1
  80. package/dist/js/schema/core/primitive/linked_list.json +4 -2
  81. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +3 -0
  82. package/dist/js/schema/in_memory_entity/named.json +3 -0
  83. package/dist/js/schema/in_memory_entity/named_defaultable.json +3 -0
  84. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +3 -0
  85. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +3 -0
  86. package/dist/js/schema/job/base.json +133 -132
  87. package/dist/js/schema/job/compute.json +1 -1
  88. package/dist/js/schema/job/compute_property.json +182 -0
  89. package/dist/js/schema/job.json +3829 -4566
  90. package/dist/js/schema/material/material_properties.json +736 -0
  91. package/dist/js/schema/material/metadata/boundary_conditions.json +32 -0
  92. package/dist/js/schema/material/metadata/bulk_properties.json +13 -0
  93. package/dist/js/schema/material/metadata/slab_properties.json +41 -0
  94. package/dist/js/schema/material/metadata.json +101 -0
  95. package/dist/js/schema/material.json +117 -27
  96. package/dist/js/schema/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +1069 -268
  97. package/dist/js/schema/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +1069 -268
  98. package/dist/js/schema/materials_category/defective_structures/two_dimensional/adatom/configuration.json +464 -108
  99. package/dist/js/schema/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +1069 -268
  100. package/dist/js/schema/materials_category/defective_structures/two_dimensional/island/configuration.json +698 -164
  101. package/dist/js/schema/materials_category/defective_structures/two_dimensional/terrace/configuration.json +698 -164
  102. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +116 -27
  103. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +232 -54
  104. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +232 -54
  105. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +116 -27
  106. package/dist/js/schema/materials_category/pristine_structures/three_dimensional/ideal_crystal.json +116 -27
  107. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanoribbon.json +348 -81
  108. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanotape.json +232 -54
  109. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab.json +232 -54
  110. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +232 -54
  111. package/dist/js/schema/materials_category/processed_structures/two_dimensional/passivation/configuration.json +233 -54
  112. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +116 -27
  113. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +116 -27
  114. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/void_region.json +116 -27
  115. package/dist/js/schema/materials_category_components/entities/core/three_dimensional/crystal.json +116 -27
  116. package/dist/js/schema/materials_category_components/entities/core/two_dimensional/vacuum.json +116 -27
  117. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +116 -27
  118. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +116 -27
  119. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.json +116 -27
  120. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.json +116 -27
  121. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_uniform.json +116 -27
  122. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/supercell.json +116 -27
  123. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers.json +116 -27
  124. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.json +116 -27
  125. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.json +116 -27
  126. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.json +116 -27
  127. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +348 -81
  128. package/dist/js/schema/materials_category_components/operations/core/modifications/perturb.json +117 -27
  129. package/dist/js/schema/method/categorized_method.json +4 -0
  130. package/dist/js/schema/method/unit_method.json +3 -0
  131. package/dist/js/schema/method.json +7 -1
  132. package/dist/js/schema/methods_directory/legacy/localorbital.json +7 -1
  133. package/dist/js/schema/methods_directory/legacy/pseudopotential.json +7 -1
  134. package/dist/js/schema/methods_directory/legacy/regression.json +4 -0
  135. package/dist/js/schema/methods_directory/legacy/unknown.json +7 -1
  136. package/dist/js/schema/methods_directory/mathematical/cg.json +2 -1
  137. package/dist/js/schema/methods_directory/mathematical/davidson.json +2 -1
  138. package/dist/js/schema/methods_directory/mathematical/regression.json +3 -2
  139. package/dist/js/schema/methods_directory/physical/ao/dunning.json +2 -1
  140. package/dist/js/schema/methods_directory/physical/ao/other.json +2 -1
  141. package/dist/js/schema/methods_directory/physical/ao/pople.json +2 -1
  142. package/dist/js/schema/methods_directory/physical/psp.json +2 -1
  143. package/dist/js/schema/methods_directory/physical/pw.json +2 -1
  144. package/dist/js/schema/methods_directory/physical/smearing.json +2 -1
  145. package/dist/js/schema/methods_directory/physical/tetrahedron.json +2 -1
  146. package/dist/js/schema/model/categorized_model.json +5 -0
  147. package/dist/js/schema/model/model_without_method.json +1 -0
  148. package/dist/js/schema/model.json +7 -2
  149. package/dist/js/schema/models_directory/double_hybrid.json +1 -0
  150. package/dist/js/schema/models_directory/gga.json +1 -0
  151. package/dist/js/schema/models_directory/gw.json +1 -0
  152. package/dist/js/schema/models_directory/hybrid.json +1 -0
  153. package/dist/js/schema/models_directory/lda.json +1 -0
  154. package/dist/js/schema/models_directory/legacy/any.json +488 -0
  155. package/dist/js/schema/models_directory/legacy/dft.json +267 -39
  156. package/dist/js/schema/models_directory/legacy/ml.json +10 -9
  157. package/dist/js/schema/models_directory/legacy/unknown.json +10 -9
  158. package/dist/js/schema/models_directory/mgga.json +1 -0
  159. package/dist/js/schema/models_directory/re.json +1 -0
  160. package/dist/js/schema/project.json +3 -0
  161. package/dist/js/schema/properties_directory/non_scalar/workflow.json +3682 -4421
  162. package/dist/js/schema/property/holder.json +3717 -4456
  163. package/dist/js/schema/software/application.json +53 -24
  164. package/dist/js/schema/software/application_properties.json +68 -0
  165. package/dist/js/schema/software/application_with_build_config.json +52 -23
  166. package/dist/js/schema/software/executable.json +67 -108
  167. package/dist/js/schema/software/executable_properties.json +24 -0
  168. package/dist/js/schema/software/flavor.json +90 -128
  169. package/dist/js/schema/software/flavor_properties.json +50 -0
  170. package/dist/js/schema/software/template.json +30 -35
  171. package/dist/js/schema/software/template_properties.json +44 -0
  172. package/dist/js/schema/software_directory/modeling/deepmd.json +48 -19
  173. package/dist/js/schema/software_directory/modeling/lammps.json +47 -18
  174. package/dist/js/schema/software_directory/modeling/nwchem.json +48 -19
  175. package/dist/js/schema/software_directory/modeling/unit/execution.json +2019 -455
  176. package/dist/js/schema/software_directory/modeling/vasp.json +48 -19
  177. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +48 -19
  178. package/dist/js/schema/software_directory/scripting/python.json +48 -19
  179. package/dist/js/schema/software_directory/scripting/shell.json +48 -19
  180. package/dist/js/schema/software_directory/scripting/unit/execution.json +2019 -455
  181. package/dist/js/schema/system/bankable.json +4 -0
  182. package/dist/js/schema/system/creator.json +2 -1
  183. package/dist/js/schema/system/creator_account.json +3 -0
  184. package/dist/js/schema/system/in_set.json +3 -0
  185. package/dist/js/schema/system/name.json +3 -0
  186. package/dist/js/schema/system/owner.json +2 -1
  187. package/dist/js/schema/system/path_entity.json +3 -0
  188. package/dist/js/schema/system/runtime_item.json +17 -0
  189. package/dist/js/schema/system/runtime_items.json +94 -0
  190. package/dist/js/schema/workflow/base.json +4591 -39
  191. package/dist/js/schema/workflow/base_flow.json +1 -1
  192. package/dist/js/schema/workflow/subworkflow/mixin.json +3919 -0
  193. package/dist/js/schema/workflow/subworkflow/unit.json +2365 -1560
  194. package/dist/js/schema/workflow/subworkflow.json +3137 -1852
  195. package/dist/js/schema/workflow/unit/assertion.json +96 -140
  196. package/dist/js/schema/workflow/unit/assignment.json +129 -173
  197. package/dist/js/schema/workflow/unit/base.json +90 -133
  198. package/dist/js/schema/workflow/unit/condition.json +132 -175
  199. package/dist/js/schema/workflow/unit/context/_base.json +20 -0
  200. package/dist/js/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  201. package/dist/js/schema/workflow/unit/context/item/boundaryConditions.json +63 -0
  202. package/dist/js/schema/workflow/unit/context/item/collinearMagnetization.json +82 -0
  203. package/dist/js/schema/workflow/unit/context/item/cutoffs.json +38 -0
  204. package/dist/js/schema/workflow/unit/context/item/dynamics.json +48 -0
  205. package/dist/js/schema/workflow/unit/context/item/grid.json +100 -0
  206. package/dist/js/schema/workflow/unit/context/item/hubbard_j.json +59 -0
  207. package/dist/js/schema/workflow/unit/context/item/hubbard_legacy.json +49 -0
  208. package/dist/js/schema/workflow/unit/context/item/hubbard_u.json +57 -0
  209. package/dist/js/schema/workflow/unit/context/item/hubbard_v.json +64 -0
  210. package/dist/js/schema/workflow/unit/context/item/input.json +712 -0
  211. package/dist/js/schema/workflow/unit/context/item/mlSettings.json +43 -0
  212. package/dist/js/schema/workflow/unit/context/item/mlTrainTestSplit.json +37 -0
  213. package/dist/js/schema/workflow/unit/context/item/neb.json +35 -0
  214. package/dist/js/schema/workflow/unit/context/item/nonCollinearMagnetization.json +150 -0
  215. package/dist/js/schema/workflow/unit/context/item/path.json +62 -0
  216. package/dist/js/schema/workflow/unit/context/item.json +1594 -0
  217. package/dist/js/schema/workflow/unit/execution.json +1928 -423
  218. package/dist/js/schema/workflow/unit/input/_input.json +74 -12
  219. package/dist/js/schema/workflow/unit/input/_inputItem.json +70 -10
  220. package/dist/js/schema/workflow/unit/input/_inputItemId.json +3 -1
  221. package/dist/js/schema/workflow/unit/io/api.json +5 -1
  222. package/dist/js/schema/workflow/unit/io/db_collection.json +24 -0
  223. package/dist/js/schema/workflow/unit/io/db_ids.json +22 -0
  224. package/dist/js/schema/workflow/unit/io/object_storage.json +5 -1
  225. package/dist/js/schema/workflow/unit/io.json +182 -253
  226. package/dist/js/schema/workflow/unit/map.json +134 -177
  227. package/dist/js/schema/workflow/unit/mixins/assertion.json +23 -0
  228. package/dist/js/schema/workflow/unit/mixins/assignment.json +57 -0
  229. package/dist/js/schema/workflow/unit/mixins/base.json +50 -0
  230. package/dist/js/schema/workflow/unit/mixins/condition.json +61 -0
  231. package/dist/js/schema/workflow/unit/mixins/execution.json +1998 -0
  232. package/dist/js/schema/workflow/unit/mixins/io.json +131 -0
  233. package/dist/js/schema/workflow/unit/mixins/map.json +60 -0
  234. package/dist/js/schema/workflow/unit/mixins/processing.json +27 -0
  235. package/dist/js/schema/workflow/unit/mixins/reduce.json +43 -0
  236. package/dist/js/schema/workflow/unit/mixins/subworkflow.json +11 -0
  237. package/dist/js/schema/workflow/unit/reduce.json +117 -160
  238. package/dist/js/schema/workflow/unit/subworkflow.json +91 -134
  239. package/dist/js/schema/workflow/unit.json +285 -2477
  240. package/dist/js/schema/workflow.json +3684 -4422
  241. package/dist/js/schemas.json +1 -1
  242. package/dist/js/scripts/compileTs.js +1 -1
  243. package/dist/js/scripts/setSchemaIds.js +2 -1
  244. package/dist/js/types.d.ts +27163 -15301
  245. package/dist/js/types.js +5 -5
  246. package/dist/js/utils/ajv.js +5 -4
  247. package/dist/js/utils/common.js +3 -2
  248. package/dist/js/utils/filesystem.js +3 -2
  249. package/example/material.json +7 -1
  250. package/example/model.json +2 -1
  251. package/example/software/application.json +1 -0
  252. package/example/software/executable.json +3 -4
  253. package/example/software/flavor.json +9 -2
  254. package/example/software/template.json +5 -8
  255. package/example/software_directory/modeling/espresso.json +2 -1
  256. package/example/software_directory/modeling/nwchem.json +4 -2
  257. package/example/software_directory/modeling/unit/execution.json +17 -2
  258. package/example/software_directory/modeling/vasp.json +2 -1
  259. package/example/software_directory/scripting/jupyter-lab.json +2 -1
  260. package/example/software_directory/scripting/python.json +2 -1
  261. package/example/software_directory/scripting/shell.json +2 -1
  262. package/example/software_directory/scripting/unit/execution.json +17 -2
  263. package/example/system/runtime_items.json +14 -0
  264. package/example/workflow/unit/assignment.json +5 -1
  265. package/example/workflow/unit/condition.json +5 -1
  266. package/example/workflow/unit/execution.json +7 -3
  267. package/example/workflow/unit/io/api.json +1 -0
  268. package/example/workflow/unit/io/db_collection.json +5 -0
  269. package/example/workflow/unit/io/db_ids.json +6 -0
  270. package/example/workflow/unit/io/object_storage.json +2 -1
  271. package/example/workflow/unit/io.json +9 -29
  272. package/example/workflow/unit/map.json +5 -1
  273. package/example/workflow/unit/reduce.json +5 -1
  274. package/example/workflow.json +6 -1
  275. package/package.json +2 -1
  276. package/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +6 -1
  277. package/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  278. package/schema/context_providers_directory/by_application/qe_neb_context_provider.json +12 -6
  279. package/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +10 -1
  280. package/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  281. package/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  282. package/schema/context_providers_directory/collinear_magnetization_context_provider.json +18 -4
  283. package/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  284. package/schema/context_providers_directory/points_grid_data_provider.json +24 -7
  285. package/schema/context_providers_directory/points_path_data_provider.json +7 -3
  286. package/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  287. package/schema/job/base.json +4 -5
  288. package/schema/job/compute.json +1 -1
  289. package/schema/job/compute_property.json +15 -0
  290. package/schema/material/material_properties.json +65 -0
  291. package/schema/material/metadata/boundary_conditions.json +24 -0
  292. package/schema/material/metadata/bulk_properties.json +13 -0
  293. package/schema/material/metadata/slab_properties.json +41 -0
  294. package/schema/material/metadata.json +27 -0
  295. package/schema/material.json +5 -57
  296. package/schema/method.json +7 -1
  297. package/schema/model.json +0 -1
  298. package/schema/models_directory/legacy/any.json +20 -0
  299. package/schema/models_directory/legacy/dft.json +63 -12
  300. package/schema/models_directory/legacy/ml.json +10 -7
  301. package/schema/models_directory/legacy/unknown.json +10 -7
  302. package/schema/software/application.json +4 -35
  303. package/schema/software/application_properties.json +68 -0
  304. package/schema/software/executable.json +5 -23
  305. package/schema/software/executable_properties.json +24 -0
  306. package/schema/software/flavor.json +6 -28
  307. package/schema/software/flavor_properties.json +33 -0
  308. package/schema/software/template.json +2 -26
  309. package/schema/software/template_properties.json +44 -0
  310. package/schema/system/bankable.json +5 -1
  311. package/schema/system/creator.json +4 -1
  312. package/schema/system/creator_account.json +4 -1
  313. package/schema/system/in_set.json +4 -1
  314. package/schema/system/name.json +4 -1
  315. package/schema/system/owner.json +4 -1
  316. package/schema/system/runtime_item.json +17 -0
  317. package/schema/system/runtime_items.json +42 -0
  318. package/schema/workflow/base.json +17 -17
  319. package/schema/workflow/subworkflow/mixin.json +48 -0
  320. package/schema/workflow/subworkflow/unit.json +0 -6
  321. package/schema/workflow/subworkflow.json +4 -31
  322. package/schema/workflow/unit/assertion.json +2 -16
  323. package/schema/workflow/unit/assignment.json +2 -34
  324. package/schema/workflow/unit/base.json +6 -51
  325. package/schema/workflow/unit/condition.json +2 -38
  326. package/schema/workflow/unit/context/_base.json +20 -0
  327. package/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  328. package/schema/workflow/unit/context/item/boundaryConditions.json +27 -0
  329. package/schema/workflow/unit/context/item/collinearMagnetization.json +27 -0
  330. package/schema/workflow/unit/context/item/cutoffs.json +20 -0
  331. package/schema/workflow/unit/context/item/dynamics.json +20 -0
  332. package/schema/workflow/unit/context/item/grid.json +31 -0
  333. package/schema/workflow/unit/context/item/hubbard_j.json +20 -0
  334. package/schema/workflow/unit/context/item/hubbard_legacy.json +20 -0
  335. package/schema/workflow/unit/context/item/hubbard_u.json +27 -0
  336. package/schema/workflow/unit/context/item/hubbard_v.json +20 -0
  337. package/schema/workflow/unit/context/item/input.json +47 -0
  338. package/schema/workflow/unit/context/item/mlSettings.json +20 -0
  339. package/schema/workflow/unit/context/item/mlTrainTestSplit.json +20 -0
  340. package/schema/workflow/unit/context/item/neb.json +20 -0
  341. package/schema/workflow/unit/context/item/nonCollinearMagnetization.json +27 -0
  342. package/schema/workflow/unit/context/item/path.json +33 -0
  343. package/schema/workflow/unit/context/item.json +55 -0
  344. package/schema/workflow/unit/execution.json +4 -25
  345. package/schema/workflow/unit/input/_input.json +1 -1
  346. package/schema/workflow/unit/input/_inputItem.json +9 -9
  347. package/schema/workflow/unit/input/_inputItemId.json +3 -1
  348. package/schema/workflow/unit/io/api.json +6 -2
  349. package/schema/workflow/unit/io/db_collection.json +24 -0
  350. package/schema/workflow/unit/io/db_ids.json +22 -0
  351. package/schema/workflow/unit/io/object_storage.json +6 -2
  352. package/schema/workflow/unit/io.json +2 -39
  353. package/schema/workflow/unit/map.json +2 -53
  354. package/schema/workflow/unit/mixins/assertion.json +23 -0
  355. package/schema/workflow/unit/mixins/assignment.json +42 -0
  356. package/schema/workflow/unit/mixins/base.json +50 -0
  357. package/schema/workflow/unit/mixins/condition.json +46 -0
  358. package/schema/workflow/unit/mixins/execution.json +49 -0
  359. package/schema/workflow/unit/mixins/io.json +46 -0
  360. package/schema/workflow/unit/mixins/map.json +61 -0
  361. package/schema/workflow/unit/{processing.json → mixins/processing.json} +3 -7
  362. package/schema/workflow/unit/mixins/reduce.json +44 -0
  363. package/schema/workflow/unit/mixins/subworkflow.json +12 -0
  364. package/schema/workflow/unit/reduce.json +2 -36
  365. package/schema/workflow/unit/subworkflow.json +4 -6
  366. package/schema/workflow/unit.json +1 -19
  367. package/schema/workflow.json +19 -15
  368. package/src/html/index.html +2 -1
  369. package/src/js/esse/JSONSchemasGenerator.ts +2 -1
  370. package/src/js/esse/JSONSchemasInterface.ts +1 -1
  371. package/src/js/esse/schemaUtils.ts +1 -1
  372. package/src/js/esse/server/utils.ts +82 -0
  373. package/src/js/esse/utils.ts +0 -74
  374. package/src/js/scripts/compileTs.ts +1 -1
  375. package/src/js/scripts/setSchemaIds.ts +1 -0
  376. package/src/js/utils/ajv.ts +1 -1
  377. package/dist/js/example/workflow/unit/io/db.json +0 -15
  378. package/dist/js/example/workflow/unit/processing.json +0 -13
  379. package/dist/js/schema/workflow/unit/io/db.json +0 -40
  380. package/dist/js/schema/workflow/unit/processing.json +0 -242
  381. package/example/workflow/unit/io/db.json +0 -15
  382. package/example/workflow/unit/processing.json +0 -13
  383. package/schema/workflow/unit/io/db.json +0 -40
@@ -0,0 +1,55 @@
1
+ {
2
+ "$id": "workflow/unit/context/item",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "context item schema",
5
+ "oneOf": [
6
+ {
7
+ "$ref": "item/input.json"
8
+ },
9
+ {
10
+ "$ref": "item/cutoffs.json"
11
+ },
12
+ {
13
+ "$ref": "item/grid.json"
14
+ },
15
+ {
16
+ "$ref": "item/path.json"
17
+ },
18
+ {
19
+ "$ref": "item/hubbard_j.json"
20
+ },
21
+ {
22
+ "$ref": "item/hubbard_u.json"
23
+ },
24
+ {
25
+ "$ref": "item/hubbard_v.json"
26
+ },
27
+ {
28
+ "$ref": "item/hubbard_legacy.json"
29
+ },
30
+ {
31
+ "$ref": "item/neb.json"
32
+ },
33
+ {
34
+ "$ref": "item/boundaryConditions.json"
35
+ },
36
+ {
37
+ "$ref": "item/mlSettings.json"
38
+ },
39
+ {
40
+ "$ref": "item/mlTrainTestSplit.json"
41
+ },
42
+ {
43
+ "$ref": "item/dynamics.json"
44
+ },
45
+ {
46
+ "$ref": "item/collinearMagnetization.json"
47
+ },
48
+ {
49
+ "$ref": "item/nonCollinearMagnetization.json"
50
+ }
51
+ ],
52
+ "discriminator": {
53
+ "propertyName": "name"
54
+ }
55
+ }
@@ -1,38 +1,17 @@
1
1
  {
2
2
  "$id": "workflow/unit/execution",
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "execution unit schema (base)",
4
+ "title": "execution unit schema",
5
5
  "type": "object",
6
6
  "allOf": [
7
7
  {
8
8
  "$ref": "./base.json"
9
9
  },
10
10
  {
11
- "$ref": "runtime/runtime_items.json"
12
- }
13
- ],
14
- "properties": {
15
- "type": {
16
- "const": "execution"
17
- },
18
- "application": {
19
- "description": "Contains information about the simulation engine/application.",
20
- "$ref": "../../software/application.json"
21
- },
22
- "executable": {
23
- "description": "Contains information about the simulation engine/application executable.",
24
- "$ref": "../../software/executable.json"
11
+ "$ref": "../../system/runtime_items.json"
25
12
  },
26
- "flavor": {
27
- "description": "Contains information about the simulation engine/application flavor.",
28
- "$ref": "../../software/flavor.json"
29
- },
30
- "input": {
31
- "description": "unit input (type to be specified by the application's execution unit)"
13
+ {
14
+ "$ref": "./mixins/execution.json"
32
15
  }
33
- },
34
- "required": [
35
- "input",
36
- "application"
37
16
  ]
38
17
  }
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "$id": "workflow/unit/input/-input",
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "execution unit input schema for physics-based simulation engines",
4
+ "title": "execution unit input schema",
5
5
  "type": "object",
6
6
  "properties": {
7
7
  "input": {
@@ -1,24 +1,24 @@
1
1
  {
2
2
  "$id": "workflow/unit/input/-inputItem",
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "execution unit input item schema for physics-based simulation engines",
4
+ "title": "execution unit input item schema",
5
5
  "type": "object",
6
6
  "properties": {
7
- "name": {
7
+ "template": {
8
8
  "description": "Input file name. e.g. pw_scf.in",
9
- "type": "string"
10
- },
11
- "content": {
12
- "description": "Content of the input file. e.g. &CONTROL calculation='scf' ...",
13
- "type": "string"
9
+ "$ref": "../../../software/template.json"
14
10
  },
15
11
  "rendered": {
16
12
  "description": "Rendered content of the input file. e.g. &CONTROL calculation='scf' ...",
17
13
  "type": "string"
14
+ },
15
+ "isManuallyChanged": {
16
+ "type": "boolean",
17
+ "default": false
18
18
  }
19
19
  },
20
20
  "required": [
21
- "name",
22
- "content"
21
+ "isManuallyChanged",
22
+ "template"
23
23
  ]
24
24
  }
@@ -15,5 +15,7 @@
15
15
  "type": "string"
16
16
  }
17
17
  },
18
- "additionalProperties": false
18
+ "required": [
19
+ "name"
20
+ ]
19
21
  }
@@ -4,6 +4,10 @@
4
4
  "title": "data IO rest API input schema",
5
5
  "type": "object",
6
6
  "properties": {
7
+ "type": {
8
+ "type": "string",
9
+ "const": "api"
10
+ },
7
11
  "endpoint": {
8
12
  "description": "rest API endpoint",
9
13
  "type": "string"
@@ -18,8 +22,8 @@
18
22
  }
19
23
  },
20
24
  "required": [
25
+ "type",
21
26
  "endpoint",
22
27
  "endpoint_options"
23
- ],
24
- "additionalProperties": true
28
+ ]
25
29
  }
@@ -0,0 +1,24 @@
1
+ {
2
+ "$id": "workflow/unit/io/db-collection",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "data IO database collection input/output schema (not used)",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "db_collection"
9
+ },
10
+ "collection": {
11
+ "description": "db collection name",
12
+ "type": "string"
13
+ },
14
+ "draft": {
15
+ "description": "whether the result should be saved as draft",
16
+ "type": "boolean"
17
+ }
18
+ },
19
+ "required": [
20
+ "type",
21
+ "collection",
22
+ "draft"
23
+ ]
24
+ }
@@ -0,0 +1,22 @@
1
+ {
2
+ "$id": "workflow/unit/io/db-ids",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "data IO database ids input/output schema (not used)",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "db_ids"
9
+ },
10
+ "ids": {
11
+ "description": "IDs of item to retrieve from db",
12
+ "type": "array",
13
+ "items": {
14
+ "type": "string"
15
+ }
16
+ }
17
+ },
18
+ "required": [
19
+ "type",
20
+ "ids"
21
+ ]
22
+ }
@@ -9,6 +9,10 @@
9
9
  }
10
10
  ],
11
11
  "properties": {
12
+ "type": {
13
+ "type": "string",
14
+ "const": "object_storage"
15
+ },
12
16
  "objectData": {
13
17
  "$ref": "../../../core/reusable/object_storage_container_data.json"
14
18
  },
@@ -18,7 +22,7 @@
18
22
  }
19
23
  },
20
24
  "required": [
25
+ "type",
21
26
  "objectData"
22
- ],
23
- "additionalProperties": true
27
+ ]
24
28
  }
@@ -6,46 +6,9 @@
6
6
  "allOf": [
7
7
  {
8
8
  "$ref": "./base.json"
9
- }
10
- ],
11
- "properties": {
12
- "type": {
13
- "const": "io"
14
- },
15
- "subtype": {
16
- "enum": [
17
- "input",
18
- "output",
19
- "dataFrame"
20
- ]
21
9
  },
22
- "source": {
23
- "enum": [
24
- "api",
25
- "db",
26
- "object_storage"
27
- ]
28
- },
29
- "input": {
30
- "type": "array",
31
- "items": {
32
- "oneOf": [
33
- {
34
- "$ref": "io/api.json"
35
- },
36
- {
37
- "$ref": "io/db.json"
38
- },
39
- {
40
- "$ref": "io/object_storage.json"
41
- }
42
- ]
43
- }
10
+ {
11
+ "$ref": "./mixins/io.json"
44
12
  }
45
- },
46
- "required": [
47
- "subtype",
48
- "source",
49
- "input"
50
13
  ]
51
14
  }
@@ -6,60 +6,9 @@
6
6
  "allOf": [
7
7
  {
8
8
  "$ref": "./base.json"
9
- }
10
- ],
11
- "properties": {
12
- "type": {
13
- "const": "map"
14
- },
15
- "workflowId": {
16
- "description": "Id of workflow to run inside map",
17
- "type": "string"
18
9
  },
19
- "input": {
20
- "description": "Input information for map.",
21
- "type": "object",
22
- "properties": {
23
- "target": {
24
- "description": "Name of the target variable to substitute using the values below. e.g. K_POINTS",
25
- "type": "string"
26
- },
27
- "scope": {
28
- "description": "Scope to retrieve `values` from, global or flowchartId. Optional if `values` is given.",
29
- "type": "string"
30
- },
31
- "name": {
32
- "description": "Name of the variable inside the scope to retrieve `values` from. Optional if `values` is given.",
33
- "type": "string"
34
- },
35
- "values": {
36
- "description": "Sequence of values for the target Jinja variable. Optional if `scope` and `name` are given. This can be used for map-reduce type parallel execution",
37
- "type": "array",
38
- "items": {
39
- "oneOf": [
40
- {
41
- "type": "string"
42
- },
43
- {
44
- "type": "number"
45
- },
46
- {
47
- "type": "object"
48
- }
49
- ]
50
- }
51
- },
52
- "useValues": {
53
- "type": "boolean"
54
- }
55
- },
56
- "required": [
57
- "target"
58
- ]
10
+ {
11
+ "$ref": "./mixins/map.json"
59
12
  }
60
- },
61
- "required": [
62
- "input",
63
- "workflowId"
64
13
  ]
65
14
  }
@@ -0,0 +1,23 @@
1
+ {
2
+ "$id": "workflow/unit/mixins/assertion",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "assertion unit mixin schema",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "assertion"
9
+ },
10
+ "statement": {
11
+ "type": "string",
12
+ "description": "The statement to be evaluated"
13
+ },
14
+ "errorMessage": {
15
+ "type": "string",
16
+ "description": "The error message to be displayed if the assertion fails"
17
+ }
18
+ },
19
+ "required": [
20
+ "name",
21
+ "statement"
22
+ ]
23
+ }
@@ -0,0 +1,42 @@
1
+ {
2
+ "$id": "workflow/unit/mixins/assignment",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "assignment unit mixin schema",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "assignment"
9
+ },
10
+ "input": {
11
+ "description": "Input information for assignment. if omitted, means that it is an initialization unit, otherwise it is an assignment.",
12
+ "type": "array",
13
+ "items": {
14
+ "$ref": "../input/_inputItemScope.json"
15
+ }
16
+ },
17
+ "operand": {
18
+ "description": "Name of the global variable. e.g. 'x'",
19
+ "type": "string"
20
+ },
21
+ "value": {
22
+ "description": "Value of the variable. The value content could be a simple integer, string or a python expression. e.g. '0' (initialization), 'sin(x)+1' (expression)",
23
+ "oneOf": [
24
+ {
25
+ "type": "string"
26
+ },
27
+ {
28
+ "type": "boolean"
29
+ },
30
+ {
31
+ "type": "number"
32
+ }
33
+ ]
34
+ }
35
+ },
36
+ "required": [
37
+ "name",
38
+ "operand",
39
+ "value"
40
+ ]
41
+ }
42
+
@@ -0,0 +1,50 @@
1
+ {
2
+ "$id": "workflow/unit/mixins/base",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "workflow base unit mixin schema",
5
+ "type": "object",
6
+ "properties": {
7
+ "isDraft": {
8
+ "type": "boolean"
9
+ },
10
+ "type": {
11
+ "description": "type of the unit",
12
+ "type": "string"
13
+ },
14
+ "name": {
15
+ "description": "name of the unit. e.g. pw_scf",
16
+ "type": "string"
17
+ },
18
+ "status": {
19
+ "description": "Status of the unit.",
20
+ "type": "string",
21
+ "enum": [
22
+ "idle",
23
+ "active",
24
+ "warning",
25
+ "error",
26
+ "finished"
27
+ ]
28
+ },
29
+ "head": {
30
+ "description": "Whether this unit is the first one to be executed.",
31
+ "type": "boolean"
32
+ },
33
+ "flowchartId": {
34
+ "description": "Identity of the unit in the workflow. Used to trace the execution flow of the workflow.",
35
+ "type": "string"
36
+ },
37
+ "next": {
38
+ "description": "Next unit's flowchartId. If empty, the current unit is the last.",
39
+ "type": "string"
40
+ },
41
+ "enableRender": {
42
+ "description": "Whether Rupy should attempt to use Jinja templating to add context variables into the unit",
43
+ "type": "boolean"
44
+ }
45
+ },
46
+ "required": [
47
+ "type",
48
+ "flowchartId"
49
+ ]
50
+ }
@@ -0,0 +1,46 @@
1
+ {
2
+ "$id": "workflow/unit/mixins/condition",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "condition unit mixin schema",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "condition"
9
+ },
10
+ "input": {
11
+ "description": "Input information for condition.",
12
+ "type": "array",
13
+ "items": {
14
+ "$ref": "../input/_inputItemScope.json"
15
+ }
16
+ },
17
+ "statement": {
18
+ "description": "Condition statement. e.g. 'abs(x-total_energy) < 1e-5'",
19
+ "type": "string"
20
+ },
21
+ "then": {
22
+ "description": "Flowchart ID reference for `then` part of the condition.",
23
+ "type": "string"
24
+ },
25
+ "else": {
26
+ "description": "Flowchart ID reference for `else` part of the condition.",
27
+ "type": "string"
28
+ },
29
+ "maxOccurrences": {
30
+ "description": "Maximum occurrence of the condition, usable for loops.",
31
+ "type": "integer"
32
+ },
33
+ "throwException": {
34
+ "description": "Throw exception on reaching to maximum occurence.",
35
+ "type": "boolean"
36
+ }
37
+ },
38
+ "required": [
39
+ "input",
40
+ "statement",
41
+ "then",
42
+ "else",
43
+ "maxOccurrences"
44
+ ]
45
+ }
46
+
@@ -0,0 +1,49 @@
1
+ {
2
+ "$id": "workflow/unit/mixins/execution",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "execution unit mixin schema",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "execution"
9
+ },
10
+ "application": {
11
+ "description": "Contains information about the simulation engine/application.",
12
+ "$ref": "../../../software/application.json"
13
+ },
14
+ "executable": {
15
+ "allOf": [
16
+ {
17
+ "$ref": "../../../in_memory_entity/named_defaultable.json"
18
+ },
19
+ {
20
+ "$ref": "../../../software/executable_properties.json"
21
+ }
22
+ ]
23
+ },
24
+ "flavor": {
25
+ "description": "Contains information about the simulation engine/application flavor.",
26
+ "$ref": "../../../software/flavor.json"
27
+ },
28
+ "input": {
29
+ "type": "array",
30
+ "items": {
31
+ "$ref": "../input/_inputItem.json"
32
+ }
33
+ },
34
+ "context": {
35
+ "type": "array",
36
+ "items": {
37
+ "$ref": "../context/item.json"
38
+ }
39
+ }
40
+ },
41
+ "required": [
42
+ "type",
43
+ "input",
44
+ "application",
45
+ "executable",
46
+ "flavor",
47
+ "context"
48
+ ]
49
+ }
@@ -0,0 +1,46 @@
1
+ {
2
+ "$id": "workflow/unit/mixins/io",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "data IO unit mixin schema",
5
+ "type": "object",
6
+ "properties": {
7
+ "type": {
8
+ "const": "io"
9
+ },
10
+ "subtype": {
11
+ "enum": [
12
+ "input",
13
+ "output",
14
+ "dataFrame"
15
+ ]
16
+ },
17
+ "source": {
18
+ "enum": [
19
+ "api",
20
+ "object_storage"
21
+ ]
22
+ },
23
+ "input": {
24
+ "type": "array",
25
+ "items": {
26
+ "type": "object",
27
+ "oneOf": [
28
+ {
29
+ "$ref": "../io/api.json"
30
+ },
31
+ {
32
+ "$ref": "../io/object_storage.json"
33
+ }
34
+ ],
35
+ "discriminator": {
36
+ "propertyName": "type"
37
+ }
38
+ }
39
+ }
40
+ },
41
+ "required": [
42
+ "subtype",
43
+ "source",
44
+ "input"
45
+ ]
46
+ }