@mat3ra/esse 2026.5.18-2 → 2026.5.27-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (383) hide show
  1. package/dist/js/esse/JSONSchemasGenerator.d.ts +2 -1
  2. package/dist/js/esse/JSONSchemasGenerator.js +1 -1
  3. package/dist/js/esse/JSONSchemasInterface.d.ts +1 -1
  4. package/dist/js/esse/JSONSchemasInterface.js +1 -1
  5. package/dist/js/esse/JSONSchemasInterfaceServer.js +3 -2
  6. package/dist/js/esse/schemaUtils.d.ts +1 -1
  7. package/dist/js/esse/schemaUtils.js +2 -1
  8. package/dist/js/esse/server/utils.d.ts +12 -0
  9. package/dist/js/esse/server/utils.js +68 -0
  10. package/dist/js/esse/utils.d.ts +0 -11
  11. package/dist/js/esse/utils.js +3 -60
  12. package/dist/js/example/job.json +38 -11
  13. package/dist/js/example/material.json +7 -1
  14. package/dist/js/example/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +35 -5
  15. package/dist/js/example/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +28 -4
  16. package/dist/js/example/materials_category/defective_structures/two_dimensional/adatom/configuration.json +28 -4
  17. package/dist/js/example/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +35 -5
  18. package/dist/js/example/materials_category/defective_structures/two_dimensional/island/configuration.json +42 -6
  19. package/dist/js/example/materials_category/defective_structures/two_dimensional/terrace/configuration.json +42 -6
  20. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +14 -2
  21. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +14 -2
  22. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +14 -2
  23. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +7 -1
  24. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanoribbon.json +21 -3
  25. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanotape.json +14 -2
  26. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab.json +14 -2
  27. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +14 -2
  28. package/dist/js/example/materials_category/processed_structures/two_dimensional/passivation/configuration.json +28 -4
  29. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +7 -1
  30. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +7 -1
  31. package/dist/js/example/materials_category_components/entities/core/three_dimensional/crystal.json +7 -1
  32. package/dist/js/example/materials_category_components/entities/core/two_dimensional/vacuum.json +7 -1
  33. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +7 -1
  34. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +7 -1
  35. package/dist/js/example/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +28 -4
  36. package/dist/js/example/materials_category_components/operations/core/combinations/merge.json +14 -2
  37. package/dist/js/example/materials_category_components/operations/core/combinations/stack.json +14 -2
  38. package/dist/js/example/materials_category_components/operations/core/modifications/perturb.json +7 -1
  39. package/dist/js/example/model.json +2 -1
  40. package/dist/js/example/software/application.json +1 -0
  41. package/dist/js/example/software/executable.json +3 -4
  42. package/dist/js/example/software/flavor.json +9 -2
  43. package/dist/js/example/software/template.json +5 -8
  44. package/dist/js/example/software_directory/modeling/espresso.json +2 -1
  45. package/dist/js/example/software_directory/modeling/nwchem.json +3 -1
  46. package/dist/js/example/software_directory/modeling/unit/execution.json +57 -15
  47. package/dist/js/example/software_directory/modeling/vasp.json +2 -1
  48. package/dist/js/example/software_directory/scripting/jupyter_lab.json +2 -1
  49. package/dist/js/example/software_directory/scripting/python.json +2 -1
  50. package/dist/js/example/software_directory/scripting/shell.json +2 -1
  51. package/dist/js/example/software_directory/scripting/unit/execution.json +57 -15
  52. package/dist/js/example/system/runtime_items.json +14 -0
  53. package/dist/js/example/workflow/subworkflow.json +32 -10
  54. package/dist/js/example/workflow/unit/assignment.json +5 -1
  55. package/dist/js/example/workflow/unit/condition.json +5 -1
  56. package/dist/js/example/workflow/unit/execution.json +29 -9
  57. package/dist/js/example/workflow/unit/io/api.json +1 -0
  58. package/dist/js/example/workflow/unit/io/db_collection.json +5 -0
  59. package/dist/js/example/workflow/unit/io/db_ids.json +6 -0
  60. package/dist/js/example/workflow/unit/io/object_storage.json +2 -1
  61. package/dist/js/example/workflow/unit/io.json +22 -2
  62. package/dist/js/example/workflow/unit/map.json +5 -1
  63. package/dist/js/example/workflow/unit/reduce.json +5 -1
  64. package/dist/js/example/workflow.json +38 -11
  65. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +5 -0
  66. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x.json +5 -0
  67. package/dist/js/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  68. package/dist/js/schema/context_providers_directory/by_application/qe_neb_context_provider.json +164 -6
  69. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_base_context_provider.json +10 -0
  70. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +17 -1
  71. package/dist/js/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  72. package/dist/js/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  73. package/dist/js/schema/context_providers_directory/collinear_magnetization_context_provider.json +14 -0
  74. package/dist/js/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  75. package/dist/js/schema/context_providers_directory/points_grid_data_provider.json +23 -6
  76. package/dist/js/schema/context_providers_directory/points_path_data_provider.json +6 -2
  77. package/dist/js/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  78. package/dist/js/schema/core/primitive/linked_list/named_node.json +2 -1
  79. package/dist/js/schema/core/primitive/linked_list/named_node_in_group.json +2 -1
  80. package/dist/js/schema/core/primitive/linked_list.json +4 -2
  81. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +3 -0
  82. package/dist/js/schema/in_memory_entity/named.json +3 -0
  83. package/dist/js/schema/in_memory_entity/named_defaultable.json +3 -0
  84. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +3 -0
  85. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +3 -0
  86. package/dist/js/schema/job/base.json +133 -132
  87. package/dist/js/schema/job/compute.json +1 -1
  88. package/dist/js/schema/job/compute_property.json +182 -0
  89. package/dist/js/schema/job.json +3829 -4566
  90. package/dist/js/schema/material/material_properties.json +736 -0
  91. package/dist/js/schema/material/metadata/boundary_conditions.json +32 -0
  92. package/dist/js/schema/material/metadata/bulk_properties.json +13 -0
  93. package/dist/js/schema/material/metadata/slab_properties.json +41 -0
  94. package/dist/js/schema/material/metadata.json +101 -0
  95. package/dist/js/schema/material.json +117 -27
  96. package/dist/js/schema/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +1069 -268
  97. package/dist/js/schema/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +1069 -268
  98. package/dist/js/schema/materials_category/defective_structures/two_dimensional/adatom/configuration.json +464 -108
  99. package/dist/js/schema/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +1069 -268
  100. package/dist/js/schema/materials_category/defective_structures/two_dimensional/island/configuration.json +698 -164
  101. package/dist/js/schema/materials_category/defective_structures/two_dimensional/terrace/configuration.json +698 -164
  102. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +116 -27
  103. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +232 -54
  104. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +232 -54
  105. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +116 -27
  106. package/dist/js/schema/materials_category/pristine_structures/three_dimensional/ideal_crystal.json +116 -27
  107. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanoribbon.json +348 -81
  108. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanotape.json +232 -54
  109. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab.json +232 -54
  110. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +232 -54
  111. package/dist/js/schema/materials_category/processed_structures/two_dimensional/passivation/configuration.json +233 -54
  112. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +116 -27
  113. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +116 -27
  114. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/void_region.json +116 -27
  115. package/dist/js/schema/materials_category_components/entities/core/three_dimensional/crystal.json +116 -27
  116. package/dist/js/schema/materials_category_components/entities/core/two_dimensional/vacuum.json +116 -27
  117. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +116 -27
  118. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +116 -27
  119. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.json +116 -27
  120. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.json +116 -27
  121. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_uniform.json +116 -27
  122. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/supercell.json +116 -27
  123. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers.json +116 -27
  124. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.json +116 -27
  125. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.json +116 -27
  126. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.json +116 -27
  127. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +348 -81
  128. package/dist/js/schema/materials_category_components/operations/core/modifications/perturb.json +117 -27
  129. package/dist/js/schema/method/categorized_method.json +4 -0
  130. package/dist/js/schema/method/unit_method.json +3 -0
  131. package/dist/js/schema/method.json +7 -1
  132. package/dist/js/schema/methods_directory/legacy/localorbital.json +7 -1
  133. package/dist/js/schema/methods_directory/legacy/pseudopotential.json +7 -1
  134. package/dist/js/schema/methods_directory/legacy/regression.json +4 -0
  135. package/dist/js/schema/methods_directory/legacy/unknown.json +7 -1
  136. package/dist/js/schema/methods_directory/mathematical/cg.json +2 -1
  137. package/dist/js/schema/methods_directory/mathematical/davidson.json +2 -1
  138. package/dist/js/schema/methods_directory/mathematical/regression.json +3 -2
  139. package/dist/js/schema/methods_directory/physical/ao/dunning.json +2 -1
  140. package/dist/js/schema/methods_directory/physical/ao/other.json +2 -1
  141. package/dist/js/schema/methods_directory/physical/ao/pople.json +2 -1
  142. package/dist/js/schema/methods_directory/physical/psp.json +2 -1
  143. package/dist/js/schema/methods_directory/physical/pw.json +2 -1
  144. package/dist/js/schema/methods_directory/physical/smearing.json +2 -1
  145. package/dist/js/schema/methods_directory/physical/tetrahedron.json +2 -1
  146. package/dist/js/schema/model/categorized_model.json +5 -0
  147. package/dist/js/schema/model/model_without_method.json +1 -0
  148. package/dist/js/schema/model.json +7 -2
  149. package/dist/js/schema/models_directory/double_hybrid.json +1 -0
  150. package/dist/js/schema/models_directory/gga.json +1 -0
  151. package/dist/js/schema/models_directory/gw.json +1 -0
  152. package/dist/js/schema/models_directory/hybrid.json +1 -0
  153. package/dist/js/schema/models_directory/lda.json +1 -0
  154. package/dist/js/schema/models_directory/legacy/any.json +488 -0
  155. package/dist/js/schema/models_directory/legacy/dft.json +267 -39
  156. package/dist/js/schema/models_directory/legacy/ml.json +10 -9
  157. package/dist/js/schema/models_directory/legacy/unknown.json +10 -9
  158. package/dist/js/schema/models_directory/mgga.json +1 -0
  159. package/dist/js/schema/models_directory/re.json +1 -0
  160. package/dist/js/schema/project.json +3 -0
  161. package/dist/js/schema/properties_directory/non_scalar/workflow.json +3682 -4421
  162. package/dist/js/schema/property/holder.json +3717 -4456
  163. package/dist/js/schema/software/application.json +53 -24
  164. package/dist/js/schema/software/application_properties.json +68 -0
  165. package/dist/js/schema/software/application_with_build_config.json +52 -23
  166. package/dist/js/schema/software/executable.json +67 -108
  167. package/dist/js/schema/software/executable_properties.json +24 -0
  168. package/dist/js/schema/software/flavor.json +90 -128
  169. package/dist/js/schema/software/flavor_properties.json +50 -0
  170. package/dist/js/schema/software/template.json +30 -35
  171. package/dist/js/schema/software/template_properties.json +44 -0
  172. package/dist/js/schema/software_directory/modeling/deepmd.json +48 -19
  173. package/dist/js/schema/software_directory/modeling/lammps.json +47 -18
  174. package/dist/js/schema/software_directory/modeling/nwchem.json +48 -19
  175. package/dist/js/schema/software_directory/modeling/unit/execution.json +2019 -455
  176. package/dist/js/schema/software_directory/modeling/vasp.json +48 -19
  177. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +48 -19
  178. package/dist/js/schema/software_directory/scripting/python.json +48 -19
  179. package/dist/js/schema/software_directory/scripting/shell.json +48 -19
  180. package/dist/js/schema/software_directory/scripting/unit/execution.json +2019 -455
  181. package/dist/js/schema/system/bankable.json +4 -0
  182. package/dist/js/schema/system/creator.json +2 -1
  183. package/dist/js/schema/system/creator_account.json +3 -0
  184. package/dist/js/schema/system/in_set.json +3 -0
  185. package/dist/js/schema/system/name.json +3 -0
  186. package/dist/js/schema/system/owner.json +2 -1
  187. package/dist/js/schema/system/path_entity.json +3 -0
  188. package/dist/js/schema/system/runtime_item.json +17 -0
  189. package/dist/js/schema/system/runtime_items.json +94 -0
  190. package/dist/js/schema/workflow/base.json +4591 -39
  191. package/dist/js/schema/workflow/base_flow.json +1 -1
  192. package/dist/js/schema/workflow/subworkflow/mixin.json +3919 -0
  193. package/dist/js/schema/workflow/subworkflow/unit.json +2365 -1560
  194. package/dist/js/schema/workflow/subworkflow.json +3137 -1852
  195. package/dist/js/schema/workflow/unit/assertion.json +96 -140
  196. package/dist/js/schema/workflow/unit/assignment.json +129 -173
  197. package/dist/js/schema/workflow/unit/base.json +90 -133
  198. package/dist/js/schema/workflow/unit/condition.json +132 -175
  199. package/dist/js/schema/workflow/unit/context/_base.json +20 -0
  200. package/dist/js/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  201. package/dist/js/schema/workflow/unit/context/item/boundaryConditions.json +63 -0
  202. package/dist/js/schema/workflow/unit/context/item/collinearMagnetization.json +82 -0
  203. package/dist/js/schema/workflow/unit/context/item/cutoffs.json +38 -0
  204. package/dist/js/schema/workflow/unit/context/item/dynamics.json +48 -0
  205. package/dist/js/schema/workflow/unit/context/item/grid.json +100 -0
  206. package/dist/js/schema/workflow/unit/context/item/hubbard_j.json +59 -0
  207. package/dist/js/schema/workflow/unit/context/item/hubbard_legacy.json +49 -0
  208. package/dist/js/schema/workflow/unit/context/item/hubbard_u.json +57 -0
  209. package/dist/js/schema/workflow/unit/context/item/hubbard_v.json +64 -0
  210. package/dist/js/schema/workflow/unit/context/item/input.json +712 -0
  211. package/dist/js/schema/workflow/unit/context/item/mlSettings.json +43 -0
  212. package/dist/js/schema/workflow/unit/context/item/mlTrainTestSplit.json +37 -0
  213. package/dist/js/schema/workflow/unit/context/item/neb.json +35 -0
  214. package/dist/js/schema/workflow/unit/context/item/nonCollinearMagnetization.json +150 -0
  215. package/dist/js/schema/workflow/unit/context/item/path.json +62 -0
  216. package/dist/js/schema/workflow/unit/context/item.json +1594 -0
  217. package/dist/js/schema/workflow/unit/execution.json +1928 -423
  218. package/dist/js/schema/workflow/unit/input/_input.json +74 -12
  219. package/dist/js/schema/workflow/unit/input/_inputItem.json +70 -10
  220. package/dist/js/schema/workflow/unit/input/_inputItemId.json +3 -1
  221. package/dist/js/schema/workflow/unit/io/api.json +5 -1
  222. package/dist/js/schema/workflow/unit/io/db_collection.json +24 -0
  223. package/dist/js/schema/workflow/unit/io/db_ids.json +22 -0
  224. package/dist/js/schema/workflow/unit/io/object_storage.json +5 -1
  225. package/dist/js/schema/workflow/unit/io.json +182 -253
  226. package/dist/js/schema/workflow/unit/map.json +134 -177
  227. package/dist/js/schema/workflow/unit/mixins/assertion.json +23 -0
  228. package/dist/js/schema/workflow/unit/mixins/assignment.json +57 -0
  229. package/dist/js/schema/workflow/unit/mixins/base.json +50 -0
  230. package/dist/js/schema/workflow/unit/mixins/condition.json +61 -0
  231. package/dist/js/schema/workflow/unit/mixins/execution.json +1998 -0
  232. package/dist/js/schema/workflow/unit/mixins/io.json +131 -0
  233. package/dist/js/schema/workflow/unit/mixins/map.json +60 -0
  234. package/dist/js/schema/workflow/unit/mixins/processing.json +27 -0
  235. package/dist/js/schema/workflow/unit/mixins/reduce.json +43 -0
  236. package/dist/js/schema/workflow/unit/mixins/subworkflow.json +11 -0
  237. package/dist/js/schema/workflow/unit/reduce.json +117 -160
  238. package/dist/js/schema/workflow/unit/subworkflow.json +91 -134
  239. package/dist/js/schema/workflow/unit.json +285 -2477
  240. package/dist/js/schema/workflow.json +3684 -4422
  241. package/dist/js/schemas.json +1 -1
  242. package/dist/js/scripts/compileTs.js +1 -1
  243. package/dist/js/scripts/setSchemaIds.js +2 -1
  244. package/dist/js/types.d.ts +27163 -15301
  245. package/dist/js/types.js +5 -5
  246. package/dist/js/utils/ajv.js +5 -4
  247. package/dist/js/utils/common.js +3 -2
  248. package/dist/js/utils/filesystem.js +3 -2
  249. package/example/material.json +7 -1
  250. package/example/model.json +2 -1
  251. package/example/software/application.json +1 -0
  252. package/example/software/executable.json +3 -4
  253. package/example/software/flavor.json +9 -2
  254. package/example/software/template.json +5 -8
  255. package/example/software_directory/modeling/espresso.json +2 -1
  256. package/example/software_directory/modeling/nwchem.json +4 -2
  257. package/example/software_directory/modeling/unit/execution.json +17 -2
  258. package/example/software_directory/modeling/vasp.json +2 -1
  259. package/example/software_directory/scripting/jupyter-lab.json +2 -1
  260. package/example/software_directory/scripting/python.json +2 -1
  261. package/example/software_directory/scripting/shell.json +2 -1
  262. package/example/software_directory/scripting/unit/execution.json +17 -2
  263. package/example/system/runtime_items.json +14 -0
  264. package/example/workflow/unit/assignment.json +5 -1
  265. package/example/workflow/unit/condition.json +5 -1
  266. package/example/workflow/unit/execution.json +7 -3
  267. package/example/workflow/unit/io/api.json +1 -0
  268. package/example/workflow/unit/io/db_collection.json +5 -0
  269. package/example/workflow/unit/io/db_ids.json +6 -0
  270. package/example/workflow/unit/io/object_storage.json +2 -1
  271. package/example/workflow/unit/io.json +9 -29
  272. package/example/workflow/unit/map.json +5 -1
  273. package/example/workflow/unit/reduce.json +5 -1
  274. package/example/workflow.json +6 -1
  275. package/package.json +2 -1
  276. package/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +6 -1
  277. package/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  278. package/schema/context_providers_directory/by_application/qe_neb_context_provider.json +12 -6
  279. package/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +10 -1
  280. package/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  281. package/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  282. package/schema/context_providers_directory/collinear_magnetization_context_provider.json +18 -4
  283. package/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  284. package/schema/context_providers_directory/points_grid_data_provider.json +24 -7
  285. package/schema/context_providers_directory/points_path_data_provider.json +7 -3
  286. package/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  287. package/schema/job/base.json +4 -5
  288. package/schema/job/compute.json +1 -1
  289. package/schema/job/compute_property.json +15 -0
  290. package/schema/material/material_properties.json +65 -0
  291. package/schema/material/metadata/boundary_conditions.json +24 -0
  292. package/schema/material/metadata/bulk_properties.json +13 -0
  293. package/schema/material/metadata/slab_properties.json +41 -0
  294. package/schema/material/metadata.json +27 -0
  295. package/schema/material.json +5 -57
  296. package/schema/method.json +7 -1
  297. package/schema/model.json +0 -1
  298. package/schema/models_directory/legacy/any.json +20 -0
  299. package/schema/models_directory/legacy/dft.json +63 -12
  300. package/schema/models_directory/legacy/ml.json +10 -7
  301. package/schema/models_directory/legacy/unknown.json +10 -7
  302. package/schema/software/application.json +4 -35
  303. package/schema/software/application_properties.json +68 -0
  304. package/schema/software/executable.json +5 -23
  305. package/schema/software/executable_properties.json +24 -0
  306. package/schema/software/flavor.json +6 -28
  307. package/schema/software/flavor_properties.json +33 -0
  308. package/schema/software/template.json +2 -26
  309. package/schema/software/template_properties.json +44 -0
  310. package/schema/system/bankable.json +5 -1
  311. package/schema/system/creator.json +4 -1
  312. package/schema/system/creator_account.json +4 -1
  313. package/schema/system/in_set.json +4 -1
  314. package/schema/system/name.json +4 -1
  315. package/schema/system/owner.json +4 -1
  316. package/schema/system/runtime_item.json +17 -0
  317. package/schema/system/runtime_items.json +42 -0
  318. package/schema/workflow/base.json +17 -17
  319. package/schema/workflow/subworkflow/mixin.json +48 -0
  320. package/schema/workflow/subworkflow/unit.json +0 -6
  321. package/schema/workflow/subworkflow.json +4 -31
  322. package/schema/workflow/unit/assertion.json +2 -16
  323. package/schema/workflow/unit/assignment.json +2 -34
  324. package/schema/workflow/unit/base.json +6 -51
  325. package/schema/workflow/unit/condition.json +2 -38
  326. package/schema/workflow/unit/context/_base.json +20 -0
  327. package/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  328. package/schema/workflow/unit/context/item/boundaryConditions.json +27 -0
  329. package/schema/workflow/unit/context/item/collinearMagnetization.json +27 -0
  330. package/schema/workflow/unit/context/item/cutoffs.json +20 -0
  331. package/schema/workflow/unit/context/item/dynamics.json +20 -0
  332. package/schema/workflow/unit/context/item/grid.json +31 -0
  333. package/schema/workflow/unit/context/item/hubbard_j.json +20 -0
  334. package/schema/workflow/unit/context/item/hubbard_legacy.json +20 -0
  335. package/schema/workflow/unit/context/item/hubbard_u.json +27 -0
  336. package/schema/workflow/unit/context/item/hubbard_v.json +20 -0
  337. package/schema/workflow/unit/context/item/input.json +47 -0
  338. package/schema/workflow/unit/context/item/mlSettings.json +20 -0
  339. package/schema/workflow/unit/context/item/mlTrainTestSplit.json +20 -0
  340. package/schema/workflow/unit/context/item/neb.json +20 -0
  341. package/schema/workflow/unit/context/item/nonCollinearMagnetization.json +27 -0
  342. package/schema/workflow/unit/context/item/path.json +33 -0
  343. package/schema/workflow/unit/context/item.json +55 -0
  344. package/schema/workflow/unit/execution.json +4 -25
  345. package/schema/workflow/unit/input/_input.json +1 -1
  346. package/schema/workflow/unit/input/_inputItem.json +9 -9
  347. package/schema/workflow/unit/input/_inputItemId.json +3 -1
  348. package/schema/workflow/unit/io/api.json +6 -2
  349. package/schema/workflow/unit/io/db_collection.json +24 -0
  350. package/schema/workflow/unit/io/db_ids.json +22 -0
  351. package/schema/workflow/unit/io/object_storage.json +6 -2
  352. package/schema/workflow/unit/io.json +2 -39
  353. package/schema/workflow/unit/map.json +2 -53
  354. package/schema/workflow/unit/mixins/assertion.json +23 -0
  355. package/schema/workflow/unit/mixins/assignment.json +42 -0
  356. package/schema/workflow/unit/mixins/base.json +50 -0
  357. package/schema/workflow/unit/mixins/condition.json +46 -0
  358. package/schema/workflow/unit/mixins/execution.json +49 -0
  359. package/schema/workflow/unit/mixins/io.json +46 -0
  360. package/schema/workflow/unit/mixins/map.json +61 -0
  361. package/schema/workflow/unit/{processing.json → mixins/processing.json} +3 -7
  362. package/schema/workflow/unit/mixins/reduce.json +44 -0
  363. package/schema/workflow/unit/mixins/subworkflow.json +12 -0
  364. package/schema/workflow/unit/reduce.json +2 -36
  365. package/schema/workflow/unit/subworkflow.json +4 -6
  366. package/schema/workflow/unit.json +1 -19
  367. package/schema/workflow.json +19 -15
  368. package/src/html/index.html +2 -1
  369. package/src/js/esse/JSONSchemasGenerator.ts +2 -1
  370. package/src/js/esse/JSONSchemasInterface.ts +1 -1
  371. package/src/js/esse/schemaUtils.ts +1 -1
  372. package/src/js/esse/server/utils.ts +82 -0
  373. package/src/js/esse/utils.ts +0 -74
  374. package/src/js/scripts/compileTs.ts +1 -1
  375. package/src/js/scripts/setSchemaIds.ts +1 -0
  376. package/src/js/utils/ajv.ts +1 -1
  377. package/dist/js/example/workflow/unit/io/db.json +0 -15
  378. package/dist/js/example/workflow/unit/processing.json +0 -13
  379. package/dist/js/schema/workflow/unit/io/db.json +0 -40
  380. package/dist/js/schema/workflow/unit/processing.json +0 -242
  381. package/example/workflow/unit/io/db.json +0 -15
  382. package/example/workflow/unit/processing.json +0 -13
  383. package/schema/workflow/unit/io/db.json +0 -40
@@ -3,48 +3,18 @@
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
4
  "title": "flavor schema",
5
5
  "type": "object",
6
+ "required": [
7
+ "applicationName",
8
+ "applicationVersion",
9
+ "executableName",
10
+ "input",
11
+ "monitors",
12
+ "name",
13
+ "postProcessors",
14
+ "preProcessors",
15
+ "results"
16
+ ],
6
17
  "properties": {
7
- "executableId": {
8
- "description": "_id of the executable this flavor belongs to",
9
- "type": "string"
10
- },
11
- "executableName": {
12
- "description": "name of the executable this flavor belongs to",
13
- "type": "string"
14
- },
15
- "applicationName": {
16
- "description": "name of the application this flavor belongs to",
17
- "type": "string"
18
- },
19
- "input": {
20
- "title": "execution unit input schema",
21
- "type": "array",
22
- "items": {
23
- "$schema": "http://json-schema.org/draft-07/schema#",
24
- "title": "execution unit input id item schema for physics-based simulation engines",
25
- "type": "object",
26
- "additionalProperties": false,
27
- "properties": {
28
- "templateId": {
29
- "type": "string"
30
- },
31
- "templateName": {
32
- "type": "string"
33
- },
34
- "name": {
35
- "description": "name of the resulting input file, if different than template name",
36
- "type": "string"
37
- }
38
- }
39
- }
40
- },
41
- "supportedApplicationVersions": {
42
- "description": "list of application versions this flavor supports",
43
- "type": "array",
44
- "items": {
45
- "type": "string"
46
- }
47
- },
48
18
  "_id": {
49
19
  "description": "entity identity",
50
20
  "type": "string"
@@ -75,30 +45,19 @@
75
45
  "type": "array",
76
46
  "items": {
77
47
  "$schema": "http://json-schema.org/draft-07/schema#",
78
- "title": "runtime item schema",
79
- "oneOf": [
80
- {
81
- "$schema": "http://json-schema.org/draft-07/schema#",
82
- "title": "name result schema",
83
- "type": "object",
84
- "properties": {
85
- "name": {
86
- "description": "The name of this item. e.g. scf_accuracy",
87
- "type": "string"
88
- }
89
- },
90
- "additionalProperties": true,
91
- "required": [
92
- "name"
93
- ]
94
- },
95
- {
96
- "$schema": "http://json-schema.org/draft-07/schema#",
97
- "title": "RuntimeItemString",
98
- "description": "name of runtime item in shortened notation",
48
+ "title": "runtime item name object schema",
49
+ "description": "A runtime item is a name of a pre-processor, post-processor, monitor, or result for a calculation. Can contain additional properties basename, filetype etc.",
50
+ "type": "object",
51
+ "required": [
52
+ "name"
53
+ ],
54
+ "additionalProperties": true,
55
+ "properties": {
56
+ "name": {
57
+ "description": "The name of this item. e.g. scf_accuracy",
99
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  "type": "string"
100
59
  }
101
- ]
60
+ }
102
61
  }
103
62
  },
104
63
  "postProcessors": {
@@ -106,30 +65,19 @@
106
65
  "type": "array",
107
66
  "items": {
108
67
  "$schema": "http://json-schema.org/draft-07/schema#",
109
- "title": "runtime item schema",
110
- "oneOf": [
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- {
112
- "$schema": "http://json-schema.org/draft-07/schema#",
113
- "title": "name result schema",
114
- "type": "object",
115
- "properties": {
116
- "name": {
117
- "description": "The name of this item. e.g. scf_accuracy",
118
- "type": "string"
119
- }
120
- },
121
- "additionalProperties": true,
122
- "required": [
123
- "name"
124
- ]
125
- },
126
- {
127
- "$schema": "http://json-schema.org/draft-07/schema#",
128
- "title": "RuntimeItemString",
129
- "description": "name of runtime item in shortened notation",
68
+ "title": "runtime item name object schema",
69
+ "description": "A runtime item is a name of a pre-processor, post-processor, monitor, or result for a calculation. Can contain additional properties basename, filetype etc.",
70
+ "type": "object",
71
+ "required": [
72
+ "name"
73
+ ],
74
+ "additionalProperties": true,
75
+ "properties": {
76
+ "name": {
77
+ "description": "The name of this item. e.g. scf_accuracy",
130
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  "type": "string"
131
79
  }
132
- ]
80
+ }
133
81
  }
134
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  },
135
83
  "monitors": {
@@ -137,30 +85,19 @@
137
85
  "type": "array",
138
86
  "items": {
139
87
  "$schema": "http://json-schema.org/draft-07/schema#",
140
- "title": "runtime item schema",
141
- "oneOf": [
142
- {
143
- "$schema": "http://json-schema.org/draft-07/schema#",
144
- "title": "name result schema",
145
- "type": "object",
146
- "properties": {
147
- "name": {
148
- "description": "The name of this item. e.g. scf_accuracy",
149
- "type": "string"
150
- }
151
- },
152
- "additionalProperties": true,
153
- "required": [
154
- "name"
155
- ]
156
- },
157
- {
158
- "$schema": "http://json-schema.org/draft-07/schema#",
159
- "title": "RuntimeItemString",
160
- "description": "name of runtime item in shortened notation",
88
+ "title": "runtime item name object schema",
89
+ "description": "A runtime item is a name of a pre-processor, post-processor, monitor, or result for a calculation. Can contain additional properties basename, filetype etc.",
90
+ "type": "object",
91
+ "required": [
92
+ "name"
93
+ ],
94
+ "additionalProperties": true,
95
+ "properties": {
96
+ "name": {
97
+ "description": "The name of this item. e.g. scf_accuracy",
161
98
  "type": "string"
162
99
  }
163
- ]
100
+ }
164
101
  }
165
102
  },
166
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  "results": {
@@ -168,30 +105,55 @@
168
105
  "type": "array",
169
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  "items": {
170
107
  "$schema": "http://json-schema.org/draft-07/schema#",
171
- "title": "runtime item schema",
172
- "oneOf": [
173
- {
174
- "$schema": "http://json-schema.org/draft-07/schema#",
175
- "title": "name result schema",
176
- "type": "object",
177
- "properties": {
178
- "name": {
179
- "description": "The name of this item. e.g. scf_accuracy",
180
- "type": "string"
181
- }
182
- },
183
- "additionalProperties": true,
184
- "required": [
185
- "name"
186
- ]
108
+ "title": "runtime item name object schema",
109
+ "description": "A runtime item is a name of a pre-processor, post-processor, monitor, or result for a calculation. Can contain additional properties basename, filetype etc.",
110
+ "type": "object",
111
+ "required": [
112
+ "name"
113
+ ],
114
+ "additionalProperties": true,
115
+ "properties": {
116
+ "name": {
117
+ "description": "The name of this item. e.g. scf_accuracy",
118
+ "type": "string"
119
+ }
120
+ }
121
+ }
122
+ },
123
+ "executableName": {
124
+ "description": "name of the executable this flavor belongs to",
125
+ "type": "string"
126
+ },
127
+ "applicationName": {
128
+ "description": "name of the application this flavor belongs to",
129
+ "type": "string"
130
+ },
131
+ "applicationVersion": {
132
+ "description": "version of the application this flavor belongs to",
133
+ "type": "string"
134
+ },
135
+ "input": {
136
+ "title": "execution unit input schema",
137
+ "type": "array",
138
+ "items": {
139
+ "$schema": "http://json-schema.org/draft-07/schema#",
140
+ "title": "execution unit input id item schema for physics-based simulation engines",
141
+ "type": "object",
142
+ "required": [
143
+ "name"
144
+ ],
145
+ "properties": {
146
+ "templateId": {
147
+ "type": "string"
148
+ },
149
+ "templateName": {
150
+ "type": "string"
187
151
  },
188
- {
189
- "$schema": "http://json-schema.org/draft-07/schema#",
190
- "title": "RuntimeItemString",
191
- "description": "name of runtime item in shortened notation",
152
+ "name": {
153
+ "description": "name of the resulting input file, if different than template name",
192
154
  "type": "string"
193
155
  }
194
- ]
156
+ }
195
157
  }
196
158
  }
197
159
  }
@@ -0,0 +1,50 @@
1
+ {
2
+ "$id": "software/flavor-properties",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "flavor properties schema",
5
+ "type": "object",
6
+ "required": [
7
+ "input",
8
+ "executableName",
9
+ "applicationName",
10
+ "applicationVersion"
11
+ ],
12
+ "properties": {
13
+ "executableName": {
14
+ "description": "name of the executable this flavor belongs to",
15
+ "type": "string"
16
+ },
17
+ "applicationName": {
18
+ "description": "name of the application this flavor belongs to",
19
+ "type": "string"
20
+ },
21
+ "applicationVersion": {
22
+ "description": "version of the application this flavor belongs to",
23
+ "type": "string"
24
+ },
25
+ "input": {
26
+ "title": "execution unit input schema",
27
+ "type": "array",
28
+ "items": {
29
+ "$schema": "http://json-schema.org/draft-07/schema#",
30
+ "title": "execution unit input id item schema for physics-based simulation engines",
31
+ "type": "object",
32
+ "required": [
33
+ "name"
34
+ ],
35
+ "properties": {
36
+ "templateId": {
37
+ "type": "string"
38
+ },
39
+ "templateName": {
40
+ "type": "string"
41
+ },
42
+ "name": {
43
+ "description": "name of the resulting input file, if different than template name",
44
+ "type": "string"
45
+ }
46
+ }
47
+ }
48
+ }
49
+ }
50
+ }
@@ -4,67 +4,62 @@
4
4
  "title": "template schema",
5
5
  "type": "object",
6
6
  "required": [
7
+ "applicationName",
8
+ "applicationVersion",
7
9
  "content",
10
+ "contextProviders",
11
+ "executableName",
8
12
  "name"
9
13
  ],
10
14
  "properties": {
11
- "applicationName": {
15
+ "_id": {
16
+ "description": "entity identity",
12
17
  "type": "string"
13
18
  },
14
- "applicationVersion": {
19
+ "slug": {
20
+ "description": "entity slug",
21
+ "type": "string"
22
+ },
23
+ "systemName": {
24
+ "type": "string"
25
+ },
26
+ "schemaVersion": {
27
+ "description": "entity's schema version. Used to distinct between different schemas.",
28
+ "type": "string",
29
+ "default": "2022.8.16"
30
+ },
31
+ "name": {
32
+ "description": "entity name",
15
33
  "type": "string"
16
34
  },
17
35
  "executableName": {
18
36
  "type": "string"
19
37
  },
38
+ "applicationName": {
39
+ "type": "string"
40
+ },
41
+ "applicationVersion": {
42
+ "type": "string"
43
+ },
20
44
  "contextProviders": {
21
45
  "type": "array",
22
46
  "items": {
23
- "$schema": "http://json-schema.org/draft-07/schema#",
24
- "title": "name result schema",
47
+ "description": "render context provider names",
25
48
  "type": "object",
26
49
  "required": [
27
50
  "name"
28
51
  ],
29
- "additionalProperties": true,
30
52
  "properties": {
31
53
  "name": {
32
- "description": "The name of this item. e.g. scf_accuracy",
33
- "type": "string"
54
+ "type": "string",
55
+ "tsType": "ContextProviderNameEnum"
34
56
  }
35
57
  }
36
58
  }
37
59
  },
38
- "isManuallyChanged": {
39
- "type": "boolean"
40
- },
41
- "name": {
42
- "description": "Input file name. e.g. pw_scf.in",
43
- "type": "string"
44
- },
45
60
  "content": {
46
- "description": "Content of the input file. e.g. &CONTROL calculation='scf' ...",
47
- "type": "string"
48
- },
49
- "rendered": {
50
- "description": "Rendered content of the input file. e.g. &CONTROL calculation='scf' ...",
51
- "type": "string"
52
- },
53
- "_id": {
54
- "description": "entity identity",
55
- "type": "string"
56
- },
57
- "slug": {
58
- "description": "entity slug",
59
- "type": "string"
60
- },
61
- "systemName": {
61
+ "description": "Content of the template. e.g. &CONTROL calculation='scf' ...",
62
62
  "type": "string"
63
- },
64
- "schemaVersion": {
65
- "description": "entity's schema version. Used to distinct between different schemas.",
66
- "type": "string",
67
- "default": "2022.8.16"
68
63
  }
69
64
  }
70
65
  }
@@ -0,0 +1,44 @@
1
+ {
2
+ "$id": "software/template-properties",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "template properties schema",
5
+ "type": "object",
6
+ "required": [
7
+ "contextProviders",
8
+ "content",
9
+ "executableName",
10
+ "applicationName",
11
+ "applicationVersion"
12
+ ],
13
+ "properties": {
14
+ "executableName": {
15
+ "type": "string"
16
+ },
17
+ "applicationName": {
18
+ "type": "string"
19
+ },
20
+ "applicationVersion": {
21
+ "type": "string"
22
+ },
23
+ "contextProviders": {
24
+ "type": "array",
25
+ "items": {
26
+ "description": "render context provider names",
27
+ "type": "object",
28
+ "required": [
29
+ "name"
30
+ ],
31
+ "properties": {
32
+ "name": {
33
+ "type": "string",
34
+ "tsType": "ContextProviderNameEnum"
35
+ }
36
+ }
37
+ }
38
+ },
39
+ "content": {
40
+ "description": "Content of the template. e.g. &CONTROL calculation='scf' ...",
41
+ "type": "string"
42
+ }
43
+ }
44
+ }
@@ -3,6 +3,13 @@
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
4
  "title": "DeePMD app schema",
5
5
  "type": "object",
6
+ "required": [
7
+ "build",
8
+ "name",
9
+ "shortName",
10
+ "summary",
11
+ "version"
12
+ ],
6
13
  "properties": {
7
14
  "name": {
8
15
  "enum": [
@@ -32,6 +39,27 @@
32
39
  "python"
33
40
  ]
34
41
  },
42
+ "_id": {
43
+ "description": "entity identity",
44
+ "type": "string"
45
+ },
46
+ "slug": {
47
+ "description": "entity slug",
48
+ "type": "string"
49
+ },
50
+ "systemName": {
51
+ "type": "string"
52
+ },
53
+ "schemaVersion": {
54
+ "description": "entity's schema version. Used to distinct between different schemas.",
55
+ "type": "string",
56
+ "default": "2022.8.16"
57
+ },
58
+ "isDefault": {
59
+ "description": "Identifies that entity is defaultable",
60
+ "type": "boolean",
61
+ "default": false
62
+ },
35
63
  "shortName": {
36
64
  "description": "The short name of the application. e.g. qe",
37
65
  "type": "string"
@@ -40,10 +68,9 @@
40
68
  "description": "Application build. e.g. VTST",
41
69
  "type": "string"
42
70
  },
43
- "isDefault": {
44
- "description": "Whether the build is the default build",
45
- "type": "boolean",
46
- "default": false
71
+ "isDefaultVersion": {
72
+ "description": "Whether the version is the default version",
73
+ "type": "boolean"
47
74
  },
48
75
  "hasAdvancedComputeOptions": {
49
76
  "description": "Whether advanced compute options are present",
@@ -57,21 +84,23 @@
57
84
  "description": "Whether the application is using (being passed during a downstream processing routine) a material structure.",
58
85
  "type": "boolean"
59
86
  },
60
- "_id": {
61
- "description": "entity identity",
62
- "type": "string"
63
- },
64
- "slug": {
65
- "description": "entity slug",
66
- "type": "string"
67
- },
68
- "systemName": {
69
- "type": "string"
70
- },
71
- "schemaVersion": {
72
- "description": "entity's schema version. Used to distinct between different schemas.",
73
- "type": "string",
74
- "default": "2022.8.16"
87
+ "runConfig": {
88
+ "description": "The run configuration of the application",
89
+ "type": "object",
90
+ "required": [
91
+ "commandTemplate",
92
+ "outFileName"
93
+ ],
94
+ "properties": {
95
+ "commandTemplate": {
96
+ "description": "The command template of the application",
97
+ "type": "string"
98
+ },
99
+ "outFileName": {
100
+ "description": "The output file name of the application",
101
+ "type": "string"
102
+ }
103
+ }
75
104
  }
76
105
  }
77
106
  }
@@ -3,6 +3,13 @@
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
4
  "title": "LAMMPS",
5
5
  "type": "object",
6
+ "required": [
7
+ "build",
8
+ "name",
9
+ "shortName",
10
+ "summary",
11
+ "version"
12
+ ],
6
13
  "properties": {
7
14
  "name": {
8
15
  "enum": [
@@ -39,15 +46,35 @@
39
46
  "lmp"
40
47
  ]
41
48
  },
42
- "shortName": {
43
- "description": "The short name of the application. e.g. qe",
49
+ "_id": {
50
+ "description": "entity identity",
51
+ "type": "string"
52
+ },
53
+ "slug": {
54
+ "description": "entity slug",
44
55
  "type": "string"
45
56
  },
57
+ "systemName": {
58
+ "type": "string"
59
+ },
60
+ "schemaVersion": {
61
+ "description": "entity's schema version. Used to distinct between different schemas.",
62
+ "type": "string",
63
+ "default": "2022.8.16"
64
+ },
46
65
  "isDefault": {
47
- "description": "Whether the build is the default build",
66
+ "description": "Identifies that entity is defaultable",
48
67
  "type": "boolean",
49
68
  "default": false
50
69
  },
70
+ "shortName": {
71
+ "description": "The short name of the application. e.g. qe",
72
+ "type": "string"
73
+ },
74
+ "isDefaultVersion": {
75
+ "description": "Whether the version is the default version",
76
+ "type": "boolean"
77
+ },
51
78
  "hasAdvancedComputeOptions": {
52
79
  "description": "Whether advanced compute options are present",
53
80
  "type": "boolean"
@@ -60,21 +87,23 @@
60
87
  "description": "Whether the application is using (being passed during a downstream processing routine) a material structure.",
61
88
  "type": "boolean"
62
89
  },
63
- "_id": {
64
- "description": "entity identity",
65
- "type": "string"
66
- },
67
- "slug": {
68
- "description": "entity slug",
69
- "type": "string"
70
- },
71
- "systemName": {
72
- "type": "string"
73
- },
74
- "schemaVersion": {
75
- "description": "entity's schema version. Used to distinct between different schemas.",
76
- "type": "string",
77
- "default": "2022.8.16"
90
+ "runConfig": {
91
+ "description": "The run configuration of the application",
92
+ "type": "object",
93
+ "required": [
94
+ "commandTemplate",
95
+ "outFileName"
96
+ ],
97
+ "properties": {
98
+ "commandTemplate": {
99
+ "description": "The command template of the application",
100
+ "type": "string"
101
+ },
102
+ "outFileName": {
103
+ "description": "The output file name of the application",
104
+ "type": "string"
105
+ }
106
+ }
78
107
  }
79
108
  }
80
109
  }