@mat3ra/esse 2026.5.18-2 → 2026.5.27-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (383) hide show
  1. package/dist/js/esse/JSONSchemasGenerator.d.ts +2 -1
  2. package/dist/js/esse/JSONSchemasGenerator.js +1 -1
  3. package/dist/js/esse/JSONSchemasInterface.d.ts +1 -1
  4. package/dist/js/esse/JSONSchemasInterface.js +1 -1
  5. package/dist/js/esse/JSONSchemasInterfaceServer.js +3 -2
  6. package/dist/js/esse/schemaUtils.d.ts +1 -1
  7. package/dist/js/esse/schemaUtils.js +2 -1
  8. package/dist/js/esse/server/utils.d.ts +12 -0
  9. package/dist/js/esse/server/utils.js +68 -0
  10. package/dist/js/esse/utils.d.ts +0 -11
  11. package/dist/js/esse/utils.js +3 -60
  12. package/dist/js/example/job.json +38 -11
  13. package/dist/js/example/material.json +7 -1
  14. package/dist/js/example/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +35 -5
  15. package/dist/js/example/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +28 -4
  16. package/dist/js/example/materials_category/defective_structures/two_dimensional/adatom/configuration.json +28 -4
  17. package/dist/js/example/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +35 -5
  18. package/dist/js/example/materials_category/defective_structures/two_dimensional/island/configuration.json +42 -6
  19. package/dist/js/example/materials_category/defective_structures/two_dimensional/terrace/configuration.json +42 -6
  20. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +14 -2
  21. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +14 -2
  22. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +14 -2
  23. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +7 -1
  24. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanoribbon.json +21 -3
  25. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanotape.json +14 -2
  26. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab.json +14 -2
  27. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +14 -2
  28. package/dist/js/example/materials_category/processed_structures/two_dimensional/passivation/configuration.json +28 -4
  29. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +7 -1
  30. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +7 -1
  31. package/dist/js/example/materials_category_components/entities/core/three_dimensional/crystal.json +7 -1
  32. package/dist/js/example/materials_category_components/entities/core/two_dimensional/vacuum.json +7 -1
  33. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +7 -1
  34. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +7 -1
  35. package/dist/js/example/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +28 -4
  36. package/dist/js/example/materials_category_components/operations/core/combinations/merge.json +14 -2
  37. package/dist/js/example/materials_category_components/operations/core/combinations/stack.json +14 -2
  38. package/dist/js/example/materials_category_components/operations/core/modifications/perturb.json +7 -1
  39. package/dist/js/example/model.json +2 -1
  40. package/dist/js/example/software/application.json +1 -0
  41. package/dist/js/example/software/executable.json +3 -4
  42. package/dist/js/example/software/flavor.json +9 -2
  43. package/dist/js/example/software/template.json +5 -8
  44. package/dist/js/example/software_directory/modeling/espresso.json +2 -1
  45. package/dist/js/example/software_directory/modeling/nwchem.json +3 -1
  46. package/dist/js/example/software_directory/modeling/unit/execution.json +57 -15
  47. package/dist/js/example/software_directory/modeling/vasp.json +2 -1
  48. package/dist/js/example/software_directory/scripting/jupyter_lab.json +2 -1
  49. package/dist/js/example/software_directory/scripting/python.json +2 -1
  50. package/dist/js/example/software_directory/scripting/shell.json +2 -1
  51. package/dist/js/example/software_directory/scripting/unit/execution.json +57 -15
  52. package/dist/js/example/system/runtime_items.json +14 -0
  53. package/dist/js/example/workflow/subworkflow.json +32 -10
  54. package/dist/js/example/workflow/unit/assignment.json +5 -1
  55. package/dist/js/example/workflow/unit/condition.json +5 -1
  56. package/dist/js/example/workflow/unit/execution.json +29 -9
  57. package/dist/js/example/workflow/unit/io/api.json +1 -0
  58. package/dist/js/example/workflow/unit/io/db_collection.json +5 -0
  59. package/dist/js/example/workflow/unit/io/db_ids.json +6 -0
  60. package/dist/js/example/workflow/unit/io/object_storage.json +2 -1
  61. package/dist/js/example/workflow/unit/io.json +22 -2
  62. package/dist/js/example/workflow/unit/map.json +5 -1
  63. package/dist/js/example/workflow/unit/reduce.json +5 -1
  64. package/dist/js/example/workflow.json +38 -11
  65. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +5 -0
  66. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x.json +5 -0
  67. package/dist/js/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  68. package/dist/js/schema/context_providers_directory/by_application/qe_neb_context_provider.json +164 -6
  69. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_base_context_provider.json +10 -0
  70. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +17 -1
  71. package/dist/js/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  72. package/dist/js/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  73. package/dist/js/schema/context_providers_directory/collinear_magnetization_context_provider.json +14 -0
  74. package/dist/js/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  75. package/dist/js/schema/context_providers_directory/points_grid_data_provider.json +23 -6
  76. package/dist/js/schema/context_providers_directory/points_path_data_provider.json +6 -2
  77. package/dist/js/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  78. package/dist/js/schema/core/primitive/linked_list/named_node.json +2 -1
  79. package/dist/js/schema/core/primitive/linked_list/named_node_in_group.json +2 -1
  80. package/dist/js/schema/core/primitive/linked_list.json +4 -2
  81. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +3 -0
  82. package/dist/js/schema/in_memory_entity/named.json +3 -0
  83. package/dist/js/schema/in_memory_entity/named_defaultable.json +3 -0
  84. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +3 -0
  85. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +3 -0
  86. package/dist/js/schema/job/base.json +133 -132
  87. package/dist/js/schema/job/compute.json +1 -1
  88. package/dist/js/schema/job/compute_property.json +182 -0
  89. package/dist/js/schema/job.json +3829 -4566
  90. package/dist/js/schema/material/material_properties.json +736 -0
  91. package/dist/js/schema/material/metadata/boundary_conditions.json +32 -0
  92. package/dist/js/schema/material/metadata/bulk_properties.json +13 -0
  93. package/dist/js/schema/material/metadata/slab_properties.json +41 -0
  94. package/dist/js/schema/material/metadata.json +101 -0
  95. package/dist/js/schema/material.json +117 -27
  96. package/dist/js/schema/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +1069 -268
  97. package/dist/js/schema/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +1069 -268
  98. package/dist/js/schema/materials_category/defective_structures/two_dimensional/adatom/configuration.json +464 -108
  99. package/dist/js/schema/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +1069 -268
  100. package/dist/js/schema/materials_category/defective_structures/two_dimensional/island/configuration.json +698 -164
  101. package/dist/js/schema/materials_category/defective_structures/two_dimensional/terrace/configuration.json +698 -164
  102. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +116 -27
  103. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +232 -54
  104. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +232 -54
  105. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +116 -27
  106. package/dist/js/schema/materials_category/pristine_structures/three_dimensional/ideal_crystal.json +116 -27
  107. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanoribbon.json +348 -81
  108. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanotape.json +232 -54
  109. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab.json +232 -54
  110. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +232 -54
  111. package/dist/js/schema/materials_category/processed_structures/two_dimensional/passivation/configuration.json +233 -54
  112. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +116 -27
  113. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +116 -27
  114. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/void_region.json +116 -27
  115. package/dist/js/schema/materials_category_components/entities/core/three_dimensional/crystal.json +116 -27
  116. package/dist/js/schema/materials_category_components/entities/core/two_dimensional/vacuum.json +116 -27
  117. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +116 -27
  118. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +116 -27
  119. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.json +116 -27
  120. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.json +116 -27
  121. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_uniform.json +116 -27
  122. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/supercell.json +116 -27
  123. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers.json +116 -27
  124. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.json +116 -27
  125. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.json +116 -27
  126. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.json +116 -27
  127. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +348 -81
  128. package/dist/js/schema/materials_category_components/operations/core/modifications/perturb.json +117 -27
  129. package/dist/js/schema/method/categorized_method.json +4 -0
  130. package/dist/js/schema/method/unit_method.json +3 -0
  131. package/dist/js/schema/method.json +7 -1
  132. package/dist/js/schema/methods_directory/legacy/localorbital.json +7 -1
  133. package/dist/js/schema/methods_directory/legacy/pseudopotential.json +7 -1
  134. package/dist/js/schema/methods_directory/legacy/regression.json +4 -0
  135. package/dist/js/schema/methods_directory/legacy/unknown.json +7 -1
  136. package/dist/js/schema/methods_directory/mathematical/cg.json +2 -1
  137. package/dist/js/schema/methods_directory/mathematical/davidson.json +2 -1
  138. package/dist/js/schema/methods_directory/mathematical/regression.json +3 -2
  139. package/dist/js/schema/methods_directory/physical/ao/dunning.json +2 -1
  140. package/dist/js/schema/methods_directory/physical/ao/other.json +2 -1
  141. package/dist/js/schema/methods_directory/physical/ao/pople.json +2 -1
  142. package/dist/js/schema/methods_directory/physical/psp.json +2 -1
  143. package/dist/js/schema/methods_directory/physical/pw.json +2 -1
  144. package/dist/js/schema/methods_directory/physical/smearing.json +2 -1
  145. package/dist/js/schema/methods_directory/physical/tetrahedron.json +2 -1
  146. package/dist/js/schema/model/categorized_model.json +5 -0
  147. package/dist/js/schema/model/model_without_method.json +1 -0
  148. package/dist/js/schema/model.json +7 -2
  149. package/dist/js/schema/models_directory/double_hybrid.json +1 -0
  150. package/dist/js/schema/models_directory/gga.json +1 -0
  151. package/dist/js/schema/models_directory/gw.json +1 -0
  152. package/dist/js/schema/models_directory/hybrid.json +1 -0
  153. package/dist/js/schema/models_directory/lda.json +1 -0
  154. package/dist/js/schema/models_directory/legacy/any.json +488 -0
  155. package/dist/js/schema/models_directory/legacy/dft.json +267 -39
  156. package/dist/js/schema/models_directory/legacy/ml.json +10 -9
  157. package/dist/js/schema/models_directory/legacy/unknown.json +10 -9
  158. package/dist/js/schema/models_directory/mgga.json +1 -0
  159. package/dist/js/schema/models_directory/re.json +1 -0
  160. package/dist/js/schema/project.json +3 -0
  161. package/dist/js/schema/properties_directory/non_scalar/workflow.json +3682 -4421
  162. package/dist/js/schema/property/holder.json +3717 -4456
  163. package/dist/js/schema/software/application.json +53 -24
  164. package/dist/js/schema/software/application_properties.json +68 -0
  165. package/dist/js/schema/software/application_with_build_config.json +52 -23
  166. package/dist/js/schema/software/executable.json +67 -108
  167. package/dist/js/schema/software/executable_properties.json +24 -0
  168. package/dist/js/schema/software/flavor.json +90 -128
  169. package/dist/js/schema/software/flavor_properties.json +50 -0
  170. package/dist/js/schema/software/template.json +30 -35
  171. package/dist/js/schema/software/template_properties.json +44 -0
  172. package/dist/js/schema/software_directory/modeling/deepmd.json +48 -19
  173. package/dist/js/schema/software_directory/modeling/lammps.json +47 -18
  174. package/dist/js/schema/software_directory/modeling/nwchem.json +48 -19
  175. package/dist/js/schema/software_directory/modeling/unit/execution.json +2019 -455
  176. package/dist/js/schema/software_directory/modeling/vasp.json +48 -19
  177. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +48 -19
  178. package/dist/js/schema/software_directory/scripting/python.json +48 -19
  179. package/dist/js/schema/software_directory/scripting/shell.json +48 -19
  180. package/dist/js/schema/software_directory/scripting/unit/execution.json +2019 -455
  181. package/dist/js/schema/system/bankable.json +4 -0
  182. package/dist/js/schema/system/creator.json +2 -1
  183. package/dist/js/schema/system/creator_account.json +3 -0
  184. package/dist/js/schema/system/in_set.json +3 -0
  185. package/dist/js/schema/system/name.json +3 -0
  186. package/dist/js/schema/system/owner.json +2 -1
  187. package/dist/js/schema/system/path_entity.json +3 -0
  188. package/dist/js/schema/system/runtime_item.json +17 -0
  189. package/dist/js/schema/system/runtime_items.json +94 -0
  190. package/dist/js/schema/workflow/base.json +4591 -39
  191. package/dist/js/schema/workflow/base_flow.json +1 -1
  192. package/dist/js/schema/workflow/subworkflow/mixin.json +3919 -0
  193. package/dist/js/schema/workflow/subworkflow/unit.json +2365 -1560
  194. package/dist/js/schema/workflow/subworkflow.json +3137 -1852
  195. package/dist/js/schema/workflow/unit/assertion.json +96 -140
  196. package/dist/js/schema/workflow/unit/assignment.json +129 -173
  197. package/dist/js/schema/workflow/unit/base.json +90 -133
  198. package/dist/js/schema/workflow/unit/condition.json +132 -175
  199. package/dist/js/schema/workflow/unit/context/_base.json +20 -0
  200. package/dist/js/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  201. package/dist/js/schema/workflow/unit/context/item/boundaryConditions.json +63 -0
  202. package/dist/js/schema/workflow/unit/context/item/collinearMagnetization.json +82 -0
  203. package/dist/js/schema/workflow/unit/context/item/cutoffs.json +38 -0
  204. package/dist/js/schema/workflow/unit/context/item/dynamics.json +48 -0
  205. package/dist/js/schema/workflow/unit/context/item/grid.json +100 -0
  206. package/dist/js/schema/workflow/unit/context/item/hubbard_j.json +59 -0
  207. package/dist/js/schema/workflow/unit/context/item/hubbard_legacy.json +49 -0
  208. package/dist/js/schema/workflow/unit/context/item/hubbard_u.json +57 -0
  209. package/dist/js/schema/workflow/unit/context/item/hubbard_v.json +64 -0
  210. package/dist/js/schema/workflow/unit/context/item/input.json +712 -0
  211. package/dist/js/schema/workflow/unit/context/item/mlSettings.json +43 -0
  212. package/dist/js/schema/workflow/unit/context/item/mlTrainTestSplit.json +37 -0
  213. package/dist/js/schema/workflow/unit/context/item/neb.json +35 -0
  214. package/dist/js/schema/workflow/unit/context/item/nonCollinearMagnetization.json +150 -0
  215. package/dist/js/schema/workflow/unit/context/item/path.json +62 -0
  216. package/dist/js/schema/workflow/unit/context/item.json +1594 -0
  217. package/dist/js/schema/workflow/unit/execution.json +1928 -423
  218. package/dist/js/schema/workflow/unit/input/_input.json +74 -12
  219. package/dist/js/schema/workflow/unit/input/_inputItem.json +70 -10
  220. package/dist/js/schema/workflow/unit/input/_inputItemId.json +3 -1
  221. package/dist/js/schema/workflow/unit/io/api.json +5 -1
  222. package/dist/js/schema/workflow/unit/io/db_collection.json +24 -0
  223. package/dist/js/schema/workflow/unit/io/db_ids.json +22 -0
  224. package/dist/js/schema/workflow/unit/io/object_storage.json +5 -1
  225. package/dist/js/schema/workflow/unit/io.json +182 -253
  226. package/dist/js/schema/workflow/unit/map.json +134 -177
  227. package/dist/js/schema/workflow/unit/mixins/assertion.json +23 -0
  228. package/dist/js/schema/workflow/unit/mixins/assignment.json +57 -0
  229. package/dist/js/schema/workflow/unit/mixins/base.json +50 -0
  230. package/dist/js/schema/workflow/unit/mixins/condition.json +61 -0
  231. package/dist/js/schema/workflow/unit/mixins/execution.json +1998 -0
  232. package/dist/js/schema/workflow/unit/mixins/io.json +131 -0
  233. package/dist/js/schema/workflow/unit/mixins/map.json +60 -0
  234. package/dist/js/schema/workflow/unit/mixins/processing.json +27 -0
  235. package/dist/js/schema/workflow/unit/mixins/reduce.json +43 -0
  236. package/dist/js/schema/workflow/unit/mixins/subworkflow.json +11 -0
  237. package/dist/js/schema/workflow/unit/reduce.json +117 -160
  238. package/dist/js/schema/workflow/unit/subworkflow.json +91 -134
  239. package/dist/js/schema/workflow/unit.json +285 -2477
  240. package/dist/js/schema/workflow.json +3684 -4422
  241. package/dist/js/schemas.json +1 -1
  242. package/dist/js/scripts/compileTs.js +1 -1
  243. package/dist/js/scripts/setSchemaIds.js +2 -1
  244. package/dist/js/types.d.ts +27163 -15301
  245. package/dist/js/types.js +5 -5
  246. package/dist/js/utils/ajv.js +5 -4
  247. package/dist/js/utils/common.js +3 -2
  248. package/dist/js/utils/filesystem.js +3 -2
  249. package/example/material.json +7 -1
  250. package/example/model.json +2 -1
  251. package/example/software/application.json +1 -0
  252. package/example/software/executable.json +3 -4
  253. package/example/software/flavor.json +9 -2
  254. package/example/software/template.json +5 -8
  255. package/example/software_directory/modeling/espresso.json +2 -1
  256. package/example/software_directory/modeling/nwchem.json +4 -2
  257. package/example/software_directory/modeling/unit/execution.json +17 -2
  258. package/example/software_directory/modeling/vasp.json +2 -1
  259. package/example/software_directory/scripting/jupyter-lab.json +2 -1
  260. package/example/software_directory/scripting/python.json +2 -1
  261. package/example/software_directory/scripting/shell.json +2 -1
  262. package/example/software_directory/scripting/unit/execution.json +17 -2
  263. package/example/system/runtime_items.json +14 -0
  264. package/example/workflow/unit/assignment.json +5 -1
  265. package/example/workflow/unit/condition.json +5 -1
  266. package/example/workflow/unit/execution.json +7 -3
  267. package/example/workflow/unit/io/api.json +1 -0
  268. package/example/workflow/unit/io/db_collection.json +5 -0
  269. package/example/workflow/unit/io/db_ids.json +6 -0
  270. package/example/workflow/unit/io/object_storage.json +2 -1
  271. package/example/workflow/unit/io.json +9 -29
  272. package/example/workflow/unit/map.json +5 -1
  273. package/example/workflow/unit/reduce.json +5 -1
  274. package/example/workflow.json +6 -1
  275. package/package.json +2 -1
  276. package/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +6 -1
  277. package/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  278. package/schema/context_providers_directory/by_application/qe_neb_context_provider.json +12 -6
  279. package/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +10 -1
  280. package/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  281. package/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  282. package/schema/context_providers_directory/collinear_magnetization_context_provider.json +18 -4
  283. package/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  284. package/schema/context_providers_directory/points_grid_data_provider.json +24 -7
  285. package/schema/context_providers_directory/points_path_data_provider.json +7 -3
  286. package/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  287. package/schema/job/base.json +4 -5
  288. package/schema/job/compute.json +1 -1
  289. package/schema/job/compute_property.json +15 -0
  290. package/schema/material/material_properties.json +65 -0
  291. package/schema/material/metadata/boundary_conditions.json +24 -0
  292. package/schema/material/metadata/bulk_properties.json +13 -0
  293. package/schema/material/metadata/slab_properties.json +41 -0
  294. package/schema/material/metadata.json +27 -0
  295. package/schema/material.json +5 -57
  296. package/schema/method.json +7 -1
  297. package/schema/model.json +0 -1
  298. package/schema/models_directory/legacy/any.json +20 -0
  299. package/schema/models_directory/legacy/dft.json +63 -12
  300. package/schema/models_directory/legacy/ml.json +10 -7
  301. package/schema/models_directory/legacy/unknown.json +10 -7
  302. package/schema/software/application.json +4 -35
  303. package/schema/software/application_properties.json +68 -0
  304. package/schema/software/executable.json +5 -23
  305. package/schema/software/executable_properties.json +24 -0
  306. package/schema/software/flavor.json +6 -28
  307. package/schema/software/flavor_properties.json +33 -0
  308. package/schema/software/template.json +2 -26
  309. package/schema/software/template_properties.json +44 -0
  310. package/schema/system/bankable.json +5 -1
  311. package/schema/system/creator.json +4 -1
  312. package/schema/system/creator_account.json +4 -1
  313. package/schema/system/in_set.json +4 -1
  314. package/schema/system/name.json +4 -1
  315. package/schema/system/owner.json +4 -1
  316. package/schema/system/runtime_item.json +17 -0
  317. package/schema/system/runtime_items.json +42 -0
  318. package/schema/workflow/base.json +17 -17
  319. package/schema/workflow/subworkflow/mixin.json +48 -0
  320. package/schema/workflow/subworkflow/unit.json +0 -6
  321. package/schema/workflow/subworkflow.json +4 -31
  322. package/schema/workflow/unit/assertion.json +2 -16
  323. package/schema/workflow/unit/assignment.json +2 -34
  324. package/schema/workflow/unit/base.json +6 -51
  325. package/schema/workflow/unit/condition.json +2 -38
  326. package/schema/workflow/unit/context/_base.json +20 -0
  327. package/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  328. package/schema/workflow/unit/context/item/boundaryConditions.json +27 -0
  329. package/schema/workflow/unit/context/item/collinearMagnetization.json +27 -0
  330. package/schema/workflow/unit/context/item/cutoffs.json +20 -0
  331. package/schema/workflow/unit/context/item/dynamics.json +20 -0
  332. package/schema/workflow/unit/context/item/grid.json +31 -0
  333. package/schema/workflow/unit/context/item/hubbard_j.json +20 -0
  334. package/schema/workflow/unit/context/item/hubbard_legacy.json +20 -0
  335. package/schema/workflow/unit/context/item/hubbard_u.json +27 -0
  336. package/schema/workflow/unit/context/item/hubbard_v.json +20 -0
  337. package/schema/workflow/unit/context/item/input.json +47 -0
  338. package/schema/workflow/unit/context/item/mlSettings.json +20 -0
  339. package/schema/workflow/unit/context/item/mlTrainTestSplit.json +20 -0
  340. package/schema/workflow/unit/context/item/neb.json +20 -0
  341. package/schema/workflow/unit/context/item/nonCollinearMagnetization.json +27 -0
  342. package/schema/workflow/unit/context/item/path.json +33 -0
  343. package/schema/workflow/unit/context/item.json +55 -0
  344. package/schema/workflow/unit/execution.json +4 -25
  345. package/schema/workflow/unit/input/_input.json +1 -1
  346. package/schema/workflow/unit/input/_inputItem.json +9 -9
  347. package/schema/workflow/unit/input/_inputItemId.json +3 -1
  348. package/schema/workflow/unit/io/api.json +6 -2
  349. package/schema/workflow/unit/io/db_collection.json +24 -0
  350. package/schema/workflow/unit/io/db_ids.json +22 -0
  351. package/schema/workflow/unit/io/object_storage.json +6 -2
  352. package/schema/workflow/unit/io.json +2 -39
  353. package/schema/workflow/unit/map.json +2 -53
  354. package/schema/workflow/unit/mixins/assertion.json +23 -0
  355. package/schema/workflow/unit/mixins/assignment.json +42 -0
  356. package/schema/workflow/unit/mixins/base.json +50 -0
  357. package/schema/workflow/unit/mixins/condition.json +46 -0
  358. package/schema/workflow/unit/mixins/execution.json +49 -0
  359. package/schema/workflow/unit/mixins/io.json +46 -0
  360. package/schema/workflow/unit/mixins/map.json +61 -0
  361. package/schema/workflow/unit/{processing.json → mixins/processing.json} +3 -7
  362. package/schema/workflow/unit/mixins/reduce.json +44 -0
  363. package/schema/workflow/unit/mixins/subworkflow.json +12 -0
  364. package/schema/workflow/unit/reduce.json +2 -36
  365. package/schema/workflow/unit/subworkflow.json +4 -6
  366. package/schema/workflow/unit.json +1 -19
  367. package/schema/workflow.json +19 -15
  368. package/src/html/index.html +2 -1
  369. package/src/js/esse/JSONSchemasGenerator.ts +2 -1
  370. package/src/js/esse/JSONSchemasInterface.ts +1 -1
  371. package/src/js/esse/schemaUtils.ts +1 -1
  372. package/src/js/esse/server/utils.ts +82 -0
  373. package/src/js/esse/utils.ts +0 -74
  374. package/src/js/scripts/compileTs.ts +1 -1
  375. package/src/js/scripts/setSchemaIds.ts +1 -0
  376. package/src/js/utils/ajv.ts +1 -1
  377. package/dist/js/example/workflow/unit/io/db.json +0 -15
  378. package/dist/js/example/workflow/unit/processing.json +0 -13
  379. package/dist/js/schema/workflow/unit/io/db.json +0 -40
  380. package/dist/js/schema/workflow/unit/processing.json +0 -242
  381. package/example/workflow/unit/io/db.json +0 -15
  382. package/example/workflow/unit/processing.json +0 -13
  383. package/schema/workflow/unit/io/db.json +0 -40
@@ -1,11 +1,20 @@
1
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  {
2
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  "$id": "models-directory/legacy/dft",
3
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  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "legacy model density functional theory",
4
+ "title": "DFT model schema",
5
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  "type": "object",
6
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  "definitions": {
7
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  "lda": {
8
+ "required": [
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+ "type",
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+ "subtype",
11
+ "functional",
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+ "method"
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+ ],
8
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  "properties": {
15
+ "type": {
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+ "const": "dft"
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+ },
9
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  "subtype": {
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  "const": "lda"
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20
  },
@@ -16,11 +25,53 @@
16
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  "vwn",
17
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  "other"
18
27
  ]
28
+ },
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+ "method": {
30
+ "$schema": "http://json-schema.org/draft-07/schema#",
31
+ "title": "base method",
32
+ "type": "object",
33
+ "required": [
34
+ "type",
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+ "subtype"
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+ ],
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+ "properties": {
38
+ "type": {
39
+ "description": "general type of this method, eg. `pseudopotential`",
40
+ "type": "string"
41
+ },
42
+ "subtype": {
43
+ "description": "general subtype of this method, eg. `ultra-soft`",
44
+ "type": "string"
45
+ },
46
+ "precision": {
47
+ "description": "Object showing the actual possible precision based on theory and implementation",
48
+ "type": "object"
49
+ },
50
+ "data": {
51
+ "description": "additional data specific to method, eg. array of pseudopotentials",
52
+ "type": "object",
53
+ "additionalProperties": true,
54
+ "properties": {
55
+ "searchText": {
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+ "type": "string"
57
+ }
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+ }
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+ }
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+ }
19
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  }
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  }
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  },
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  "gga": {
65
+ "required": [
66
+ "type",
67
+ "subtype",
68
+ "functional",
69
+ "method"
70
+ ],
23
71
  "properties": {
72
+ "type": {
73
+ "const": "dft"
74
+ },
24
75
  "subtype": {
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76
  "const": "gga"
26
77
  },
@@ -31,11 +82,53 @@
31
82
  "pw91",
32
83
  "other"
33
84
  ]
85
+ },
86
+ "method": {
87
+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "base method",
89
+ "type": "object",
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+ "required": [
91
+ "type",
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+ "subtype"
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+ ],
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+ "properties": {
95
+ "type": {
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+ "description": "general type of this method, eg. `pseudopotential`",
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+ "type": "string"
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+ },
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+ "subtype": {
100
+ "description": "general subtype of this method, eg. `ultra-soft`",
101
+ "type": "string"
102
+ },
103
+ "precision": {
104
+ "description": "Object showing the actual possible precision based on theory and implementation",
105
+ "type": "object"
106
+ },
107
+ "data": {
108
+ "description": "additional data specific to method, eg. array of pseudopotentials",
109
+ "type": "object",
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+ "additionalProperties": true,
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+ "properties": {
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+ "searchText": {
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+ "type": "string"
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+ }
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+ }
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+ }
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+ }
34
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  }
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119
  }
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  },
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  "hybrid": {
122
+ "required": [
123
+ "type",
124
+ "subtype",
125
+ "functional",
126
+ "method"
127
+ ],
38
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  "properties": {
129
+ "type": {
130
+ "const": "dft"
131
+ },
39
132
  "subtype": {
40
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  "const": "hybrid"
41
134
  },
@@ -44,18 +137,49 @@
44
137
  "b3lyp",
45
138
  "hse06"
46
139
  ]
140
+ },
141
+ "method": {
142
+ "$schema": "http://json-schema.org/draft-07/schema#",
143
+ "title": "base method",
144
+ "type": "object",
145
+ "required": [
146
+ "type",
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+ "subtype"
148
+ ],
149
+ "properties": {
150
+ "type": {
151
+ "description": "general type of this method, eg. `pseudopotential`",
152
+ "type": "string"
153
+ },
154
+ "subtype": {
155
+ "description": "general subtype of this method, eg. `ultra-soft`",
156
+ "type": "string"
157
+ },
158
+ "precision": {
159
+ "description": "Object showing the actual possible precision based on theory and implementation",
160
+ "type": "object"
161
+ },
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+ "data": {
163
+ "description": "additional data specific to method, eg. array of pseudopotentials",
164
+ "type": "object",
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+ "additionalProperties": true,
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+ "properties": {
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+ "searchText": {
168
+ "type": "string"
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+ }
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+ }
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+ }
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+ }
47
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  }
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  }
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  }
50
176
  },
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- "required": [
52
- "type",
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- "subtype",
54
- "method"
55
- ],
56
177
  "oneOf": [
57
178
  {
58
179
  "properties": {
180
+ "type": {
181
+ "const": "dft"
182
+ },
59
183
  "subtype": {
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  "const": "lda"
61
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  },
@@ -66,11 +190,53 @@
66
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  "vwn",
67
191
  "other"
68
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  ]
193
+ },
194
+ "method": {
195
+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "base method",
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+ "type": "object",
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+ "required": [
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+ "type",
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+ "subtype"
201
+ ],
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+ "properties": {
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+ "type": {
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+ "description": "general type of this method, eg. `pseudopotential`",
205
+ "type": "string"
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+ },
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+ "subtype": {
208
+ "description": "general subtype of this method, eg. `ultra-soft`",
209
+ "type": "string"
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+ },
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+ "precision": {
212
+ "description": "Object showing the actual possible precision based on theory and implementation",
213
+ "type": "object"
214
+ },
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+ "data": {
216
+ "description": "additional data specific to method, eg. array of pseudopotentials",
217
+ "type": "object",
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+ "additionalProperties": true,
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+ "properties": {
220
+ "searchText": {
221
+ "type": "string"
222
+ }
223
+ }
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+ }
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+ }
69
226
  }
70
- }
227
+ },
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+ "required": [
229
+ "type",
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+ "subtype",
231
+ "functional",
232
+ "method"
233
+ ]
71
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  },
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  {
73
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  "properties": {
237
+ "type": {
238
+ "const": "dft"
239
+ },
74
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  "subtype": {
75
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  "const": "gga"
76
242
  },
@@ -81,11 +247,53 @@
81
247
  "pw91",
82
248
  "other"
83
249
  ]
250
+ },
251
+ "method": {
252
+ "$schema": "http://json-schema.org/draft-07/schema#",
253
+ "title": "base method",
254
+ "type": "object",
255
+ "required": [
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+ "type",
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+ "subtype"
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+ ],
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+ "properties": {
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+ "type": {
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+ "description": "general type of this method, eg. `pseudopotential`",
262
+ "type": "string"
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+ },
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+ "subtype": {
265
+ "description": "general subtype of this method, eg. `ultra-soft`",
266
+ "type": "string"
267
+ },
268
+ "precision": {
269
+ "description": "Object showing the actual possible precision based on theory and implementation",
270
+ "type": "object"
271
+ },
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+ "data": {
273
+ "description": "additional data specific to method, eg. array of pseudopotentials",
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+ "type": "object",
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+ "additionalProperties": true,
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+ "properties": {
277
+ "searchText": {
278
+ "type": "string"
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+ }
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+ }
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+ }
282
+ }
84
283
  }
85
- }
284
+ },
285
+ "required": [
286
+ "type",
287
+ "subtype",
288
+ "functional",
289
+ "method"
290
+ ]
86
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  },
87
292
  {
88
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  "properties": {
294
+ "type": {
295
+ "const": "dft"
296
+ },
89
297
  "subtype": {
90
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  "const": "hybrid"
91
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  },
@@ -94,47 +302,67 @@
94
302
  "b3lyp",
95
303
  "hse06"
96
304
  ]
305
+ },
306
+ "method": {
307
+ "$schema": "http://json-schema.org/draft-07/schema#",
308
+ "title": "base method",
309
+ "type": "object",
310
+ "required": [
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+ "type",
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+ "subtype"
313
+ ],
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+ "properties": {
315
+ "type": {
316
+ "description": "general type of this method, eg. `pseudopotential`",
317
+ "type": "string"
318
+ },
319
+ "subtype": {
320
+ "description": "general subtype of this method, eg. `ultra-soft`",
321
+ "type": "string"
322
+ },
323
+ "precision": {
324
+ "description": "Object showing the actual possible precision based on theory and implementation",
325
+ "type": "object"
326
+ },
327
+ "data": {
328
+ "description": "additional data specific to method, eg. array of pseudopotentials",
329
+ "type": "object",
330
+ "additionalProperties": true,
331
+ "properties": {
332
+ "searchText": {
333
+ "type": "string"
334
+ }
335
+ }
336
+ }
337
+ }
97
338
  }
98
- }
339
+ },
340
+ "required": [
341
+ "type",
342
+ "subtype",
343
+ "functional",
344
+ "method"
345
+ ]
99
346
  }
100
347
  ],
101
- "additionalProperties": true,
348
+ "discriminator": {
349
+ "propertyName": "subtype"
350
+ },
351
+ "required": [
352
+ "type"
353
+ ],
102
354
  "properties": {
103
355
  "type": {
104
- "const": "dft",
105
- "description": "general type of the model, eg. `dft`",
106
- "type": "string"
356
+ "const": "dft"
107
357
  },
108
358
  "subtype": {
109
- "description": "general subtype of the model, eg. `lda`",
359
+ "type": "string"
360
+ },
361
+ "functional": {
110
362
  "type": "string"
111
363
  },
112
364
  "method": {
113
- "$schema": "http://json-schema.org/draft-07/schema#",
114
- "title": "base method",
115
- "type": "object",
116
- "required": [
117
- "type",
118
- "subtype"
119
- ],
120
- "properties": {
121
- "type": {
122
- "description": "general type of this method, eg. `pseudopotential`",
123
- "type": "string"
124
- },
125
- "subtype": {
126
- "description": "general subtype of this method, eg. `ultra-soft`",
127
- "type": "string"
128
- },
129
- "precision": {
130
- "description": "Object showing the actual possible precision based on theory and implementation",
131
- "type": "object"
132
- },
133
- "data": {
134
- "description": "additional data specific to method, eg. array of pseudopotentials",
135
- "type": "object"
136
- }
137
- }
365
+ "type": "object"
138
366
  }
139
367
  }
140
368
  }
@@ -1,28 +1,23 @@
1
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  {
2
2
  "$id": "models-directory/legacy/ml",
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "legacy model regression",
4
+ "title": "ML model schema",
5
5
  "type": "object",
6
6
  "required": [
7
7
  "type",
8
8
  "subtype",
9
9
  "method"
10
10
  ],
11
- "additionalProperties": true,
12
11
  "properties": {
13
12
  "type": {
14
13
  "enum": [
15
14
  "ml"
16
- ],
17
- "description": "general type of the model, eg. `dft`",
18
- "type": "string"
15
+ ]
19
16
  },
20
17
  "subtype": {
21
18
  "enum": [
22
19
  "re"
23
- ],
24
- "description": "general subtype of the model, eg. `lda`",
25
- "type": "string"
20
+ ]
26
21
  },
27
22
  "method": {
28
23
  "$schema": "http://json-schema.org/draft-07/schema#",
@@ -47,7 +42,13 @@
47
42
  },
48
43
  "data": {
49
44
  "description": "additional data specific to method, eg. array of pseudopotentials",
50
- "type": "object"
45
+ "type": "object",
46
+ "additionalProperties": true,
47
+ "properties": {
48
+ "searchText": {
49
+ "type": "string"
50
+ }
51
+ }
51
52
  }
52
53
  }
53
54
  }
@@ -1,28 +1,23 @@
1
1
  {
2
2
  "$id": "models-directory/legacy/unknown",
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "legacy model unknown",
4
+ "title": "Unknown model schema",
5
5
  "type": "object",
6
6
  "required": [
7
7
  "type",
8
8
  "subtype",
9
9
  "method"
10
10
  ],
11
- "additionalProperties": true,
12
11
  "properties": {
13
12
  "type": {
14
13
  "enum": [
15
14
  "unknown"
16
- ],
17
- "description": "general type of the model, eg. `dft`",
18
- "type": "string"
15
+ ]
19
16
  },
20
17
  "subtype": {
21
18
  "enum": [
22
19
  "unknown"
23
- ],
24
- "description": "general subtype of the model, eg. `lda`",
25
- "type": "string"
20
+ ]
26
21
  },
27
22
  "method": {
28
23
  "$schema": "http://json-schema.org/draft-07/schema#",
@@ -47,7 +42,13 @@
47
42
  },
48
43
  "data": {
49
44
  "description": "additional data specific to method, eg. array of pseudopotentials",
50
- "type": "object"
45
+ "type": "object",
46
+ "additionalProperties": true,
47
+ "properties": {
48
+ "searchText": {
49
+ "type": "string"
50
+ }
51
+ }
51
52
  }
52
53
  }
53
54
  }
@@ -5,6 +5,7 @@
5
5
  "type": "object",
6
6
  "required": [
7
7
  "categories",
8
+ "name",
8
9
  "parameters"
9
10
  ],
10
11
  "properties": {
@@ -6,6 +6,7 @@
6
6
  "type": "object",
7
7
  "required": [
8
8
  "categories",
9
+ "name",
9
10
  "parameters"
10
11
  ],
11
12
  "properties": {
@@ -3,6 +3,9 @@
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
4
  "title": "project schema",
5
5
  "type": "object",
6
+ "required": [
7
+ "name"
8
+ ],
6
9
  "properties": {
7
10
  "gid": {
8
11
  "description": "project GID",