@mat3ra/esse 2026.5.18-2 → 2026.5.27-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (383) hide show
  1. package/dist/js/esse/JSONSchemasGenerator.d.ts +2 -1
  2. package/dist/js/esse/JSONSchemasGenerator.js +1 -1
  3. package/dist/js/esse/JSONSchemasInterface.d.ts +1 -1
  4. package/dist/js/esse/JSONSchemasInterface.js +1 -1
  5. package/dist/js/esse/JSONSchemasInterfaceServer.js +3 -2
  6. package/dist/js/esse/schemaUtils.d.ts +1 -1
  7. package/dist/js/esse/schemaUtils.js +2 -1
  8. package/dist/js/esse/server/utils.d.ts +12 -0
  9. package/dist/js/esse/server/utils.js +68 -0
  10. package/dist/js/esse/utils.d.ts +0 -11
  11. package/dist/js/esse/utils.js +3 -60
  12. package/dist/js/example/job.json +38 -11
  13. package/dist/js/example/material.json +7 -1
  14. package/dist/js/example/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +35 -5
  15. package/dist/js/example/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +28 -4
  16. package/dist/js/example/materials_category/defective_structures/two_dimensional/adatom/configuration.json +28 -4
  17. package/dist/js/example/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +35 -5
  18. package/dist/js/example/materials_category/defective_structures/two_dimensional/island/configuration.json +42 -6
  19. package/dist/js/example/materials_category/defective_structures/two_dimensional/terrace/configuration.json +42 -6
  20. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +14 -2
  21. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +14 -2
  22. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +14 -2
  23. package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +7 -1
  24. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanoribbon.json +21 -3
  25. package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanotape.json +14 -2
  26. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab.json +14 -2
  27. package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +14 -2
  28. package/dist/js/example/materials_category/processed_structures/two_dimensional/passivation/configuration.json +28 -4
  29. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +7 -1
  30. package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +7 -1
  31. package/dist/js/example/materials_category_components/entities/core/three_dimensional/crystal.json +7 -1
  32. package/dist/js/example/materials_category_components/entities/core/two_dimensional/vacuum.json +7 -1
  33. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +7 -1
  34. package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +7 -1
  35. package/dist/js/example/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +28 -4
  36. package/dist/js/example/materials_category_components/operations/core/combinations/merge.json +14 -2
  37. package/dist/js/example/materials_category_components/operations/core/combinations/stack.json +14 -2
  38. package/dist/js/example/materials_category_components/operations/core/modifications/perturb.json +7 -1
  39. package/dist/js/example/model.json +2 -1
  40. package/dist/js/example/software/application.json +1 -0
  41. package/dist/js/example/software/executable.json +3 -4
  42. package/dist/js/example/software/flavor.json +9 -2
  43. package/dist/js/example/software/template.json +5 -8
  44. package/dist/js/example/software_directory/modeling/espresso.json +2 -1
  45. package/dist/js/example/software_directory/modeling/nwchem.json +3 -1
  46. package/dist/js/example/software_directory/modeling/unit/execution.json +57 -15
  47. package/dist/js/example/software_directory/modeling/vasp.json +2 -1
  48. package/dist/js/example/software_directory/scripting/jupyter_lab.json +2 -1
  49. package/dist/js/example/software_directory/scripting/python.json +2 -1
  50. package/dist/js/example/software_directory/scripting/shell.json +2 -1
  51. package/dist/js/example/software_directory/scripting/unit/execution.json +57 -15
  52. package/dist/js/example/system/runtime_items.json +14 -0
  53. package/dist/js/example/workflow/subworkflow.json +32 -10
  54. package/dist/js/example/workflow/unit/assignment.json +5 -1
  55. package/dist/js/example/workflow/unit/condition.json +5 -1
  56. package/dist/js/example/workflow/unit/execution.json +29 -9
  57. package/dist/js/example/workflow/unit/io/api.json +1 -0
  58. package/dist/js/example/workflow/unit/io/db_collection.json +5 -0
  59. package/dist/js/example/workflow/unit/io/db_ids.json +6 -0
  60. package/dist/js/example/workflow/unit/io/object_storage.json +2 -1
  61. package/dist/js/example/workflow/unit/io.json +22 -2
  62. package/dist/js/example/workflow/unit/map.json +5 -1
  63. package/dist/js/example/workflow/unit/reduce.json +5 -1
  64. package/dist/js/example/workflow.json +38 -11
  65. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +5 -0
  66. package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x.json +5 -0
  67. package/dist/js/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  68. package/dist/js/schema/context_providers_directory/by_application/qe_neb_context_provider.json +164 -6
  69. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_base_context_provider.json +10 -0
  70. package/dist/js/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +17 -1
  71. package/dist/js/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  72. package/dist/js/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  73. package/dist/js/schema/context_providers_directory/collinear_magnetization_context_provider.json +14 -0
  74. package/dist/js/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  75. package/dist/js/schema/context_providers_directory/points_grid_data_provider.json +23 -6
  76. package/dist/js/schema/context_providers_directory/points_path_data_provider.json +6 -2
  77. package/dist/js/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  78. package/dist/js/schema/core/primitive/linked_list/named_node.json +2 -1
  79. package/dist/js/schema/core/primitive/linked_list/named_node_in_group.json +2 -1
  80. package/dist/js/schema/core/primitive/linked_list.json +4 -2
  81. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +3 -0
  82. package/dist/js/schema/in_memory_entity/named.json +3 -0
  83. package/dist/js/schema/in_memory_entity/named_defaultable.json +3 -0
  84. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +3 -0
  85. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +3 -0
  86. package/dist/js/schema/job/base.json +133 -132
  87. package/dist/js/schema/job/compute.json +1 -1
  88. package/dist/js/schema/job/compute_property.json +182 -0
  89. package/dist/js/schema/job.json +3829 -4566
  90. package/dist/js/schema/material/material_properties.json +736 -0
  91. package/dist/js/schema/material/metadata/boundary_conditions.json +32 -0
  92. package/dist/js/schema/material/metadata/bulk_properties.json +13 -0
  93. package/dist/js/schema/material/metadata/slab_properties.json +41 -0
  94. package/dist/js/schema/material/metadata.json +101 -0
  95. package/dist/js/schema/material.json +117 -27
  96. package/dist/js/schema/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +1069 -268
  97. package/dist/js/schema/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +1069 -268
  98. package/dist/js/schema/materials_category/defective_structures/two_dimensional/adatom/configuration.json +464 -108
  99. package/dist/js/schema/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +1069 -268
  100. package/dist/js/schema/materials_category/defective_structures/two_dimensional/island/configuration.json +698 -164
  101. package/dist/js/schema/materials_category/defective_structures/two_dimensional/terrace/configuration.json +698 -164
  102. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +116 -27
  103. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +232 -54
  104. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +232 -54
  105. package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +116 -27
  106. package/dist/js/schema/materials_category/pristine_structures/three_dimensional/ideal_crystal.json +116 -27
  107. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanoribbon.json +348 -81
  108. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanotape.json +232 -54
  109. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab.json +232 -54
  110. package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +232 -54
  111. package/dist/js/schema/materials_category/processed_structures/two_dimensional/passivation/configuration.json +233 -54
  112. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +116 -27
  113. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +116 -27
  114. package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/void_region.json +116 -27
  115. package/dist/js/schema/materials_category_components/entities/core/three_dimensional/crystal.json +116 -27
  116. package/dist/js/schema/materials_category_components/entities/core/two_dimensional/vacuum.json +116 -27
  117. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +116 -27
  118. package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +116 -27
  119. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.json +116 -27
  120. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.json +116 -27
  121. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_uniform.json +116 -27
  122. package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/supercell.json +116 -27
  123. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers.json +116 -27
  124. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.json +116 -27
  125. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.json +116 -27
  126. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.json +116 -27
  127. package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +348 -81
  128. package/dist/js/schema/materials_category_components/operations/core/modifications/perturb.json +117 -27
  129. package/dist/js/schema/method/categorized_method.json +4 -0
  130. package/dist/js/schema/method/unit_method.json +3 -0
  131. package/dist/js/schema/method.json +7 -1
  132. package/dist/js/schema/methods_directory/legacy/localorbital.json +7 -1
  133. package/dist/js/schema/methods_directory/legacy/pseudopotential.json +7 -1
  134. package/dist/js/schema/methods_directory/legacy/regression.json +4 -0
  135. package/dist/js/schema/methods_directory/legacy/unknown.json +7 -1
  136. package/dist/js/schema/methods_directory/mathematical/cg.json +2 -1
  137. package/dist/js/schema/methods_directory/mathematical/davidson.json +2 -1
  138. package/dist/js/schema/methods_directory/mathematical/regression.json +3 -2
  139. package/dist/js/schema/methods_directory/physical/ao/dunning.json +2 -1
  140. package/dist/js/schema/methods_directory/physical/ao/other.json +2 -1
  141. package/dist/js/schema/methods_directory/physical/ao/pople.json +2 -1
  142. package/dist/js/schema/methods_directory/physical/psp.json +2 -1
  143. package/dist/js/schema/methods_directory/physical/pw.json +2 -1
  144. package/dist/js/schema/methods_directory/physical/smearing.json +2 -1
  145. package/dist/js/schema/methods_directory/physical/tetrahedron.json +2 -1
  146. package/dist/js/schema/model/categorized_model.json +5 -0
  147. package/dist/js/schema/model/model_without_method.json +1 -0
  148. package/dist/js/schema/model.json +7 -2
  149. package/dist/js/schema/models_directory/double_hybrid.json +1 -0
  150. package/dist/js/schema/models_directory/gga.json +1 -0
  151. package/dist/js/schema/models_directory/gw.json +1 -0
  152. package/dist/js/schema/models_directory/hybrid.json +1 -0
  153. package/dist/js/schema/models_directory/lda.json +1 -0
  154. package/dist/js/schema/models_directory/legacy/any.json +488 -0
  155. package/dist/js/schema/models_directory/legacy/dft.json +267 -39
  156. package/dist/js/schema/models_directory/legacy/ml.json +10 -9
  157. package/dist/js/schema/models_directory/legacy/unknown.json +10 -9
  158. package/dist/js/schema/models_directory/mgga.json +1 -0
  159. package/dist/js/schema/models_directory/re.json +1 -0
  160. package/dist/js/schema/project.json +3 -0
  161. package/dist/js/schema/properties_directory/non_scalar/workflow.json +3682 -4421
  162. package/dist/js/schema/property/holder.json +3717 -4456
  163. package/dist/js/schema/software/application.json +53 -24
  164. package/dist/js/schema/software/application_properties.json +68 -0
  165. package/dist/js/schema/software/application_with_build_config.json +52 -23
  166. package/dist/js/schema/software/executable.json +67 -108
  167. package/dist/js/schema/software/executable_properties.json +24 -0
  168. package/dist/js/schema/software/flavor.json +90 -128
  169. package/dist/js/schema/software/flavor_properties.json +50 -0
  170. package/dist/js/schema/software/template.json +30 -35
  171. package/dist/js/schema/software/template_properties.json +44 -0
  172. package/dist/js/schema/software_directory/modeling/deepmd.json +48 -19
  173. package/dist/js/schema/software_directory/modeling/lammps.json +47 -18
  174. package/dist/js/schema/software_directory/modeling/nwchem.json +48 -19
  175. package/dist/js/schema/software_directory/modeling/unit/execution.json +2019 -455
  176. package/dist/js/schema/software_directory/modeling/vasp.json +48 -19
  177. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +48 -19
  178. package/dist/js/schema/software_directory/scripting/python.json +48 -19
  179. package/dist/js/schema/software_directory/scripting/shell.json +48 -19
  180. package/dist/js/schema/software_directory/scripting/unit/execution.json +2019 -455
  181. package/dist/js/schema/system/bankable.json +4 -0
  182. package/dist/js/schema/system/creator.json +2 -1
  183. package/dist/js/schema/system/creator_account.json +3 -0
  184. package/dist/js/schema/system/in_set.json +3 -0
  185. package/dist/js/schema/system/name.json +3 -0
  186. package/dist/js/schema/system/owner.json +2 -1
  187. package/dist/js/schema/system/path_entity.json +3 -0
  188. package/dist/js/schema/system/runtime_item.json +17 -0
  189. package/dist/js/schema/system/runtime_items.json +94 -0
  190. package/dist/js/schema/workflow/base.json +4591 -39
  191. package/dist/js/schema/workflow/base_flow.json +1 -1
  192. package/dist/js/schema/workflow/subworkflow/mixin.json +3919 -0
  193. package/dist/js/schema/workflow/subworkflow/unit.json +2365 -1560
  194. package/dist/js/schema/workflow/subworkflow.json +3137 -1852
  195. package/dist/js/schema/workflow/unit/assertion.json +96 -140
  196. package/dist/js/schema/workflow/unit/assignment.json +129 -173
  197. package/dist/js/schema/workflow/unit/base.json +90 -133
  198. package/dist/js/schema/workflow/unit/condition.json +132 -175
  199. package/dist/js/schema/workflow/unit/context/_base.json +20 -0
  200. package/dist/js/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  201. package/dist/js/schema/workflow/unit/context/item/boundaryConditions.json +63 -0
  202. package/dist/js/schema/workflow/unit/context/item/collinearMagnetization.json +82 -0
  203. package/dist/js/schema/workflow/unit/context/item/cutoffs.json +38 -0
  204. package/dist/js/schema/workflow/unit/context/item/dynamics.json +48 -0
  205. package/dist/js/schema/workflow/unit/context/item/grid.json +100 -0
  206. package/dist/js/schema/workflow/unit/context/item/hubbard_j.json +59 -0
  207. package/dist/js/schema/workflow/unit/context/item/hubbard_legacy.json +49 -0
  208. package/dist/js/schema/workflow/unit/context/item/hubbard_u.json +57 -0
  209. package/dist/js/schema/workflow/unit/context/item/hubbard_v.json +64 -0
  210. package/dist/js/schema/workflow/unit/context/item/input.json +712 -0
  211. package/dist/js/schema/workflow/unit/context/item/mlSettings.json +43 -0
  212. package/dist/js/schema/workflow/unit/context/item/mlTrainTestSplit.json +37 -0
  213. package/dist/js/schema/workflow/unit/context/item/neb.json +35 -0
  214. package/dist/js/schema/workflow/unit/context/item/nonCollinearMagnetization.json +150 -0
  215. package/dist/js/schema/workflow/unit/context/item/path.json +62 -0
  216. package/dist/js/schema/workflow/unit/context/item.json +1594 -0
  217. package/dist/js/schema/workflow/unit/execution.json +1928 -423
  218. package/dist/js/schema/workflow/unit/input/_input.json +74 -12
  219. package/dist/js/schema/workflow/unit/input/_inputItem.json +70 -10
  220. package/dist/js/schema/workflow/unit/input/_inputItemId.json +3 -1
  221. package/dist/js/schema/workflow/unit/io/api.json +5 -1
  222. package/dist/js/schema/workflow/unit/io/db_collection.json +24 -0
  223. package/dist/js/schema/workflow/unit/io/db_ids.json +22 -0
  224. package/dist/js/schema/workflow/unit/io/object_storage.json +5 -1
  225. package/dist/js/schema/workflow/unit/io.json +182 -253
  226. package/dist/js/schema/workflow/unit/map.json +134 -177
  227. package/dist/js/schema/workflow/unit/mixins/assertion.json +23 -0
  228. package/dist/js/schema/workflow/unit/mixins/assignment.json +57 -0
  229. package/dist/js/schema/workflow/unit/mixins/base.json +50 -0
  230. package/dist/js/schema/workflow/unit/mixins/condition.json +61 -0
  231. package/dist/js/schema/workflow/unit/mixins/execution.json +1998 -0
  232. package/dist/js/schema/workflow/unit/mixins/io.json +131 -0
  233. package/dist/js/schema/workflow/unit/mixins/map.json +60 -0
  234. package/dist/js/schema/workflow/unit/mixins/processing.json +27 -0
  235. package/dist/js/schema/workflow/unit/mixins/reduce.json +43 -0
  236. package/dist/js/schema/workflow/unit/mixins/subworkflow.json +11 -0
  237. package/dist/js/schema/workflow/unit/reduce.json +117 -160
  238. package/dist/js/schema/workflow/unit/subworkflow.json +91 -134
  239. package/dist/js/schema/workflow/unit.json +285 -2477
  240. package/dist/js/schema/workflow.json +3684 -4422
  241. package/dist/js/schemas.json +1 -1
  242. package/dist/js/scripts/compileTs.js +1 -1
  243. package/dist/js/scripts/setSchemaIds.js +2 -1
  244. package/dist/js/types.d.ts +27163 -15301
  245. package/dist/js/types.js +5 -5
  246. package/dist/js/utils/ajv.js +5 -4
  247. package/dist/js/utils/common.js +3 -2
  248. package/dist/js/utils/filesystem.js +3 -2
  249. package/example/material.json +7 -1
  250. package/example/model.json +2 -1
  251. package/example/software/application.json +1 -0
  252. package/example/software/executable.json +3 -4
  253. package/example/software/flavor.json +9 -2
  254. package/example/software/template.json +5 -8
  255. package/example/software_directory/modeling/espresso.json +2 -1
  256. package/example/software_directory/modeling/nwchem.json +4 -2
  257. package/example/software_directory/modeling/unit/execution.json +17 -2
  258. package/example/software_directory/modeling/vasp.json +2 -1
  259. package/example/software_directory/scripting/jupyter-lab.json +2 -1
  260. package/example/software_directory/scripting/python.json +2 -1
  261. package/example/software_directory/scripting/shell.json +2 -1
  262. package/example/software_directory/scripting/unit/execution.json +17 -2
  263. package/example/system/runtime_items.json +14 -0
  264. package/example/workflow/unit/assignment.json +5 -1
  265. package/example/workflow/unit/condition.json +5 -1
  266. package/example/workflow/unit/execution.json +7 -3
  267. package/example/workflow/unit/io/api.json +1 -0
  268. package/example/workflow/unit/io/db_collection.json +5 -0
  269. package/example/workflow/unit/io/db_ids.json +6 -0
  270. package/example/workflow/unit/io/object_storage.json +2 -1
  271. package/example/workflow/unit/io.json +9 -29
  272. package/example/workflow/unit/map.json +5 -1
  273. package/example/workflow/unit/reduce.json +5 -1
  274. package/example/workflow.json +6 -1
  275. package/package.json +2 -1
  276. package/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +6 -1
  277. package/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
  278. package/schema/context_providers_directory/by_application/qe_neb_context_provider.json +12 -6
  279. package/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +10 -1
  280. package/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
  281. package/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
  282. package/schema/context_providers_directory/collinear_magnetization_context_provider.json +18 -4
  283. package/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
  284. package/schema/context_providers_directory/points_grid_data_provider.json +24 -7
  285. package/schema/context_providers_directory/points_path_data_provider.json +7 -3
  286. package/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
  287. package/schema/job/base.json +4 -5
  288. package/schema/job/compute.json +1 -1
  289. package/schema/job/compute_property.json +15 -0
  290. package/schema/material/material_properties.json +65 -0
  291. package/schema/material/metadata/boundary_conditions.json +24 -0
  292. package/schema/material/metadata/bulk_properties.json +13 -0
  293. package/schema/material/metadata/slab_properties.json +41 -0
  294. package/schema/material/metadata.json +27 -0
  295. package/schema/material.json +5 -57
  296. package/schema/method.json +7 -1
  297. package/schema/model.json +0 -1
  298. package/schema/models_directory/legacy/any.json +20 -0
  299. package/schema/models_directory/legacy/dft.json +63 -12
  300. package/schema/models_directory/legacy/ml.json +10 -7
  301. package/schema/models_directory/legacy/unknown.json +10 -7
  302. package/schema/software/application.json +4 -35
  303. package/schema/software/application_properties.json +68 -0
  304. package/schema/software/executable.json +5 -23
  305. package/schema/software/executable_properties.json +24 -0
  306. package/schema/software/flavor.json +6 -28
  307. package/schema/software/flavor_properties.json +33 -0
  308. package/schema/software/template.json +2 -26
  309. package/schema/software/template_properties.json +44 -0
  310. package/schema/system/bankable.json +5 -1
  311. package/schema/system/creator.json +4 -1
  312. package/schema/system/creator_account.json +4 -1
  313. package/schema/system/in_set.json +4 -1
  314. package/schema/system/name.json +4 -1
  315. package/schema/system/owner.json +4 -1
  316. package/schema/system/runtime_item.json +17 -0
  317. package/schema/system/runtime_items.json +42 -0
  318. package/schema/workflow/base.json +17 -17
  319. package/schema/workflow/subworkflow/mixin.json +48 -0
  320. package/schema/workflow/subworkflow/unit.json +0 -6
  321. package/schema/workflow/subworkflow.json +4 -31
  322. package/schema/workflow/unit/assertion.json +2 -16
  323. package/schema/workflow/unit/assignment.json +2 -34
  324. package/schema/workflow/unit/base.json +6 -51
  325. package/schema/workflow/unit/condition.json +2 -38
  326. package/schema/workflow/unit/context/_base.json +20 -0
  327. package/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
  328. package/schema/workflow/unit/context/item/boundaryConditions.json +27 -0
  329. package/schema/workflow/unit/context/item/collinearMagnetization.json +27 -0
  330. package/schema/workflow/unit/context/item/cutoffs.json +20 -0
  331. package/schema/workflow/unit/context/item/dynamics.json +20 -0
  332. package/schema/workflow/unit/context/item/grid.json +31 -0
  333. package/schema/workflow/unit/context/item/hubbard_j.json +20 -0
  334. package/schema/workflow/unit/context/item/hubbard_legacy.json +20 -0
  335. package/schema/workflow/unit/context/item/hubbard_u.json +27 -0
  336. package/schema/workflow/unit/context/item/hubbard_v.json +20 -0
  337. package/schema/workflow/unit/context/item/input.json +47 -0
  338. package/schema/workflow/unit/context/item/mlSettings.json +20 -0
  339. package/schema/workflow/unit/context/item/mlTrainTestSplit.json +20 -0
  340. package/schema/workflow/unit/context/item/neb.json +20 -0
  341. package/schema/workflow/unit/context/item/nonCollinearMagnetization.json +27 -0
  342. package/schema/workflow/unit/context/item/path.json +33 -0
  343. package/schema/workflow/unit/context/item.json +55 -0
  344. package/schema/workflow/unit/execution.json +4 -25
  345. package/schema/workflow/unit/input/_input.json +1 -1
  346. package/schema/workflow/unit/input/_inputItem.json +9 -9
  347. package/schema/workflow/unit/input/_inputItemId.json +3 -1
  348. package/schema/workflow/unit/io/api.json +6 -2
  349. package/schema/workflow/unit/io/db_collection.json +24 -0
  350. package/schema/workflow/unit/io/db_ids.json +22 -0
  351. package/schema/workflow/unit/io/object_storage.json +6 -2
  352. package/schema/workflow/unit/io.json +2 -39
  353. package/schema/workflow/unit/map.json +2 -53
  354. package/schema/workflow/unit/mixins/assertion.json +23 -0
  355. package/schema/workflow/unit/mixins/assignment.json +42 -0
  356. package/schema/workflow/unit/mixins/base.json +50 -0
  357. package/schema/workflow/unit/mixins/condition.json +46 -0
  358. package/schema/workflow/unit/mixins/execution.json +49 -0
  359. package/schema/workflow/unit/mixins/io.json +46 -0
  360. package/schema/workflow/unit/mixins/map.json +61 -0
  361. package/schema/workflow/unit/{processing.json → mixins/processing.json} +3 -7
  362. package/schema/workflow/unit/mixins/reduce.json +44 -0
  363. package/schema/workflow/unit/mixins/subworkflow.json +12 -0
  364. package/schema/workflow/unit/reduce.json +2 -36
  365. package/schema/workflow/unit/subworkflow.json +4 -6
  366. package/schema/workflow/unit.json +1 -19
  367. package/schema/workflow.json +19 -15
  368. package/src/html/index.html +2 -1
  369. package/src/js/esse/JSONSchemasGenerator.ts +2 -1
  370. package/src/js/esse/JSONSchemasInterface.ts +1 -1
  371. package/src/js/esse/schemaUtils.ts +1 -1
  372. package/src/js/esse/server/utils.ts +82 -0
  373. package/src/js/esse/utils.ts +0 -74
  374. package/src/js/scripts/compileTs.ts +1 -1
  375. package/src/js/scripts/setSchemaIds.ts +1 -0
  376. package/src/js/utils/ajv.ts +1 -1
  377. package/dist/js/example/workflow/unit/io/db.json +0 -15
  378. package/dist/js/example/workflow/unit/processing.json +0 -13
  379. package/dist/js/schema/workflow/unit/io/db.json +0 -40
  380. package/dist/js/schema/workflow/unit/processing.json +0 -242
  381. package/example/workflow/unit/io/db.json +0 -15
  382. package/example/workflow/unit/processing.json +0 -13
  383. package/schema/workflow/unit/io/db.json +0 -40
@@ -1,41 +1,14 @@
1
1
  {
2
2
  "$id": "workflow/subworkflow",
3
3
  "$schema": "http://json-schema.org/draft-07/schema#",
4
- "title": "Subworkflow",
4
+ "title": "Subworkflow Schema",
5
5
  "type": "object",
6
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  "allOf": [
7
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  {
8
- "$ref": "base_flow.json"
9
- }
10
- ],
11
- "properties": {
12
- "units": {
13
- "description": "Contains the Units of the subworkflow",
14
- "type": "array",
15
- "items": {
16
- "$ref": "./subworkflow/unit.json"
17
- }
18
- },
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- "model": {
20
- "description": "Model used inside the subworkflow",
21
- "$ref": "../model.json"
22
- },
23
- "application": {
24
- "description": "information about the simulation engine/application.",
25
- "$ref": "../software/application.json"
8
+ "$ref": "../in_memory_entity/named.json"
26
9
  },
27
- "isDraft": {
28
- "description": "Defines whether to store the results/properties extracted in this unit to properties collection",
29
- "type": "boolean",
30
- "default": false
31
- },
32
- "systemName": {
33
- "description": "system name of the subworkflow",
34
- "type": "string"
10
+ {
11
+ "$ref": "./subworkflow/mixin.json"
35
12
  }
36
- },
37
- "required": [
38
- "model",
39
- "application"
40
13
  ]
41
14
  }
@@ -6,23 +6,9 @@
6
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  "allOf": [
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  {
8
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  "$ref": "./base.json"
9
- }
10
- ],
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- "properties": {
12
- "type": {
13
- "const": "assertion"
14
- },
15
- "statement": {
16
- "type": "string",
17
- "description": "The statement to be evaluated"
18
9
  },
19
- "errorMessage": {
20
- "type": "string",
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- "description": "The error message to be displayed if the assertion fails"
10
+ {
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+ "$ref": "./mixins/assertion.json"
22
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  }
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- },
24
- "required": [
25
- "name",
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- "statement"
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  ]
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  }
@@ -9,41 +9,9 @@
9
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  },
10
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  {
11
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  "$ref": "./../../system/scope.json"
12
- }
13
- ],
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- "properties": {
15
- "type": {
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- "const": "assignment"
17
- },
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- "input": {
19
- "description": "Input information for assignment. if omitted, means that it is an initialization unit, otherwise it is an assignment.",
20
- "type": "array",
21
- "items": {
22
- "$ref": "input/_inputItemScope.json"
23
- }
24
12
  },
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- "operand": {
26
- "description": "Name of the global variable. e.g. 'x'",
27
- "type": "string"
28
- },
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- "value": {
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- "description": "Value of the variable. The value content could be a simple integer, string or a python expression. e.g. '0' (initialization), 'sin(x)+1' (expression)",
31
- "oneOf": [
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- {
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- "type": "string"
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- },
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- {
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- "type": "boolean"
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- },
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- {
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- "type": "number"
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- }
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- ]
13
+ {
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+ "$ref": "./mixins/assignment.json"
42
15
  }
43
- },
44
- "required": [
45
- "name",
46
- "operand",
47
- "value"
48
16
  ]
49
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  }
@@ -5,64 +5,19 @@
5
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  "type": "object",
6
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  "allOf": [
7
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  {
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- "$ref": "../../in_memory_entity/named_defaultable_runtime_items.json"
8
+ "$ref": "../../in_memory_entity/named_defaultable.json"
9
+ },
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+ {
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+ "$ref": "../../system/runtime_items.json"
9
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  },
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  {
11
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  "$ref": "../../system/tags.json"
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  },
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  {
14
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  "$ref": "../../system/status.json"
15
- }
16
- ],
17
- "properties": {
18
- "_id": {
19
- "type": "string"
20
- },
21
- "isDraft": {
22
- "type": "boolean"
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- },
24
- "type": {
25
- "description": "type of the unit",
26
- "type": "string"
27
- },
28
- "name": {
29
- "description": "name of the unit. e.g. pw_scf",
30
- "type": "string"
31
18
  },
32
- "status": {
33
- "description": "Status of the unit.",
34
- "type": "string",
35
- "enum": [
36
- "idle",
37
- "active",
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- "warning",
39
- "error",
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- "finished"
41
- ]
42
- },
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- "head": {
44
- "description": "Whether this unit is the first one to be executed.",
45
- "type": "boolean"
46
- },
47
- "flowchartId": {
48
- "description": "Identity of the unit in the workflow. Used to trace the execution flow of the workflow.",
49
- "type": "string"
50
- },
51
- "next": {
52
- "description": "Next unit's flowchartId. If empty, the current unit is the last.",
53
- "type": "string"
54
- },
55
- "enableRender": {
56
- "description": "Whether Rupy should attempt to use Jinja templating to add context variables into the unit",
57
- "type": "boolean"
58
- },
59
- "context": {
60
- "type": "object"
19
+ {
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+ "$ref": "./mixins/base.json"
61
21
  }
62
- },
63
- "additionalProperties": true,
64
- "required": [
65
- "type",
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- "flowchartId"
67
22
  ]
68
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@@ -6,45 +6,9 @@
6
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  "allOf": [
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  {
8
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  "$ref": "./base.json"
9
- }
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- ],
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- "properties": {
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- "type": {
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- "const": "condition"
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- },
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- "input": {
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- "description": "Input information for condition.",
17
- "type": "array",
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- "items": {
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- "$ref": "input/_inputItemScope.json"
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- }
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- },
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- "statement": {
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- "description": "Condition statement. e.g. 'abs(x-total_energy) < 1e-5'",
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- "type": "string"
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- },
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- "then": {
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- "description": "Flowchart ID reference for `then` part of the condition.",
28
- "type": "string"
29
9
  },
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- "else": {
31
- "description": "Flowchart ID reference for `else` part of the condition.",
32
- "type": "string"
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- },
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- "maxOccurrences": {
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- "description": "Maximum occurrence of the condition, usable for loops.",
36
- "type": "integer"
37
- },
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- "throwException": {
39
- "description": "Throw exception on reaching to maximum occurence.",
40
- "type": "boolean"
10
+ {
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+ "$ref": "./mixins/condition.json"
41
12
  }
42
- },
43
- "required": [
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- "input",
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- "statement",
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- "then",
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- "else",
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- "maxOccurrences"
49
13
  ]
50
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  }
@@ -0,0 +1,20 @@
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+ {
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+ "$id": "workflow/unit/context/-base",
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "base context item schema",
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+ "type": "object",
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+ "properties": {
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+ "isEdited": {
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+ "type": "boolean"
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+ },
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+ "extraData": {
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+ "type": "object"
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+ }
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+ },
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+ "required": [
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+ "name",
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+ "isEdited",
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+ "data",
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+ "extraData"
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+ ]
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+ }
@@ -0,0 +1,14 @@
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+ {
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+ "$id": "workflow/unit/context/-extra-data-material-hash",
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "extraData with materialHash schema",
5
+ "type": "object",
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+ "properties": {
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+ "materialHash": {
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+ "type": "string"
9
+ }
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+ },
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+ "required": [
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+ "materialHash"
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+ ]
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+ }
@@ -0,0 +1,27 @@
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+ {
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+ "$id": "workflow/unit/context/item/boundaryConditions",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "boundaryConditions context item schema",
5
+ "type": "object",
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+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
9
+ }
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+ ],
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+ "properties": {
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+ "name": {
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+ "type": "string",
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+ "const": "boundaryConditions"
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/boundary_conditions_data_provider.json"
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+ },
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+ "extraData": {
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+ "allOf": [
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+ {
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+ "$ref": "../_extra_data_material_hash.json"
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+ }
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+ ]
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+ }
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+ }
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+ }
@@ -0,0 +1,27 @@
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+ {
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+ "$id": "workflow/unit/context/item/collinearMagnetization",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "collinearMagnetization context item schema",
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+ "type": "object",
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+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
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+ }
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+ ],
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+ "properties": {
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+ "name": {
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+ "type": "string",
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+ "const": "collinearMagnetization"
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/collinear_magnetization_context_provider.json"
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+ },
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+ "extraData": {
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+ "allOf": [
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+ {
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+ "$ref": "../_extra_data_material_hash.json"
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+ }
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+ ]
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+ }
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+ }
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+ }
@@ -0,0 +1,20 @@
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+ {
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+ "$id": "workflow/unit/context/item/cutoffs",
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "cutoffs context item schema",
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+ "type": "object",
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+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
9
+ }
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+ ],
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+ "properties": {
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+ "name": {
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+ "type": "string",
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+ "const": "cutoffs"
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/planewave_cutoffs_context_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,20 @@
1
+ {
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+ "$id": "workflow/unit/context/item/dynamics",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "dynamics context item schema",
5
+ "type": "object",
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+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
9
+ }
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+ ],
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+ "properties": {
12
+ "name": {
13
+ "type": "string",
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+ "const": "dynamics"
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+ },
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+ "data": {
17
+ "$ref": "../../../../context_providers_directory/ion_dynamics_context_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,31 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/grid",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "grid context item schema",
5
+ "type": "object",
6
+ "allOf": [
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+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
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+ "properties": {
12
+ "name": {
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+ "type": "string",
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+ "enum": [
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+ "kgrid",
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+ "qgrid",
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+ "igrid"
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+ ]
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/points_grid_data_provider.json"
22
+ },
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+ "extraData": {
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+ "allOf": [
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+ {
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+ "$ref": "../_extra_data_material_hash.json"
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+ }
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+ ]
29
+ }
30
+ }
31
+ }
@@ -0,0 +1,20 @@
1
+ {
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+ "$id": "workflow/unit/context/item/hubbard-j",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "hubbard_j context item schema",
5
+ "type": "object",
6
+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
9
+ }
10
+ ],
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+ "properties": {
12
+ "name": {
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+ "type": "string",
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+ "const": "hubbard_j"
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/hubbard_j_context_provider.json"
18
+ }
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+ }
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+ }
@@ -0,0 +1,20 @@
1
+ {
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+ "$id": "workflow/unit/context/item/hubbard-legacy",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "hubbard_legacy context item schema",
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+ "type": "object",
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+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
9
+ }
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+ ],
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+ "properties": {
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+ "name": {
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+ "type": "string",
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+ "const": "hubbard_legacy"
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/hubbard_legacy_context_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,27 @@
1
+ {
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+ "$id": "workflow/unit/context/item/hubbard-u",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "hubbard_u context item schema",
5
+ "type": "object",
6
+ "allOf": [
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+ {
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+ "$ref": "../_base.json"
9
+ }
10
+ ],
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+ "properties": {
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+ "name": {
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+ "type": "string",
14
+ "const": "hubbard_u"
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+ },
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+ "data": {
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+ "$ref": "../../../../context_providers_directory/hubbard_u_context_provider.json"
18
+ },
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+ "extraData": {
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+ "allOf": [
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+ {
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+ "$ref": "../_extra_data_material_hash.json"
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+ }
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+ ]
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+ }
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+ }
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+ }
@@ -0,0 +1,20 @@
1
+ {
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+ "$id": "workflow/unit/context/item/hubbard-v",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "hubbard_v context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "const": "hubbard_v"
15
+ },
16
+ "data": {
17
+ "$ref": "../../../../context_providers_directory/hubbard_v_context_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,47 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/input",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "input context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "const": "input"
15
+ },
16
+ "data": {
17
+ "type": "object",
18
+ "oneOf": [
19
+ {
20
+ "$ref": "../../../../context_providers_directory/by_application/nwchem_total_energy_context_provider.json"
21
+ },
22
+ {
23
+ "$ref": "../../../../context_providers_directory/by_application/qe_neb_context_provider.json"
24
+ },
25
+ {
26
+ "$ref": "../../../../context_providers_directory/by_application/qe_pwx_context_provider.json"
27
+ },
28
+ {
29
+ "$ref": "../../../../context_providers_directory/by_application/vasp_context_provider.json"
30
+ },
31
+ {
32
+ "$ref": "../../../../context_providers_directory/by_application/vasp_neb_context_provider.json"
33
+ }
34
+ ],
35
+ "discriminator": {
36
+ "propertyName": "contextProviderName"
37
+ }
38
+ },
39
+ "extraData": {
40
+ "allOf": [
41
+ {
42
+ "$ref": "../_extra_data_material_hash.json"
43
+ }
44
+ ]
45
+ }
46
+ }
47
+ }
@@ -0,0 +1,20 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/mlSettings",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "mlSettings context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "const": "mlSettings"
15
+ },
16
+ "data": {
17
+ "$ref": "../../../../context_providers_directory/ml_settings_context_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,20 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/mlTrainTestSplit",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "mlTrainTestSplit context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "const": "mlTrainTestSplit"
15
+ },
16
+ "data": {
17
+ "$ref": "../../../../context_providers_directory/ml_train_test_split_context_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,20 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/neb",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "neb context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "const": "neb"
15
+ },
16
+ "data": {
17
+ "$ref": "../../../../context_providers_directory/neb_data_provider.json"
18
+ }
19
+ }
20
+ }
@@ -0,0 +1,27 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/nonCollinearMagnetization",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "nonCollinearMagnetization context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "const": "nonCollinearMagnetization"
15
+ },
16
+ "data": {
17
+ "$ref": "../../../../context_providers_directory/non_collinear_magnetization_context_provider.json"
18
+ },
19
+ "extraData": {
20
+ "allOf": [
21
+ {
22
+ "$ref": "../_extra_data_material_hash.json"
23
+ }
24
+ ]
25
+ }
26
+ }
27
+ }
@@ -0,0 +1,33 @@
1
+ {
2
+ "$id": "workflow/unit/context/item/path",
3
+ "$schema": "http://json-schema.org/draft-07/schema#",
4
+ "title": "path context item schema",
5
+ "type": "object",
6
+ "allOf": [
7
+ {
8
+ "$ref": "../_base.json"
9
+ }
10
+ ],
11
+ "properties": {
12
+ "name": {
13
+ "type": "string",
14
+ "enum": [
15
+ "qpath",
16
+ "ipath",
17
+ "kpath",
18
+ "explicitKPath",
19
+ "explicitKPath2PIBA"
20
+ ]
21
+ },
22
+ "data": {
23
+ "$ref": "../../../../context_providers_directory/points_path_data_provider.json"
24
+ },
25
+ "extraData": {
26
+ "allOf": [
27
+ {
28
+ "$ref": "../_extra_data_material_hash.json"
29
+ }
30
+ ]
31
+ }
32
+ }
33
+ }