@mat3ra/esse 2026.5.18-2 → 2026.5.27-0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/js/esse/JSONSchemasGenerator.d.ts +2 -1
- package/dist/js/esse/JSONSchemasGenerator.js +1 -1
- package/dist/js/esse/JSONSchemasInterface.d.ts +1 -1
- package/dist/js/esse/JSONSchemasInterface.js +1 -1
- package/dist/js/esse/JSONSchemasInterfaceServer.js +3 -2
- package/dist/js/esse/schemaUtils.d.ts +1 -1
- package/dist/js/esse/schemaUtils.js +2 -1
- package/dist/js/esse/server/utils.d.ts +12 -0
- package/dist/js/esse/server/utils.js +68 -0
- package/dist/js/esse/utils.d.ts +0 -11
- package/dist/js/esse/utils.js +3 -60
- package/dist/js/example/job.json +38 -11
- package/dist/js/example/material.json +7 -1
- package/dist/js/example/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +35 -5
- package/dist/js/example/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +28 -4
- package/dist/js/example/materials_category/defective_structures/two_dimensional/adatom/configuration.json +28 -4
- package/dist/js/example/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +35 -5
- package/dist/js/example/materials_category/defective_structures/two_dimensional/island/configuration.json +42 -6
- package/dist/js/example/materials_category/defective_structures/two_dimensional/terrace/configuration.json +42 -6
- package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +14 -2
- package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +14 -2
- package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +14 -2
- package/dist/js/example/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +7 -1
- package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanoribbon.json +21 -3
- package/dist/js/example/materials_category/pristine_structures/two_dimensional/nanotape.json +14 -2
- package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab.json +14 -2
- package/dist/js/example/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +14 -2
- package/dist/js/example/materials_category/processed_structures/two_dimensional/passivation/configuration.json +28 -4
- package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +7 -1
- package/dist/js/example/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +7 -1
- package/dist/js/example/materials_category_components/entities/core/three_dimensional/crystal.json +7 -1
- package/dist/js/example/materials_category_components/entities/core/two_dimensional/vacuum.json +7 -1
- package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +7 -1
- package/dist/js/example/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +7 -1
- package/dist/js/example/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +28 -4
- package/dist/js/example/materials_category_components/operations/core/combinations/merge.json +14 -2
- package/dist/js/example/materials_category_components/operations/core/combinations/stack.json +14 -2
- package/dist/js/example/materials_category_components/operations/core/modifications/perturb.json +7 -1
- package/dist/js/example/model.json +2 -1
- package/dist/js/example/software/application.json +1 -0
- package/dist/js/example/software/executable.json +3 -4
- package/dist/js/example/software/flavor.json +9 -2
- package/dist/js/example/software/template.json +5 -8
- package/dist/js/example/software_directory/modeling/espresso.json +2 -1
- package/dist/js/example/software_directory/modeling/nwchem.json +3 -1
- package/dist/js/example/software_directory/modeling/unit/execution.json +57 -15
- package/dist/js/example/software_directory/modeling/vasp.json +2 -1
- package/dist/js/example/software_directory/scripting/jupyter_lab.json +2 -1
- package/dist/js/example/software_directory/scripting/python.json +2 -1
- package/dist/js/example/software_directory/scripting/shell.json +2 -1
- package/dist/js/example/software_directory/scripting/unit/execution.json +57 -15
- package/dist/js/example/system/runtime_items.json +14 -0
- package/dist/js/example/workflow/subworkflow.json +32 -10
- package/dist/js/example/workflow/unit/assignment.json +5 -1
- package/dist/js/example/workflow/unit/condition.json +5 -1
- package/dist/js/example/workflow/unit/execution.json +29 -9
- package/dist/js/example/workflow/unit/io/api.json +1 -0
- package/dist/js/example/workflow/unit/io/db_collection.json +5 -0
- package/dist/js/example/workflow/unit/io/db_ids.json +6 -0
- package/dist/js/example/workflow/unit/io/object_storage.json +2 -1
- package/dist/js/example/workflow/unit/io.json +22 -2
- package/dist/js/example/workflow/unit/map.json +5 -1
- package/dist/js/example/workflow/unit/reduce.json +5 -1
- package/dist/js/example/workflow.json +38 -11
- package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +5 -0
- package/dist/js/schema/apse/file/applications/espresso/7.2/pw.x.json +5 -0
- package/dist/js/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
- package/dist/js/schema/context_providers_directory/by_application/qe_neb_context_provider.json +164 -6
- package/dist/js/schema/context_providers_directory/by_application/qe_pwx_base_context_provider.json +10 -0
- package/dist/js/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +17 -1
- package/dist/js/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
- package/dist/js/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
- package/dist/js/schema/context_providers_directory/collinear_magnetization_context_provider.json +14 -0
- package/dist/js/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
- package/dist/js/schema/context_providers_directory/points_grid_data_provider.json +23 -6
- package/dist/js/schema/context_providers_directory/points_path_data_provider.json +6 -2
- package/dist/js/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
- package/dist/js/schema/core/primitive/linked_list/named_node.json +2 -1
- package/dist/js/schema/core/primitive/linked_list/named_node_in_group.json +2 -1
- package/dist/js/schema/core/primitive/linked_list.json +4 -2
- package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +3 -0
- package/dist/js/schema/in_memory_entity/named.json +3 -0
- package/dist/js/schema/in_memory_entity/named_defaultable.json +3 -0
- package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +3 -0
- package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +3 -0
- package/dist/js/schema/job/base.json +133 -132
- package/dist/js/schema/job/compute.json +1 -1
- package/dist/js/schema/job/compute_property.json +182 -0
- package/dist/js/schema/job.json +3829 -4566
- package/dist/js/schema/material/material_properties.json +736 -0
- package/dist/js/schema/material/metadata/boundary_conditions.json +32 -0
- package/dist/js/schema/material/metadata/bulk_properties.json +13 -0
- package/dist/js/schema/material/metadata/slab_properties.json +41 -0
- package/dist/js/schema/material/metadata.json +101 -0
- package/dist/js/schema/material.json +117 -27
- package/dist/js/schema/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.json +1069 -268
- package/dist/js/schema/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.json +1069 -268
- package/dist/js/schema/materials_category/defective_structures/two_dimensional/adatom/configuration.json +464 -108
- package/dist/js/schema/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.json +1069 -268
- package/dist/js/schema/materials_category/defective_structures/two_dimensional/island/configuration.json +698 -164
- package/dist/js/schema/materials_category/defective_structures/two_dimensional/terrace/configuration.json +698 -164
- package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.json +116 -27
- package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.json +232 -54
- package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json +232 -54
- package/dist/js/schema/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.json +116 -27
- package/dist/js/schema/materials_category/pristine_structures/three_dimensional/ideal_crystal.json +116 -27
- package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanoribbon.json +348 -81
- package/dist/js/schema/materials_category/pristine_structures/two_dimensional/nanotape.json +232 -54
- package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab.json +232 -54
- package/dist/js/schema/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.json +232 -54
- package/dist/js/schema/materials_category/processed_structures/two_dimensional/passivation/configuration.json +233 -54
- package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.json +116 -27
- package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.json +116 -27
- package/dist/js/schema/materials_category_components/entities/auxiliary/zero_dimensional/void_region.json +116 -27
- package/dist/js/schema/materials_category_components/entities/core/three_dimensional/crystal.json +116 -27
- package/dist/js/schema/materials_category_components/entities/core/two_dimensional/vacuum.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/strained_uniform.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/three_dimensional/supercell.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.json +116 -27
- package/dist/js/schema/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.json +348 -81
- package/dist/js/schema/materials_category_components/operations/core/modifications/perturb.json +117 -27
- package/dist/js/schema/method/categorized_method.json +4 -0
- package/dist/js/schema/method/unit_method.json +3 -0
- package/dist/js/schema/method.json +7 -1
- package/dist/js/schema/methods_directory/legacy/localorbital.json +7 -1
- package/dist/js/schema/methods_directory/legacy/pseudopotential.json +7 -1
- package/dist/js/schema/methods_directory/legacy/regression.json +4 -0
- package/dist/js/schema/methods_directory/legacy/unknown.json +7 -1
- package/dist/js/schema/methods_directory/mathematical/cg.json +2 -1
- package/dist/js/schema/methods_directory/mathematical/davidson.json +2 -1
- package/dist/js/schema/methods_directory/mathematical/regression.json +3 -2
- package/dist/js/schema/methods_directory/physical/ao/dunning.json +2 -1
- package/dist/js/schema/methods_directory/physical/ao/other.json +2 -1
- package/dist/js/schema/methods_directory/physical/ao/pople.json +2 -1
- package/dist/js/schema/methods_directory/physical/psp.json +2 -1
- package/dist/js/schema/methods_directory/physical/pw.json +2 -1
- package/dist/js/schema/methods_directory/physical/smearing.json +2 -1
- package/dist/js/schema/methods_directory/physical/tetrahedron.json +2 -1
- package/dist/js/schema/model/categorized_model.json +5 -0
- package/dist/js/schema/model/model_without_method.json +1 -0
- package/dist/js/schema/model.json +7 -2
- package/dist/js/schema/models_directory/double_hybrid.json +1 -0
- package/dist/js/schema/models_directory/gga.json +1 -0
- package/dist/js/schema/models_directory/gw.json +1 -0
- package/dist/js/schema/models_directory/hybrid.json +1 -0
- package/dist/js/schema/models_directory/lda.json +1 -0
- package/dist/js/schema/models_directory/legacy/any.json +488 -0
- package/dist/js/schema/models_directory/legacy/dft.json +267 -39
- package/dist/js/schema/models_directory/legacy/ml.json +10 -9
- package/dist/js/schema/models_directory/legacy/unknown.json +10 -9
- package/dist/js/schema/models_directory/mgga.json +1 -0
- package/dist/js/schema/models_directory/re.json +1 -0
- package/dist/js/schema/project.json +3 -0
- package/dist/js/schema/properties_directory/non_scalar/workflow.json +3682 -4421
- package/dist/js/schema/property/holder.json +3717 -4456
- package/dist/js/schema/software/application.json +53 -24
- package/dist/js/schema/software/application_properties.json +68 -0
- package/dist/js/schema/software/application_with_build_config.json +52 -23
- package/dist/js/schema/software/executable.json +67 -108
- package/dist/js/schema/software/executable_properties.json +24 -0
- package/dist/js/schema/software/flavor.json +90 -128
- package/dist/js/schema/software/flavor_properties.json +50 -0
- package/dist/js/schema/software/template.json +30 -35
- package/dist/js/schema/software/template_properties.json +44 -0
- package/dist/js/schema/software_directory/modeling/deepmd.json +48 -19
- package/dist/js/schema/software_directory/modeling/lammps.json +47 -18
- package/dist/js/schema/software_directory/modeling/nwchem.json +48 -19
- package/dist/js/schema/software_directory/modeling/unit/execution.json +2019 -455
- package/dist/js/schema/software_directory/modeling/vasp.json +48 -19
- package/dist/js/schema/software_directory/scripting/jupyter_lab.json +48 -19
- package/dist/js/schema/software_directory/scripting/python.json +48 -19
- package/dist/js/schema/software_directory/scripting/shell.json +48 -19
- package/dist/js/schema/software_directory/scripting/unit/execution.json +2019 -455
- package/dist/js/schema/system/bankable.json +4 -0
- package/dist/js/schema/system/creator.json +2 -1
- package/dist/js/schema/system/creator_account.json +3 -0
- package/dist/js/schema/system/in_set.json +3 -0
- package/dist/js/schema/system/name.json +3 -0
- package/dist/js/schema/system/owner.json +2 -1
- package/dist/js/schema/system/path_entity.json +3 -0
- package/dist/js/schema/system/runtime_item.json +17 -0
- package/dist/js/schema/system/runtime_items.json +94 -0
- package/dist/js/schema/workflow/base.json +4591 -39
- package/dist/js/schema/workflow/base_flow.json +1 -1
- package/dist/js/schema/workflow/subworkflow/mixin.json +3919 -0
- package/dist/js/schema/workflow/subworkflow/unit.json +2365 -1560
- package/dist/js/schema/workflow/subworkflow.json +3137 -1852
- package/dist/js/schema/workflow/unit/assertion.json +96 -140
- package/dist/js/schema/workflow/unit/assignment.json +129 -173
- package/dist/js/schema/workflow/unit/base.json +90 -133
- package/dist/js/schema/workflow/unit/condition.json +132 -175
- package/dist/js/schema/workflow/unit/context/_base.json +20 -0
- package/dist/js/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
- package/dist/js/schema/workflow/unit/context/item/boundaryConditions.json +63 -0
- package/dist/js/schema/workflow/unit/context/item/collinearMagnetization.json +82 -0
- package/dist/js/schema/workflow/unit/context/item/cutoffs.json +38 -0
- package/dist/js/schema/workflow/unit/context/item/dynamics.json +48 -0
- package/dist/js/schema/workflow/unit/context/item/grid.json +100 -0
- package/dist/js/schema/workflow/unit/context/item/hubbard_j.json +59 -0
- package/dist/js/schema/workflow/unit/context/item/hubbard_legacy.json +49 -0
- package/dist/js/schema/workflow/unit/context/item/hubbard_u.json +57 -0
- package/dist/js/schema/workflow/unit/context/item/hubbard_v.json +64 -0
- package/dist/js/schema/workflow/unit/context/item/input.json +712 -0
- package/dist/js/schema/workflow/unit/context/item/mlSettings.json +43 -0
- package/dist/js/schema/workflow/unit/context/item/mlTrainTestSplit.json +37 -0
- package/dist/js/schema/workflow/unit/context/item/neb.json +35 -0
- package/dist/js/schema/workflow/unit/context/item/nonCollinearMagnetization.json +150 -0
- package/dist/js/schema/workflow/unit/context/item/path.json +62 -0
- package/dist/js/schema/workflow/unit/context/item.json +1594 -0
- package/dist/js/schema/workflow/unit/execution.json +1928 -423
- package/dist/js/schema/workflow/unit/input/_input.json +74 -12
- package/dist/js/schema/workflow/unit/input/_inputItem.json +70 -10
- package/dist/js/schema/workflow/unit/input/_inputItemId.json +3 -1
- package/dist/js/schema/workflow/unit/io/api.json +5 -1
- package/dist/js/schema/workflow/unit/io/db_collection.json +24 -0
- package/dist/js/schema/workflow/unit/io/db_ids.json +22 -0
- package/dist/js/schema/workflow/unit/io/object_storage.json +5 -1
- package/dist/js/schema/workflow/unit/io.json +182 -253
- package/dist/js/schema/workflow/unit/map.json +134 -177
- package/dist/js/schema/workflow/unit/mixins/assertion.json +23 -0
- package/dist/js/schema/workflow/unit/mixins/assignment.json +57 -0
- package/dist/js/schema/workflow/unit/mixins/base.json +50 -0
- package/dist/js/schema/workflow/unit/mixins/condition.json +61 -0
- package/dist/js/schema/workflow/unit/mixins/execution.json +1998 -0
- package/dist/js/schema/workflow/unit/mixins/io.json +131 -0
- package/dist/js/schema/workflow/unit/mixins/map.json +60 -0
- package/dist/js/schema/workflow/unit/mixins/processing.json +27 -0
- package/dist/js/schema/workflow/unit/mixins/reduce.json +43 -0
- package/dist/js/schema/workflow/unit/mixins/subworkflow.json +11 -0
- package/dist/js/schema/workflow/unit/reduce.json +117 -160
- package/dist/js/schema/workflow/unit/subworkflow.json +91 -134
- package/dist/js/schema/workflow/unit.json +285 -2477
- package/dist/js/schema/workflow.json +3684 -4422
- package/dist/js/schemas.json +1 -1
- package/dist/js/scripts/compileTs.js +1 -1
- package/dist/js/scripts/setSchemaIds.js +2 -1
- package/dist/js/types.d.ts +27163 -15301
- package/dist/js/types.js +5 -5
- package/dist/js/utils/ajv.js +5 -4
- package/dist/js/utils/common.js +3 -2
- package/dist/js/utils/filesystem.js +3 -2
- package/example/material.json +7 -1
- package/example/model.json +2 -1
- package/example/software/application.json +1 -0
- package/example/software/executable.json +3 -4
- package/example/software/flavor.json +9 -2
- package/example/software/template.json +5 -8
- package/example/software_directory/modeling/espresso.json +2 -1
- package/example/software_directory/modeling/nwchem.json +4 -2
- package/example/software_directory/modeling/unit/execution.json +17 -2
- package/example/software_directory/modeling/vasp.json +2 -1
- package/example/software_directory/scripting/jupyter-lab.json +2 -1
- package/example/software_directory/scripting/python.json +2 -1
- package/example/software_directory/scripting/shell.json +2 -1
- package/example/software_directory/scripting/unit/execution.json +17 -2
- package/example/system/runtime_items.json +14 -0
- package/example/workflow/unit/assignment.json +5 -1
- package/example/workflow/unit/condition.json +5 -1
- package/example/workflow/unit/execution.json +7 -3
- package/example/workflow/unit/io/api.json +1 -0
- package/example/workflow/unit/io/db_collection.json +5 -0
- package/example/workflow/unit/io/db_ids.json +6 -0
- package/example/workflow/unit/io/object_storage.json +2 -1
- package/example/workflow/unit/io.json +9 -29
- package/example/workflow/unit/map.json +5 -1
- package/example/workflow/unit/reduce.json +5 -1
- package/example/workflow.json +6 -1
- package/package.json +2 -1
- package/schema/apse/file/applications/espresso/7.2/pw.x/atomic_species.json +6 -1
- package/schema/context_providers_directory/by_application/nwchem_total_energy_context_provider.json +7 -1
- package/schema/context_providers_directory/by_application/qe_neb_context_provider.json +12 -6
- package/schema/context_providers_directory/by_application/qe_pwx_context_provider.json +10 -1
- package/schema/context_providers_directory/by_application/vasp_context_provider.json +7 -1
- package/schema/context_providers_directory/by_application/vasp_neb_context_provider.json +7 -1
- package/schema/context_providers_directory/collinear_magnetization_context_provider.json +18 -4
- package/schema/context_providers_directory/non_collinear_magnetization_context_provider.json +7 -0
- package/schema/context_providers_directory/points_grid_data_provider.json +24 -7
- package/schema/context_providers_directory/points_path_data_provider.json +7 -3
- package/schema/context_providers_directory/points_path_data_provider_rendering.json +32 -0
- package/schema/job/base.json +4 -5
- package/schema/job/compute.json +1 -1
- package/schema/job/compute_property.json +15 -0
- package/schema/material/material_properties.json +65 -0
- package/schema/material/metadata/boundary_conditions.json +24 -0
- package/schema/material/metadata/bulk_properties.json +13 -0
- package/schema/material/metadata/slab_properties.json +41 -0
- package/schema/material/metadata.json +27 -0
- package/schema/material.json +5 -57
- package/schema/method.json +7 -1
- package/schema/model.json +0 -1
- package/schema/models_directory/legacy/any.json +20 -0
- package/schema/models_directory/legacy/dft.json +63 -12
- package/schema/models_directory/legacy/ml.json +10 -7
- package/schema/models_directory/legacy/unknown.json +10 -7
- package/schema/software/application.json +4 -35
- package/schema/software/application_properties.json +68 -0
- package/schema/software/executable.json +5 -23
- package/schema/software/executable_properties.json +24 -0
- package/schema/software/flavor.json +6 -28
- package/schema/software/flavor_properties.json +33 -0
- package/schema/software/template.json +2 -26
- package/schema/software/template_properties.json +44 -0
- package/schema/system/bankable.json +5 -1
- package/schema/system/creator.json +4 -1
- package/schema/system/creator_account.json +4 -1
- package/schema/system/in_set.json +4 -1
- package/schema/system/name.json +4 -1
- package/schema/system/owner.json +4 -1
- package/schema/system/runtime_item.json +17 -0
- package/schema/system/runtime_items.json +42 -0
- package/schema/workflow/base.json +17 -17
- package/schema/workflow/subworkflow/mixin.json +48 -0
- package/schema/workflow/subworkflow/unit.json +0 -6
- package/schema/workflow/subworkflow.json +4 -31
- package/schema/workflow/unit/assertion.json +2 -16
- package/schema/workflow/unit/assignment.json +2 -34
- package/schema/workflow/unit/base.json +6 -51
- package/schema/workflow/unit/condition.json +2 -38
- package/schema/workflow/unit/context/_base.json +20 -0
- package/schema/workflow/unit/context/_extra_data_material_hash.json +14 -0
- package/schema/workflow/unit/context/item/boundaryConditions.json +27 -0
- package/schema/workflow/unit/context/item/collinearMagnetization.json +27 -0
- package/schema/workflow/unit/context/item/cutoffs.json +20 -0
- package/schema/workflow/unit/context/item/dynamics.json +20 -0
- package/schema/workflow/unit/context/item/grid.json +31 -0
- package/schema/workflow/unit/context/item/hubbard_j.json +20 -0
- package/schema/workflow/unit/context/item/hubbard_legacy.json +20 -0
- package/schema/workflow/unit/context/item/hubbard_u.json +27 -0
- package/schema/workflow/unit/context/item/hubbard_v.json +20 -0
- package/schema/workflow/unit/context/item/input.json +47 -0
- package/schema/workflow/unit/context/item/mlSettings.json +20 -0
- package/schema/workflow/unit/context/item/mlTrainTestSplit.json +20 -0
- package/schema/workflow/unit/context/item/neb.json +20 -0
- package/schema/workflow/unit/context/item/nonCollinearMagnetization.json +27 -0
- package/schema/workflow/unit/context/item/path.json +33 -0
- package/schema/workflow/unit/context/item.json +55 -0
- package/schema/workflow/unit/execution.json +4 -25
- package/schema/workflow/unit/input/_input.json +1 -1
- package/schema/workflow/unit/input/_inputItem.json +9 -9
- package/schema/workflow/unit/input/_inputItemId.json +3 -1
- package/schema/workflow/unit/io/api.json +6 -2
- package/schema/workflow/unit/io/db_collection.json +24 -0
- package/schema/workflow/unit/io/db_ids.json +22 -0
- package/schema/workflow/unit/io/object_storage.json +6 -2
- package/schema/workflow/unit/io.json +2 -39
- package/schema/workflow/unit/map.json +2 -53
- package/schema/workflow/unit/mixins/assertion.json +23 -0
- package/schema/workflow/unit/mixins/assignment.json +42 -0
- package/schema/workflow/unit/mixins/base.json +50 -0
- package/schema/workflow/unit/mixins/condition.json +46 -0
- package/schema/workflow/unit/mixins/execution.json +49 -0
- package/schema/workflow/unit/mixins/io.json +46 -0
- package/schema/workflow/unit/mixins/map.json +61 -0
- package/schema/workflow/unit/{processing.json → mixins/processing.json} +3 -7
- package/schema/workflow/unit/mixins/reduce.json +44 -0
- package/schema/workflow/unit/mixins/subworkflow.json +12 -0
- package/schema/workflow/unit/reduce.json +2 -36
- package/schema/workflow/unit/subworkflow.json +4 -6
- package/schema/workflow/unit.json +1 -19
- package/schema/workflow.json +19 -15
- package/src/html/index.html +2 -1
- package/src/js/esse/JSONSchemasGenerator.ts +2 -1
- package/src/js/esse/JSONSchemasInterface.ts +1 -1
- package/src/js/esse/schemaUtils.ts +1 -1
- package/src/js/esse/server/utils.ts +82 -0
- package/src/js/esse/utils.ts +0 -74
- package/src/js/scripts/compileTs.ts +1 -1
- package/src/js/scripts/setSchemaIds.ts +1 -0
- package/src/js/utils/ajv.ts +1 -1
- package/dist/js/example/workflow/unit/io/db.json +0 -15
- package/dist/js/example/workflow/unit/processing.json +0 -13
- package/dist/js/schema/workflow/unit/io/db.json +0 -40
- package/dist/js/schema/workflow/unit/processing.json +0 -242
- package/example/workflow/unit/io/db.json +0 -15
- package/example/workflow/unit/processing.json +0 -13
- package/schema/workflow/unit/io/db.json +0 -40
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package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json
CHANGED
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"$schema": "http://json-schema.org/draft-07/schema#",
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"description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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"description": "The path to the working directory of this job, when the job originates from command-line",
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"_project": {
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "entity reference schema",
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"type": "object",
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"_material": {
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"title": "entity reference schema",
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"type": "object",
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"properties": {
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"_id": {
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@@ -2,7 +2,7 @@
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"$id": "job/compute",
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "compute arguments schema",
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"description": "
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"description": "Compute schema",
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"type": "object",
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"required": [
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"queue",
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@@ -0,0 +1,182 @@
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{
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"$id": "job/compute-property",
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "Compute Property Schema",
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"type": "object",
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"required": [
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"compute"
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],
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"properties": {
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"compute": {
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "compute arguments schema",
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"description": "Compute schema",
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"type": "object",
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"required": [
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"queue",
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"nodes",
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"ppn",
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"timeLimit"
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],
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"properties": {
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"queue": {
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"description": "Name of the submission queues: https://docs.mat3ra.com/infrastructure/resource/queues/. Below enums are for Azure, then AWS circa 2022-08, hence the duplication.",
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"type": "string",
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"enum": [
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"D",
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"OR",
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"OF",
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"OFplus",
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"SR",
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"SF",
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"SFplus",
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"OR4",
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"OR8",
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"OR16",
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"SR4",
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"SR8",
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"SR16",
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"GOF",
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"G4OF",
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"G8OF",
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"GSF",
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"G4SF",
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"G8SF"
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|
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]
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},
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"nodes": {
|
|
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"description": "number of nodes used for the job inside the RMS.",
|
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"type": "integer"
|
|
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},
|
|
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|
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"ppn": {
|
|
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|
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"description": "number of CPUs used for the job inside the RMS.",
|
|
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"type": "integer"
|
|
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|
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},
|
|
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"timeLimit": {
|
|
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|
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"description": "Wallclock time limit for computing a job. Clock format: 'hh:mm:ss'",
|
|
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|
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"type": "string"
|
|
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|
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},
|
|
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|
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"timeLimitType": {
|
|
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|
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"description": "Convention to use when reasoning about time limits",
|
|
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|
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"type": "string",
|
|
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|
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"default": "per single attempt",
|
|
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|
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"enum": [
|
|
64
|
+
"per single attempt",
|
|
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|
+
"compound"
|
|
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|
+
]
|
|
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|
+
},
|
|
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|
+
"isRestartable": {
|
|
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|
+
"description": "Job is allowed to restart on termination.",
|
|
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|
+
"type": "boolean",
|
|
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|
+
"default": true
|
|
72
|
+
},
|
|
73
|
+
"notify": {
|
|
74
|
+
"description": "Email notification for the job: n - never, a - job aborted, b - job begins, e - job ends. Last three could be combined.",
|
|
75
|
+
"type": "string"
|
|
76
|
+
},
|
|
77
|
+
"email": {
|
|
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|
+
"description": "Email address to notify about job execution.",
|
|
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|
+
"type": "string"
|
|
80
|
+
},
|
|
81
|
+
"maxCPU": {
|
|
82
|
+
"description": "Maximum CPU count per node. This parameter is used to let backend job submission infrastructure know that this job is to be charged for the maximum CPU per node instead of the actual ppn. For premium/fast queues where resources are provisioned on-demand and exclusively per user.",
|
|
83
|
+
"type": "integer"
|
|
84
|
+
},
|
|
85
|
+
"arguments": {
|
|
86
|
+
"description": "Optional arguments specific to using application - VASP, Quantum Espresso, etc. Specified elsewhere",
|
|
87
|
+
"default": {},
|
|
88
|
+
"$schema": "http://json-schema.org/draft-07/schema#",
|
|
89
|
+
"title": "quantum espresso arguments schema",
|
|
90
|
+
"type": "object",
|
|
91
|
+
"additionalProperties": false,
|
|
92
|
+
"properties": {
|
|
93
|
+
"nimage": {
|
|
94
|
+
"description": "Processors can be divided into different `images`, each corresponding to a different self-consistent or linear-response calculation, loosely coupled to others.",
|
|
95
|
+
"type": "integer",
|
|
96
|
+
"default": 1,
|
|
97
|
+
"minimum": 1,
|
|
98
|
+
"maximum": 100
|
|
99
|
+
},
|
|
100
|
+
"npools": {
|
|
101
|
+
"description": "Each image can be subpartitioned into `pools`, each taking care of a group of k-points.",
|
|
102
|
+
"type": "integer",
|
|
103
|
+
"default": 1,
|
|
104
|
+
"minimum": 1,
|
|
105
|
+
"maximum": 100
|
|
106
|
+
},
|
|
107
|
+
"nband": {
|
|
108
|
+
"description": "Each pool is subpartitioned into `band groups`, each taking care of a group of Kohn-Sham orbitals (also called bands, or wavefunctions).",
|
|
109
|
+
"type": "integer",
|
|
110
|
+
"default": 1,
|
|
111
|
+
"minimum": 1,
|
|
112
|
+
"maximum": 100
|
|
113
|
+
},
|
|
114
|
+
"ntg": {
|
|
115
|
+
"description": "In order to allow good parallelization of the 3D FFT when the number of processors exceeds the number of FFT planes, FFTs on Kohn-Sham states are redistributed to `task` groups so that each group can process several wavefunctions at the same time.",
|
|
116
|
+
"type": "integer",
|
|
117
|
+
"default": 1,
|
|
118
|
+
"minimum": 1,
|
|
119
|
+
"maximum": 100
|
|
120
|
+
},
|
|
121
|
+
"ndiag": {
|
|
122
|
+
"description": "A further level of parallelization, independent on PW or k-point parallelization, is the parallelization of subspace diagonalization / iterative orthonormalization. Both operations required the diagonalization of arrays whose dimension is the number of Kohn-Sham states (or a small multiple of it). All such arrays are distributed block-like across the `linear-algebra group`, a subgroup of the pool of processors, organized in a square 2D grid. As a consequence the number of processors in the linear-algebra group is given by n2, where n is an integer; n2 must be smaller than the number of processors in the PW group. The diagonalization is then performed in parallel using standard linear algebra operations.",
|
|
123
|
+
"type": "integer",
|
|
124
|
+
"default": 1,
|
|
125
|
+
"minimum": 1,
|
|
126
|
+
"maximum": 100
|
|
127
|
+
}
|
|
128
|
+
}
|
|
129
|
+
},
|
|
130
|
+
"cluster": {
|
|
131
|
+
"description": "Cluster where the job is executed. Optional on create. Required on job submission.",
|
|
132
|
+
"type": "object",
|
|
133
|
+
"properties": {
|
|
134
|
+
"fqdn": {
|
|
135
|
+
"description": "FQDN of the cluster. e.g. master-1-staging.exabyte.io",
|
|
136
|
+
"type": "string"
|
|
137
|
+
},
|
|
138
|
+
"jid": {
|
|
139
|
+
"description": "Job's identity in RMS. e.g. 1234.master-1-staging.exabyte.io",
|
|
140
|
+
"type": "string"
|
|
141
|
+
}
|
|
142
|
+
}
|
|
143
|
+
},
|
|
144
|
+
"errors": {
|
|
145
|
+
"description": "Computation error. Optional. Appears only if something happens on jobs execution.",
|
|
146
|
+
"type": "array",
|
|
147
|
+
"items": {
|
|
148
|
+
"type": "object",
|
|
149
|
+
"properties": {
|
|
150
|
+
"domain": {
|
|
151
|
+
"description": "Domain of the error appearance (internal).",
|
|
152
|
+
"type": "string",
|
|
153
|
+
"enum": [
|
|
154
|
+
"rupy",
|
|
155
|
+
"alfred",
|
|
156
|
+
"celim",
|
|
157
|
+
"webapp"
|
|
158
|
+
]
|
|
159
|
+
},
|
|
160
|
+
"reason": {
|
|
161
|
+
"description": "Should be a short, unique, machine-readable error code string. e.g. FileNotFound",
|
|
162
|
+
"type": "string"
|
|
163
|
+
},
|
|
164
|
+
"message": {
|
|
165
|
+
"description": "Human-readable error message. e.g. 'File Not Found: /home/demo/data/project1/job-123/job-config.json'",
|
|
166
|
+
"type": "string"
|
|
167
|
+
},
|
|
168
|
+
"traceback": {
|
|
169
|
+
"description": "Full machine-readable error traceback. e.g. FileNotFound",
|
|
170
|
+
"type": "string"
|
|
171
|
+
}
|
|
172
|
+
}
|
|
173
|
+
}
|
|
174
|
+
},
|
|
175
|
+
"excludeFilesPattern": {
|
|
176
|
+
"description": "A Python compatible regex to exclude files from upload. e.g. ^.*.txt& excludes all files with .txt suffix",
|
|
177
|
+
"type": "string"
|
|
178
|
+
}
|
|
179
|
+
}
|
|
180
|
+
}
|
|
181
|
+
}
|
|
182
|
+
}
|