@jokerized/getresearchdone 0.4.1

package/dist/lib/discussion.js.map

@@ -0,0 +1 @@
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package/dist/lib/drift.d.ts

@@ -0,0 +1,36 @@
+export interface ComponentResult {
+    /** Drift score for this component, in [0, 1]. 0 = no drift. */
+    score: number;
+    /** True if there was enough data to compute a meaningful score. */
+    sufficient_data: boolean;
+    /** Human-readable reason when sufficient_data is false. */
+    reason?: string;
+    /** Component-specific structured detail for the caller to surface. */
+    detail?: Record<string, unknown>;
+}
+export interface DriftWeights {
+    goal: number;
+    constraint: number;
+    ontology: number;
+}
+export declare const DEFAULT_WEIGHTS: DriftWeights;
+export interface DriftScore {
+    weighted: number;
+    threshold: number;
+    exceeded: boolean;
+    weights: DriftWeights;
+    goal: ComponentResult;
+    constraint: ComponentResult;
+    ontology: ComponentResult;
+}
+export interface ConvergenceResult {
+    /** True if baseline/recent vocab are similar enough to declare convergence. */
+    converged: boolean;
+    /** Similarity = 1 - ontology_drift. Present when converged === true. */
+    similarity?: number;
+    /** Threshold used. */
+    threshold: number;
+    /** Why convergence was not declared, when converged === false. */
+    reason?: string;
+}
+//# sourceMappingURL=drift.d.ts.map

package/dist/lib/drift.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/drift.js

@@ -0,0 +1,481 @@
+'use strict';
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DEFAULT_WEIGHTS = void 0;
+/**
+ * GRD project-drift score.
+ *
+ * Tier-2 #7 of the Ouroboros integration. The proposal required
+ * concrete data sources before shipping a weighted formula; this
+ * module supplies them:
+ *
+ *   goal       — ROADMAP.md phase Title+Description+Scope tokens
+ *                vs SUMMARY.md ## Accomplishments tokens.
+ *                Jaccard distance, mean over recent phases.
+ *
+ *   constraint — Count of banned-phrasing occurrences (locked by
+ *                tests/integration/verifier-evidence.test.ts) in
+ *                recent {phase}-VERIFICATION.md and {phase}-SUMMARY.md
+ *                files, normalised and clamped to [0, 1].
+ *
+ *   ontology   — Vocabulary Jaccard distance between recent phases'
+ *                SUMMARY frontmatter (tech-stack.added,
+ *                patterns-established) and the baseline first phases'.
+ *
+ * Weighted aggregate: 0.5·goal + 0.3·constraint + 0.2·ontology
+ * (matches Q00 / Ouroboros). Threshold default ≤ 0.3 = healthy.
+ *
+ * All three components are pure functions of files on disk — no LLM
+ * calls, no embeddings, no network. Insufficient data → score 0 with
+ * sufficient_data: false so callers can decide what to do.
+ */
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const { planningDir: getPlanningDir } = require('./paths');
+const { safeReadFile } = require('./utils');
+const { extractFrontmatter } = require('./frontmatter');
+exports.DEFAULT_WEIGHTS = { goal: 0.5, constraint: 0.3, ontology: 0.2 };
+// ─── Tokenisation helpers ──────────────────────────────────────────────────
+/** Tokenise a string into lowercase alphanumeric word tokens of length ≥ 3. */
+function _tokens(text) {
+    const set = new Set();
+    const matches = text.toLowerCase().match(/[a-z0-9][a-z0-9_-]{2,}/g);
+    if (!matches)
+        return set;
+    for (const t of matches) {
+        if (_STOP_WORDS.has(t))
+            continue;
+        set.add(t);
+    }
+    return set;
+}
+const _STOP_WORDS = new Set([
+    'the', 'and', 'for', 'with', 'from', 'into', 'over', 'this', 'that',
+    'are', 'was', 'were', 'has', 'have', 'had', 'will', 'would', 'should',
+    'phase', 'plan', 'summary', 'roadmap', 'task', 'goal',
+]);
+/** Jaccard distance between two sets: 1 - |A∩B| / |A∪B|. 0 if both empty. */
+function _jaccardDistance(a, b) {
+    if (a.size === 0 && b.size === 0)
+        return 0;
+    let intersection = 0;
+    for (const x of a)
+        if (b.has(x))
+            intersection++;
+    const union = a.size + b.size - intersection;
+    return union === 0 ? 0 : 1 - intersection / union;
+}
+/**
+ * List completed phase directories across all milestones, sorted by
+ * the leading numeric prefix (componentwise — `01.10` > `01.9`). A
+ * phase is "completed" when it has at least one *-SUMMARY.md file.
+ */
+function _listCompletedPhases(cwd) {
+    const planning = getPlanningDir(cwd);
+    const milestones = path.join(planning, 'milestones');
+    if (!fs.existsSync(milestones))
+        return [];
+    const found = [];
+    for (const ms of fs.readdirSync(milestones, { withFileTypes: true })) {
+        if (!ms.isDirectory())
+            continue;
+        const phasesDir = path.join(milestones, ms.name, 'phases');
+        if (!fs.existsSync(phasesDir))
+            continue;
+        for (const ph of fs.readdirSync(phasesDir, { withFileTypes: true })) {
+            if (!ph.isDirectory())
+                continue;
+            const m = ph.name.match(/^(\d+(?:\.\d+)?)/);
+            if (!m)
+                continue;
+            const phaseDir = path.join(phasesDir, ph.name);
+            const hasSummary = fs
+                .readdirSync(phaseDir)
+                .some((f) => /-SUMMARY\.md$/i.test(f) || f === 'SUMMARY.md');
+            if (!hasSummary)
+                continue;
+            found.push({ phase_number: m[1], phase_dir: phaseDir });
+        }
+    }
+    found.sort((a, b) => _comparePhaseIds(a.phase_number, b.phase_number));
+    return found;
+}
+/** Componentwise phase-id comparison (matches lib/context/execute.ts). */
+function _comparePhaseIds(a, b) {
+    const pa = a.split('.').map((p) => parseInt(p, 10));
+    const pb = b.split('.').map((p) => parseInt(p, 10));
+    const n = Math.max(pa.length, pb.length);
+    for (let i = 0; i < n; i++) {
+        const ai = pa[i] ?? 0;
+        const bi = pb[i] ?? 0;
+        if (ai !== bi)
+            return ai - bi;
+    }
+    return 0;
+}
+// ─── Goal drift ────────────────────────────────────────────────────────────
+/**
+ * Extract the {Title, Scope items, Description} text for a given phase
+ * from ROADMAP.md. Returns null if the phase block cannot be found.
+ *
+ * Heading levels: GRD ROADMAPs use `## Phase` (flat), `### Phase`
+ * (milestone-grouped), or `#### Phase` (milestone-grouped under an H3
+ * version heading). All three forms are accepted. codex r3 P2: prior
+ * regex only matched `### Phase`, missing real ROADMAPs with `#### Phase`.
+ */
+function _extractRoadmapGoal(roadmap, phaseNumber) {
+    // codex r3 P2 on PR #41 (applied here for consistency): accept padded
+    // decimal phase IDs in ROADMAP headings (`Phase 06.1` vs `Phase 6.1`).
+    const trim = phaseNumber.replace(/^0+/, '') || '0';
+    const numberPattern = trim
+        .split('.')
+        .map((p) => `0*${p.replace(/^0+/, '') || '0'}`)
+        .join('\\.');
+    // Note: no `m` flag — `$` must mean end-of-input, not end-of-line, so
+    // the body capture extends to the next heading or EOF (not the very
+    // first newline). The `\n` literals in the body and the stop lookahead
+    // already provide the boundary semantics we need.
+    const re = new RegExp(`(#{2,4})\\s+Phase ${numberPattern}:[^\\n]*\\n([\\s\\S]*?)(?=\\n#{2,4}\\s+Phase\\s|\\n##[^#]|$)`, 'i');
+    const m = roadmap.match(re);
+    if (!m)
+        return null;
+    return m[0]; // heading + body together
+}
+/** Extract the `## Accomplishments` section body from a SUMMARY.md. */
+function _extractSummaryAccomplishments(summary) {
+    const m = summary.match(/##\s+Accomplishments\s*\n([\s\S]*?)(?=\n##\s|$)/i);
+    return m ? m[1] : null;
+}
+function computeGoalDrift(cwd, recentK = 3) {
+    const planning = getPlanningDir(cwd);
+    const roadmap = safeReadFile(path.join(planning, 'ROADMAP.md'));
+    if (!roadmap) {
+        return { score: 0, sufficient_data: false, reason: 'ROADMAP.md not found' };
+    }
+    const completed = _listCompletedPhases(cwd);
+    const recent = completed.slice(-recentK);
+    if (recent.length === 0) {
+        return { score: 0, sufficient_data: false, reason: 'No completed phases' };
+    }
+    const perPhase = [];
+    for (const phase of recent) {
+        const goalText = _extractRoadmapGoal(roadmap, phase.phase_number);
+        // Aggregate accomplishments from ALL SUMMARY.md files in the phase
+        // dir — phases routinely have multiple plans (e.g. 01-01-SUMMARY.md,
+        // 01-02-SUMMARY.md). codex r2 P2: prior code used .find() and read
+        // only one arbitrary summary.
+        const summaryFiles = fs
+            .readdirSync(phase.phase_dir)
+            .filter((f) => /-SUMMARY\.md$/i.test(f) || f === 'SUMMARY.md');
+        const accomplishmentChunks = [];
+        for (const sf of summaryFiles) {
+            const c = safeReadFile(path.join(phase.phase_dir, sf));
+            if (!c)
+                continue;
+            const a = _extractSummaryAccomplishments(c);
+            if (a)
+                accomplishmentChunks.push(a);
+        }
+        if (!goalText || accomplishmentChunks.length === 0) {
+            perPhase.push({ phase: phase.phase_number, distance: 0, comparable: false });
+            continue;
+        }
+        const distance = _jaccardDistance(_tokens(goalText), _tokens(accomplishmentChunks.join('\n')));
+        perPhase.push({ phase: phase.phase_number, distance, comparable: true });
+    }
+    const comparable = perPhase.filter((p) => p.comparable);
+    if (comparable.length === 0) {
+        return {
+            score: 0,
+            sufficient_data: false,
+            reason: 'No phase has both ROADMAP goal block and SUMMARY ## Accomplishments',
+            detail: { per_phase: perPhase },
+        };
+    }
+    const score = comparable.reduce((s, p) => s + p.distance, 0) / comparable.length;
+    return {
+        score,
+        sufficient_data: true,
+        detail: { per_phase: perPhase, recent_k: recentK },
+    };
+}
+// ─── Constraint drift ──────────────────────────────────────────────────────
+/**
+ * Banned phrasings from the Evidence Standard (locked by
+ * tests/integration/verifier-evidence.test.ts). Each occurrence in a
+ * recent VERIFICATION.md or SUMMARY.md counts as one constraint violation.
+ */
+const _BANNED_PHRASINGS = [
+    /\blooks good\b/i,
+    /\bseems fine\b/i,
+    /\blooks correct\b/i,
+    /\bappears to work\b/i,
+    /\bshould work\b/i,
+    /\bI verified this\b/i,
+];
+function computeConstraintDrift(cwd, recentK = 3) {
+    const completed = _listCompletedPhases(cwd);
+    const recent = completed.slice(-recentK);
+    if (recent.length === 0) {
+        return { score: 0, sufficient_data: false, reason: 'No completed phases' };
+    }
+    let violations = 0;
+    let opportunities = 0;
+    const perPhase = [];
+    for (const phase of recent) {
+        const files = fs
+            .readdirSync(phase.phase_dir)
+            .filter((f) => /-VERIFICATION\.md$/i.test(f) ||
+            f === 'VERIFICATION.md' ||
+            /-SUMMARY\.md$/i.test(f) ||
+            f === 'SUMMARY.md');
+        let phaseViolations = 0;
+        for (const f of files) {
+            const content = safeReadFile(path.join(phase.phase_dir, f)) ?? '';
+            for (const re of _BANNED_PHRASINGS) {
+                const matches = content.match(new RegExp(re.source, re.flags + 'g'));
+                if (matches)
+                    phaseViolations += matches.length;
+            }
+        }
+        perPhase.push({ phase: phase.phase_number, violations: phaseViolations, files_scanned: files.length });
+        violations += phaseViolations;
+        // Each phase × each rule is an opportunity to violate.
+        opportunities += _BANNED_PHRASINGS.length;
+    }
+    if (opportunities === 0) {
+        return { score: 0, sufficient_data: false, reason: 'No verifiable phase artifacts' };
+    }
+    // Clamp to [0, 1]. A single phase with N rule-violations contributes
+    // N/RULES to its slot, capped so a degenerate file cannot dominate.
+    const raw = violations / opportunities;
+    const score = Math.min(1, raw);
+    return {
+        score,
+        sufficient_data: true,
+        detail: { per_phase: perPhase, violations, opportunities, recent_k: recentK },
+    };
+}
+// ─── Ontology drift ────────────────────────────────────────────────────────
+/**
+ * Extract the vocabulary set for one phase from its SUMMARY.md
+ * frontmatter via the shared extractFrontmatter parser. Supports the
+ * three shapes seen in the wild:
+ *
+ *   tech_stack:   (canonical — used by recent planner output)
+ *     added: [...]
+ *     patterns: [...]
+ *   tech-stack:   (legacy / test fixtures — hyphenated)
+ *     added: [...]
+ *     patterns: [...]
+ *   tech-stack:   (older fixtures — `patterns-established` instead of `patterns`)
+ *     added: [...]
+ *     patterns-established: [...]
+ *
+ * Block-list and inline-list forms are both handled by extractFrontmatter.
+ * codex r2 P2: prior regex-only extractor missed `tech_stack` and
+ * block-list shapes entirely, producing false high drift.
+ */
+function _extractPhaseVocab(summaryContent) {
+    const vocab = new Set();
+    const fm = extractFrontmatter(summaryContent);
+    // Source 1: nested tech_stack / tech-stack section
+    const sections = [fm['tech_stack'], fm['tech-stack']];
+    for (const sec of sections) {
+        if (!sec || typeof sec !== 'object')
+            continue;
+        const obj = sec;
+        for (const fieldName of ['added', 'patterns', 'patterns-established', 'patterns_established']) {
+            const arr = obj[fieldName];
+            if (!Array.isArray(arr))
+                continue;
+            for (const item of arr) {
+                if (typeof item !== 'string')
+                    continue;
+                const v = item.trim();
+                if (v)
+                    vocab.add(v.toLowerCase());
+            }
+        }
+    }
+    // Source 2: top-level patterns-established (real GRD summaries shape).
+    // codex r3 P2: previously ignored, which dropped a documented data
+    // source. Also accept the underscore variant for symmetry.
+    for (const topKey of ['patterns-established', 'patterns_established']) {
+        const arr = fm[topKey];
+        if (!Array.isArray(arr))
+            continue;
+        for (const item of arr) {
+            if (typeof item !== 'string')
+                continue;
+            const v = item.trim();
+            if (v)
+                vocab.add(v.toLowerCase());
+        }
+    }
+    return vocab;
+}
+function computeOntologyDrift(cwd, recentK = 3, baselineK = 3) {
+    const completed = _listCompletedPhases(cwd);
+    if (completed.length < 2) {
+        return {
+            score: 0,
+            sufficient_data: false,
+            reason: `Need at least 2 completed phases for ontology drift (have ${completed.length})`,
+        };
+    }
+    // baseline = first baselineK phases; recent = last recentK phases.
+    // If the project has only a handful of phases, baseline and recent may
+    // overlap — that is acceptable: the score just trends toward 0.
+    const baselinePhases = completed.slice(0, baselineK);
+    const recentPhases = completed.slice(-recentK);
+    // Aggregate vocab across ALL SUMMARY.md files in each phase (a phase
+    // can have multiple plans). codex r2 P2: prior code used .find() and
+    // sampled only one summary, making the score sensitive to filesystem
+    // order rather than the whole phase output.
+    const collectVocab = (phases) => {
+        const v = new Set();
+        for (const p of phases) {
+            const summaryFiles = fs
+                .readdirSync(p.phase_dir)
+                .filter((f) => /-SUMMARY\.md$/i.test(f) || f === 'SUMMARY.md');
+            for (const sf of summaryFiles) {
+                const content = safeReadFile(path.join(p.phase_dir, sf));
+                if (!content)
+                    continue;
+                for (const term of _extractPhaseVocab(content))
+                    v.add(term);
+            }
+        }
+        return v;
+    };
+    const baselineVocab = collectVocab(baselinePhases);
+    const recentVocab = collectVocab(recentPhases);
+    if (baselineVocab.size === 0 || recentVocab.size === 0) {
+        return {
+            score: 0,
+            sufficient_data: false,
+            reason: 'No tech-stack/patterns-established vocab extractable from SUMMARYs',
+            detail: { baseline_size: baselineVocab.size, recent_size: recentVocab.size },
+        };
+    }
+    let intersection = 0;
+    for (const t of recentVocab)
+        if (baselineVocab.has(t))
+            intersection++;
+    const union = baselineVocab.size + recentVocab.size - intersection;
+    const score = union === 0 ? 0 : 1 - intersection / union;
+    return {
+        score,
+        sufficient_data: true,
+        detail: {
+            baseline_size: baselineVocab.size,
+            recent_size: recentVocab.size,
+            intersection,
+            union,
+            recent_k: recentK,
+            baseline_k: baselineK,
+        },
+    };
+}
+/**
+ * Check whether ontology has converged: similarity (1 - drift) >= threshold,
+ * AND the baseline/recent windows are NON-OVERLAPPING (so similarity is a
+ * real measurement, not the trivial "same set" 1.0). Used by autopilot's
+ * opt-in termination criterion (Tier-3 #10 of the Ouroboros integration).
+ *
+ * codex r1 P2 on PR #40: prior wiring used computeOntologyDrift directly,
+ * which reports sufficient_data with only 2 completed phases. With default
+ * K=3 baseline + K=3 recent, the windows overlap entirely for any project
+ * with <= 3 completed phases, producing similarity 1.0 regardless of actual
+ * vocab change. This helper requires `completed_phases >= 2 * recentK`
+ * (default 6) before declaring convergence.
+ */
+function isOntologyConverged(cwd, threshold = 0.95, recentK = 3) {
+    const completed = _listCompletedPhases(cwd);
+    if (completed.length < 2 * recentK) {
+        return {
+            converged: false,
+            threshold,
+            reason: `Need >= ${2 * recentK} completed phases for non-overlapping ontology windows (have ${completed.length})`,
+        };
+    }
+    const drift = computeOntologyDrift(cwd, recentK, recentK);
+    if (!drift.sufficient_data) {
+        return { converged: false, threshold, reason: drift.reason ?? 'insufficient drift data' };
+    }
+    const similarity = 1 - drift.score;
+    if (similarity < threshold) {
+        return {
+            converged: false,
+            threshold,
+            reason: `similarity ${similarity.toFixed(3)} < ${threshold}`,
+        };
+    }
+    return { converged: true, similarity, threshold };
+}
+// ─── Aggregator ────────────────────────────────────────────────────────────
+/**
+ * Compute the weighted drift score. Each component is computed
+ * independently; if a component reports sufficient_data: false, its
+ * score contributes 0 to the weighted aggregate (so the absence of
+ * data is treated as "no drift", not "max drift").
+ */
+function computeDriftScore(cwd, weights = exports.DEFAULT_WEIGHTS, threshold = 0.3, recentK = 3) {
+    const goal = computeGoalDrift(cwd, recentK);
+    const constraint = computeConstraintDrift(cwd, recentK);
+    const ontology = computeOntologyDrift(cwd, recentK);
+    const weighted = weights.goal * goal.score +
+        weights.constraint * constraint.score +
+        weights.ontology * ontology.score;
+    return {
+        weighted,
+        threshold,
+        exceeded: weighted > threshold,
+        weights,
+        goal,
+        constraint,
+        ontology,
+    };
+}
+module.exports = {
+    computeGoalDrift,
+    computeConstraintDrift,
+    computeOntologyDrift,
+    computeDriftScore,
+    isOntologyConverged,
+    DEFAULT_WEIGHTS: exports.DEFAULT_WEIGHTS,
+};
+//# sourceMappingURL=drift.js.map

package/dist/lib/drift.js.map

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package/dist/lib/evolve/_dimensions-features.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=_dimensions-features.d.ts.map

package/dist/lib/evolve/_dimensions-features.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"_dimensions-features.d.ts","sourceRoot":"","sources":["../../../lib/evolve/_dimensions-features.ts"],"names":[],"mappings":""}