@jokerized/getresearchdone 0.4.1

package/dist/lib/commands/quality.js

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+'use strict';
+Object.defineProperty(exports, "__esModule", { value: true });
+/** GRD Commands/Quality -- Quality analysis and plugin setup operations */
+const fs = require('fs');
+const path = require('path');
+const { output, error, } = require('../utils');
+const { runQualityAnalysis, } = require('../cleanup');
+// ─── Helpers ─────────────────────────────────────────────────────────────────
+/** Extract --flag value from args array. */
+function flag(args, name, fallback) {
+    const i = args.indexOf(name);
+    return i !== -1 && i + 1 < args.length ? args[i + 1] : fallback;
+}
+// ─── Quality Analysis ────────────────────────────────────────────────────────
+/** Run quality analysis for a phase. */
+function cmdQualityAnalysis(cwd, args, raw) {
+    const phaseNum = flag(args, '--phase');
+    if (!phaseNum) {
+        error('--phase flag required for quality-analysis. Usage: quality-analysis --phase <phase-number>. Add the --phase flag, e.g.: quality-analysis --phase 2');
+        return;
+    }
+    const report = runQualityAnalysis(cwd, phaseNum);
+    if (report.skipped) {
+        output(report, raw, report.reason);
+        return;
+    }
+    const lines = [
+        `Quality Analysis - Phase ${report.phase}`,
+        `Date: ${report.timestamp}`,
+        '',
+        `Total issues: ${report.summary?.total_issues}`,
+        `  Complexity violations: ${report.summary?.complexity_violations}`,
+        `  Dead exports: ${report.summary?.dead_exports}`,
+        `  Oversized files: ${report.summary?.oversized_files}`,
+    ];
+    if (report.details?.complexity && report.details.complexity.length > 0) {
+        lines.push('', 'Complexity Violations:');
+        for (const v of report.details.complexity)
+            lines.push(`  ${v.file}:${v.line} - ${v.functionName} (complexity: ${v.complexity})`);
+    }
+    if (report.details?.dead_exports && report.details.dead_exports.length > 0) {
+        lines.push('', 'Dead Exports:');
+        for (const v of report.details.dead_exports)
+            lines.push(`  ${v.file} - ${v.exportName}`);
+    }
+    if (report.details?.file_size && report.details.file_size.length > 0) {
+        lines.push('', 'Oversized Files:');
+        for (const v of report.details.file_size)
+            lines.push(`  ${v.file} - ${v.lines} lines (threshold: ${v.threshold})`);
+    }
+    output(report, raw, lines.join('\n'));
+}
+// ─── Setup ──────────────────────────────────────────────────────────────────
+/** Output plugin configuration info for registering GRD as a Claude Code plugin. */
+function cmdSetup(_cwd, raw) {
+    const packageRoot = path.resolve(__dirname, '..', '..');
+    const pluginJsonPath = path.join(packageRoot, '.claude-plugin', 'plugin.json');
+    if (!fs.existsSync(pluginJsonPath)) {
+        error('GRD installation not found. Run this command from a valid GRD installation.');
+        return;
+    }
+    const pluginDir = path.join(packageRoot, '.claude-plugin');
+    const result = {
+        package_root: packageRoot,
+        plugin_json: pluginJsonPath,
+        instructions: `Add to Claude Code settings:\n  "plugin_path": "${pluginDir}"`,
+    };
+    const rawText = [
+        'GRD plugin configured.',
+        `Package root: ${packageRoot}`,
+        `Plugin config: ${pluginJsonPath}`,
+        '',
+        'To use with Claude Code, add this plugin path to your Claude Code configuration:',
+        `  ${pluginDir}`,
+    ].join('\n');
+    output(result, raw, rawText);
+}
+// ─── Exports ─────────────────────────────────────────────────────────────────
+module.exports = { cmdQualityAnalysis, cmdSetup };
+//# sourceMappingURL=quality.js.map

package/dist/lib/commands/quality.js.map

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package/dist/lib/commands/rollback.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=rollback.d.ts.map

package/dist/lib/commands/rollback.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/commands/rollback.js

@@ -0,0 +1,145 @@
+'use strict';
+Object.defineProperty(exports, "__esModule", { value: true });
+/** GRD Commands/Rollback -- Generate phase undo plan from git history */
+const fs = require('fs');
+const path = require('path');
+const { output, error, execGit, } = require('../utils');
+const { planningDir: getPlanningDir, } = require('../paths');
+// ─── Rollback ────────────────────────────────────────────────────────────────
+/**
+ * CLI command: Generate a safe undo plan for a completed phase.
+ *
+ * Reads git log for the branch named `grd/phase-{N}`, finds the merge commit SHA,
+ * generates `git revert` commands, and writes a step-by-step undo plan to
+ * `.planning/rollback-plan.md`. Optionally updates phase status to `rolled-back`.
+ * Never executes any git operations — output only.
+ *
+ * @param cwd - Project working directory
+ * @param phase - Phase number (e.g., "3" or "03")
+ * @param raw - Output raw text instead of JSON
+ */
+function cmdRollback(cwd, phase, raw) {
+    if (!phase) {
+        error('phase required. Usage: gd rollback <phase>');
+        return;
+    }
+    // Codex r10 P2: derive the branch name from the configured
+    // phase_branch_template (default `grd/{milestone}/{phase}-{slug}`).
+    // The legacy hardcoded `grd/phase-${phase}` matched nothing in
+    // current projects.
+    const { loadConfig } = require('../utils');
+    const { findPhaseInternal } = require('../utils');
+    const { currentMilestone: currentMilestoneFn } = require('../paths');
+    const cfg = loadConfig(cwd);
+    const template = cfg.phase_branch_template || 'grd/{milestone}/{phase}-{slug}';
+    const phaseInfo = findPhaseInternal(cwd, phase);
+    let ms = '';
+    try {
+        ms = currentMilestoneFn(cwd);
+    }
+    catch {
+        /* milestone may not be set; template can still fill phase */
+    }
+    const slug = phaseInfo?.phase_slug ?? '';
+    const phaseNum = phaseInfo?.phase_number ?? phase;
+    const branchName = template
+        .replace('{milestone}', ms)
+        .replace('{phase}', phaseNum)
+        .replace('{slug}', slug)
+        .replace(/\/+/g, '/')
+        .replace(/-+$/, '');
+    // Find merge commit for the phase branch
+    const logResult = execGit(cwd, [
+        'log',
+        '--oneline',
+        '--merges',
+        '--all',
+        `--grep=Merge.*${branchName}`,
+        '-10',
+    ], { allowBlocked: true });
+    let mergeSha = null;
+    let isConfirmedMerge = false;
+    if (logResult.exitCode === 0 && logResult.stdout.trim()) {
+        const firstLine = logResult.stdout.trim().split('\n')[0];
+        mergeSha = firstLine.split(' ')[0] || null;
+        if (mergeSha)
+            isConfirmedMerge = true;
+    }
+    // Fallback: look for branch tip SHA. Not necessarily a merge commit.
+    if (!mergeSha) {
+        const branchResult = execGit(cwd, ['rev-parse', '--verify', `${branchName}`], { allowBlocked: true });
+        if (branchResult.exitCode === 0 && branchResult.stdout.trim()) {
+            mergeSha = branchResult.stdout.trim();
+        }
+    }
+    // Codex r6 P2: `git revert -m 1 <sha>` already creates the revert
+    // commit (no --no-commit), so the prior `git commit --no-edit` would
+    // fail with "nothing to commit". Also, `-m 1` is invalid for
+    // non-merge commits, so the branch-tip fallback path needs a
+    // different command shape.
+    const revertCommands = [];
+    if (mergeSha && isConfirmedMerge) {
+        revertCommands.push(`git revert -m 1 --no-edit ${mergeSha}  # Revert merge of ${branchName}`);
+    }
+    else if (mergeSha) {
+        revertCommands.push(`# Branch tip ${mergeSha} may not be a merge commit. If it is, add \`-m 1\`:`);
+        revertCommands.push(`git revert --no-edit ${mergeSha}  # Revert tip of ${branchName}`);
+    }
+    else {
+        revertCommands.push(`# Could not locate merge commit for ${branchName}`);
+        revertCommands.push(`# Manual steps: git log --oneline --merges --all | grep "${branchName}"`);
+        revertCommands.push(`# Then: git revert -m 1 --no-edit <sha>`);
+    }
+    // Write rollback plan to .planning/rollback-plan.md
+    const planningDir = getPlanningDir(cwd);
+    const rollbackPlanPath = path.join(planningDir, 'rollback-plan.md');
+    let writtenPath = null;
+    const today = new Date().toISOString().split('T')[0];
+    const planContent = [
+        `# Rollback Plan — Phase ${phase}`,
+        ``,
+        `Generated: ${today}`,
+        `Branch: \`${branchName}\``,
+        `Merge SHA: ${mergeSha ?? '(not found — see manual steps below)'}`,
+        ``,
+        `## Steps`,
+        ``,
+        `1. Ensure your working tree is clean: \`git status\``,
+        `2. Switch to the integration branch: \`git checkout main\` (or your base branch)`,
+        `3. Run the revert commands below:`,
+        ``,
+        revertCommands.map((c) => `   \`\`\`\n   ${c}\n   \`\`\``).join('\n'),
+        ``,
+        `4. Verify tests pass: \`npm test\``,
+        `5. Update STATE.md phase ${phase} status to \`rolled-back\``,
+        ``,
+        `## Notes`,
+        ``,
+        `- This plan was generated automatically and does not execute any git operations.`,
+        `- Always review the revert diff before committing.`,
+        `- If the merge SHA is missing, locate it with: \`git log --oneline --merges --all\``,
+    ].join('\n');
+    try {
+        fs.mkdirSync(planningDir, { recursive: true });
+        fs.writeFileSync(rollbackPlanPath, planContent, 'utf-8');
+        writtenPath = path.relative(cwd, rollbackPlanPath);
+    }
+    catch {
+        // Non-fatal — output result anyway
+    }
+    const result = {
+        phase,
+        branch: branchName,
+        merge_sha: mergeSha,
+        revert_commands: revertCommands,
+        rollback_plan_path: writtenPath,
+        note: 'No git operations were executed. Review the plan before running revert commands.',
+    };
+    const summary = mergeSha
+        ? `Rollback plan for phase ${phase}: revert ${mergeSha}`
+        : `Rollback plan for phase ${phase}: merge SHA not found — manual steps generated`;
+    output(result, raw, summary);
+}
+// ─── Exports ─────────────────────────────────────────────────────────────────
+module.exports = { cmdRollback };
+//# sourceMappingURL=rollback.js.map

package/dist/lib/commands/rollback.js.map

@@ -0,0 +1 @@
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package/dist/lib/commands/scan.d.ts

@@ -0,0 +1,25 @@
+/**
+ * GRD Commands/Scan -- Orchestrator for the prompt injection scanner.
+ *
+ * Composes lib/scan/injection and lib/scan/base64, loads the ignorefile,
+ * and produces a structured ScanReport. Does not touch process.exit or
+ * output formatting — the CLI dispatch layer handles that.
+ */
+import type { ScanHit } from "../scan/types";
+export type ScanMode = "staged" | "diff" | "file" | "all";
+export interface ScanReport {
+    version: 1;
+    mode: ScanMode;
+    scanned: number;
+    hits: ScanHit[];
+    exitCode: 0 | 1;
+}
+export interface RunScanOpts {
+    mode: ScanMode;
+    files: string[];
+    ignoreFilePath: string | null;
+    injectionOnly: boolean;
+    base64Only: boolean;
+}
+export declare function runScan(opts: RunScanOpts): ScanReport;
+//# sourceMappingURL=scan.d.ts.map

package/dist/lib/commands/scan.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"scan.d.ts","sourceRoot":"","sources":["../../../lib/commands/scan.ts"],"names":[],"mappings":"AAEA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAmB7C,MAAM,MAAM,QAAQ,GAAG,QAAQ,GAAG,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;AAE1D,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,CAAC,CAAC;IACX,IAAI,EAAE,QAAQ,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,OAAO,EAAE,CAAC;IAChB,QAAQ,EAAE,CAAC,GAAG,CAAC,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,QAAQ,CAAC;IACf,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,cAAc,EAAE,MAAM,GAAG,IAAI,CAAC;IAC9B,aAAa,EAAE,OAAO,CAAC;IACvB,UAAU,EAAE,OAAO,CAAC;CACrB;AAED,wBAAgB,OAAO,CAAC,IAAI,EAAE,WAAW,GAAG,UAAU,CAsBrD"}

package/dist/lib/commands/scan.js

@@ -0,0 +1,28 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.runScan = runScan;
+const { scanProse } = require("../scan/injection");
+const { scanBase64 } = require("../scan/base64");
+const { loadIgnoreFile } = require("../scan/ignorefile");
+function runScan(opts) {
+    const { mode, files, ignoreFilePath, injectionOnly, base64Only } = opts;
+    const ignoreEntries = ignoreFilePath ? loadIgnoreFile(ignoreFilePath) : [];
+    const hits = [];
+    if (!base64Only) {
+        hits.push(...scanProse(files, { ignoreEntries }));
+    }
+    if (!injectionOnly) {
+        hits.push(...scanBase64(files, { ignoreEntries }));
+    }
+    const unignoredCount = hits.filter((h) => !h.ignored).length;
+    const exitCode = unignoredCount > 0 ? 1 : 0;
+    return {
+        version: 1,
+        mode,
+        scanned: files.length,
+        hits,
+        exitCode,
+    };
+}
+module.exports = { runScan };
+//# sourceMappingURL=scan.js.map

package/dist/lib/commands/scan.js.map

@@ -0,0 +1 @@
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package/dist/lib/commands/search.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=search.d.ts.map

package/dist/lib/commands/search.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../../lib/commands/search.ts"],"names":[],"mappings":""}

package/dist/lib/commands/search.js

@@ -0,0 +1,212 @@
+'use strict';
+Object.defineProperty(exports, "__esModule", { value: true });
+/** GRD Commands/Search -- Search, migration, and coverage report operations */
+const fs = require('fs');
+const path = require('path');
+const child_process = require('child_process');
+const { safeReadFile, loadConfig, output, error, } = require('../utils');
+const { currentMilestone, planningDir: getPlanningDir, } = require('../paths');
+// ─── Internal Helpers ────────────────────────────────────────────────────────
+/** Recursively collect all .md files under a directory. */
+function collectMarkdownFiles(dir) {
+    const results = [];
+    try {
+        const entries = fs.readdirSync(dir, { withFileTypes: true });
+        for (const entry of entries) {
+            const fullPath = path.join(dir, entry.name);
+            if (entry.isDirectory()) {
+                results.push(...collectMarkdownFiles(fullPath));
+            }
+            else if (entry.isFile() && entry.name.endsWith('.md')) {
+                results.push(fullPath);
+            }
+        }
+    }
+    catch {
+        /* Directory doesn't exist or can't be read */
+    }
+    return results;
+}
+// ─── CLI: Search ─────────────────────────────────────────────────────────────
+/**
+ * CLI command: Search across all .planning/ markdown files for a text query.
+ * Returns file paths, line numbers, and matching lines.
+ */
+function cmdSearch(cwd, query, raw) {
+    if (!query) {
+        error('Search query is required');
+        return;
+    }
+    const planningDir = getPlanningDir(cwd);
+    const mdFiles = collectMarkdownFiles(planningDir);
+    const matches = [];
+    const queryLower = query.toLowerCase();
+    for (const filePath of mdFiles) {
+        const content = safeReadFile(filePath);
+        if (!content)
+            continue;
+        const lines = content.split('\n');
+        for (let i = 0; i < lines.length; i++) {
+            if (lines[i].toLowerCase().includes(queryLower)) {
+                matches.push({
+                    file: path.relative(planningDir, filePath),
+                    line: i + 1,
+                    content: lines[i],
+                });
+            }
+        }
+    }
+    output({ matches, count: matches.length, query }, raw);
+}
+// ─── CLI: Migrate Dirs ──────────────────────────────────────────────────────
+/**
+ * CLI command: Migrate old-style flat .planning/ subdirectories to the
+ * milestone-scoped hierarchy under .planning/milestones/{milestone}/.
+ * Idempotent: running twice produces no changes on the second run.
+ */
+function cmdMigrateDirs(cwd, raw, dryRun) {
+    const milestone = currentMilestone(cwd);
+    const planningDir = getPlanningDir(cwd);
+    const migrationMap = [
+        { name: 'phases', target: milestone },
+        { name: 'research', target: milestone },
+        { name: 'todos', target: milestone },
+        { name: 'quick', target: milestone },
+    ];
+    const movedDirectories = [];
+    const skipped = [];
+    const errors = [];
+    for (const entry of migrationMap) {
+        const oldDir = path.join(planningDir, entry.name);
+        if (!fs.existsSync(oldDir)) {
+            skipped.push(entry.name);
+            continue;
+        }
+        let contents;
+        try {
+            contents = fs.readdirSync(oldDir);
+        }
+        catch {
+            skipped.push(entry.name);
+            continue;
+        }
+        if (contents.length === 0) {
+            skipped.push(entry.name);
+            continue;
+        }
+        const targetDir = path.join(planningDir, 'milestones', entry.target, entry.name);
+        if (dryRun) {
+            movedDirectories.push({
+                from: entry.name,
+                to: path.join('milestones', entry.target, entry.name),
+                entries_to_move: contents.filter((item) => !fs.existsSync(path.join(targetDir, item))).length,
+            });
+            continue;
+        }
+        fs.mkdirSync(targetDir, { recursive: true });
+        let entriesMoved = 0;
+        for (const item of contents) {
+            const srcPath = path.join(oldDir, item);
+            const destPath = path.join(targetDir, item);
+            if (fs.existsSync(destPath))
+                continue;
+            try {
+                const srcStats = fs.statSync(srcPath);
+                if (srcStats.isDirectory()) {
+                    fs.cpSync(srcPath, destPath, { recursive: true });
+                }
+                else {
+                    fs.cpSync(srcPath, destPath);
+                }
+                fs.rmSync(srcPath, { recursive: true, force: true });
+                entriesMoved++;
+            }
+            catch (err) {
+                errors.push({ entry: entry.name, item, error: err.message });
+            }
+        }
+        if (entriesMoved > 0) {
+            movedDirectories.push({
+                from: entry.name,
+                to: path.join('milestones', entry.target, entry.name),
+                entries_moved: entriesMoved,
+            });
+        }
+    }
+    const alreadyMigrated = movedDirectories.length === 0;
+    const result = {
+        milestone,
+        moved_directories: movedDirectories,
+        skipped,
+        already_migrated: alreadyMigrated,
+        errors,
+        ...(dryRun ? { dry_run: true } : {}),
+    };
+    output(result, raw, dryRun
+        ? `dry-run: would migrate ${movedDirectories.length} directory(ies)`
+        : JSON.stringify(result));
+}
+// ─── CLI: Coverage Report ───────────────────────────────────────────────────
+/**
+ * CLI command: Generate a structured coverage report identifying modules below threshold.
+ * Runs jest with json-summary reporter and parses the output.
+ */
+function cmdCoverageReport(cwd, options, raw) {
+    const threshold = options.threshold || 85;
+    const config = loadConfig(cwd);
+    const summaryPath = path.join(cwd, 'coverage', 'coverage-summary.json');
+    let coverageData;
+    let summaryContent;
+    try {
+        child_process.execFileSync('npx', ['jest', '--coverage', '--coverageReporters=json-summary', '--silent', '--forceExit'], { cwd, encoding: 'utf-8', timeout: config.timeouts.jest_ms, stdio: 'pipe' });
+        summaryContent = fs.readFileSync(summaryPath, 'utf-8');
+        coverageData = JSON.parse(summaryContent);
+    }
+    catch (_e) {
+        if (fs.existsSync(summaryPath)) {
+            summaryContent = summaryContent || fs.readFileSync(summaryPath, 'utf-8');
+            coverageData = JSON.parse(summaryContent);
+        }
+        else {
+            output({ error: 'Failed to generate coverage report', details: _e.message }, raw);
+            return;
+        }
+    }
+    const modules = [];
+    const belowThreshold = [];
+    for (const [filePath, data] of Object.entries(coverageData)) {
+        if (filePath === 'total')
+            continue;
+        const relativePath = path.relative(cwd, filePath);
+        if (!relativePath.startsWith('lib/'))
+            continue;
+        const entry = {
+            module: relativePath,
+            lines: data.lines.pct,
+            branches: data.branches.pct,
+            functions: data.functions.pct,
+            statements: data.statements.pct,
+        };
+        modules.push(entry);
+        if (data.lines.pct < threshold) {
+            belowThreshold.push({ ...entry, gap: +(threshold - data.lines.pct).toFixed(1) });
+        }
+    }
+    modules.sort((a, b) => a.lines - b.lines);
+    belowThreshold.sort((a, b) => a.lines - b.lines);
+    output({
+        threshold,
+        total_modules: modules.length,
+        below_threshold_count: belowThreshold.length,
+        all_above: belowThreshold.length === 0,
+        below_threshold: belowThreshold,
+        modules,
+    }, raw);
+}
+// ─── Exports ─────────────────────────────────────────────────────────────────
+module.exports = {
+    cmdSearch,
+    cmdMigrateDirs,
+    cmdCoverageReport,
+};
+//# sourceMappingURL=search.js.map

package/dist/lib/commands/search.js.map

@@ -0,0 +1 @@
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