@jokerized/getresearchdone 0.4.1

package/dist/lib/commands/plan-phase.js

@@ -0,0 +1,288 @@
+'use strict';
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.parsePlanCandidates = parsePlanCandidates;
+exports.writePlanCandidates = writePlanCandidates;
+exports.cmdPlanPhase = cmdPlanPhase;
+/**
+ * GRD Commands/PlanPhase — multi-candidate plan scaffolding (v0.4 Phase 2).
+ *
+ * Parses a planner subprocess's marker-fenced output and writes N
+ * PLAN-i.md files to the phase directory atomically. Fail-closed by
+ * default: if the planner returned a count other than N, NO files are
+ * written. Pass --allow-partial-candidates to write what was found and
+ * warn loudly.
+ *
+ * Marker format the planner is told to emit (in commands/plan-phase.md
+ * <multi_candidate> block):
+ *
+ *   <<<PLAN-1>>>
+ *   ... full plan content (YAML frontmatter + body) ...
+ *   <<</PLAN-1>>>
+ *   <<<PLAN-2>>>
+ *   ...
+ *   <<</PLAN-2>>>
+ *
+ * When N === 1, this command is a no-op for the planner prompt
+ * (commands/plan-phase.md suppresses the <multi_candidate> block) and
+ * the planner writes a bare PLAN.md via its Write tool, as in v0.3.x.
+ *
+ * Public surface:
+ *   - parsePlanCandidates(text, expectedN) — pure parser
+ *   - writePlanCandidates(phaseDir, blocks) — atomic batched writer
+ *   - cmdPlanPhase(cwd, phaseNum, opts, raw) — CLI entry
+ *
+ * Exit codes:
+ *   0 — success (N files written)
+ *   1 — validation failure (count mismatch, marker parse error)
+ *   2 — invocation error (phase not found, input unreadable)
+ */
+const fs = require('fs');
+const path = require('path');
+const { findPhaseDir, getMilestoneInfo, loadConfig, resolveEffortKnob, output, error, } = require('../utils');
+const { atomicWriteFileSync, } = require('../autopilot-waves');
+// ─── Marker parsing ────────────────────────────────────────────────────────
+const OPEN_RE = /^<<<PLAN-(\d+)>>>\s*$/;
+const CLOSE_RE = /^<<<\/PLAN-(\d+)>>>\s*$/;
+/**
+ * Parse marker-fenced PLAN blocks from planner output.
+ *
+ * Returns ok: true with sorted unique blocks when the count of valid
+ * <<<PLAN-i>>>...<<</PLAN-i>>> pairs equals expectedN AND the indices
+ * cover 1..expectedN exactly. Anything else returns ok: false with a
+ * reason and the list of indices that were found (for diagnostics).
+ *
+ * Rejects: duplicate indices, mismatched open/close pairs, nested
+ * blocks, blocks with index 0 or > expectedN.
+ */
+function parsePlanCandidates(text, expectedN) {
+    if (expectedN < 1) {
+        return { ok: false, reason: 'expectedN must be >= 1', foundIndices: [] };
+    }
+    const lines = text.split('\n');
+    const blocks = [];
+    let currentIndex = null;
+    let currentBuffer = [];
+    for (let i = 0; i < lines.length; i++) {
+        const line = lines[i];
+        const openMatch = line.match(OPEN_RE);
+        const closeMatch = line.match(CLOSE_RE);
+        if (openMatch) {
+            if (currentIndex !== null) {
+                return {
+                    ok: false,
+                    reason: `nested <<<PLAN-${openMatch[1]}>>> opened while <<<PLAN-${currentIndex}>>> still open (line ${i + 1})`,
+                    foundIndices: blocks.map((b) => b.index),
+                };
+            }
+            currentIndex = parseInt(openMatch[1], 10);
+            currentBuffer = [];
+        }
+        else if (closeMatch) {
+            const closeIndex = parseInt(closeMatch[1], 10);
+            if (currentIndex === null) {
+                return {
+                    ok: false,
+                    reason: `unexpected <<</PLAN-${closeIndex}>>> with no matching open (line ${i + 1})`,
+                    foundIndices: blocks.map((b) => b.index),
+                };
+            }
+            if (closeIndex !== currentIndex) {
+                return {
+                    ok: false,
+                    reason: `mismatched <<</PLAN-${closeIndex}>>> for open <<<PLAN-${currentIndex}>>> (line ${i + 1})`,
+                    foundIndices: blocks.map((b) => b.index),
+                };
+            }
+            blocks.push({ index: currentIndex, content: currentBuffer.join('\n') });
+            currentIndex = null;
+            currentBuffer = [];
+        }
+        else if (currentIndex !== null) {
+            currentBuffer.push(line);
+        }
+    }
+    if (currentIndex !== null) {
+        return {
+            ok: false,
+            reason: `<<<PLAN-${currentIndex}>>> never closed`,
+            foundIndices: blocks.map((b) => b.index),
+        };
+    }
+    const indices = blocks.map((b) => b.index);
+    if (blocks.length !== expectedN) {
+        return {
+            ok: false,
+            reason: `expected ${expectedN} PLAN block(s), found ${blocks.length}`,
+            foundIndices: indices,
+        };
+    }
+    const seen = new Set();
+    for (const idx of indices) {
+        if (seen.has(idx)) {
+            return { ok: false, reason: `duplicate PLAN-${idx} block`, foundIndices: indices };
+        }
+        seen.add(idx);
+    }
+    for (let i = 1; i <= expectedN; i++) {
+        if (!seen.has(i)) {
+            return {
+                ok: false,
+                reason: `missing PLAN-${i} block (expected 1..${expectedN})`,
+                foundIndices: indices,
+            };
+        }
+    }
+    blocks.sort((a, b) => a.index - b.index);
+    return { ok: true, blocks };
+}
+// ─── File writing ──────────────────────────────────────────────────────────
+/**
+ * Write each block to `<phaseDir>/PLAN-<i>.md` atomically. Writes are
+ * batched: every file's content is materialized to disk via
+ * atomicWriteFileSync. Callers are expected to have already validated
+ * that the phase directory exists.
+ */
+function writePlanCandidates(phaseDir, blocks) {
+    if (!fs.existsSync(phaseDir)) {
+        throw new Error(`phase directory not found: ${phaseDir}`);
+    }
+    const written = [];
+    for (const block of blocks) {
+        const filename = `PLAN-${block.index}.md`;
+        const filePath = path.join(phaseDir, filename);
+        atomicWriteFileSync(filePath, block.content);
+        written.push(filePath);
+    }
+    return { written };
+}
+/**
+ * `gd plan-phase <N> --candidates K [--input FILE] [--allow-partial-candidates]`
+ *
+ * Reads planner output text from --input (or stdin if no --input given),
+ * parses K marker-fenced PLAN blocks, and writes them as PLAN-1.md ...
+ * PLAN-K.md in the phase directory. Fail-closed on count mismatch
+ * unless --allow-partial-candidates is set.
+ *
+ * Default candidate count resolves from
+ * `resolveEffortKnob(config, 'candidates_per_plan_phase')` per
+ * v0.4 Phase 1.
+ */
+function cmdPlanPhase(cwd, phaseNum, opts, raw) {
+    const milestone = getMilestoneInfo(cwd);
+    const phasesDir = path.join(cwd, '.planning', 'milestones', milestone.version, 'phases');
+    const phaseDirName = findPhaseDir(phasesDir, phaseNum);
+    if (!phaseDirName) {
+        error(`phase ${phaseNum} not found under ${phasesDir}`);
+    }
+    const phaseDir = path.join(phasesDir, phaseDirName);
+    // Resolve N: explicit --candidates wins; else fall back to effort knob.
+    let expectedN = opts.candidates;
+    if (!Number.isInteger(expectedN) || expectedN < 1) {
+        const cfg = loadConfig(cwd);
+        expectedN = resolveEffortKnob(cfg, 'candidates_per_plan_phase');
+    }
+    if (expectedN > 9) {
+        error(`--candidates ${expectedN} exceeds the v0.4 sanity bound of 9`);
+    }
+    // Read planner output: --input file path, or stdin if absent.
+    const plannerText = readPlannerInput(opts.inputFile);
+    const parsed = parsePlanCandidates(plannerText, expectedN);
+    if (!parsed.ok && !opts.allowPartial) {
+        const result = {
+            phase: phaseNum,
+            phaseDir,
+            candidates: expectedN,
+            blocksFound: parsed.foundIndices.length,
+            written: [],
+            ok: false,
+            reason: parsed.reason,
+        };
+        // Fail-closed: emit JSON / raw on stdout so the caller can see the
+        // structured failure, then exit with code 1.
+        if (raw) {
+            process.stdout.write(`plan-candidates failed: ${parsed.reason}\n`);
+        }
+        else {
+            process.stdout.write(JSON.stringify(result, null, 2) + '\n');
+        }
+        process.exit(1);
+    }
+    // --allow-partial-candidates: extract whatever valid blocks we can.
+    let blocks;
+    if (parsed.ok) {
+        blocks = parsed.blocks;
+    }
+    else {
+        // Re-parse with relaxed validation: any well-formed block counts.
+        blocks = extractPartialBlocks(plannerText);
+        process.stderr.write(`Warning: --allow-partial-candidates active. Planner returned ${blocks.length} valid block(s) instead of ${expectedN}. Writing what was found.\n`);
+    }
+    const writeRes = writePlanCandidates(phaseDir, blocks);
+    const result = {
+        phase: phaseNum,
+        phaseDir,
+        candidates: expectedN,
+        blocksFound: blocks.length,
+        written: writeRes.written,
+        ok: true,
+    };
+    output(result, raw, writeRes.written.join('\n'));
+}
+/**
+ * Read planner output text from an explicit file or stdin. error() is
+ * `never` so callers can treat the return as definitely-string.
+ */
+function readPlannerInput(inputFile) {
+    if (inputFile) {
+        try {
+            return fs.readFileSync(inputFile, 'utf-8');
+        }
+        catch (e) {
+            error(`failed to read --input ${inputFile}: ${e.message}`);
+            throw new Error('unreachable', { cause: e });
+        }
+    }
+    try {
+        return fs.readFileSync(0, 'utf-8');
+    }
+    catch (e) {
+        error(`failed to read planner output from stdin: ${e.message}`);
+        throw new Error('unreachable', { cause: e });
+    }
+}
+/**
+ * Extract every well-formed <<<PLAN-i>>>...<<</PLAN-i>>> block without
+ * enforcing count/index coverage. Used only on the
+ * --allow-partial-candidates path.
+ */
+function extractPartialBlocks(text) {
+    const lines = text.split('\n');
+    const blocks = [];
+    let currentIndex = null;
+    let buffer = [];
+    for (const line of lines) {
+        const openMatch = line.match(OPEN_RE);
+        const closeMatch = line.match(CLOSE_RE);
+        if (openMatch) {
+            currentIndex = parseInt(openMatch[1], 10);
+            buffer = [];
+        }
+        else if (closeMatch) {
+            if (currentIndex !== null && parseInt(closeMatch[1], 10) === currentIndex) {
+                blocks.push({ index: currentIndex, content: buffer.join('\n') });
+            }
+            currentIndex = null;
+            buffer = [];
+        }
+        else if (currentIndex !== null) {
+            buffer.push(line);
+        }
+    }
+    return blocks;
+}
+module.exports = {
+    parsePlanCandidates,
+    writePlanCandidates,
+    cmdPlanPhase,
+};
+//# sourceMappingURL=plan-phase.js.map

package/dist/lib/commands/plan-phase.js.map

@@ -0,0 +1 @@
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package/dist/lib/commands/progress.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=progress.d.ts.map

package/dist/lib/commands/progress.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"progress.d.ts","sourceRoot":"","sources":["../../../lib/commands/progress.ts"],"names":[],"mappings":""}

package/dist/lib/commands/progress.js

@@ -0,0 +1,266 @@
+'use strict';
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = require('fs');
+const path = require('path');
+const { output, getMilestoneInfo, } = require('../utils');
+const { phasesDir: getPhasesDirPath, planningDir: getPlanningDir, } = require('../paths');
+const { readCachedState, } = require('./phase-info');
+const { loadConfig, } = require('../utils');
+// ─── Progress Render ─────────────────────────────────────────────────────────
+/** Render project progress in the specified format (json, table, or bar). */
+function cmdProgressRender(cwd, format, raw) {
+    const phasesDir = getPhasesDirPath(cwd);
+    const milestone = getMilestoneInfo(cwd);
+    const phases = [];
+    let totalPlans = 0;
+    let totalSummaries = 0;
+    try {
+        const dirs = fs
+            .readdirSync(phasesDir, { withFileTypes: true })
+            .filter((e) => e.isDirectory())
+            .map((e) => e.name)
+            .sort((a, b) => {
+            const aNum = parseFloat((a.match(/^(\d+(?:\.\d+)?)/) || ['0'])[1] || '0');
+            const bNum = parseFloat((b.match(/^(\d+(?:\.\d+)?)/) || ['0'])[1] || '0');
+            return aNum - bNum;
+        });
+        for (const dir of dirs) {
+            const dm = dir.match(/^(\d+(?:\.\d+)?)-?(.*)/);
+            const phaseNum = dm ? dm[1] : dir;
+            const phaseName = dm && dm[2] ? dm[2].replace(/-/g, ' ') : '';
+            const phaseFiles = fs.readdirSync(path.join(phasesDir, dir));
+            const plans = phaseFiles.filter((f) => f.endsWith('-PLAN.md') || f === 'PLAN.md').length;
+            const summaries = phaseFiles.filter((f) => f.endsWith('-SUMMARY.md') || f === 'SUMMARY.md').length;
+            totalPlans += plans;
+            totalSummaries += summaries;
+            let status;
+            if (plans === 0)
+                status = 'Pending';
+            else if (summaries >= plans)
+                status = 'Complete';
+            else if (summaries > 0)
+                status = 'In Progress';
+            else
+                status = 'Planned';
+            phases.push({ number: phaseNum, name: phaseName, plans, summaries, status });
+        }
+    }
+    catch {
+        /* phases dir may not exist */
+    }
+    const percent = totalPlans > 0 ? Math.round((totalSummaries / totalPlans) * 100) : 0;
+    // Check research file staleness
+    let stalenessDays = 30;
+    try {
+        const cfg = loadConfig(cwd);
+        if (cfg.survey && typeof cfg.survey.staleness_days === 'number') {
+            stalenessDays = cfg.survey.staleness_days;
+        }
+    }
+    catch {
+        // Config unavailable — use default
+    }
+    const stalenessMs = stalenessDays * 24 * 60 * 60 * 1000;
+    const now = Date.now();
+    const staleResearchFiles = [];
+    const planningBase = getPlanningDir(cwd);
+    const researchFilesToCheck = [
+        path.join(planningBase, 'research', 'LANDSCAPE.md'),
+    ];
+    try {
+        const milestonesBase = path.join(planningBase, 'milestones');
+        const msDirs = fs.readdirSync(milestonesBase).filter((d) => {
+            try {
+                return fs.statSync(path.join(milestonesBase, d)).isDirectory();
+            }
+            catch {
+                return false;
+            }
+        });
+        for (const ms of msDirs) {
+            // Codex r3 P2: survey output is LANDSCAPE.md (path helpers'
+            // canonical name); SUMMARY.md is a phase artifact, not a
+            // research artifact, so it would never trigger staleness.
+            researchFilesToCheck.push(path.join(milestonesBase, ms, 'research', 'LANDSCAPE.md'));
+        }
+    }
+    catch {
+        // milestones dir may not exist
+    }
+    for (const resFile of researchFilesToCheck) {
+        try {
+            const stat = fs.statSync(resFile);
+            if (now - stat.mtimeMs > stalenessMs) {
+                staleResearchFiles.push(path.relative(cwd, resFile));
+            }
+        }
+        catch {
+            // File doesn't exist — not stale, just absent
+        }
+    }
+    // Parse active blockers from STATE.md
+    const blockerItems = [];
+    try {
+        const statePath = path.join(getPlanningDir(cwd), 'STATE.md');
+        const stateContent = readCachedState(statePath) || '';
+        const blockersSection = stateContent.match(/## Blockers\s*\n([\s\S]*?)(?=\n##|$)/i);
+        if (blockersSection) {
+            const blockersText = blockersSection[1].trim();
+            if (blockersText && blockersText !== 'None.' && blockersText !== 'None') {
+                const items = blockersText.match(/^-\s+(.+)$/gm) || [];
+                for (const item of items)
+                    blockerItems.push(item.replace(/^-\s+/, '').trim());
+            }
+        }
+    }
+    catch {
+        /* STATE.md may not exist */
+    }
+    if (format === 'table') {
+        const barWidth = 10;
+        const filled = Math.round((percent / 100) * barWidth);
+        const bar = '\u2588'.repeat(filled) + '\u2591'.repeat(barWidth - filled);
+        let out = `# ${milestone.version} ${milestone.name}\n\n`;
+        out += `**Progress:** [${bar}] ${totalSummaries}/${totalPlans} plans (${percent}%)\n\n`;
+        if (blockerItems.length > 0) {
+            out += `> **BLOCKED** \u2014 ${blockerItems.length} active blocker(s):\n`;
+            for (const b of blockerItems)
+                out += `> - ${b}\n`;
+            out += `\n`;
+        }
+        if (staleResearchFiles.length > 0) {
+            out += `## Research Freshness Warnings\n\n`;
+            out += `The following research files are older than ${stalenessDays} days. Run \`/grd:survey\` to refresh:\n\n`;
+            for (const f of staleResearchFiles)
+                out += `- \`${f}\`\n`;
+            out += `\n`;
+        }
+        out += `| Phase | Name | Plans | Status |\n|-------|------|-------|--------|\n`;
+        for (const p of phases)
+            out += `| ${p.number} | ${p.name} | ${p.summaries}/${p.plans} | ${p.status} |\n`;
+        output({ rendered: out }, raw, out);
+    }
+    else if (format === 'bar') {
+        const barWidth = 20;
+        const filled = Math.round((percent / 100) * barWidth);
+        const bar = '\u2588'.repeat(filled) + '\u2591'.repeat(barWidth - filled);
+        const text = `[${bar}] ${totalSummaries}/${totalPlans} plans (${percent}%)`;
+        output({ bar: text, percent, completed: totalSummaries, total: totalPlans }, raw, text);
+    }
+    else {
+        const humanSummary = `${milestone.version} ${milestone.name}: ${totalSummaries}/${totalPlans} plans (${percent}%)`;
+        output({
+            milestone_version: milestone.version,
+            milestone_name: milestone.name,
+            phases,
+            total_plans: totalPlans,
+            total_summaries: totalSummaries,
+            percent,
+            active_blockers: blockerItems.length,
+            blocker_items: blockerItems,
+            stale_research_files: staleResearchFiles,
+            staleness_threshold_days: stalenessDays,
+        }, raw, humanSummary);
+    }
+}
+/**
+ * Scan all phase RESEARCH.md and PLAN.md files for citations of must-consider
+ * papers listed in .planning/config.json `must_consider_papers`. Reports a
+ * per-phase coverage table showing which papers are cited vs. missing.
+ */
+function cmdResearchGaps(cwd, raw) {
+    const planningDir = getPlanningDir(cwd);
+    const configPath = path.join(planningDir, 'config.json');
+    let mustConsider = [];
+    if (fs.existsSync(configPath)) {
+        try {
+            const cfg = JSON.parse(fs.readFileSync(configPath, 'utf-8'));
+            const raw_papers = cfg['must_consider_papers'];
+            if (Array.isArray(raw_papers)) {
+                mustConsider = raw_papers.map((p) => ({
+                    title: String(p['title'] ?? ''),
+                    keywords: Array.isArray(p['keywords']) ? p['keywords'].map(String) : [],
+                })).filter((p) => p.title.length > 0);
+            }
+        }
+        catch { /* ignore parse errors */ }
+    }
+    if (mustConsider.length === 0) {
+        output({ must_consider_count: 0, phases_scanned: 0, coverage: [], uncited_global: [], note: 'No must_consider_papers in .planning/config.json' }, raw, 'No must_consider_papers configured. Add them to .planning/config.json to use research-gaps.');
+        return;
+    }
+    // Gather phase directories
+    const milestonesBase = path.join(planningDir, 'milestones');
+    const phaseDirs = [];
+    if (fs.existsSync(milestonesBase)) {
+        try {
+            for (const ms of fs.readdirSync(milestonesBase)) {
+                const phasesBase = path.join(milestonesBase, ms, 'phases');
+                if (!fs.existsSync(phasesBase))
+                    continue;
+                try {
+                    for (const ph of fs.readdirSync(phasesBase)) {
+                        phaseDirs.push({ phaseId: `${ms}/${ph}`, dir: path.join(phasesBase, ph) });
+                    }
+                }
+                catch { /* skip */ }
+            }
+        }
+        catch { /* skip */ }
+    }
+    const coverage = [];
+    const globalCited = new Set();
+    for (const { phaseId, dir } of phaseDirs) {
+        // Codex r3 P2: phase plans are typically prefixed like
+        // `01-01-PLAN.md`, not bare `PLAN.md`. Include all *-PLAN.md and
+        // *-RESEARCH.md files so citation scanning matches the real layout.
+        const candidates = [];
+        try {
+            for (const f of fs.readdirSync(dir)) {
+                if (f === 'RESEARCH.md' || f === 'PLAN.md' || /-PLAN\.md$/.test(f) || /-RESEARCH\.md$/.test(f)) {
+                    candidates.push(path.join(dir, f));
+                }
+            }
+        }
+        catch { /* skip */ }
+        let phaseText = '';
+        for (const c of candidates) {
+            if (fs.existsSync(c)) {
+                try {
+                    phaseText += ' ' + fs.readFileSync(c, 'utf-8').toLowerCase();
+                }
+                catch { /* skip */ }
+            }
+        }
+        if (!phaseText.trim())
+            continue;
+        const cited = [];
+        const missing = [];
+        for (const paper of mustConsider) {
+            const allTerms = [paper.title, ...paper.keywords].map((t) => t.toLowerCase());
+            const isCited = allTerms.some((term) => phaseText.includes(term));
+            if (isCited) {
+                cited.push(paper.title);
+                globalCited.add(paper.title);
+            }
+            else {
+                missing.push(paper.title);
+            }
+        }
+        coverage.push({ phase: phaseId, cited, missing });
+    }
+    const uncited_global = mustConsider.map((p) => p.title).filter((t) => !globalCited.has(t));
+    const result = {
+        must_consider_count: mustConsider.length,
+        phases_scanned: coverage.length,
+        coverage,
+        uncited_global,
+    };
+    const summary = uncited_global.length === 0
+        ? `All ${mustConsider.length} must-consider papers cited across ${coverage.length} phases`
+        : `${uncited_global.length}/${mustConsider.length} papers uncited in any phase`;
+    output(result, raw, summary);
+}
+// ─── Exports ─────────────────────────────────────────────────────────────────
+module.exports = { cmdProgressRender, cmdResearchGaps };
+//# sourceMappingURL=progress.js.map

package/dist/lib/commands/progress.js.map

@@ -0,0 +1 @@
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package/dist/lib/commands/quality.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=quality.d.ts.map

package/dist/lib/commands/quality.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"quality.d.ts","sourceRoot":"","sources":["../../../lib/commands/quality.ts"],"names":[],"mappings":""}