npm - @jbrowse/plugin-wiggle - Versions diffs - 2.5.0 → 2.6.2 - Mend

@jbrowse/plugin-wiggle 2.5.0 → 2.6.2

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Files changed (404) hide show

package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts ADDED Viewed

@@ -0,0 +1,4 @@
+import React from 'react';
+import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
+import { WiggleDisplayModel } from './model';
+export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;

package/dist/MultiLinearWiggleDisplay/models/renderSvg.js ADDED Viewed

@@ -0,0 +1,19 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.renderSvg = void 0;
+const react_1 = __importDefault(require("react"));
+const util_1 = require("@jbrowse/core/util");
+const mobx_1 = require("mobx");
+const WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
+async function renderSvg(self, opts, superRenderSvg) {
+    await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
+    const { offsetPx } = (0, util_1.getContainingView)(self);
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
+        react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
+            react_1.default.createElement(WiggleDisplayComponent_1.StatBars, { model: self, orientation: "left", exportSVG: true }))));
+}
+exports.renderSvg = renderSvg;

package/dist/MultiQuantitativeTrack/configSchema.js CHANGED Viewed

@@ -15,4 +15,3 @@ const configSchema = (pluginManager) => {
     });
 };
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/MultiQuantitativeTrack/index.js CHANGED Viewed

@@ -17,4 +17,3 @@ exports.default = (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js CHANGED Viewed

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const util_1 = require("../util");
+const util_1 = require("@jbrowse/core/util");
 const drawxy_1 = require("../drawxy");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
@@ -36,4 +36,3 @@ class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
     }
 }
 exports.default = MultiRowLineRenderer;
-//# sourceMappingURL=MultiRowLineRenderer.js.map

package/dist/MultiRowLineRenderer/configSchema.js CHANGED Viewed

@@ -36,4 +36,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRende
     explicitlyTyped: true,
 });
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/MultiRowLineRenderer/index.js CHANGED Viewed

@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js CHANGED Viewed

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const util_1 = require("../util");
+const util_1 = require("@jbrowse/core/util");
 const drawxy_1 = require("../drawxy");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
@@ -65,4 +65,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
     }
 }
 exports.default = MultiXYPlotRenderer;
-//# sourceMappingURL=MultiRowXYPlotRenderer.js.map

package/dist/MultiRowXYPlotRenderer/configSchema.js CHANGED Viewed

@@ -50,4 +50,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowXYPlotRen
     explicitlyTyped: true,
 });
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/MultiRowXYPlotRenderer/index.js CHANGED Viewed

@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js CHANGED Viewed

@@ -89,4 +89,3 @@ MultiWiggleAdapter.capabilities = [
     'hasGlobalStats',
 ];
 exports.default = MultiWiggleAdapter;
-//# sourceMappingURL=MultiWiggleAdapter.js.map

package/dist/MultiWiggleAdapter/configSchema.js CHANGED Viewed

@@ -24,4 +24,3 @@ const MultiWiggleAdapter = (0, configuration_1.ConfigurationSchema)('MultiWiggle
     },
 }, { explicitlyTyped: true });
 exports.default = MultiWiggleAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/MultiWiggleAdapter/index.js CHANGED Viewed

@@ -44,4 +44,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MultiWiggleAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts CHANGED Viewed

@@ -1,4 +1,5 @@
+import React from 'react';
 import { AddTrackModel } from '@jbrowse/plugin-data-management';
 export default function MultiWiggleWidget({ model }: {
     model: AddTrackModel;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js CHANGED Viewed

@@ -71,7 +71,7 @@ function MultiWiggleWidget({ model }) {
                 var _a;
                 const session = (0, util_1.getSession)(model);
                 const trackId = [
-                    `${trackName.toLowerCase().replace(/ /g, '_')}-${Date.now()}`,
+                    `${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
                     `${session.adminMode ? '' : '-sessionTrack'}`,
                 ].join('');
                 // allow list of bigwigs in JSON format or line-by-line
@@ -110,4 +110,3 @@ function MultiWiggleWidget({ model }) {
             react_1.default.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
 }
 exports.default = MultiWiggleWidget;
-//# sourceMappingURL=AddTrackWorkflow.js.map

package/dist/MultiWiggleAddTrackWidget/index.js CHANGED Viewed

@@ -14,4 +14,3 @@ exports.default = (pm) => {
         stateModel: mobx_state_tree_1.types.model({}),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/MultiWiggleRendering.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 import { Source } from './util';
@@ -15,6 +16,6 @@ declare function WiggleRendering(props: {
     displayModel: {
         isMultiRow: boolean;
     };
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof WiggleRendering;
 export default _default;

package/dist/MultiWiggleRendering.js CHANGED Viewed

@@ -97,4 +97,3 @@ function WiggleRendering(props) {
         react_1.default.createElement(ui_1.PrerenderedCanvas, { ...props })));
 }
 exports.default = (0, mobx_react_1.observer)(WiggleRendering);
-//# sourceMappingURL=MultiWiggleRendering.js.map

package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js CHANGED Viewed

@@ -26,8 +26,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+const util_1 = require("@jbrowse/core/util");
 const drawxy_1 = require("../drawxy");
-const util_1 = require("../util");
+const util_2 = require("../util");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
     // @ts-expect-error
@@ -44,7 +45,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
             const { reducedFeatures } = (0, drawxy_1.drawXY)(ctx, {
                 ...props,
                 features,
-                offset: util_1.YSCALEBAR_LABEL_OFFSET,
+                offset: util_2.YSCALEBAR_LABEL_OFFSET,
                 colorCallback: () => source.color || 'blue',
                 Color,
             });
@@ -54,4 +55,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
     }
 }
 exports.default = MultiXYPlotRenderer;
-//# sourceMappingURL=MultiXYPlotRenderer.js.map

package/dist/MultiXYPlotRenderer/configSchema.js CHANGED Viewed

@@ -50,4 +50,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiXYPlotRender
     explicitlyTyped: true,
 });
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/MultiXYPlotRenderer/index.js CHANGED Viewed

@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/QuantitativeTrack/configSchema.js CHANGED Viewed

@@ -15,4 +15,3 @@ function configSchemaFactory(pluginManager) {
     });
 }
 exports.default = configSchemaFactory;
-//# sourceMappingURL=configSchema.js.map

package/dist/QuantitativeTrack/index.js CHANGED Viewed

@@ -17,4 +17,3 @@ exports.default = (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/Tooltip.d.ts CHANGED Viewed

@@ -15,6 +15,6 @@ declare function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, cl
     offsetMouseCoord: Coord;
     clientRect?: DOMRect;
     TooltipContents: TooltipContentsComponent;
-}): JSX.Element | null;
+}): React.JSX.Element | null;
 declare const _default: typeof Tooltip;
 export default _default;

package/dist/Tooltip.js CHANGED Viewed

@@ -93,4 +93,3 @@ function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect
             } }))) : null;
 }
 exports.default = (0, mobx_react_1.observer)(Tooltip);
-//# sourceMappingURL=Tooltip.js.map

package/dist/WiggleBaseRenderer.d.ts CHANGED Viewed

@@ -38,7 +38,7 @@ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
         height: number;
         width: number;
         containsNoTransferables: boolean;
-        reactElement: JSX.Element;
+        reactElement: import("react").JSX.Element;
         html?: string | undefined;
     } | {
         features: Map<string, Feature>;

package/dist/WiggleBaseRenderer.js CHANGED Viewed

@@ -40,4 +40,3 @@ class WiggleBaseRenderer extends FeatureRendererType_1.default {
     }
 }
 exports.default = WiggleBaseRenderer;
-//# sourceMappingURL=WiggleBaseRenderer.js.map

package/dist/WiggleRPC/MultiWiggleGetSources.js CHANGED Viewed

@@ -48,4 +48,3 @@ class MultiWiggleGetSources extends RpcMethodType_1.default {
     }
 }
 exports.MultiWiggleGetSources = MultiWiggleGetSources;
-//# sourceMappingURL=MultiWiggleGetSources.js.map

package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js CHANGED Viewed

@@ -34,4 +34,3 @@ class WiggleGetGlobalQuantitativeStats extends RpcMethodType_1.default {
     }
 }
 exports.WiggleGetGlobalQuantitativeStats = WiggleGetGlobalQuantitativeStats;
-//# sourceMappingURL=WiggleGetGlobalQuantitativeStats.js.map

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js CHANGED Viewed

@@ -51,4 +51,3 @@ class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType_1.default {
     }
 }
 exports.WiggleGetMultiRegionQuantitativeStats = WiggleGetMultiRegionQuantitativeStats;
-//# sourceMappingURL=WiggleGetMultiRegionQuantitativeStats.js.map

package/dist/WiggleRPC/rpcMethods.js CHANGED Viewed

@@ -17,4 +17,3 @@ Object.defineProperty(exports, "__esModule", { value: true });
 __exportStar(require("./MultiWiggleGetSources"), exports);
 __exportStar(require("./WiggleGetMultiRegionQuantitativeStats"), exports);
 __exportStar(require("./WiggleGetGlobalQuantitativeStats"), exports);
-//# sourceMappingURL=rpcMethods.js.map

package/dist/WiggleRendering.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 declare function WiggleRendering(props: {
@@ -10,6 +11,6 @@ declare function WiggleRendering(props: {
     onMouseMove: Function;
     onFeatureClick: Function;
     blockKey: string;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof WiggleRendering;
 export default _default;

package/dist/WiggleRendering.js CHANGED Viewed

@@ -58,4 +58,3 @@ function WiggleRendering(props) {
         react_1.default.createElement(ui_1.PrerenderedCanvas, { ...props })));
 }
 exports.default = (0, mobx_react_1.observer)(WiggleRendering);
-//# sourceMappingURL=WiggleRendering.js.map

package/dist/XYPlotRenderer/XYPlotRenderer.js CHANGED Viewed

@@ -52,4 +52,3 @@ class XYPlotRenderer extends WiggleBaseRenderer_1.default {
     }
 }
 exports.default = XYPlotRenderer;
-//# sourceMappingURL=XYPlotRenderer.js.map

package/dist/XYPlotRenderer/configSchema.js CHANGED Viewed

@@ -50,4 +50,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('XYPlotRenderer',
     explicitlyTyped: true,
 });
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/XYPlotRenderer/index.js CHANGED Viewed

@@ -21,4 +21,3 @@ var WiggleRendering_2 = require("../WiggleRendering");
 Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleRendering_2).default; } });
 var configSchema_2 = require("./configSchema");
 Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_2).default; } });
-//# sourceMappingURL=index.js.map

package/dist/configSchema.js CHANGED Viewed

@@ -64,4 +64,3 @@ const WiggleRenderer = (0, configuration_1.ConfigurationSchema)('WiggleRenderer'
     },
 }, { explicitlyTyped: true });
 exports.default = WiggleRenderer;
-//# sourceMappingURL=configSchema.js.map

package/dist/drawxy.js CHANGED Viewed

@@ -287,4 +287,3 @@ function drawDensity(ctx, props) {
     return { reducedFeatures };
 }
 exports.drawDensity = drawDensity;
-//# sourceMappingURL=drawxy.js.map