@jbrowse/plugin-wiggle 2.5.0 → 2.6.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
- package/dist/BigWigAdapter/configSchema.js +0 -1
- package/dist/BigWigAdapter/index.js +0 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
- package/dist/CreateMultiWiggleExtension/index.js +0 -1
- package/dist/DensityRenderer/DensityRenderer.js +0 -1
- package/dist/DensityRenderer/configSchema.js +0 -1
- package/dist/DensityRenderer/index.js +0 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -1
- package/dist/LinePlotRenderer/configSchema.js +0 -1
- package/dist/LinePlotRenderer/index.js +0 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/dist/LinearWiggleDisplay/index.js +27 -5
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
- package/dist/LinearWiggleDisplay/models/configSchema.js +6 -68
- package/dist/LinearWiggleDisplay/models/model.d.ts +147 -342
- package/dist/LinearWiggleDisplay/models/model.js +17 -433
- package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/LinearWiggleDisplay/models/renderSvg.js +20 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/dist/MultiDensityRenderer/configSchema.js +0 -1
- package/dist/MultiDensityRenderer/index.js +0 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/dist/MultiLineRenderer/configSchema.js +0 -1
- package/dist/MultiLineRenderer/index.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -3
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +0 -1
- package/dist/MultiLinearWiggleDisplay/index.js +25 -3
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -67
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
- package/dist/MultiLinearWiggleDisplay/models/model.js +335 -509
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +19 -0
- package/dist/MultiQuantitativeTrack/configSchema.js +0 -1
- package/dist/MultiQuantitativeTrack/index.js +0 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/dist/MultiRowLineRenderer/configSchema.js +0 -1
- package/dist/MultiRowLineRenderer/index.js +0 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -1
- package/dist/MultiRowXYPlotRenderer/index.js +0 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
- package/dist/MultiWiggleAdapter/configSchema.js +0 -1
- package/dist/MultiWiggleAdapter/index.js +0 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
- package/dist/MultiWiggleAddTrackWidget/index.js +0 -1
- package/dist/MultiWiggleRendering.d.ts +2 -1
- package/dist/MultiWiggleRendering.js +0 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -3
- package/dist/MultiXYPlotRenderer/configSchema.js +0 -1
- package/dist/MultiXYPlotRenderer/index.js +0 -1
- package/dist/QuantitativeTrack/configSchema.js +0 -1
- package/dist/QuantitativeTrack/index.js +0 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/Tooltip.js +0 -1
- package/dist/WiggleBaseRenderer.d.ts +1 -1
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -1
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
- package/dist/WiggleRPC/rpcMethods.js +0 -1
- package/dist/WiggleRendering.d.ts +2 -1
- package/dist/WiggleRendering.js +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -1
- package/dist/XYPlotRenderer/configSchema.js +0 -1
- package/dist/XYPlotRenderer/index.js +0 -1
- package/dist/configSchema.js +0 -1
- package/dist/drawxy.js +0 -1
- package/dist/index.d.ts +222 -198
- package/dist/index.js +0 -1
- package/dist/shared/SetMinMaxDialog.d.ts +2 -1
- package/dist/shared/SetMinMaxDialog.js +0 -1
- package/dist/shared/YScaleBar.d.ts +4 -2
- package/dist/shared/YScaleBar.js +1 -2
- package/dist/shared/configShared.d.ts +85 -0
- package/dist/shared/configShared.js +83 -0
- package/dist/shared/modelShared.d.ts +576 -0
- package/dist/shared/modelShared.js +479 -0
- package/dist/util.d.ts +0 -3
- package/dist/util.js +1 -12
- package/esm/BigWigAdapter/BigWigAdapter.js +2 -2
- package/esm/BigWigAdapter/configSchema.js +0 -1
- package/esm/BigWigAdapter/index.js +0 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
- package/esm/CreateMultiWiggleExtension/index.js +0 -1
- package/esm/DensityRenderer/DensityRenderer.js +0 -1
- package/esm/DensityRenderer/configSchema.js +0 -1
- package/esm/DensityRenderer/index.js +0 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.js +0 -1
- package/esm/LinePlotRenderer/configSchema.js +0 -1
- package/esm/LinePlotRenderer/index.js +0 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/esm/LinearWiggleDisplay/index.js +2 -3
- package/esm/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
- package/esm/LinearWiggleDisplay/models/configSchema.js +3 -68
- package/esm/LinearWiggleDisplay/models/model.d.ts +147 -342
- package/esm/LinearWiggleDisplay/models/model.js +20 -436
- package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/LinearWiggleDisplay/models/renderSvg.js +13 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/esm/MultiDensityRenderer/configSchema.js +0 -1
- package/esm/MultiDensityRenderer/index.js +0 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.js +0 -1
- package/esm/MultiLineRenderer/index.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -2
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +0 -1
- package/esm/MultiLinearWiggleDisplay/index.js +2 -3
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -67
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
- package/esm/MultiLinearWiggleDisplay/models/model.js +337 -513
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +12 -0
- package/esm/MultiQuantitativeTrack/configSchema.js +0 -1
- package/esm/MultiQuantitativeTrack/index.js +0 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.js +0 -1
- package/esm/MultiRowLineRenderer/index.js +0 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.js +0 -1
- package/esm/MultiRowXYPlotRenderer/index.js +0 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
- package/esm/MultiWiggleAdapter/configSchema.js +0 -1
- package/esm/MultiWiggleAdapter/index.js +0 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
- package/esm/MultiWiggleAddTrackWidget/index.js +0 -1
- package/esm/MultiWiggleRendering.d.ts +2 -1
- package/esm/MultiWiggleRendering.js +0 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -2
- package/esm/MultiXYPlotRenderer/configSchema.js +0 -1
- package/esm/MultiXYPlotRenderer/index.js +0 -1
- package/esm/QuantitativeTrack/configSchema.js +0 -1
- package/esm/QuantitativeTrack/index.js +0 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/Tooltip.js +0 -1
- package/esm/WiggleBaseRenderer.d.ts +1 -1
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.js +0 -1
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
- package/esm/WiggleRPC/rpcMethods.js +0 -1
- package/esm/WiggleRendering.d.ts +2 -1
- package/esm/WiggleRendering.js +0 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js +0 -1
- package/esm/XYPlotRenderer/configSchema.js +0 -1
- package/esm/XYPlotRenderer/index.js +0 -1
- package/esm/configSchema.js +0 -1
- package/esm/drawxy.js +0 -1
- package/esm/index.d.ts +222 -198
- package/esm/index.js +0 -1
- package/esm/shared/SetMinMaxDialog.d.ts +2 -1
- package/esm/shared/SetMinMaxDialog.js +0 -1
- package/esm/shared/YScaleBar.d.ts +4 -2
- package/esm/shared/YScaleBar.js +1 -2
- package/esm/shared/configShared.d.ts +85 -0
- package/esm/shared/configShared.js +80 -0
- package/esm/shared/modelShared.d.ts +576 -0
- package/esm/shared/modelShared.js +453 -0
- package/esm/util.d.ts +0 -3
- package/esm/util.js +0 -10
- package/package.json +4 -5
- package/dist/BigWigAdapter/BigWigAdapter.js.map +0 -1
- package/dist/BigWigAdapter/configSchema.js.map +0 -1
- package/dist/BigWigAdapter/index.js.map +0 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
- package/dist/CreateMultiWiggleExtension/index.js.map +0 -1
- package/dist/DensityRenderer/DensityRenderer.js.map +0 -1
- package/dist/DensityRenderer/configSchema.js.map +0 -1
- package/dist/DensityRenderer/index.js.map +0 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
- package/dist/LinePlotRenderer/configSchema.js.map +0 -1
- package/dist/LinePlotRenderer/index.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/dist/LinearWiggleDisplay/index.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/model.js.map +0 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
- package/dist/MultiDensityRenderer/configSchema.js.map +0 -1
- package/dist/MultiDensityRenderer/index.js.map +0 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
- package/dist/MultiLineRenderer/configSchema.js.map +0 -1
- package/dist/MultiLineRenderer/index.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/index.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +0 -1
- package/dist/MultiQuantitativeTrack/configSchema.js.map +0 -1
- package/dist/MultiQuantitativeTrack/index.js.map +0 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
- package/dist/MultiRowLineRenderer/configSchema.js.map +0 -1
- package/dist/MultiRowLineRenderer/index.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/index.js.map +0 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
- package/dist/MultiWiggleAdapter/configSchema.js.map +0 -1
- package/dist/MultiWiggleAdapter/index.js.map +0 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
- package/dist/MultiWiggleAddTrackWidget/index.js.map +0 -1
- package/dist/MultiWiggleRendering.js.map +0 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
- package/dist/MultiXYPlotRenderer/configSchema.js.map +0 -1
- package/dist/MultiXYPlotRenderer/index.js.map +0 -1
- package/dist/QuantitativeTrack/configSchema.js.map +0 -1
- package/dist/QuantitativeTrack/index.js.map +0 -1
- package/dist/Tooltip.js.map +0 -1
- package/dist/WiggleBaseRenderer.js.map +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
- package/dist/WiggleRPC/rpcMethods.js.map +0 -1
- package/dist/WiggleRendering.js.map +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
- package/dist/XYPlotRenderer/configSchema.js.map +0 -1
- package/dist/XYPlotRenderer/index.js.map +0 -1
- package/dist/configSchema.js.map +0 -1
- package/dist/drawxy.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/dist/shared/SetMinMaxDialog.js.map +0 -1
- package/dist/shared/YScaleBar.js.map +0 -1
- package/dist/util.js.map +0 -1
- package/esm/BigWigAdapter/BigWigAdapter.js.map +0 -1
- package/esm/BigWigAdapter/configSchema.js.map +0 -1
- package/esm/BigWigAdapter/index.js.map +0 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
- package/esm/CreateMultiWiggleExtension/index.js.map +0 -1
- package/esm/DensityRenderer/DensityRenderer.js.map +0 -1
- package/esm/DensityRenderer/configSchema.js.map +0 -1
- package/esm/DensityRenderer/index.js.map +0 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
- package/esm/LinePlotRenderer/configSchema.js.map +0 -1
- package/esm/LinePlotRenderer/index.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/esm/LinearWiggleDisplay/index.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/model.js.map +0 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
- package/esm/MultiDensityRenderer/configSchema.js.map +0 -1
- package/esm/MultiDensityRenderer/index.js.map +0 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
- package/esm/MultiLineRenderer/configSchema.js.map +0 -1
- package/esm/MultiLineRenderer/index.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/index.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +0 -1
- package/esm/MultiQuantitativeTrack/configSchema.js.map +0 -1
- package/esm/MultiQuantitativeTrack/index.js.map +0 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
- package/esm/MultiRowLineRenderer/configSchema.js.map +0 -1
- package/esm/MultiRowLineRenderer/index.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/index.js.map +0 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
- package/esm/MultiWiggleAdapter/configSchema.js.map +0 -1
- package/esm/MultiWiggleAdapter/index.js.map +0 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
- package/esm/MultiWiggleAddTrackWidget/index.js.map +0 -1
- package/esm/MultiWiggleRendering.js.map +0 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
- package/esm/MultiXYPlotRenderer/configSchema.js.map +0 -1
- package/esm/MultiXYPlotRenderer/index.js.map +0 -1
- package/esm/QuantitativeTrack/configSchema.js.map +0 -1
- package/esm/QuantitativeTrack/index.js.map +0 -1
- package/esm/Tooltip.js.map +0 -1
- package/esm/WiggleBaseRenderer.js.map +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
- package/esm/WiggleRPC/rpcMethods.js.map +0 -1
- package/esm/WiggleRendering.js.map +0 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
- package/esm/XYPlotRenderer/configSchema.js.map +0 -1
- package/esm/XYPlotRenderer/index.js.map +0 -1
- package/esm/configSchema.js.map +0 -1
- package/esm/drawxy.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/esm/shared/SetMinMaxDialog.js.map +0 -1
- package/esm/shared/YScaleBar.js.map +0 -1
- package/esm/util.js.map +0 -1
- package/src/BigWigAdapter/BigWigAdapter.test.ts +0 -66
- package/src/BigWigAdapter/BigWigAdapter.ts +0 -114
- package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +0 -117
- package/src/BigWigAdapter/configSchema.ts +0 -34
- package/src/BigWigAdapter/index.ts +0 -20
- package/src/BigWigAdapter/test_data/volvox.bw +0 -0
- package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +0 -68
- package/src/CreateMultiWiggleExtension/index.ts +0 -66
- package/src/DensityRenderer/DensityRenderer.test.ts +0 -62
- package/src/DensityRenderer/DensityRenderer.ts +0 -14
- package/src/DensityRenderer/__snapshots__/DensityRenderer.test.ts.snap +0 -21
- package/src/DensityRenderer/configSchema.ts +0 -22
- package/src/DensityRenderer/index.ts +0 -17
- package/src/LinePlotRenderer/LinePlotRenderer.ts +0 -19
- package/src/LinePlotRenderer/configSchema.ts +0 -30
- package/src/LinePlotRenderer/index.ts +0 -16
- package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +0 -107
- package/src/LinearWiggleDisplay/components/Tooltip.tsx +0 -59
- package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -53
- package/src/LinearWiggleDisplay/index.ts +0 -26
- package/src/LinearWiggleDisplay/models/configSchema.ts +0 -116
- package/src/LinearWiggleDisplay/models/model.tsx +0 -713
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +0 -39
- package/src/MultiDensityRenderer/configSchema.ts +0 -21
- package/src/MultiDensityRenderer/index.ts +0 -16
- package/src/MultiLineRenderer/MultiLineRenderer.ts +0 -29
- package/src/MultiLineRenderer/configSchema.ts +0 -39
- package/src/MultiLineRenderer/index.ts +0 -17
- package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +0 -71
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +0 -287
- package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +0 -77
- package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -254
- package/src/MultiLinearWiggleDisplay/components/declare.d.ts +0 -1
- package/src/MultiLinearWiggleDisplay/components/util.test.ts +0 -69
- package/src/MultiLinearWiggleDisplay/components/util.ts +0 -33
- package/src/MultiLinearWiggleDisplay/index.ts +0 -21
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +0 -142
- package/src/MultiLinearWiggleDisplay/models/model.tsx +0 -708
- package/src/MultiQuantitativeTrack/configSchema.ts +0 -23
- package/src/MultiQuantitativeTrack/index.ts +0 -20
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +0 -36
- package/src/MultiRowLineRenderer/configSchema.ts +0 -42
- package/src/MultiRowLineRenderer/index.ts +0 -16
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +0 -43
- package/src/MultiRowXYPlotRenderer/configSchema.ts +0 -56
- package/src/MultiRowXYPlotRenderer/index.ts +0 -16
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +0 -125
- package/src/MultiWiggleAdapter/configSchema.ts +0 -32
- package/src/MultiWiggleAdapter/index.ts +0 -24
- package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +0 -130
- package/src/MultiWiggleAddTrackWidget/index.ts +0 -17
- package/src/MultiWiggleRendering.tsx +0 -125
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +0 -32
- package/src/MultiXYPlotRenderer/configSchema.ts +0 -54
- package/src/MultiXYPlotRenderer/index.ts +0 -17
- package/src/QuantitativeTrack/configSchema.ts +0 -23
- package/src/QuantitativeTrack/index.ts +0 -20
- package/src/Tooltip.tsx +0 -123
- package/src/WiggleBaseRenderer.tsx +0 -91
- package/src/WiggleRPC/MultiWiggleGetSources.ts +0 -68
- package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +0 -44
- package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +0 -73
- package/src/WiggleRPC/rpcMethods.ts +0 -3
- package/src/WiggleRendering.test.js +0 -21
- package/src/WiggleRendering.tsx +0 -76
- package/src/XYPlotRenderer/XYPlotRenderer.test.ts +0 -52
- package/src/XYPlotRenderer/XYPlotRenderer.ts +0 -37
- package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.ts.snap +0 -21
- package/src/XYPlotRenderer/configSchema.ts +0 -55
- package/src/XYPlotRenderer/index.ts +0 -20
- package/src/__snapshots__/WiggleRendering.test.js.snap +0 -15
- package/src/__snapshots__/index.test.ts.snap +0 -3
- package/src/configSchema.ts +0 -70
- package/src/drawxy.ts +0 -388
- package/src/index.test.ts +0 -16
- package/src/index.ts +0 -130
- package/src/shared/SetMinMaxDialog.tsx +0 -88
- package/src/shared/YScaleBar.tsx +0 -25
- package/src/util.test.ts +0 -43
- package/src/util.ts +0 -327
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Object.defineProperty(exports, "__esModule", { value: true });
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const react_1 =
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const react_1 = require("react");
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const configuration_1 = require("@jbrowse/core/configuration");
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const util_1 = require("@jbrowse/core/util");
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const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
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const mobx_1 = require("mobx");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const react_d3_axis_mod_1 = require("react-d3-axis-mod");
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// locals
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const util_2 = require("../../util");
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const Tooltip_1 = __importDefault(require("../components/Tooltip"));
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const
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const modelShared_1 = __importDefault(require("../../shared/modelShared"));
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// lazies
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const SetColorDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/SetColorDialog'))));
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/**
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@@ -260,157 +62,18 @@ function stateModelFactory(pluginManager, configSchema) {
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return Tooltip_1.default;
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},
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/**
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},
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return self.rendererTypeNameState || (0, configuration_1.getConf)(self, 'defaultRendering');
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},
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const name =
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const name = self.rendererTypeNameSimple;
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const rendererType = rendererTypes.get(name);
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throw new Error(`unknown renderer ${name}`);
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return rendererType;
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},
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/**
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* #getter
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* subclasses can define these, as snpcoverage track does
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get filters() {
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return undefined;
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},
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/**
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get scaleType() {
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/**
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get maxScore() {
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return (_a = self.constraints.max) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'maxScore');
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},
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/**
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get minScore() {
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return (_a = self.constraints.min) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'minScore');
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},
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.views(self => ({
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/**
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*/
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get rendererConfig() {
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const { color, displayCrossHatches, fill, minSize, negColor, posColor, summaryScoreMode, scaleType, rendererTypeName, } = self;
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const configBlob = (0, configuration_1.getConf)(self, ['renderers', rendererTypeName]) || {};
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return self.rendererType.configSchema.create({
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...configBlob,
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...(scaleType ? { scaleType } : {}),
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...(fill !== undefined ? { filled: fill } : {}),
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...(displayCrossHatches !== undefined
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? { displayCrossHatches }
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: {}),
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},
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|
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|
|
@@ -434,13 +97,6 @@ function stateModelFactory(pluginManager, configSchema) {
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? { ...ticks, values: domain }
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: ticks;
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99
|
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|
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/**
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|
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* #getter
|
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|
-
*/
|
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|
-
get adapterCapabilities() {
|
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|
-
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|
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|
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-
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|
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101
|
.views(self => {
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|
|
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|
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124
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/**
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125
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|
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126
|
*/
|
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|
-
get
|
|
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|
-
|
|
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|
-
|
|
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|
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/**
|
|
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|
-
* #getter
|
|
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|
-
*/
|
|
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|
-
get hasGlobalStats() {
|
|
478
|
-
return self.adapterCapabilities.includes('hasGlobalStats');
|
|
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|
+
get needsScalebar() {
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|
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+
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|
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+
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|
|
479
130
|
},
|
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|
/**
|
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|
* #getter
|
|
@@ -503,32 +154,10 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
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154
|
trackMenuItems() {
|
|
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155
|
return [
|
|
505
156
|
...superTrackMenuItems(),
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
subMenu: [
|
|
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|
-
{
|
|
512
|
-
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|
|
513
|
-
onClick: () => self.setResolution(self.resolution * 5),
|
|
514
|
-
},
|
|
515
|
-
{
|
|
516
|
-
label: 'Coarser resolution',
|
|
517
|
-
onClick: () => self.setResolution(self.resolution / 5),
|
|
518
|
-
},
|
|
519
|
-
],
|
|
520
|
-
},
|
|
521
|
-
{
|
|
522
|
-
label: 'Summary score mode',
|
|
523
|
-
subMenu: ['min', 'max', 'avg', 'whiskers'].map(elt => ({
|
|
524
|
-
label: elt,
|
|
525
|
-
type: 'radio',
|
|
526
|
-
checked: self.summaryScoreModeSetting === elt,
|
|
527
|
-
onClick: () => self.setSummaryScoreMode(elt),
|
|
528
|
-
})),
|
|
529
|
-
},
|
|
530
|
-
]
|
|
531
|
-
: []),
|
|
157
|
+
{
|
|
158
|
+
label: 'Score',
|
|
159
|
+
subMenu: self.scoreTrackMenuItems(),
|
|
160
|
+
},
|
|
532
161
|
...(self.canHaveFill
|
|
533
162
|
? [
|
|
534
163
|
{
|
|
@@ -542,10 +171,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
542
171
|
},
|
|
543
172
|
]
|
|
544
173
|
: []),
|
|
545
|
-
{
|
|
546
|
-
label: self.scaleType === 'log' ? 'Set linear scale' : 'Set log scale',
|
|
547
|
-
onClick: () => self.toggleLogScale(),
|
|
548
|
-
},
|
|
549
174
|
...(self.needsScalebar
|
|
550
175
|
? [
|
|
551
176
|
{
|
|
@@ -569,33 +194,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
569
194
|
},
|
|
570
195
|
]
|
|
571
196
|
: []),
|
|
572
|
-
{
|
|
573
|
-
label: 'Autoscale type',
|
|
574
|
-
subMenu: [
|
|
575
|
-
['local', 'Local'],
|
|
576
|
-
...(self.hasGlobalStats
|
|
577
|
-
? [
|
|
578
|
-
['global', 'Global'],
|
|
579
|
-
['globalsd', 'Global ± 3σ'],
|
|
580
|
-
]
|
|
581
|
-
: []),
|
|
582
|
-
['localsd', 'Local ± 3σ'],
|
|
583
|
-
].map(([val, label]) => ({
|
|
584
|
-
label,
|
|
585
|
-
type: 'radio',
|
|
586
|
-
checked: self.autoscaleType === val,
|
|
587
|
-
onClick: () => self.setAutoscale(val),
|
|
588
|
-
})),
|
|
589
|
-
},
|
|
590
|
-
{
|
|
591
|
-
label: 'Set min/max score',
|
|
592
|
-
onClick: () => {
|
|
593
|
-
(0, util_1.getSession)(self).queueDialog(handleClose => [
|
|
594
|
-
SetMinMaxDlg,
|
|
595
|
-
{ model: self, handleClose },
|
|
596
|
-
]);
|
|
597
|
-
},
|
|
598
|
-
},
|
|
599
197
|
{
|
|
600
198
|
label: 'Set color',
|
|
601
199
|
onClick: () => {
|
|
@@ -610,16 +208,8 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
610
208
|
};
|
|
611
209
|
})
|
|
612
210
|
.actions(self => {
|
|
613
|
-
const {
|
|
211
|
+
const { renderSvg: superRenderSvg } = self;
|
|
614
212
|
return {
|
|
615
|
-
/**
|
|
616
|
-
* #action
|
|
617
|
-
* re-runs stats and refresh whole display on reload
|
|
618
|
-
*/
|
|
619
|
-
async reload() {
|
|
620
|
-
self.setError();
|
|
621
|
-
superReload();
|
|
622
|
-
},
|
|
623
213
|
afterAttach() {
|
|
624
214
|
(0, util_2.quantitativeStatsAutorun)(self);
|
|
625
215
|
},
|
|
@@ -627,16 +217,10 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
627
217
|
* #action
|
|
628
218
|
*/
|
|
629
219
|
async renderSvg(opts) {
|
|
630
|
-
await (
|
|
631
|
-
|
|
632
|
-
const { offsetPx } = (0, util_1.getContainingView)(self);
|
|
633
|
-
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
634
|
-
react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
|
|
635
|
-
needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
|
|
636
|
-
react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
|
|
220
|
+
const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
|
|
221
|
+
return renderSvg(self, opts, superRenderSvg);
|
|
637
222
|
},
|
|
638
223
|
};
|
|
639
224
|
});
|
|
640
225
|
}
|
|
641
226
|
exports.default = stateModelFactory;
|
|
642
|
-
//# sourceMappingURL=model.js.map
|
|
@@ -0,0 +1,4 @@
|
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
3
|
+
import { WiggleDisplayModel } from './model';
|
|
4
|
+
export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
+
};
|
|
5
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.renderSvg = void 0;
|
|
7
|
+
const react_1 = __importDefault(require("react"));
|
|
8
|
+
const util_1 = require("@jbrowse/core/util");
|
|
9
|
+
const mobx_1 = require("mobx");
|
|
10
|
+
const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
|
|
11
|
+
async function renderSvg(self, opts, superRenderSvg) {
|
|
12
|
+
await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
|
|
13
|
+
const { needsScalebar, stats } = self;
|
|
14
|
+
const { offsetPx } = (0, util_1.getContainingView)(self);
|
|
15
|
+
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
16
|
+
react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
|
|
17
|
+
needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
|
|
18
|
+
react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
|
|
19
|
+
}
|
|
20
|
+
exports.renderSvg = renderSvg;
|
|
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const util_1 = require("
|
|
6
|
+
const util_1 = require("@jbrowse/core/util");
|
|
7
7
|
const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
|
|
8
8
|
const drawxy_1 = require("../drawxy");
|
|
9
9
|
class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
@@ -39,4 +39,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
|
39
39
|
}
|
|
40
40
|
}
|
|
41
41
|
exports.default = MultiXYPlotRenderer;
|
|
42
|
-
//# sourceMappingURL=MultiDensityRenderer.js.map
|
|
@@ -3,8 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
const util_1 = require("@jbrowse/core/util");
|
|
6
7
|
const drawxy_1 = require("../drawxy");
|
|
7
|
-
const util_1 = require("../util");
|
|
8
8
|
const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
|
|
9
9
|
class MultiLineRenderer extends WiggleBaseRenderer_1.default {
|
|
10
10
|
// @ts-expect-error
|
|
@@ -28,4 +28,3 @@ class MultiLineRenderer extends WiggleBaseRenderer_1.default {
|
|
|
28
28
|
}
|
|
29
29
|
}
|
|
30
30
|
exports.default = MultiLineRenderer;
|
|
31
|
-
//# sourceMappingURL=MultiLineRenderer.js.map
|
|
@@ -1,6 +1,7 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { DialogProps } from '@mui/material';
|
|
2
3
|
declare function DraggableDialog(props: DialogProps & {
|
|
3
4
|
title: string;
|
|
4
|
-
}): JSX.Element;
|
|
5
|
+
}): React.JSX.Element;
|
|
5
6
|
declare const _default: typeof DraggableDialog;
|
|
6
7
|
export default _default;
|
|
@@ -1,3 +1,4 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { Source } from '../../util';
|
|
2
3
|
export default function SetColorDialog({ model, handleClose, }: {
|
|
3
4
|
model: {
|
|
@@ -6,4 +7,4 @@ export default function SetColorDialog({ model, handleClose, }: {
|
|
|
6
7
|
clearLayout: () => void;
|
|
7
8
|
};
|
|
8
9
|
handleClose: () => void;
|
|
9
|
-
}): JSX.Element;
|
|
10
|
+
}): React.JSX.Element;
|
|
@@ -35,13 +35,13 @@ const clone_1 = __importDefault(require("clone"));
|
|
|
35
35
|
// locals
|
|
36
36
|
const DraggableDialog_1 = __importDefault(require("./DraggableDialog"));
|
|
37
37
|
const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
|
|
38
|
-
const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
|
|
39
38
|
const util_2 = require("./util");
|
|
40
39
|
// icons
|
|
41
40
|
const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
|
|
42
41
|
const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
|
|
43
42
|
const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
|
|
44
43
|
const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
|
|
44
|
+
const UriLink_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/UriLink"));
|
|
45
45
|
const useStyles = (0, mui_1.makeStyles)()({
|
|
46
46
|
content: {
|
|
47
47
|
minWidth: 800,
|
|
@@ -143,7 +143,7 @@ function SourcesGrid({ rows, onChange, showTips, }) {
|
|
|
143
143
|
sortingOrder: [null],
|
|
144
144
|
renderCell: (params) => {
|
|
145
145
|
const { value } = params;
|
|
146
|
-
return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(
|
|
146
|
+
return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(UriLink_1.default, { value: value })) : ((0, util_1.getStr)(value));
|
|
147
147
|
},
|
|
148
148
|
// @ts-ignore
|
|
149
149
|
width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
|
|
@@ -168,4 +168,3 @@ function SourcesGrid({ rows, onChange, showTips, }) {
|
|
|
168
168
|
: rows);
|
|
169
169
|
} }))));
|
|
170
170
|
}
|
|
171
|
-
//# sourceMappingURL=SetColorDialog.js.map
|