@jbrowse/plugin-wiggle 2.5.0 → 2.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (404) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
  2. package/dist/BigWigAdapter/configSchema.js +0 -1
  3. package/dist/BigWigAdapter/index.js +0 -1
  4. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
  5. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
  6. package/dist/CreateMultiWiggleExtension/index.js +0 -1
  7. package/dist/DensityRenderer/DensityRenderer.js +0 -1
  8. package/dist/DensityRenderer/configSchema.js +0 -1
  9. package/dist/DensityRenderer/index.js +0 -1
  10. package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -1
  11. package/dist/LinePlotRenderer/configSchema.js +0 -1
  12. package/dist/LinePlotRenderer/index.js +0 -1
  13. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  14. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
  15. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  16. package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
  17. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
  18. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  19. package/dist/LinearWiggleDisplay/index.js +27 -5
  20. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
  21. package/dist/LinearWiggleDisplay/models/configSchema.js +6 -68
  22. package/dist/LinearWiggleDisplay/models/model.d.ts +147 -342
  23. package/dist/LinearWiggleDisplay/models/model.js +17 -433
  24. package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  25. package/dist/LinearWiggleDisplay/models/renderSvg.js +20 -0
  26. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
  27. package/dist/MultiDensityRenderer/configSchema.js +0 -1
  28. package/dist/MultiDensityRenderer/index.js +0 -1
  29. package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
  30. package/dist/MultiLineRenderer/configSchema.js +0 -1
  31. package/dist/MultiLineRenderer/index.js +0 -1
  32. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
  33. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
  34. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  35. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -3
  36. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  37. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
  38. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
  39. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  40. package/dist/MultiLinearWiggleDisplay/components/util.js +0 -1
  41. package/dist/MultiLinearWiggleDisplay/index.js +25 -3
  42. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
  43. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -67
  44. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
  45. package/dist/MultiLinearWiggleDisplay/models/model.js +335 -509
  46. package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  47. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +19 -0
  48. package/dist/MultiQuantitativeTrack/configSchema.js +0 -1
  49. package/dist/MultiQuantitativeTrack/index.js +0 -1
  50. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  51. package/dist/MultiRowLineRenderer/configSchema.js +0 -1
  52. package/dist/MultiRowLineRenderer/index.js +0 -1
  53. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  54. package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -1
  55. package/dist/MultiRowXYPlotRenderer/index.js +0 -1
  56. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
  57. package/dist/MultiWiggleAdapter/configSchema.js +0 -1
  58. package/dist/MultiWiggleAdapter/index.js +0 -1
  59. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
  60. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
  61. package/dist/MultiWiggleAddTrackWidget/index.js +0 -1
  62. package/dist/MultiWiggleRendering.d.ts +2 -1
  63. package/dist/MultiWiggleRendering.js +0 -1
  64. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -3
  65. package/dist/MultiXYPlotRenderer/configSchema.js +0 -1
  66. package/dist/MultiXYPlotRenderer/index.js +0 -1
  67. package/dist/QuantitativeTrack/configSchema.js +0 -1
  68. package/dist/QuantitativeTrack/index.js +0 -1
  69. package/dist/Tooltip.d.ts +1 -1
  70. package/dist/Tooltip.js +0 -1
  71. package/dist/WiggleBaseRenderer.d.ts +1 -1
  72. package/dist/WiggleBaseRenderer.js +0 -1
  73. package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -1
  74. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
  75. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
  76. package/dist/WiggleRPC/rpcMethods.js +0 -1
  77. package/dist/WiggleRendering.d.ts +2 -1
  78. package/dist/WiggleRendering.js +0 -1
  79. package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -1
  80. package/dist/XYPlotRenderer/configSchema.js +0 -1
  81. package/dist/XYPlotRenderer/index.js +0 -1
  82. package/dist/configSchema.js +0 -1
  83. package/dist/drawxy.js +0 -1
  84. package/dist/index.d.ts +222 -198
  85. package/dist/index.js +0 -1
  86. package/dist/shared/SetMinMaxDialog.d.ts +2 -1
  87. package/dist/shared/SetMinMaxDialog.js +0 -1
  88. package/dist/shared/YScaleBar.d.ts +4 -2
  89. package/dist/shared/YScaleBar.js +1 -2
  90. package/dist/shared/configShared.d.ts +85 -0
  91. package/dist/shared/configShared.js +83 -0
  92. package/dist/shared/modelShared.d.ts +576 -0
  93. package/dist/shared/modelShared.js +479 -0
  94. package/dist/util.d.ts +0 -3
  95. package/dist/util.js +1 -12
  96. package/esm/BigWigAdapter/BigWigAdapter.js +2 -2
  97. package/esm/BigWigAdapter/configSchema.js +0 -1
  98. package/esm/BigWigAdapter/index.js +0 -1
  99. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
  100. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
  101. package/esm/CreateMultiWiggleExtension/index.js +0 -1
  102. package/esm/DensityRenderer/DensityRenderer.js +0 -1
  103. package/esm/DensityRenderer/configSchema.js +0 -1
  104. package/esm/DensityRenderer/index.js +0 -1
  105. package/esm/LinePlotRenderer/LinePlotRenderer.js +0 -1
  106. package/esm/LinePlotRenderer/configSchema.js +0 -1
  107. package/esm/LinePlotRenderer/index.js +0 -1
  108. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  109. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
  110. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  111. package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
  112. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
  113. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  114. package/esm/LinearWiggleDisplay/index.js +2 -3
  115. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
  116. package/esm/LinearWiggleDisplay/models/configSchema.js +3 -68
  117. package/esm/LinearWiggleDisplay/models/model.d.ts +147 -342
  118. package/esm/LinearWiggleDisplay/models/model.js +20 -436
  119. package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  120. package/esm/LinearWiggleDisplay/models/renderSvg.js +13 -0
  121. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
  122. package/esm/MultiDensityRenderer/configSchema.js +0 -1
  123. package/esm/MultiDensityRenderer/index.js +0 -1
  124. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
  125. package/esm/MultiLineRenderer/configSchema.js +0 -1
  126. package/esm/MultiLineRenderer/index.js +0 -1
  127. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
  128. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
  129. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  130. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -2
  131. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  132. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
  133. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
  134. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  135. package/esm/MultiLinearWiggleDisplay/components/util.js +0 -1
  136. package/esm/MultiLinearWiggleDisplay/index.js +2 -3
  137. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
  138. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -67
  139. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
  140. package/esm/MultiLinearWiggleDisplay/models/model.js +337 -513
  141. package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  142. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +12 -0
  143. package/esm/MultiQuantitativeTrack/configSchema.js +0 -1
  144. package/esm/MultiQuantitativeTrack/index.js +0 -1
  145. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  146. package/esm/MultiRowLineRenderer/configSchema.js +0 -1
  147. package/esm/MultiRowLineRenderer/index.js +0 -1
  148. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  149. package/esm/MultiRowXYPlotRenderer/configSchema.js +0 -1
  150. package/esm/MultiRowXYPlotRenderer/index.js +0 -1
  151. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
  152. package/esm/MultiWiggleAdapter/configSchema.js +0 -1
  153. package/esm/MultiWiggleAdapter/index.js +0 -1
  154. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
  155. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
  156. package/esm/MultiWiggleAddTrackWidget/index.js +0 -1
  157. package/esm/MultiWiggleRendering.d.ts +2 -1
  158. package/esm/MultiWiggleRendering.js +0 -1
  159. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -2
  160. package/esm/MultiXYPlotRenderer/configSchema.js +0 -1
  161. package/esm/MultiXYPlotRenderer/index.js +0 -1
  162. package/esm/QuantitativeTrack/configSchema.js +0 -1
  163. package/esm/QuantitativeTrack/index.js +0 -1
  164. package/esm/Tooltip.d.ts +1 -1
  165. package/esm/Tooltip.js +0 -1
  166. package/esm/WiggleBaseRenderer.d.ts +1 -1
  167. package/esm/WiggleBaseRenderer.js +0 -1
  168. package/esm/WiggleRPC/MultiWiggleGetSources.js +0 -1
  169. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
  170. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
  171. package/esm/WiggleRPC/rpcMethods.js +0 -1
  172. package/esm/WiggleRendering.d.ts +2 -1
  173. package/esm/WiggleRendering.js +0 -1
  174. package/esm/XYPlotRenderer/XYPlotRenderer.js +0 -1
  175. package/esm/XYPlotRenderer/configSchema.js +0 -1
  176. package/esm/XYPlotRenderer/index.js +0 -1
  177. package/esm/configSchema.js +0 -1
  178. package/esm/drawxy.js +0 -1
  179. package/esm/index.d.ts +222 -198
  180. package/esm/index.js +0 -1
  181. package/esm/shared/SetMinMaxDialog.d.ts +2 -1
  182. package/esm/shared/SetMinMaxDialog.js +0 -1
  183. package/esm/shared/YScaleBar.d.ts +4 -2
  184. package/esm/shared/YScaleBar.js +1 -2
  185. package/esm/shared/configShared.d.ts +85 -0
  186. package/esm/shared/configShared.js +80 -0
  187. package/esm/shared/modelShared.d.ts +576 -0
  188. package/esm/shared/modelShared.js +453 -0
  189. package/esm/util.d.ts +0 -3
  190. package/esm/util.js +0 -10
  191. package/package.json +4 -5
  192. package/dist/BigWigAdapter/BigWigAdapter.js.map +0 -1
  193. package/dist/BigWigAdapter/configSchema.js.map +0 -1
  194. package/dist/BigWigAdapter/index.js.map +0 -1
  195. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
  196. package/dist/CreateMultiWiggleExtension/index.js.map +0 -1
  197. package/dist/DensityRenderer/DensityRenderer.js.map +0 -1
  198. package/dist/DensityRenderer/configSchema.js.map +0 -1
  199. package/dist/DensityRenderer/index.js.map +0 -1
  200. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
  201. package/dist/LinePlotRenderer/configSchema.js.map +0 -1
  202. package/dist/LinePlotRenderer/index.js.map +0 -1
  203. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  204. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
  205. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  206. package/dist/LinearWiggleDisplay/index.js.map +0 -1
  207. package/dist/LinearWiggleDisplay/models/configSchema.js.map +0 -1
  208. package/dist/LinearWiggleDisplay/models/model.js.map +0 -1
  209. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
  210. package/dist/MultiDensityRenderer/configSchema.js.map +0 -1
  211. package/dist/MultiDensityRenderer/index.js.map +0 -1
  212. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
  213. package/dist/MultiLineRenderer/configSchema.js.map +0 -1
  214. package/dist/MultiLineRenderer/index.js.map +0 -1
  215. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
  216. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  217. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
  218. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  219. package/dist/MultiLinearWiggleDisplay/components/util.js.map +0 -1
  220. package/dist/MultiLinearWiggleDisplay/index.js.map +0 -1
  221. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
  222. package/dist/MultiLinearWiggleDisplay/models/model.js.map +0 -1
  223. package/dist/MultiQuantitativeTrack/configSchema.js.map +0 -1
  224. package/dist/MultiQuantitativeTrack/index.js.map +0 -1
  225. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
  226. package/dist/MultiRowLineRenderer/configSchema.js.map +0 -1
  227. package/dist/MultiRowLineRenderer/index.js.map +0 -1
  228. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
  229. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
  230. package/dist/MultiRowXYPlotRenderer/index.js.map +0 -1
  231. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
  232. package/dist/MultiWiggleAdapter/configSchema.js.map +0 -1
  233. package/dist/MultiWiggleAdapter/index.js.map +0 -1
  234. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
  235. package/dist/MultiWiggleAddTrackWidget/index.js.map +0 -1
  236. package/dist/MultiWiggleRendering.js.map +0 -1
  237. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
  238. package/dist/MultiXYPlotRenderer/configSchema.js.map +0 -1
  239. package/dist/MultiXYPlotRenderer/index.js.map +0 -1
  240. package/dist/QuantitativeTrack/configSchema.js.map +0 -1
  241. package/dist/QuantitativeTrack/index.js.map +0 -1
  242. package/dist/Tooltip.js.map +0 -1
  243. package/dist/WiggleBaseRenderer.js.map +0 -1
  244. package/dist/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
  245. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
  246. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
  247. package/dist/WiggleRPC/rpcMethods.js.map +0 -1
  248. package/dist/WiggleRendering.js.map +0 -1
  249. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
  250. package/dist/XYPlotRenderer/configSchema.js.map +0 -1
  251. package/dist/XYPlotRenderer/index.js.map +0 -1
  252. package/dist/configSchema.js.map +0 -1
  253. package/dist/drawxy.js.map +0 -1
  254. package/dist/index.js.map +0 -1
  255. package/dist/shared/SetMinMaxDialog.js.map +0 -1
  256. package/dist/shared/YScaleBar.js.map +0 -1
  257. package/dist/util.js.map +0 -1
  258. package/esm/BigWigAdapter/BigWigAdapter.js.map +0 -1
  259. package/esm/BigWigAdapter/configSchema.js.map +0 -1
  260. package/esm/BigWigAdapter/index.js.map +0 -1
  261. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
  262. package/esm/CreateMultiWiggleExtension/index.js.map +0 -1
  263. package/esm/DensityRenderer/DensityRenderer.js.map +0 -1
  264. package/esm/DensityRenderer/configSchema.js.map +0 -1
  265. package/esm/DensityRenderer/index.js.map +0 -1
  266. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
  267. package/esm/LinePlotRenderer/configSchema.js.map +0 -1
  268. package/esm/LinePlotRenderer/index.js.map +0 -1
  269. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  270. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
  271. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  272. package/esm/LinearWiggleDisplay/index.js.map +0 -1
  273. package/esm/LinearWiggleDisplay/models/configSchema.js.map +0 -1
  274. package/esm/LinearWiggleDisplay/models/model.js.map +0 -1
  275. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
  276. package/esm/MultiDensityRenderer/configSchema.js.map +0 -1
  277. package/esm/MultiDensityRenderer/index.js.map +0 -1
  278. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
  279. package/esm/MultiLineRenderer/configSchema.js.map +0 -1
  280. package/esm/MultiLineRenderer/index.js.map +0 -1
  281. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
  282. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  283. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
  284. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  285. package/esm/MultiLinearWiggleDisplay/components/util.js.map +0 -1
  286. package/esm/MultiLinearWiggleDisplay/index.js.map +0 -1
  287. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
  288. package/esm/MultiLinearWiggleDisplay/models/model.js.map +0 -1
  289. package/esm/MultiQuantitativeTrack/configSchema.js.map +0 -1
  290. package/esm/MultiQuantitativeTrack/index.js.map +0 -1
  291. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
  292. package/esm/MultiRowLineRenderer/configSchema.js.map +0 -1
  293. package/esm/MultiRowLineRenderer/index.js.map +0 -1
  294. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
  295. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
  296. package/esm/MultiRowXYPlotRenderer/index.js.map +0 -1
  297. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
  298. package/esm/MultiWiggleAdapter/configSchema.js.map +0 -1
  299. package/esm/MultiWiggleAdapter/index.js.map +0 -1
  300. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
  301. package/esm/MultiWiggleAddTrackWidget/index.js.map +0 -1
  302. package/esm/MultiWiggleRendering.js.map +0 -1
  303. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
  304. package/esm/MultiXYPlotRenderer/configSchema.js.map +0 -1
  305. package/esm/MultiXYPlotRenderer/index.js.map +0 -1
  306. package/esm/QuantitativeTrack/configSchema.js.map +0 -1
  307. package/esm/QuantitativeTrack/index.js.map +0 -1
  308. package/esm/Tooltip.js.map +0 -1
  309. package/esm/WiggleBaseRenderer.js.map +0 -1
  310. package/esm/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
  311. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
  312. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
  313. package/esm/WiggleRPC/rpcMethods.js.map +0 -1
  314. package/esm/WiggleRendering.js.map +0 -1
  315. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
  316. package/esm/XYPlotRenderer/configSchema.js.map +0 -1
  317. package/esm/XYPlotRenderer/index.js.map +0 -1
  318. package/esm/configSchema.js.map +0 -1
  319. package/esm/drawxy.js.map +0 -1
  320. package/esm/index.js.map +0 -1
  321. package/esm/shared/SetMinMaxDialog.js.map +0 -1
  322. package/esm/shared/YScaleBar.js.map +0 -1
  323. package/esm/util.js.map +0 -1
  324. package/src/BigWigAdapter/BigWigAdapter.test.ts +0 -66
  325. package/src/BigWigAdapter/BigWigAdapter.ts +0 -114
  326. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +0 -117
  327. package/src/BigWigAdapter/configSchema.ts +0 -34
  328. package/src/BigWigAdapter/index.ts +0 -20
  329. package/src/BigWigAdapter/test_data/volvox.bw +0 -0
  330. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +0 -68
  331. package/src/CreateMultiWiggleExtension/index.ts +0 -66
  332. package/src/DensityRenderer/DensityRenderer.test.ts +0 -62
  333. package/src/DensityRenderer/DensityRenderer.ts +0 -14
  334. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.ts.snap +0 -21
  335. package/src/DensityRenderer/configSchema.ts +0 -22
  336. package/src/DensityRenderer/index.ts +0 -17
  337. package/src/LinePlotRenderer/LinePlotRenderer.ts +0 -19
  338. package/src/LinePlotRenderer/configSchema.ts +0 -30
  339. package/src/LinePlotRenderer/index.ts +0 -16
  340. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +0 -107
  341. package/src/LinearWiggleDisplay/components/Tooltip.tsx +0 -59
  342. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -53
  343. package/src/LinearWiggleDisplay/index.ts +0 -26
  344. package/src/LinearWiggleDisplay/models/configSchema.ts +0 -116
  345. package/src/LinearWiggleDisplay/models/model.tsx +0 -713
  346. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +0 -39
  347. package/src/MultiDensityRenderer/configSchema.ts +0 -21
  348. package/src/MultiDensityRenderer/index.ts +0 -16
  349. package/src/MultiLineRenderer/MultiLineRenderer.ts +0 -29
  350. package/src/MultiLineRenderer/configSchema.ts +0 -39
  351. package/src/MultiLineRenderer/index.ts +0 -17
  352. package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +0 -71
  353. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +0 -287
  354. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +0 -77
  355. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -254
  356. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +0 -1
  357. package/src/MultiLinearWiggleDisplay/components/util.test.ts +0 -69
  358. package/src/MultiLinearWiggleDisplay/components/util.ts +0 -33
  359. package/src/MultiLinearWiggleDisplay/index.ts +0 -21
  360. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +0 -142
  361. package/src/MultiLinearWiggleDisplay/models/model.tsx +0 -708
  362. package/src/MultiQuantitativeTrack/configSchema.ts +0 -23
  363. package/src/MultiQuantitativeTrack/index.ts +0 -20
  364. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +0 -36
  365. package/src/MultiRowLineRenderer/configSchema.ts +0 -42
  366. package/src/MultiRowLineRenderer/index.ts +0 -16
  367. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +0 -43
  368. package/src/MultiRowXYPlotRenderer/configSchema.ts +0 -56
  369. package/src/MultiRowXYPlotRenderer/index.ts +0 -16
  370. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +0 -125
  371. package/src/MultiWiggleAdapter/configSchema.ts +0 -32
  372. package/src/MultiWiggleAdapter/index.ts +0 -24
  373. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  374. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +0 -130
  375. package/src/MultiWiggleAddTrackWidget/index.ts +0 -17
  376. package/src/MultiWiggleRendering.tsx +0 -125
  377. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +0 -32
  378. package/src/MultiXYPlotRenderer/configSchema.ts +0 -54
  379. package/src/MultiXYPlotRenderer/index.ts +0 -17
  380. package/src/QuantitativeTrack/configSchema.ts +0 -23
  381. package/src/QuantitativeTrack/index.ts +0 -20
  382. package/src/Tooltip.tsx +0 -123
  383. package/src/WiggleBaseRenderer.tsx +0 -91
  384. package/src/WiggleRPC/MultiWiggleGetSources.ts +0 -68
  385. package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +0 -44
  386. package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +0 -73
  387. package/src/WiggleRPC/rpcMethods.ts +0 -3
  388. package/src/WiggleRendering.test.js +0 -21
  389. package/src/WiggleRendering.tsx +0 -76
  390. package/src/XYPlotRenderer/XYPlotRenderer.test.ts +0 -52
  391. package/src/XYPlotRenderer/XYPlotRenderer.ts +0 -37
  392. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.ts.snap +0 -21
  393. package/src/XYPlotRenderer/configSchema.ts +0 -55
  394. package/src/XYPlotRenderer/index.ts +0 -20
  395. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -15
  396. package/src/__snapshots__/index.test.ts.snap +0 -3
  397. package/src/configSchema.ts +0 -70
  398. package/src/drawxy.ts +0 -388
  399. package/src/index.test.ts +0 -16
  400. package/src/index.ts +0 -130
  401. package/src/shared/SetMinMaxDialog.tsx +0 -88
  402. package/src/shared/YScaleBar.tsx +0 -25
  403. package/src/util.test.ts +0 -43
  404. package/src/util.ts +0 -327
@@ -26,17 +26,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
26
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
27
  };
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
29
+ const react_1 = require("react");
30
30
  const configuration_1 = require("@jbrowse/core/configuration");
31
31
  const util_1 = require("@jbrowse/core/util");
32
- const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
33
- const mobx_1 = require("mobx");
34
32
  const mobx_state_tree_1 = require("mobx-state-tree");
35
33
  const react_d3_axis_mod_1 = require("react-d3-axis-mod");
34
+ // locals
36
35
  const util_2 = require("../../util");
37
36
  const Tooltip_1 = __importDefault(require("../components/Tooltip"));
38
- const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
39
- const SetMinMaxDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../../shared/SetMinMaxDialog'))));
37
+ const modelShared_1 = __importDefault(require("../../shared/modelShared"));
38
+ // lazies
40
39
  const SetColorDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/SetColorDialog'))));
41
40
  // using a map because it preserves order
42
41
  const rendererTypes = new Map([
@@ -46,212 +45,15 @@ const rendererTypes = new Map([
46
45
  ]);
47
46
  /**
48
47
  * #stateModel LinearWiggleDisplay
49
- * Extends `BaseLinearDisplay`
48
+ * extends `SharedWiggleMixin`
50
49
  */
51
50
  function stateModelFactory(pluginManager, configSchema) {
52
51
  return mobx_state_tree_1.types
53
- .compose('LinearWiggleDisplay', plugin_linear_genome_view_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
52
+ .compose('LinearWiggleDisplay', (0, modelShared_1.default)(configSchema), mobx_state_tree_1.types.model({
54
53
  /**
55
54
  * #property
56
55
  */
57
56
  type: mobx_state_tree_1.types.literal('LinearWiggleDisplay'),
58
- /**
59
- * #property
60
- */
61
- configuration: (0, configuration_1.ConfigurationReference)(configSchema),
62
- /**
63
- * #property
64
- */
65
- selectedRendering: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, ''),
66
- /**
67
- * #property
68
- */
69
- resolution: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, 1),
70
- /**
71
- * #property
72
- */
73
- fill: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
74
- /**
75
- * #property
76
- */
77
- minSize: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
78
- /**
79
- * #property
80
- */
81
- color: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
82
- /**
83
- * #property
84
- */
85
- posColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
86
- /**
87
- * #property
88
- */
89
- negColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
90
- /**
91
- * #property
92
- */
93
- summaryScoreMode: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
94
- /**
95
- * #property
96
- */
97
- rendererTypeNameState: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
98
- /**
99
- * #property
100
- */
101
- scale: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
102
- /**
103
- * #property
104
- */
105
- autoscale: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
106
- /**
107
- * #property
108
- */
109
- displayCrossHatches: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
110
- /**
111
- * #property
112
- */
113
- constraints: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.model({
114
- max: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
115
- min: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
116
- }), {}),
117
- }))
118
- .volatile(() => ({
119
- message: undefined,
120
- stats: undefined,
121
- statsFetchInProgress: undefined,
122
- }))
123
- .actions(self => ({
124
- /**
125
- * #action
126
- */
127
- updateQuantitativeStats(stats) {
128
- const { scoreMin, scoreMax } = stats;
129
- const EPSILON = 0.000001;
130
- if (!self.stats) {
131
- self.stats = { scoreMin, scoreMax };
132
- }
133
- else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
134
- Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
135
- self.stats = { scoreMin, scoreMax };
136
- }
137
- },
138
- /**
139
- * #action
140
- */
141
- setColor(color) {
142
- self.color = color;
143
- },
144
- /**
145
- * #action
146
- */
147
- setPosColor(color) {
148
- self.posColor = color;
149
- },
150
- /**
151
- * #action
152
- */
153
- setNegColor(color) {
154
- self.negColor = color;
155
- },
156
- /**
157
- * #action
158
- */
159
- setLoading(aborter) {
160
- const { statsFetchInProgress: statsFetch } = self;
161
- if (statsFetch !== undefined && !statsFetch.signal.aborted) {
162
- statsFetch.abort();
163
- }
164
- self.statsFetchInProgress = aborter;
165
- },
166
- /**
167
- * #action
168
- * this overrides the BaseLinearDisplayModel to avoid popping up a
169
- * feature detail display, but still sets the feature selection on the
170
- * model so listeners can detect a click
171
- */
172
- selectFeature(feature) {
173
- const session = (0, util_1.getSession)(self);
174
- if ((0, util_1.isSelectionContainer)(session)) {
175
- session.setSelection(feature);
176
- }
177
- },
178
- /**
179
- * #action
180
- */
181
- setResolution(res) {
182
- self.resolution = res;
183
- },
184
- /**
185
- * #action
186
- */
187
- setFill(fill) {
188
- if (fill === 0) {
189
- self.fill = true;
190
- self.minSize = 0;
191
- }
192
- else if (fill === 1) {
193
- self.fill = false;
194
- self.minSize = 1;
195
- }
196
- else if (fill === 2) {
197
- self.fill = false;
198
- self.minSize = 2;
199
- }
200
- },
201
- /**
202
- * #action
203
- */
204
- toggleLogScale() {
205
- self.scale = self.scale === 'log' ? 'linear' : 'log';
206
- },
207
- /**
208
- * #action
209
- */
210
- setScaleType(scale) {
211
- self.scale = scale;
212
- },
213
- /**
214
- * #action
215
- */
216
- setSummaryScoreMode(val) {
217
- self.summaryScoreMode = val;
218
- },
219
- /**
220
- * #action
221
- */
222
- setAutoscale(val) {
223
- self.autoscale = val;
224
- },
225
- /**
226
- * #action
227
- */
228
- setMaxScore(val) {
229
- self.constraints.max = val;
230
- },
231
- /**
232
- * #action
233
- */
234
- setRendererType(val) {
235
- self.rendererTypeNameState = val;
236
- },
237
- /**
238
- * #action
239
- */
240
- setMinScore(val) {
241
- self.constraints.min = val;
242
- },
243
- /**
244
- * #action
245
- */
246
- toggleCrossHatches() {
247
- self.displayCrossHatches = !self.displayCrossHatches;
248
- },
249
- /**
250
- * #action
251
- */
252
- setCrossHatches(cross) {
253
- self.displayCrossHatches = cross;
254
- },
255
57
  }))
256
58
  .views(self => ({
257
59
  /**
@@ -260,157 +62,18 @@ function stateModelFactory(pluginManager, configSchema) {
260
62
  get TooltipComponent() {
261
63
  return Tooltip_1.default;
262
64
  },
263
- /**
264
- * #getter
265
- */
266
- get adapterTypeName() {
267
- return self.adapterConfig.type;
268
- },
269
- /**
270
- * #getter
271
- */
272
- get rendererTypeNameSimple() {
273
- return self.rendererTypeNameState || (0, configuration_1.getConf)(self, 'defaultRendering');
274
- },
275
65
  /**
276
66
  * #getter
277
67
  */
278
68
  get rendererTypeName() {
279
- const name = this.rendererTypeNameSimple;
69
+ const name = self.rendererTypeNameSimple;
280
70
  const rendererType = rendererTypes.get(name);
281
71
  if (!rendererType) {
282
72
  throw new Error(`unknown renderer ${name}`);
283
73
  }
284
74
  return rendererType;
285
75
  },
286
- /**
287
- * #getter
288
- * subclasses can define these, as snpcoverage track does
289
- */
290
- get filters() {
291
- return undefined;
292
- },
293
- /**
294
- * #getter
295
- */
296
- get scaleType() {
297
- return self.scale || (0, configuration_1.getConf)(self, 'scaleType');
298
- },
299
- /**
300
- * #getter
301
- */
302
- get maxScore() {
303
- var _a;
304
- return (_a = self.constraints.max) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'maxScore');
305
- },
306
- /**
307
- * #getter
308
- */
309
- get minScore() {
310
- var _a;
311
- return (_a = self.constraints.min) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'minScore');
312
- },
313
76
  }))
314
- .views(self => ({
315
- /**
316
- * #getter
317
- */
318
- get rendererConfig() {
319
- const { color, displayCrossHatches, fill, minSize, negColor, posColor, summaryScoreMode, scaleType, rendererTypeName, } = self;
320
- const configBlob = (0, configuration_1.getConf)(self, ['renderers', rendererTypeName]) || {};
321
- return self.rendererType.configSchema.create({
322
- ...configBlob,
323
- ...(scaleType ? { scaleType } : {}),
324
- ...(fill !== undefined ? { filled: fill } : {}),
325
- ...(displayCrossHatches !== undefined
326
- ? { displayCrossHatches }
327
- : {}),
328
- ...(summaryScoreMode !== undefined ? { summaryScoreMode } : {}),
329
- ...(color !== undefined ? { color } : {}),
330
- ...(negColor !== undefined ? { negColor } : {}),
331
- ...(posColor !== undefined ? { posColor } : {}),
332
- ...(minSize !== undefined ? { minSize } : {}),
333
- }, (0, util_1.getEnv)(self));
334
- },
335
- }))
336
- .views(self => {
337
- let oldDomain = [0, 0];
338
- return {
339
- /**
340
- * #getter
341
- */
342
- get filled() {
343
- return (0, configuration_1.readConfObject)(self.rendererConfig, 'filled');
344
- },
345
- /**
346
- * #getter
347
- */
348
- get summaryScoreModeSetting() {
349
- return (0, configuration_1.readConfObject)(self.rendererConfig, 'summaryScoreMode');
350
- },
351
- /**
352
- * #getter
353
- */
354
- get domain() {
355
- const { stats, scaleType, minScore, maxScore } = self;
356
- if (!stats) {
357
- return undefined;
358
- }
359
- const ret = (0, util_2.getNiceDomain)({
360
- domain: [stats.scoreMin, stats.scoreMax],
361
- bounds: [minScore, maxScore],
362
- scaleType,
363
- });
364
- // avoid weird scalebar if log value and empty region displayed
365
- if (scaleType === 'log' && ret[1] === Number.MIN_VALUE) {
366
- return [0, Number.MIN_VALUE];
367
- }
368
- // avoid returning a new object if it matches the old value
369
- if (JSON.stringify(oldDomain) !== JSON.stringify(ret)) {
370
- oldDomain = ret;
371
- }
372
- return oldDomain;
373
- },
374
- /**
375
- * #getter
376
- */
377
- get needsScalebar() {
378
- return (self.rendererTypeName === 'XYPlotRenderer' ||
379
- self.rendererTypeName === 'LinePlotRenderer');
380
- },
381
- /**
382
- * #getter
383
- */
384
- get scaleOpts() {
385
- return {
386
- domain: this.domain,
387
- stats: self.stats,
388
- autoscaleType: this.autoscaleType,
389
- scaleType: self.scaleType,
390
- inverted: (0, configuration_1.getConf)(self, 'inverted'),
391
- };
392
- },
393
- /**
394
- * #getter
395
- */
396
- get canHaveFill() {
397
- return self.rendererTypeName === 'XYPlotRenderer';
398
- },
399
- /**
400
- * #getter
401
- */
402
- get autoscaleType() {
403
- var _a;
404
- return (_a = self.autoscale) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'autoscale');
405
- },
406
- /**
407
- * #getter
408
- */
409
- get displayCrossHatchesSetting() {
410
- return (0, configuration_1.readConfObject)(self.rendererConfig, 'displayCrossHatches');
411
- },
412
- };
413
- })
414
77
  .views(self => ({
415
78
  /**
416
79
  * #getter
@@ -434,13 +97,6 @@ function stateModelFactory(pluginManager, configSchema) {
434
97
  ? { ...ticks, values: domain }
435
98
  : ticks;
436
99
  },
437
- /**
438
- * #getter
439
- */
440
- get adapterCapabilities() {
441
- const type = self.adapterTypeName;
442
- return pluginManager.getAdapterType(type).adapterCapabilities;
443
- },
444
100
  }))
445
101
  .views(self => {
446
102
  const { renderProps: superRenderProps } = self;
@@ -468,14 +124,9 @@ function stateModelFactory(pluginManager, configSchema) {
468
124
  /**
469
125
  * #getter
470
126
  */
471
- get hasResolution() {
472
- return self.adapterCapabilities.includes('hasResolution');
473
- },
474
- /**
475
- * #getter
476
- */
477
- get hasGlobalStats() {
478
- return self.adapterCapabilities.includes('hasGlobalStats');
127
+ get needsScalebar() {
128
+ const { rendererTypeName: type } = self;
129
+ return type === 'XYPlotRenderer' || type === 'LinePlotRenderer';
479
130
  },
480
131
  /**
481
132
  * #getter
@@ -503,32 +154,10 @@ function stateModelFactory(pluginManager, configSchema) {
503
154
  trackMenuItems() {
504
155
  return [
505
156
  ...superTrackMenuItems(),
506
- ...(self.hasResolution
507
- ? [
508
- {
509
- label: 'Resolution',
510
- subMenu: [
511
- {
512
- label: 'Finer resolution',
513
- onClick: () => self.setResolution(self.resolution * 5),
514
- },
515
- {
516
- label: 'Coarser resolution',
517
- onClick: () => self.setResolution(self.resolution / 5),
518
- },
519
- ],
520
- },
521
- {
522
- label: 'Summary score mode',
523
- subMenu: ['min', 'max', 'avg', 'whiskers'].map(elt => ({
524
- label: elt,
525
- type: 'radio',
526
- checked: self.summaryScoreModeSetting === elt,
527
- onClick: () => self.setSummaryScoreMode(elt),
528
- })),
529
- },
530
- ]
531
- : []),
157
+ {
158
+ label: 'Score',
159
+ subMenu: self.scoreTrackMenuItems(),
160
+ },
532
161
  ...(self.canHaveFill
533
162
  ? [
534
163
  {
@@ -542,10 +171,6 @@ function stateModelFactory(pluginManager, configSchema) {
542
171
  },
543
172
  ]
544
173
  : []),
545
- {
546
- label: self.scaleType === 'log' ? 'Set linear scale' : 'Set log scale',
547
- onClick: () => self.toggleLogScale(),
548
- },
549
174
  ...(self.needsScalebar
550
175
  ? [
551
176
  {
@@ -569,33 +194,6 @@ function stateModelFactory(pluginManager, configSchema) {
569
194
  },
570
195
  ]
571
196
  : []),
572
- {
573
- label: 'Autoscale type',
574
- subMenu: [
575
- ['local', 'Local'],
576
- ...(self.hasGlobalStats
577
- ? [
578
- ['global', 'Global'],
579
- ['globalsd', 'Global ± 3σ'],
580
- ]
581
- : []),
582
- ['localsd', 'Local ± 3σ'],
583
- ].map(([val, label]) => ({
584
- label,
585
- type: 'radio',
586
- checked: self.autoscaleType === val,
587
- onClick: () => self.setAutoscale(val),
588
- })),
589
- },
590
- {
591
- label: 'Set min/max score',
592
- onClick: () => {
593
- (0, util_1.getSession)(self).queueDialog(handleClose => [
594
- SetMinMaxDlg,
595
- { model: self, handleClose },
596
- ]);
597
- },
598
- },
599
197
  {
600
198
  label: 'Set color',
601
199
  onClick: () => {
@@ -610,16 +208,8 @@ function stateModelFactory(pluginManager, configSchema) {
610
208
  };
611
209
  })
612
210
  .actions(self => {
613
- const { reload: superReload, renderSvg: superRenderSvg } = self;
211
+ const { renderSvg: superRenderSvg } = self;
614
212
  return {
615
- /**
616
- * #action
617
- * re-runs stats and refresh whole display on reload
618
- */
619
- async reload() {
620
- self.setError();
621
- superReload();
622
- },
623
213
  afterAttach() {
624
214
  (0, util_2.quantitativeStatsAutorun)(self);
625
215
  },
@@ -627,16 +217,10 @@ function stateModelFactory(pluginManager, configSchema) {
627
217
  * #action
628
218
  */
629
219
  async renderSvg(opts) {
630
- await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
631
- const { needsScalebar, stats } = self;
632
- const { offsetPx } = (0, util_1.getContainingView)(self);
633
- return (react_1.default.createElement(react_1.default.Fragment, null,
634
- react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
635
- needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
636
- react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
220
+ const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
221
+ return renderSvg(self, opts, superRenderSvg);
637
222
  },
638
223
  };
639
224
  });
640
225
  }
641
226
  exports.default = stateModelFactory;
642
- //# sourceMappingURL=model.js.map
@@ -0,0 +1,4 @@
1
+ import React from 'react';
2
+ import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
3
+ import { WiggleDisplayModel } from './model';
4
+ export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;
@@ -0,0 +1,20 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.renderSvg = void 0;
7
+ const react_1 = __importDefault(require("react"));
8
+ const util_1 = require("@jbrowse/core/util");
9
+ const mobx_1 = require("mobx");
10
+ const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
11
+ async function renderSvg(self, opts, superRenderSvg) {
12
+ await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
13
+ const { needsScalebar, stats } = self;
14
+ const { offsetPx } = (0, util_1.getContainingView)(self);
15
+ return (react_1.default.createElement(react_1.default.Fragment, null,
16
+ react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
17
+ needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
18
+ react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
19
+ }
20
+ exports.renderSvg = renderSvg;
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const util_1 = require("../util");
6
+ const util_1 = require("@jbrowse/core/util");
7
7
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
8
8
  const drawxy_1 = require("../drawxy");
9
9
  class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
@@ -39,4 +39,3 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
39
39
  }
40
40
  }
41
41
  exports.default = MultiXYPlotRenderer;
42
- //# sourceMappingURL=MultiDensityRenderer.js.map
@@ -17,4 +17,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiDensityRende
17
17
  explicitlyTyped: true,
18
18
  });
19
19
  exports.default = configSchema;
20
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -3,8 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ const util_1 = require("@jbrowse/core/util");
6
7
  const drawxy_1 = require("../drawxy");
7
- const util_1 = require("../util");
8
8
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
9
9
  class MultiLineRenderer extends WiggleBaseRenderer_1.default {
10
10
  // @ts-expect-error
@@ -28,4 +28,3 @@ class MultiLineRenderer extends WiggleBaseRenderer_1.default {
28
28
  }
29
29
  }
30
30
  exports.default = MultiLineRenderer;
31
- //# sourceMappingURL=MultiLineRenderer.js.map
@@ -36,4 +36,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiLineRenderer
36
36
  explicitlyTyped: true,
37
37
  });
38
38
  exports.default = configSchema;
39
- //# sourceMappingURL=configSchema.js.map
@@ -14,4 +14,3 @@ exports.default = (pluginManager) => {
14
14
  pluginManager,
15
15
  }));
16
16
  };
17
- //# sourceMappingURL=index.js.map
@@ -1,6 +1,7 @@
1
+ import React from 'react';
1
2
  import { DialogProps } from '@mui/material';
2
3
  declare function DraggableDialog(props: DialogProps & {
3
4
  title: string;
4
- }): JSX.Element;
5
+ }): React.JSX.Element;
5
6
  declare const _default: typeof DraggableDialog;
6
7
  export default _default;
@@ -40,4 +40,3 @@ function DraggableDialog(props) {
40
40
  children)));
41
41
  }
42
42
  exports.default = (0, mobx_react_1.observer)(DraggableDialog);
43
- //# sourceMappingURL=DraggableDialog.js.map
@@ -1,3 +1,4 @@
1
+ import React from 'react';
1
2
  import { Source } from '../../util';
2
3
  export default function SetColorDialog({ model, handleClose, }: {
3
4
  model: {
@@ -6,4 +7,4 @@ export default function SetColorDialog({ model, handleClose, }: {
6
7
  clearLayout: () => void;
7
8
  };
8
9
  handleClose: () => void;
9
- }): JSX.Element;
10
+ }): React.JSX.Element;
@@ -35,13 +35,13 @@ const clone_1 = __importDefault(require("clone"));
35
35
  // locals
36
36
  const DraggableDialog_1 = __importDefault(require("./DraggableDialog"));
37
37
  const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
38
- const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
39
38
  const util_2 = require("./util");
40
39
  // icons
41
40
  const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
42
41
  const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
43
42
  const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
44
43
  const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
44
+ const UriLink_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/UriLink"));
45
45
  const useStyles = (0, mui_1.makeStyles)()({
46
46
  content: {
47
47
  minWidth: 800,
@@ -143,7 +143,7 @@ function SourcesGrid({ rows, onChange, showTips, }) {
143
143
  sortingOrder: [null],
144
144
  renderCell: (params) => {
145
145
  const { value } = params;
146
- return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(BaseFeatureDetail_1.UriLink, { value: value })) : ((0, util_1.getStr)(value));
146
+ return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(UriLink_1.default, { value: value })) : ((0, util_1.getStr)(value));
147
147
  },
148
148
  // @ts-ignore
149
149
  width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
@@ -168,4 +168,3 @@ function SourcesGrid({ rows, onChange, showTips, }) {
168
168
  : rows);
169
169
  } }))));
170
170
  }
171
- //# sourceMappingURL=SetColorDialog.js.map