@jbrowse/plugin-wiggle 2.5.0 → 2.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (404) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
  2. package/dist/BigWigAdapter/configSchema.js +0 -1
  3. package/dist/BigWigAdapter/index.js +0 -1
  4. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
  5. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
  6. package/dist/CreateMultiWiggleExtension/index.js +0 -1
  7. package/dist/DensityRenderer/DensityRenderer.js +0 -1
  8. package/dist/DensityRenderer/configSchema.js +0 -1
  9. package/dist/DensityRenderer/index.js +0 -1
  10. package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -1
  11. package/dist/LinePlotRenderer/configSchema.js +0 -1
  12. package/dist/LinePlotRenderer/index.js +0 -1
  13. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  14. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
  15. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  16. package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
  17. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
  18. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  19. package/dist/LinearWiggleDisplay/index.js +27 -5
  20. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
  21. package/dist/LinearWiggleDisplay/models/configSchema.js +6 -68
  22. package/dist/LinearWiggleDisplay/models/model.d.ts +147 -342
  23. package/dist/LinearWiggleDisplay/models/model.js +17 -433
  24. package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  25. package/dist/LinearWiggleDisplay/models/renderSvg.js +20 -0
  26. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
  27. package/dist/MultiDensityRenderer/configSchema.js +0 -1
  28. package/dist/MultiDensityRenderer/index.js +0 -1
  29. package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
  30. package/dist/MultiLineRenderer/configSchema.js +0 -1
  31. package/dist/MultiLineRenderer/index.js +0 -1
  32. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
  33. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
  34. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  35. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -3
  36. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  37. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
  38. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
  39. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  40. package/dist/MultiLinearWiggleDisplay/components/util.js +0 -1
  41. package/dist/MultiLinearWiggleDisplay/index.js +25 -3
  42. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
  43. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -67
  44. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
  45. package/dist/MultiLinearWiggleDisplay/models/model.js +335 -509
  46. package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  47. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +19 -0
  48. package/dist/MultiQuantitativeTrack/configSchema.js +0 -1
  49. package/dist/MultiQuantitativeTrack/index.js +0 -1
  50. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  51. package/dist/MultiRowLineRenderer/configSchema.js +0 -1
  52. package/dist/MultiRowLineRenderer/index.js +0 -1
  53. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  54. package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -1
  55. package/dist/MultiRowXYPlotRenderer/index.js +0 -1
  56. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
  57. package/dist/MultiWiggleAdapter/configSchema.js +0 -1
  58. package/dist/MultiWiggleAdapter/index.js +0 -1
  59. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
  60. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
  61. package/dist/MultiWiggleAddTrackWidget/index.js +0 -1
  62. package/dist/MultiWiggleRendering.d.ts +2 -1
  63. package/dist/MultiWiggleRendering.js +0 -1
  64. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -3
  65. package/dist/MultiXYPlotRenderer/configSchema.js +0 -1
  66. package/dist/MultiXYPlotRenderer/index.js +0 -1
  67. package/dist/QuantitativeTrack/configSchema.js +0 -1
  68. package/dist/QuantitativeTrack/index.js +0 -1
  69. package/dist/Tooltip.d.ts +1 -1
  70. package/dist/Tooltip.js +0 -1
  71. package/dist/WiggleBaseRenderer.d.ts +1 -1
  72. package/dist/WiggleBaseRenderer.js +0 -1
  73. package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -1
  74. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
  75. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
  76. package/dist/WiggleRPC/rpcMethods.js +0 -1
  77. package/dist/WiggleRendering.d.ts +2 -1
  78. package/dist/WiggleRendering.js +0 -1
  79. package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -1
  80. package/dist/XYPlotRenderer/configSchema.js +0 -1
  81. package/dist/XYPlotRenderer/index.js +0 -1
  82. package/dist/configSchema.js +0 -1
  83. package/dist/drawxy.js +0 -1
  84. package/dist/index.d.ts +222 -198
  85. package/dist/index.js +0 -1
  86. package/dist/shared/SetMinMaxDialog.d.ts +2 -1
  87. package/dist/shared/SetMinMaxDialog.js +0 -1
  88. package/dist/shared/YScaleBar.d.ts +4 -2
  89. package/dist/shared/YScaleBar.js +1 -2
  90. package/dist/shared/configShared.d.ts +85 -0
  91. package/dist/shared/configShared.js +83 -0
  92. package/dist/shared/modelShared.d.ts +576 -0
  93. package/dist/shared/modelShared.js +479 -0
  94. package/dist/util.d.ts +0 -3
  95. package/dist/util.js +1 -12
  96. package/esm/BigWigAdapter/BigWigAdapter.js +2 -2
  97. package/esm/BigWigAdapter/configSchema.js +0 -1
  98. package/esm/BigWigAdapter/index.js +0 -1
  99. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
  100. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
  101. package/esm/CreateMultiWiggleExtension/index.js +0 -1
  102. package/esm/DensityRenderer/DensityRenderer.js +0 -1
  103. package/esm/DensityRenderer/configSchema.js +0 -1
  104. package/esm/DensityRenderer/index.js +0 -1
  105. package/esm/LinePlotRenderer/LinePlotRenderer.js +0 -1
  106. package/esm/LinePlotRenderer/configSchema.js +0 -1
  107. package/esm/LinePlotRenderer/index.js +0 -1
  108. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  109. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
  110. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  111. package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
  112. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
  113. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  114. package/esm/LinearWiggleDisplay/index.js +2 -3
  115. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
  116. package/esm/LinearWiggleDisplay/models/configSchema.js +3 -68
  117. package/esm/LinearWiggleDisplay/models/model.d.ts +147 -342
  118. package/esm/LinearWiggleDisplay/models/model.js +20 -436
  119. package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  120. package/esm/LinearWiggleDisplay/models/renderSvg.js +13 -0
  121. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
  122. package/esm/MultiDensityRenderer/configSchema.js +0 -1
  123. package/esm/MultiDensityRenderer/index.js +0 -1
  124. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
  125. package/esm/MultiLineRenderer/configSchema.js +0 -1
  126. package/esm/MultiLineRenderer/index.js +0 -1
  127. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
  128. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
  129. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  130. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -2
  131. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  132. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
  133. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
  134. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
  135. package/esm/MultiLinearWiggleDisplay/components/util.js +0 -1
  136. package/esm/MultiLinearWiggleDisplay/index.js +2 -3
  137. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
  138. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -67
  139. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
  140. package/esm/MultiLinearWiggleDisplay/models/model.js +337 -513
  141. package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  142. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +12 -0
  143. package/esm/MultiQuantitativeTrack/configSchema.js +0 -1
  144. package/esm/MultiQuantitativeTrack/index.js +0 -1
  145. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  146. package/esm/MultiRowLineRenderer/configSchema.js +0 -1
  147. package/esm/MultiRowLineRenderer/index.js +0 -1
  148. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  149. package/esm/MultiRowXYPlotRenderer/configSchema.js +0 -1
  150. package/esm/MultiRowXYPlotRenderer/index.js +0 -1
  151. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
  152. package/esm/MultiWiggleAdapter/configSchema.js +0 -1
  153. package/esm/MultiWiggleAdapter/index.js +0 -1
  154. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
  155. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
  156. package/esm/MultiWiggleAddTrackWidget/index.js +0 -1
  157. package/esm/MultiWiggleRendering.d.ts +2 -1
  158. package/esm/MultiWiggleRendering.js +0 -1
  159. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -2
  160. package/esm/MultiXYPlotRenderer/configSchema.js +0 -1
  161. package/esm/MultiXYPlotRenderer/index.js +0 -1
  162. package/esm/QuantitativeTrack/configSchema.js +0 -1
  163. package/esm/QuantitativeTrack/index.js +0 -1
  164. package/esm/Tooltip.d.ts +1 -1
  165. package/esm/Tooltip.js +0 -1
  166. package/esm/WiggleBaseRenderer.d.ts +1 -1
  167. package/esm/WiggleBaseRenderer.js +0 -1
  168. package/esm/WiggleRPC/MultiWiggleGetSources.js +0 -1
  169. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
  170. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
  171. package/esm/WiggleRPC/rpcMethods.js +0 -1
  172. package/esm/WiggleRendering.d.ts +2 -1
  173. package/esm/WiggleRendering.js +0 -1
  174. package/esm/XYPlotRenderer/XYPlotRenderer.js +0 -1
  175. package/esm/XYPlotRenderer/configSchema.js +0 -1
  176. package/esm/XYPlotRenderer/index.js +0 -1
  177. package/esm/configSchema.js +0 -1
  178. package/esm/drawxy.js +0 -1
  179. package/esm/index.d.ts +222 -198
  180. package/esm/index.js +0 -1
  181. package/esm/shared/SetMinMaxDialog.d.ts +2 -1
  182. package/esm/shared/SetMinMaxDialog.js +0 -1
  183. package/esm/shared/YScaleBar.d.ts +4 -2
  184. package/esm/shared/YScaleBar.js +1 -2
  185. package/esm/shared/configShared.d.ts +85 -0
  186. package/esm/shared/configShared.js +80 -0
  187. package/esm/shared/modelShared.d.ts +576 -0
  188. package/esm/shared/modelShared.js +453 -0
  189. package/esm/util.d.ts +0 -3
  190. package/esm/util.js +0 -10
  191. package/package.json +4 -5
  192. package/dist/BigWigAdapter/BigWigAdapter.js.map +0 -1
  193. package/dist/BigWigAdapter/configSchema.js.map +0 -1
  194. package/dist/BigWigAdapter/index.js.map +0 -1
  195. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
  196. package/dist/CreateMultiWiggleExtension/index.js.map +0 -1
  197. package/dist/DensityRenderer/DensityRenderer.js.map +0 -1
  198. package/dist/DensityRenderer/configSchema.js.map +0 -1
  199. package/dist/DensityRenderer/index.js.map +0 -1
  200. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
  201. package/dist/LinePlotRenderer/configSchema.js.map +0 -1
  202. package/dist/LinePlotRenderer/index.js.map +0 -1
  203. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  204. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
  205. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  206. package/dist/LinearWiggleDisplay/index.js.map +0 -1
  207. package/dist/LinearWiggleDisplay/models/configSchema.js.map +0 -1
  208. package/dist/LinearWiggleDisplay/models/model.js.map +0 -1
  209. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
  210. package/dist/MultiDensityRenderer/configSchema.js.map +0 -1
  211. package/dist/MultiDensityRenderer/index.js.map +0 -1
  212. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
  213. package/dist/MultiLineRenderer/configSchema.js.map +0 -1
  214. package/dist/MultiLineRenderer/index.js.map +0 -1
  215. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
  216. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  217. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
  218. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  219. package/dist/MultiLinearWiggleDisplay/components/util.js.map +0 -1
  220. package/dist/MultiLinearWiggleDisplay/index.js.map +0 -1
  221. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
  222. package/dist/MultiLinearWiggleDisplay/models/model.js.map +0 -1
  223. package/dist/MultiQuantitativeTrack/configSchema.js.map +0 -1
  224. package/dist/MultiQuantitativeTrack/index.js.map +0 -1
  225. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
  226. package/dist/MultiRowLineRenderer/configSchema.js.map +0 -1
  227. package/dist/MultiRowLineRenderer/index.js.map +0 -1
  228. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
  229. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
  230. package/dist/MultiRowXYPlotRenderer/index.js.map +0 -1
  231. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
  232. package/dist/MultiWiggleAdapter/configSchema.js.map +0 -1
  233. package/dist/MultiWiggleAdapter/index.js.map +0 -1
  234. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
  235. package/dist/MultiWiggleAddTrackWidget/index.js.map +0 -1
  236. package/dist/MultiWiggleRendering.js.map +0 -1
  237. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
  238. package/dist/MultiXYPlotRenderer/configSchema.js.map +0 -1
  239. package/dist/MultiXYPlotRenderer/index.js.map +0 -1
  240. package/dist/QuantitativeTrack/configSchema.js.map +0 -1
  241. package/dist/QuantitativeTrack/index.js.map +0 -1
  242. package/dist/Tooltip.js.map +0 -1
  243. package/dist/WiggleBaseRenderer.js.map +0 -1
  244. package/dist/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
  245. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
  246. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
  247. package/dist/WiggleRPC/rpcMethods.js.map +0 -1
  248. package/dist/WiggleRendering.js.map +0 -1
  249. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
  250. package/dist/XYPlotRenderer/configSchema.js.map +0 -1
  251. package/dist/XYPlotRenderer/index.js.map +0 -1
  252. package/dist/configSchema.js.map +0 -1
  253. package/dist/drawxy.js.map +0 -1
  254. package/dist/index.js.map +0 -1
  255. package/dist/shared/SetMinMaxDialog.js.map +0 -1
  256. package/dist/shared/YScaleBar.js.map +0 -1
  257. package/dist/util.js.map +0 -1
  258. package/esm/BigWigAdapter/BigWigAdapter.js.map +0 -1
  259. package/esm/BigWigAdapter/configSchema.js.map +0 -1
  260. package/esm/BigWigAdapter/index.js.map +0 -1
  261. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
  262. package/esm/CreateMultiWiggleExtension/index.js.map +0 -1
  263. package/esm/DensityRenderer/DensityRenderer.js.map +0 -1
  264. package/esm/DensityRenderer/configSchema.js.map +0 -1
  265. package/esm/DensityRenderer/index.js.map +0 -1
  266. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
  267. package/esm/LinePlotRenderer/configSchema.js.map +0 -1
  268. package/esm/LinePlotRenderer/index.js.map +0 -1
  269. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  270. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
  271. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  272. package/esm/LinearWiggleDisplay/index.js.map +0 -1
  273. package/esm/LinearWiggleDisplay/models/configSchema.js.map +0 -1
  274. package/esm/LinearWiggleDisplay/models/model.js.map +0 -1
  275. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
  276. package/esm/MultiDensityRenderer/configSchema.js.map +0 -1
  277. package/esm/MultiDensityRenderer/index.js.map +0 -1
  278. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
  279. package/esm/MultiLineRenderer/configSchema.js.map +0 -1
  280. package/esm/MultiLineRenderer/index.js.map +0 -1
  281. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
  282. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
  283. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
  284. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
  285. package/esm/MultiLinearWiggleDisplay/components/util.js.map +0 -1
  286. package/esm/MultiLinearWiggleDisplay/index.js.map +0 -1
  287. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
  288. package/esm/MultiLinearWiggleDisplay/models/model.js.map +0 -1
  289. package/esm/MultiQuantitativeTrack/configSchema.js.map +0 -1
  290. package/esm/MultiQuantitativeTrack/index.js.map +0 -1
  291. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
  292. package/esm/MultiRowLineRenderer/configSchema.js.map +0 -1
  293. package/esm/MultiRowLineRenderer/index.js.map +0 -1
  294. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
  295. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
  296. package/esm/MultiRowXYPlotRenderer/index.js.map +0 -1
  297. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
  298. package/esm/MultiWiggleAdapter/configSchema.js.map +0 -1
  299. package/esm/MultiWiggleAdapter/index.js.map +0 -1
  300. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
  301. package/esm/MultiWiggleAddTrackWidget/index.js.map +0 -1
  302. package/esm/MultiWiggleRendering.js.map +0 -1
  303. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
  304. package/esm/MultiXYPlotRenderer/configSchema.js.map +0 -1
  305. package/esm/MultiXYPlotRenderer/index.js.map +0 -1
  306. package/esm/QuantitativeTrack/configSchema.js.map +0 -1
  307. package/esm/QuantitativeTrack/index.js.map +0 -1
  308. package/esm/Tooltip.js.map +0 -1
  309. package/esm/WiggleBaseRenderer.js.map +0 -1
  310. package/esm/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
  311. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
  312. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
  313. package/esm/WiggleRPC/rpcMethods.js.map +0 -1
  314. package/esm/WiggleRendering.js.map +0 -1
  315. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
  316. package/esm/XYPlotRenderer/configSchema.js.map +0 -1
  317. package/esm/XYPlotRenderer/index.js.map +0 -1
  318. package/esm/configSchema.js.map +0 -1
  319. package/esm/drawxy.js.map +0 -1
  320. package/esm/index.js.map +0 -1
  321. package/esm/shared/SetMinMaxDialog.js.map +0 -1
  322. package/esm/shared/YScaleBar.js.map +0 -1
  323. package/esm/util.js.map +0 -1
  324. package/src/BigWigAdapter/BigWigAdapter.test.ts +0 -66
  325. package/src/BigWigAdapter/BigWigAdapter.ts +0 -114
  326. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +0 -117
  327. package/src/BigWigAdapter/configSchema.ts +0 -34
  328. package/src/BigWigAdapter/index.ts +0 -20
  329. package/src/BigWigAdapter/test_data/volvox.bw +0 -0
  330. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +0 -68
  331. package/src/CreateMultiWiggleExtension/index.ts +0 -66
  332. package/src/DensityRenderer/DensityRenderer.test.ts +0 -62
  333. package/src/DensityRenderer/DensityRenderer.ts +0 -14
  334. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.ts.snap +0 -21
  335. package/src/DensityRenderer/configSchema.ts +0 -22
  336. package/src/DensityRenderer/index.ts +0 -17
  337. package/src/LinePlotRenderer/LinePlotRenderer.ts +0 -19
  338. package/src/LinePlotRenderer/configSchema.ts +0 -30
  339. package/src/LinePlotRenderer/index.ts +0 -16
  340. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +0 -107
  341. package/src/LinearWiggleDisplay/components/Tooltip.tsx +0 -59
  342. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -53
  343. package/src/LinearWiggleDisplay/index.ts +0 -26
  344. package/src/LinearWiggleDisplay/models/configSchema.ts +0 -116
  345. package/src/LinearWiggleDisplay/models/model.tsx +0 -713
  346. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +0 -39
  347. package/src/MultiDensityRenderer/configSchema.ts +0 -21
  348. package/src/MultiDensityRenderer/index.ts +0 -16
  349. package/src/MultiLineRenderer/MultiLineRenderer.ts +0 -29
  350. package/src/MultiLineRenderer/configSchema.ts +0 -39
  351. package/src/MultiLineRenderer/index.ts +0 -17
  352. package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +0 -71
  353. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +0 -287
  354. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +0 -77
  355. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -254
  356. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +0 -1
  357. package/src/MultiLinearWiggleDisplay/components/util.test.ts +0 -69
  358. package/src/MultiLinearWiggleDisplay/components/util.ts +0 -33
  359. package/src/MultiLinearWiggleDisplay/index.ts +0 -21
  360. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +0 -142
  361. package/src/MultiLinearWiggleDisplay/models/model.tsx +0 -708
  362. package/src/MultiQuantitativeTrack/configSchema.ts +0 -23
  363. package/src/MultiQuantitativeTrack/index.ts +0 -20
  364. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +0 -36
  365. package/src/MultiRowLineRenderer/configSchema.ts +0 -42
  366. package/src/MultiRowLineRenderer/index.ts +0 -16
  367. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +0 -43
  368. package/src/MultiRowXYPlotRenderer/configSchema.ts +0 -56
  369. package/src/MultiRowXYPlotRenderer/index.ts +0 -16
  370. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +0 -125
  371. package/src/MultiWiggleAdapter/configSchema.ts +0 -32
  372. package/src/MultiWiggleAdapter/index.ts +0 -24
  373. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  374. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +0 -130
  375. package/src/MultiWiggleAddTrackWidget/index.ts +0 -17
  376. package/src/MultiWiggleRendering.tsx +0 -125
  377. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +0 -32
  378. package/src/MultiXYPlotRenderer/configSchema.ts +0 -54
  379. package/src/MultiXYPlotRenderer/index.ts +0 -17
  380. package/src/QuantitativeTrack/configSchema.ts +0 -23
  381. package/src/QuantitativeTrack/index.ts +0 -20
  382. package/src/Tooltip.tsx +0 -123
  383. package/src/WiggleBaseRenderer.tsx +0 -91
  384. package/src/WiggleRPC/MultiWiggleGetSources.ts +0 -68
  385. package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +0 -44
  386. package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +0 -73
  387. package/src/WiggleRPC/rpcMethods.ts +0 -3
  388. package/src/WiggleRendering.test.js +0 -21
  389. package/src/WiggleRendering.tsx +0 -76
  390. package/src/XYPlotRenderer/XYPlotRenderer.test.ts +0 -52
  391. package/src/XYPlotRenderer/XYPlotRenderer.ts +0 -37
  392. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.ts.snap +0 -21
  393. package/src/XYPlotRenderer/configSchema.ts +0 -55
  394. package/src/XYPlotRenderer/index.ts +0 -20
  395. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -15
  396. package/src/__snapshots__/index.test.ts.snap +0 -3
  397. package/src/configSchema.ts +0 -70
  398. package/src/drawxy.ts +0 -388
  399. package/src/index.test.ts +0 -16
  400. package/src/index.ts +0 -130
  401. package/src/shared/SetMinMaxDialog.tsx +0 -88
  402. package/src/shared/YScaleBar.tsx +0 -25
  403. package/src/util.test.ts +0 -43
  404. package/src/util.ts +0 -327
@@ -1,11 +1,11 @@
1
1
  import React from 'react';
2
2
  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
- import { Feature } from '@jbrowse/core/util';
4
3
  import { Instance } from 'mobx-state-tree';
5
4
  import PluginManager from '@jbrowse/core/PluginManager';
5
+ import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
6
6
  /**
7
7
  * #stateModel LinearWiggleDisplay
8
- * Extends `BaseLinearDisplay`
8
+ * extends `SharedWiggleMixin`
9
9
  */
10
10
  declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
11
11
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -13,6 +13,10 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
13
13
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
14
14
  } & {
15
15
  heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
16
+ } & {
17
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
18
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
19
+ } & {
16
20
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
17
21
  key: import("mobx-state-tree").ISimpleType<string>;
18
22
  region: import("mobx-state-tree").IModelType<{
@@ -29,10 +33,12 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
29
33
  isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
30
34
  isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
31
35
  }, {
32
- renderInProgress: AbortController | undefined;
36
+ renderInProgress: AbortController | undefined; /**
37
+ * #property
38
+ */
33
39
  filled: boolean;
34
40
  reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
35
- features: Map<string, Feature> | undefined;
41
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
36
42
  layout: any;
37
43
  status: string;
38
44
  error: unknown;
@@ -45,26 +51,22 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
45
51
  } & {
46
52
  doReload(): void;
47
53
  afterAttach(): void;
48
- setStatus(message: string): void;
54
+ setStatus(message: string): void; /**
55
+ * #method
56
+ */
49
57
  setLoading(abortController: AbortController): void;
50
58
  setMessage(messageText: string): void;
51
59
  setRendered(props: {
52
60
  reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
53
- features: Map<string, Feature>;
61
+ features: Map<string, import("@jbrowse/core/util").Feature>;
54
62
  layout: any;
55
63
  maxHeightReached: boolean;
56
- renderProps: any; /**
57
- * #action
58
- */
64
+ renderProps: any;
59
65
  } | undefined): void;
60
66
  setError(error: unknown): void;
61
67
  reload(): void;
62
68
  beforeDestroy(): void;
63
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
64
- * #property
65
- */
66
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
67
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
69
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
68
70
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
69
71
  maxFeatureScreenDensity: {
70
72
  type: string;
@@ -89,72 +91,32 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
89
91
  };
90
92
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
91
93
  } & {
92
- /**
93
- * #property
94
- */
95
- type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
96
- /**
97
- * #property
98
- */
99
- configuration: AnyConfigurationSchemaType;
100
- /**
101
- * #property
102
- */
103
94
  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
104
- /**
105
- * #property
106
- */
107
95
  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
108
- /**
109
- * #property
110
- */
111
96
  fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
112
- /**
113
- * #property
114
- */
115
97
  minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
116
- /**
117
- * #property
118
- */
119
98
  color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
120
- /**
121
- * #property
122
- */
123
99
  posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
124
- /**
125
- * #property
126
- */
127
100
  negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
128
- /**
129
- * #property
130
- */
131
101
  summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
132
- /**
133
- * #property
134
- */
135
102
  rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
136
- /**
137
- * #property
138
- */
139
103
  scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
140
- /**
141
- * #property
142
- */
143
104
  autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
144
- /**
145
- * #property
146
- */
147
105
  displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
148
- /**
149
- * #property
150
- */
151
106
  constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
152
107
  max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
153
108
  min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
154
109
  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
110
+ configuration: AnyConfigurationSchemaType;
111
+ } & {
112
+ /**
113
+ * #property
114
+ */
115
+ type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
155
116
  }, {
156
117
  rendererTypeName: string;
157
118
  error: unknown;
119
+ message: string | undefined;
158
120
  } & {
159
121
  readonly RenderingComponent: React.FC<{
160
122
  model: {
@@ -164,6 +126,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
164
126
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
165
127
  rendererTypeName: string;
166
128
  error: unknown;
129
+ message: string | undefined;
167
130
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
168
131
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
169
132
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -171,6 +134,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
171
134
  }, {
172
135
  rendererTypeName: string;
173
136
  error: unknown;
137
+ message: string | undefined;
174
138
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
175
139
  onHorizontalScroll?: Function | undefined;
176
140
  blockState?: Record<string, any> | undefined;
@@ -182,47 +146,72 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
182
146
  rpcDriverName: string | undefined;
183
147
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
184
148
  rendererTypeName: string;
185
- error: unknown; /**
186
- * #property
187
- */
149
+ error: unknown;
150
+ message: string | undefined;
188
151
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
189
152
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
190
153
  type: import("mobx-state-tree").ISimpleType<string>;
191
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
192
- * #property
193
- */
154
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
194
155
  }, {
195
156
  rendererTypeName: string;
196
157
  error: unknown;
158
+ message: string | undefined;
197
159
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
198
160
  }> | null;
199
161
  readonly adapterConfig: any;
200
162
  readonly parentTrack: any;
201
- renderProps(): any;
163
+ renderProps(): any; /**
164
+ * #getter
165
+ */
202
166
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
203
167
  readonly DisplayMessageComponent: React.FC<any> | undefined;
204
168
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
205
169
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
206
- regionCannotBeRendered(): undefined; /**
207
- * #action
208
- */
170
+ regionCannotBeRendered(): null;
209
171
  } & {
172
+ setMessage(arg?: string | undefined): void;
210
173
  setError(error?: unknown): void;
211
174
  setRpcDriverName(rpcDriverName: string): void;
212
175
  reload(): void;
213
176
  } & {
214
- currBpPerPx: number;
215
177
  scrollTop: number;
216
- message: string;
217
- featureIdUnderMouse: string | undefined;
218
- /**
219
- * #property
220
- */
221
- contextMenuFeature: Feature | undefined;
178
+ } & {
179
+ readonly height: number;
180
+ } & {
181
+ setScrollTop(scrollTop: number): void;
182
+ setHeight(displayHeight: number): number;
183
+ resizeHeight(distance: number): number;
184
+ } & {
222
185
  featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
223
186
  featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
187
+ currStatsBpPerPx: number;
188
+ } & {
189
+ readonly currentBytesRequested: number; /**
190
+ * #getter
191
+ */
192
+ readonly currentFeatureScreenDensity: number;
193
+ readonly maxFeatureScreenDensity: any;
194
+ readonly featureDensityStatsReady: boolean;
195
+ readonly maxAllowableBytes: number;
196
+ } & {
197
+ afterAttach(): void;
198
+ } & {
199
+ setCurrStatsBpPerPx(n: number): void;
200
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
201
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
202
+ setFeatureDensityStatsP(arg: any): void;
203
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
204
+ clearFeatureDensityStats(): void;
205
+ } & {
206
+ readonly regionTooLarge: boolean;
207
+ readonly regionTooLargeReason: string;
208
+ } & {
209
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
210
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
211
+ } & {
212
+ featureIdUnderMouse: string | undefined;
213
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
224
214
  } & {
225
- readonly height: number;
226
215
  readonly blockType: "dynamicBlocks" | "staticBlocks";
227
216
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
228
217
  } & {
@@ -231,58 +220,27 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
231
220
  readonly selectedFeatureId: string | undefined;
232
221
  readonly DisplayMessageComponent: React.FC<any> | undefined;
233
222
  } & {
234
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
235
- readonly featureUnderMouse: Feature | undefined;
223
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
224
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
236
225
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
237
226
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
238
227
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
239
- readonly currentBytesRequested: number;
240
- readonly currentFeatureScreenDensity: number;
241
- readonly maxFeatureScreenDensity: any;
242
- readonly featureDensityStatsReady: boolean; /**
243
- * #getter
244
- */
245
- readonly maxAllowableBytes: number;
246
228
  } & {
247
- setMessage(message: string): void;
248
- } & {
249
- afterAttach(): void;
250
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
251
- setFeatureDensityStatsP(arg: any): void;
252
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
253
- clearFeatureDensityStats(): void;
254
- setHeight(displayHeight: number): number;
255
- resizeHeight(distance: number): number;
256
- setScrollTop(scrollTop: number): void;
257
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
258
229
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
259
- setCurrBpPerPx(n: number): void;
260
230
  deleteBlock(key: string): void;
261
- selectFeature(feature: Feature): void;
231
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
262
232
  clearFeatureSelection(): void;
263
233
  setFeatureIdUnderMouse(feature?: string | undefined): void;
264
- reload(): void;
265
- setContextMenuFeature(feature?: Feature | undefined): void;
266
- } & {
267
- readonly regionTooLarge: boolean;
268
- readonly regionTooLargeReason: string;
269
- } & {
270
- reload(): Promise<void>; /**
271
- * #method
272
- */
234
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
273
235
  } & {
274
- afterAttach(): void;
236
+ reload(): Promise<void>;
275
237
  } & {
276
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
277
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
278
238
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
279
239
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
280
240
  renderProps(): any;
281
241
  } & {
282
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
283
- overrideHeight: number;
284
- theme: import("@mui/material").ThemeOptions;
285
- }): Promise<JSX.Element>;
242
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
243
+ afterAttach(): void;
286
244
  } & {
287
245
  message: string | undefined;
288
246
  stats: {
@@ -291,143 +249,46 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
291
249
  } | undefined;
292
250
  statsFetchInProgress: AbortController | undefined;
293
251
  } & {
294
- /**
295
- * #action
296
- */
297
252
  updateQuantitativeStats(stats: {
298
253
  scoreMin: number;
299
254
  scoreMax: number;
300
255
  }): void;
301
- /**
302
- * #action
303
- */
304
- setColor(color?: string): void;
305
- /**
306
- * #action
307
- */
308
- setPosColor(color?: string): void;
309
- /**
310
- * #action
311
- */
312
- setNegColor(color?: string): void;
313
- /**
314
- * #action
315
- */
256
+ setColor(color?: string | undefined): void;
257
+ setPosColor(color?: string | undefined): void;
258
+ setNegColor(color?: string | undefined): void;
316
259
  setLoading(aborter: AbortController): void;
317
- /**
318
- * #action
319
- * this overrides the BaseLinearDisplayModel to avoid popping up a
320
- * feature detail display, but still sets the feature selection on the
321
- * model so listeners can detect a click
322
- */
323
- selectFeature(feature: Feature): void;
324
- /**
325
- * #action
326
- */
260
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
327
261
  setResolution(res: number): void;
328
- /**
329
- * #action
330
- */
331
262
  setFill(fill: number): void;
332
- /**
333
- * #action
334
- */
335
263
  toggleLogScale(): void;
336
- /**
337
- * #action
338
- */
339
- setScaleType(scale?: string): void;
340
- /**
341
- * #action
342
- */
264
+ setScaleType(scale?: string | undefined): void;
343
265
  setSummaryScoreMode(val: string): void;
344
- /**
345
- * #action
346
- */
347
266
  setAutoscale(val: string): void;
348
- /**
349
- * #action
350
- */
351
- setMaxScore(val?: number): void;
352
- /**
353
- * #action
354
- */
267
+ setMaxScore(val?: number | undefined): void;
355
268
  setRendererType(val: string): void;
356
- /**
357
- * #action
358
- */
359
- setMinScore(val?: number): void;
360
- /**
361
- * #action
362
- */
269
+ setMinScore(val?: number | undefined): void;
363
270
  toggleCrossHatches(): void;
364
- /**
365
- * #action
366
- */
367
271
  setCrossHatches(cross: boolean): void;
368
272
  } & {
369
- /**
370
- * #getter
371
- */
372
- readonly TooltipComponent: React.FC<{}>;
373
- /**
374
- * #getter
375
- */
376
273
  readonly adapterTypeName: any;
377
- /**
378
- * #getter
379
- */
380
274
  readonly rendererTypeNameSimple: any;
381
- /**
382
- * #getter
383
- */
384
- readonly rendererTypeName: string;
385
- /**
386
- * #getter
387
- * subclasses can define these, as snpcoverage track does
388
- */
389
275
  readonly filters: undefined;
390
- /**
391
- * #getter
392
- */
393
276
  readonly scaleType: any;
394
- /**
395
- * #getter
396
- */
397
277
  readonly maxScore: any;
398
- /**
399
- * #getter
400
- */
401
278
  readonly minScore: any;
402
279
  } & {
403
- /**
404
- * #getter
405
- */
280
+ readonly adapterCapabilities: string[];
406
281
  readonly rendererConfig: {
407
282
  [x: string]: any;
408
283
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
409
284
  setSubschema(slotName: string, data: unknown): any;
410
285
  } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
286
+ readonly autoscaleType: any;
411
287
  } & {
412
- /**
413
- * #getter
414
- */
415
- readonly filled: any;
416
- /**
417
- * #getter
418
- */
419
- readonly summaryScoreModeSetting: any;
420
- /**
421
- * #getter
422
- */
423
288
  readonly domain: number[] | undefined;
424
- /**
425
- * #getter
426
- */
427
- readonly needsScalebar: boolean;
428
- /**
429
- * #getter
430
- */
289
+ } & {
290
+ readonly filled: boolean;
291
+ readonly summaryScoreModeSetting: string;
431
292
  readonly scaleOpts: {
432
293
  domain: number[] | undefined;
433
294
  stats: {
@@ -438,18 +299,43 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
438
299
  scaleType: any;
439
300
  inverted: any;
440
301
  };
441
- /**
442
- * #getter
443
- */
444
302
  readonly canHaveFill: boolean;
303
+ readonly displayCrossHatchesSetting: boolean;
304
+ readonly hasResolution: boolean;
305
+ readonly hasGlobalStats: boolean;
306
+ } & {
307
+ scoreTrackMenuItems(): ({
308
+ label: string;
309
+ subMenu: {
310
+ label: string;
311
+ onClick: () => void;
312
+ }[];
313
+ onClick?: undefined;
314
+ } | {
315
+ label: string;
316
+ subMenu: {
317
+ label: string;
318
+ type: string;
319
+ checked: boolean;
320
+ onClick: () => void;
321
+ }[];
322
+ onClick?: undefined;
323
+ } | {
324
+ label: string;
325
+ onClick: () => void;
326
+ subMenu?: undefined;
327
+ })[];
328
+ } & {
329
+ reload(): Promise<void>;
330
+ } & {
445
331
  /**
446
332
  * #getter
447
333
  */
448
- readonly autoscaleType: any;
334
+ readonly TooltipComponent: React.FC<{}>;
449
335
  /**
450
336
  * #getter
451
337
  */
452
- readonly displayCrossHatchesSetting: any;
338
+ readonly rendererTypeName: string;
453
339
  } & {
454
340
  /**
455
341
  * #getter
@@ -460,10 +346,6 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
460
346
  format: (d: import("d3-scale").NumberValue) => string;
461
347
  position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
462
348
  } | undefined;
463
- /**
464
- * #getter
465
- */
466
- readonly adapterCapabilities: string[];
467
349
  } & {
468
350
  /**
469
351
  * #method
@@ -472,11 +354,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
472
354
  /**
473
355
  * #getter
474
356
  */
475
- readonly hasResolution: boolean;
476
- /**
477
- * #getter
478
- */
479
- readonly hasGlobalStats: boolean;
357
+ readonly needsScalebar: boolean;
480
358
  /**
481
359
  * #getter
482
360
  */
@@ -486,6 +364,32 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
486
364
  * #method
487
365
  */
488
366
  trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
367
+ label: string;
368
+ subMenu: ({
369
+ label: string;
370
+ subMenu: {
371
+ label: string;
372
+ onClick: () => void;
373
+ }[];
374
+ onClick?: undefined;
375
+ } | {
376
+ label: string;
377
+ subMenu: {
378
+ label: string;
379
+ type: string;
380
+ checked: boolean;
381
+ onClick: () => void;
382
+ }[];
383
+ onClick?: undefined;
384
+ } | {
385
+ label: string;
386
+ onClick: () => void;
387
+ subMenu?: undefined;
388
+ })[];
389
+ type?: undefined;
390
+ checked?: undefined;
391
+ onClick?: undefined;
392
+ } | {
489
393
  label: string;
490
394
  subMenu: {
491
395
  label: string;
@@ -499,116 +403,17 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
499
403
  } | {
500
404
  type: string;
501
405
  label: string;
502
- checked: any;
406
+ checked: boolean;
503
407
  onClick: () => void;
504
408
  subMenu?: undefined;
505
409
  })[];
506
410
  } & {
507
- /**
508
- * #action
509
- * re-runs stats and refresh whole display on reload
510
- */
511
- reload(): Promise<void>;
512
411
  afterAttach(): void;
513
412
  /**
514
413
  * #action
515
414
  */
516
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
517
- overrideHeight: number;
518
- theme: import("@mui/material").ThemeOptions;
519
- }): Promise<JSX.Element>;
520
- }, {
521
- type: string;
522
- } & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
523
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
524
- type: import("mobx-state-tree").ISimpleType<string>;
525
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
526
- } & {
527
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
528
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
529
- key: import("mobx-state-tree").ISimpleType<string>;
530
- region: import("mobx-state-tree").IModelType<{
531
- refName: import("mobx-state-tree").ISimpleType<string>;
532
- start: import("mobx-state-tree").ISimpleType<number>;
533
- end: import("mobx-state-tree").ISimpleType<number>;
534
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
535
- } & {
536
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
537
- }, {
538
- setRefName(newRefName: string): void;
539
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
540
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
541
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
542
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
543
- }, {
544
- renderInProgress: AbortController | undefined;
545
- filled: boolean;
546
- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
547
- features: Map<string, Feature> | undefined;
548
- layout: any;
549
- status: string;
550
- error: unknown;
551
- message: string | undefined;
552
- maxHeightReached: boolean;
553
- ReactComponent: ({ model, }: {
554
- model: any;
555
- }) => any;
556
- renderProps: any;
557
- } & {
558
- doReload(): void;
559
- afterAttach(): void;
560
- setStatus(message: string): void;
561
- setLoading(abortController: AbortController): void;
562
- setMessage(messageText: string): void;
563
- setRendered(props: {
564
- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
565
- features: Map<string, Feature>;
566
- layout: any;
567
- maxHeightReached: boolean;
568
- renderProps: any; /**
569
- * #action
570
- */
571
- } | undefined): void;
572
- setError(error: unknown): void;
573
- reload(): void;
574
- beforeDestroy(): void;
575
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
576
- * #property
577
- */
578
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
579
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
580
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
581
- maxFeatureScreenDensity: {
582
- type: string;
583
- description: string;
584
- defaultValue: number;
585
- };
586
- fetchSizeLimit: {
587
- type: string;
588
- defaultValue: number;
589
- description: string;
590
- };
591
- height: {
592
- type: string;
593
- defaultValue: number;
594
- description: string;
595
- };
596
- mouseover: {
597
- type: string;
598
- description: string;
599
- defaultValue: string;
600
- contextVariable: string[];
601
- };
602
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
603
- }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
604
- type: string;
605
- id: string;
606
- configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
607
- rpcDriverName: string | undefined;
608
- heightPreConfig: number | undefined;
609
- userBpPerPxLimit: number | undefined;
610
- userByteSizeLimit: number | undefined;
611
- } & import("mobx-state-tree")._NotCustomized>;
415
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
416
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
612
417
  export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
613
418
  export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
614
419
  export default stateModelFactory;