@jbrowse/plugin-wiggle 2.5.0 → 2.6.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
- package/dist/BigWigAdapter/configSchema.js +0 -1
- package/dist/BigWigAdapter/index.js +0 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
- package/dist/CreateMultiWiggleExtension/index.js +0 -1
- package/dist/DensityRenderer/DensityRenderer.js +0 -1
- package/dist/DensityRenderer/configSchema.js +0 -1
- package/dist/DensityRenderer/index.js +0 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js +0 -1
- package/dist/LinePlotRenderer/configSchema.js +0 -1
- package/dist/LinePlotRenderer/index.js +0 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/dist/LinearWiggleDisplay/index.js +27 -5
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
- package/dist/LinearWiggleDisplay/models/configSchema.js +6 -68
- package/dist/LinearWiggleDisplay/models/model.d.ts +147 -342
- package/dist/LinearWiggleDisplay/models/model.js +17 -433
- package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/LinearWiggleDisplay/models/renderSvg.js +20 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/dist/MultiDensityRenderer/configSchema.js +0 -1
- package/dist/MultiDensityRenderer/index.js +0 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/dist/MultiLineRenderer/configSchema.js +0 -1
- package/dist/MultiLineRenderer/index.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -3
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +0 -1
- package/dist/MultiLinearWiggleDisplay/index.js +25 -3
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -67
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
- package/dist/MultiLinearWiggleDisplay/models/model.js +335 -509
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +19 -0
- package/dist/MultiQuantitativeTrack/configSchema.js +0 -1
- package/dist/MultiQuantitativeTrack/index.js +0 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/dist/MultiRowLineRenderer/configSchema.js +0 -1
- package/dist/MultiRowLineRenderer/index.js +0 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/dist/MultiRowXYPlotRenderer/configSchema.js +0 -1
- package/dist/MultiRowXYPlotRenderer/index.js +0 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
- package/dist/MultiWiggleAdapter/configSchema.js +0 -1
- package/dist/MultiWiggleAdapter/index.js +0 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
- package/dist/MultiWiggleAddTrackWidget/index.js +0 -1
- package/dist/MultiWiggleRendering.d.ts +2 -1
- package/dist/MultiWiggleRendering.js +0 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -3
- package/dist/MultiXYPlotRenderer/configSchema.js +0 -1
- package/dist/MultiXYPlotRenderer/index.js +0 -1
- package/dist/QuantitativeTrack/configSchema.js +0 -1
- package/dist/QuantitativeTrack/index.js +0 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/Tooltip.js +0 -1
- package/dist/WiggleBaseRenderer.d.ts +1 -1
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.js +0 -1
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
- package/dist/WiggleRPC/rpcMethods.js +0 -1
- package/dist/WiggleRendering.d.ts +2 -1
- package/dist/WiggleRendering.js +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +0 -1
- package/dist/XYPlotRenderer/configSchema.js +0 -1
- package/dist/XYPlotRenderer/index.js +0 -1
- package/dist/configSchema.js +0 -1
- package/dist/drawxy.js +0 -1
- package/dist/index.d.ts +222 -198
- package/dist/index.js +0 -1
- package/dist/shared/SetMinMaxDialog.d.ts +2 -1
- package/dist/shared/SetMinMaxDialog.js +0 -1
- package/dist/shared/YScaleBar.d.ts +4 -2
- package/dist/shared/YScaleBar.js +1 -2
- package/dist/shared/configShared.d.ts +85 -0
- package/dist/shared/configShared.js +83 -0
- package/dist/shared/modelShared.d.ts +576 -0
- package/dist/shared/modelShared.js +479 -0
- package/dist/util.d.ts +0 -3
- package/dist/util.js +1 -12
- package/esm/BigWigAdapter/BigWigAdapter.js +2 -2
- package/esm/BigWigAdapter/configSchema.js +0 -1
- package/esm/BigWigAdapter/index.js +0 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +0 -1
- package/esm/CreateMultiWiggleExtension/index.js +0 -1
- package/esm/DensityRenderer/DensityRenderer.js +0 -1
- package/esm/DensityRenderer/configSchema.js +0 -1
- package/esm/DensityRenderer/index.js +0 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.js +0 -1
- package/esm/LinePlotRenderer/configSchema.js +0 -1
- package/esm/LinePlotRenderer/index.js +0 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +0 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/esm/LinearWiggleDisplay/index.js +2 -3
- package/esm/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
- package/esm/LinearWiggleDisplay/models/configSchema.js +3 -68
- package/esm/LinearWiggleDisplay/models/model.d.ts +147 -342
- package/esm/LinearWiggleDisplay/models/model.js +20 -436
- package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/LinearWiggleDisplay/models/renderSvg.js +13 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/esm/MultiDensityRenderer/configSchema.js +0 -1
- package/esm/MultiDensityRenderer/index.js +0 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.js +0 -1
- package/esm/MultiLineRenderer/index.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -2
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +0 -1
- package/esm/MultiLinearWiggleDisplay/index.js +2 -3
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -67
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
- package/esm/MultiLinearWiggleDisplay/models/model.js +337 -513
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +12 -0
- package/esm/MultiQuantitativeTrack/configSchema.js +0 -1
- package/esm/MultiQuantitativeTrack/index.js +0 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.js +0 -1
- package/esm/MultiRowLineRenderer/index.js +0 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.js +0 -1
- package/esm/MultiRowXYPlotRenderer/index.js +0 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +0 -1
- package/esm/MultiWiggleAdapter/configSchema.js +0 -1
- package/esm/MultiWiggleAdapter/index.js +0 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -2
- package/esm/MultiWiggleAddTrackWidget/index.js +0 -1
- package/esm/MultiWiggleRendering.d.ts +2 -1
- package/esm/MultiWiggleRendering.js +0 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -2
- package/esm/MultiXYPlotRenderer/configSchema.js +0 -1
- package/esm/MultiXYPlotRenderer/index.js +0 -1
- package/esm/QuantitativeTrack/configSchema.js +0 -1
- package/esm/QuantitativeTrack/index.js +0 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/Tooltip.js +0 -1
- package/esm/WiggleBaseRenderer.d.ts +1 -1
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.js +0 -1
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +0 -1
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +0 -1
- package/esm/WiggleRPC/rpcMethods.js +0 -1
- package/esm/WiggleRendering.d.ts +2 -1
- package/esm/WiggleRendering.js +0 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js +0 -1
- package/esm/XYPlotRenderer/configSchema.js +0 -1
- package/esm/XYPlotRenderer/index.js +0 -1
- package/esm/configSchema.js +0 -1
- package/esm/drawxy.js +0 -1
- package/esm/index.d.ts +222 -198
- package/esm/index.js +0 -1
- package/esm/shared/SetMinMaxDialog.d.ts +2 -1
- package/esm/shared/SetMinMaxDialog.js +0 -1
- package/esm/shared/YScaleBar.d.ts +4 -2
- package/esm/shared/YScaleBar.js +1 -2
- package/esm/shared/configShared.d.ts +85 -0
- package/esm/shared/configShared.js +80 -0
- package/esm/shared/modelShared.d.ts +576 -0
- package/esm/shared/modelShared.js +453 -0
- package/esm/util.d.ts +0 -3
- package/esm/util.js +0 -10
- package/package.json +4 -5
- package/dist/BigWigAdapter/BigWigAdapter.js.map +0 -1
- package/dist/BigWigAdapter/configSchema.js.map +0 -1
- package/dist/BigWigAdapter/index.js.map +0 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
- package/dist/CreateMultiWiggleExtension/index.js.map +0 -1
- package/dist/DensityRenderer/DensityRenderer.js.map +0 -1
- package/dist/DensityRenderer/configSchema.js.map +0 -1
- package/dist/DensityRenderer/index.js.map +0 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
- package/dist/LinePlotRenderer/configSchema.js.map +0 -1
- package/dist/LinePlotRenderer/index.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/dist/LinearWiggleDisplay/index.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/dist/LinearWiggleDisplay/models/model.js.map +0 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
- package/dist/MultiDensityRenderer/configSchema.js.map +0 -1
- package/dist/MultiDensityRenderer/index.js.map +0 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
- package/dist/MultiLineRenderer/configSchema.js.map +0 -1
- package/dist/MultiLineRenderer/index.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/index.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +0 -1
- package/dist/MultiQuantitativeTrack/configSchema.js.map +0 -1
- package/dist/MultiQuantitativeTrack/index.js.map +0 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
- package/dist/MultiRowLineRenderer/configSchema.js.map +0 -1
- package/dist/MultiRowLineRenderer/index.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
- package/dist/MultiRowXYPlotRenderer/index.js.map +0 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
- package/dist/MultiWiggleAdapter/configSchema.js.map +0 -1
- package/dist/MultiWiggleAdapter/index.js.map +0 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
- package/dist/MultiWiggleAddTrackWidget/index.js.map +0 -1
- package/dist/MultiWiggleRendering.js.map +0 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
- package/dist/MultiXYPlotRenderer/configSchema.js.map +0 -1
- package/dist/MultiXYPlotRenderer/index.js.map +0 -1
- package/dist/QuantitativeTrack/configSchema.js.map +0 -1
- package/dist/QuantitativeTrack/index.js.map +0 -1
- package/dist/Tooltip.js.map +0 -1
- package/dist/WiggleBaseRenderer.js.map +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
- package/dist/WiggleRPC/rpcMethods.js.map +0 -1
- package/dist/WiggleRendering.js.map +0 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
- package/dist/XYPlotRenderer/configSchema.js.map +0 -1
- package/dist/XYPlotRenderer/index.js.map +0 -1
- package/dist/configSchema.js.map +0 -1
- package/dist/drawxy.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/dist/shared/SetMinMaxDialog.js.map +0 -1
- package/dist/shared/YScaleBar.js.map +0 -1
- package/dist/util.js.map +0 -1
- package/esm/BigWigAdapter/BigWigAdapter.js.map +0 -1
- package/esm/BigWigAdapter/configSchema.js.map +0 -1
- package/esm/BigWigAdapter/index.js.map +0 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +0 -1
- package/esm/CreateMultiWiggleExtension/index.js.map +0 -1
- package/esm/DensityRenderer/DensityRenderer.js.map +0 -1
- package/esm/DensityRenderer/configSchema.js.map +0 -1
- package/esm/DensityRenderer/index.js.map +0 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.js.map +0 -1
- package/esm/LinePlotRenderer/configSchema.js.map +0 -1
- package/esm/LinePlotRenderer/index.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/esm/LinearWiggleDisplay/index.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/esm/LinearWiggleDisplay/models/model.js.map +0 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +0 -1
- package/esm/MultiDensityRenderer/configSchema.js.map +0 -1
- package/esm/MultiDensityRenderer/index.js.map +0 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +0 -1
- package/esm/MultiLineRenderer/configSchema.js.map +0 -1
- package/esm/MultiLineRenderer/index.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/index.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +0 -1
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +0 -1
- package/esm/MultiQuantitativeTrack/configSchema.js.map +0 -1
- package/esm/MultiQuantitativeTrack/index.js.map +0 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +0 -1
- package/esm/MultiRowLineRenderer/configSchema.js.map +0 -1
- package/esm/MultiRowLineRenderer/index.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/configSchema.js.map +0 -1
- package/esm/MultiRowXYPlotRenderer/index.js.map +0 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +0 -1
- package/esm/MultiWiggleAdapter/configSchema.js.map +0 -1
- package/esm/MultiWiggleAdapter/index.js.map +0 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +0 -1
- package/esm/MultiWiggleAddTrackWidget/index.js.map +0 -1
- package/esm/MultiWiggleRendering.js.map +0 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +0 -1
- package/esm/MultiXYPlotRenderer/configSchema.js.map +0 -1
- package/esm/MultiXYPlotRenderer/index.js.map +0 -1
- package/esm/QuantitativeTrack/configSchema.js.map +0 -1
- package/esm/QuantitativeTrack/index.js.map +0 -1
- package/esm/Tooltip.js.map +0 -1
- package/esm/WiggleBaseRenderer.js.map +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.js.map +0 -1
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +0 -1
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +0 -1
- package/esm/WiggleRPC/rpcMethods.js.map +0 -1
- package/esm/WiggleRendering.js.map +0 -1
- package/esm/XYPlotRenderer/XYPlotRenderer.js.map +0 -1
- package/esm/XYPlotRenderer/configSchema.js.map +0 -1
- package/esm/XYPlotRenderer/index.js.map +0 -1
- package/esm/configSchema.js.map +0 -1
- package/esm/drawxy.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/esm/shared/SetMinMaxDialog.js.map +0 -1
- package/esm/shared/YScaleBar.js.map +0 -1
- package/esm/util.js.map +0 -1
- package/src/BigWigAdapter/BigWigAdapter.test.ts +0 -66
- package/src/BigWigAdapter/BigWigAdapter.ts +0 -114
- package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +0 -117
- package/src/BigWigAdapter/configSchema.ts +0 -34
- package/src/BigWigAdapter/index.ts +0 -20
- package/src/BigWigAdapter/test_data/volvox.bw +0 -0
- package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +0 -68
- package/src/CreateMultiWiggleExtension/index.ts +0 -66
- package/src/DensityRenderer/DensityRenderer.test.ts +0 -62
- package/src/DensityRenderer/DensityRenderer.ts +0 -14
- package/src/DensityRenderer/__snapshots__/DensityRenderer.test.ts.snap +0 -21
- package/src/DensityRenderer/configSchema.ts +0 -22
- package/src/DensityRenderer/index.ts +0 -17
- package/src/LinePlotRenderer/LinePlotRenderer.ts +0 -19
- package/src/LinePlotRenderer/configSchema.ts +0 -30
- package/src/LinePlotRenderer/index.ts +0 -16
- package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +0 -107
- package/src/LinearWiggleDisplay/components/Tooltip.tsx +0 -59
- package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -53
- package/src/LinearWiggleDisplay/index.ts +0 -26
- package/src/LinearWiggleDisplay/models/configSchema.ts +0 -116
- package/src/LinearWiggleDisplay/models/model.tsx +0 -713
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +0 -39
- package/src/MultiDensityRenderer/configSchema.ts +0 -21
- package/src/MultiDensityRenderer/index.ts +0 -16
- package/src/MultiLineRenderer/MultiLineRenderer.ts +0 -29
- package/src/MultiLineRenderer/configSchema.ts +0 -39
- package/src/MultiLineRenderer/index.ts +0 -17
- package/src/MultiLinearWiggleDisplay/components/DraggableDialog.tsx +0 -71
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +0 -287
- package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +0 -77
- package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +0 -254
- package/src/MultiLinearWiggleDisplay/components/declare.d.ts +0 -1
- package/src/MultiLinearWiggleDisplay/components/util.test.ts +0 -69
- package/src/MultiLinearWiggleDisplay/components/util.ts +0 -33
- package/src/MultiLinearWiggleDisplay/index.ts +0 -21
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +0 -142
- package/src/MultiLinearWiggleDisplay/models/model.tsx +0 -708
- package/src/MultiQuantitativeTrack/configSchema.ts +0 -23
- package/src/MultiQuantitativeTrack/index.ts +0 -20
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +0 -36
- package/src/MultiRowLineRenderer/configSchema.ts +0 -42
- package/src/MultiRowLineRenderer/index.ts +0 -16
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +0 -43
- package/src/MultiRowXYPlotRenderer/configSchema.ts +0 -56
- package/src/MultiRowXYPlotRenderer/index.ts +0 -16
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +0 -125
- package/src/MultiWiggleAdapter/configSchema.ts +0 -32
- package/src/MultiWiggleAdapter/index.ts +0 -24
- package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +0 -130
- package/src/MultiWiggleAddTrackWidget/index.ts +0 -17
- package/src/MultiWiggleRendering.tsx +0 -125
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +0 -32
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- package/src/QuantitativeTrack/configSchema.ts +0 -23
- package/src/QuantitativeTrack/index.ts +0 -20
- package/src/Tooltip.tsx +0 -123
- package/src/WiggleBaseRenderer.tsx +0 -91
- package/src/WiggleRPC/MultiWiggleGetSources.ts +0 -68
- package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +0 -44
- package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +0 -73
- package/src/WiggleRPC/rpcMethods.ts +0 -3
- package/src/WiggleRendering.test.js +0 -21
- package/src/WiggleRendering.tsx +0 -76
- package/src/XYPlotRenderer/XYPlotRenderer.test.ts +0 -52
- package/src/XYPlotRenderer/XYPlotRenderer.ts +0 -37
- package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.ts.snap +0 -21
- package/src/XYPlotRenderer/configSchema.ts +0 -55
- package/src/XYPlotRenderer/index.ts +0 -20
- package/src/__snapshots__/WiggleRendering.test.js.snap +0 -15
- package/src/__snapshots__/index.test.ts.snap +0 -3
- package/src/configSchema.ts +0 -70
- package/src/drawxy.ts +0 -388
- package/src/index.test.ts +0 -16
- package/src/index.ts +0 -130
- package/src/shared/SetMinMaxDialog.tsx +0 -88
- package/src/shared/YScaleBar.tsx +0 -25
- package/src/util.test.ts +0 -43
- package/src/util.ts +0 -327
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-
{"version":3,"file":"SetMinMaxDialog.js","sourceRoot":"","sources":["../../src/shared/SetMinMaxDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,MAAM,CAAC,OAAO,UAAU,YAAY,CAAC,KASpC;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAE/C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IACD,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IAED,MAAM,EAAE,GACN,GAAG,KAAK,EAAE,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC;QACpE,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG;QACb,CAAC,CAAC,IAAI,CAAA;IAEV,MAAM,KAAK,GACT,SAAS,KAAK,KAAK,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;IAE5E,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,6BAA6B;QACpE,oBAAC,aAAa;YACZ,oBAAC,UAAU,gCAAmC;YAC7C,CAAC,EAAE,CAAC,CAAC,CAAC,CACL,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,0CAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAEP,CAAC,KAAK,CAAC,CAAC,CAAC,CACR,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,uDAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B;YACF,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B,CACY;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,EACzB,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../src/shared/YScaleBar.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAA0B,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAA;AAE7E,eAAe,QAAQ,CAAC,UAAU,EAChC,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,oBAAC,IAAI,OACC,KAAK,EACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,EAAE,EACxD,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,EACpC,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,GAC9B,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA"}
|
package/esm/util.js.map
DELETED
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC/D,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EACL,gBAAgB,EAChB,UAAU,EACV,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAGtD,OAAO,EAAyB,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAI5E,MAAM,CAAC,MAAM,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,MAAM,UAAU,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,WAAW,EAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,QAAQ,EAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,aAAa,EAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AACD;;;;GAIG;AACH,MAAM,UAAU,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,WAAW,EAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,aAAa,EAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAED,MAAM,UAAU,OAAO,CAAI,KAAU,EAAE,SAA2B;;IAChE,MAAM,MAAM,GAAG,EAA4B,CAAA;IAC3C,KAAK,MAAM,KAAK,IAAI,KAAK,EAAE;QACzB,MAAM,KAAK,GAAG,CAAC,MAAM,MAAC,SAAS,CAAC,KAAK,CAAC,MAAvB,MAAM,OAAuB,EAAE,EAAC,CAAA;QAC/C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;KAClB;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,IAKC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAsB,CAAC,MAAM,UAAU,CAAC,IAAI,CACvD,SAAS,EACT,kCAAkC,EAClC,MAAM,CACP,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,uCAAuC,EACvC;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK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@@ -1,66 +0,0 @@
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1
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-
import { toArray } from 'rxjs/operators'
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import { firstValueFrom } from 'rxjs'
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import BigWigAdapter from './BigWigAdapter'
|
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4
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-
import configSchema from './configSchema'
|
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5
|
-
|
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6
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-
describe('adapter can fetch features from volvox.bw', () => {
|
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7
|
-
let adapter: BigWigAdapter
|
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8
|
-
beforeEach(() => {
|
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9
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adapter = new BigWigAdapter(
|
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10
|
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configSchema.create({
|
|
11
|
-
bigWigLocation: {
|
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12
|
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localPath: require.resolve('./test_data/volvox.bw'),
|
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13
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-
locationType: 'LocalPathLocation',
|
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14
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-
},
|
|
15
|
-
}),
|
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16
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-
)
|
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17
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-
})
|
|
18
|
-
it('test basic aspects of getfeatures', async () => {
|
|
19
|
-
const features = adapter.getFeatures({
|
|
20
|
-
refName: 'ctgA',
|
|
21
|
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start: 0,
|
|
22
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end: 20000,
|
|
23
|
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assemblyName: 'volvox',
|
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})
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25
|
-
expect(await adapter.refIdToName(0)).toBe('ctgA')
|
|
26
|
-
expect(await adapter.refIdToName(1)).toBe(undefined)
|
|
27
|
-
expect(await adapter.hasDataForRefName('ctgA')).toBe(true)
|
|
28
|
-
expect(await adapter.hasDataForRefName('ctgB')).toBe(false)
|
|
29
|
-
|
|
30
|
-
const featuresArray = await firstValueFrom(features.pipe(toArray()))
|
|
31
|
-
const featuresJsonArray = featuresArray.map(f => f.toJSON())
|
|
32
|
-
expect(featuresJsonArray.slice(1000, 1010)).toMatchSnapshot()
|
|
33
|
-
})
|
|
34
|
-
it('adapter can fetch stats from volvox.bw', async () => {
|
|
35
|
-
expect(await adapter.getGlobalStats()).toMatchSnapshot()
|
|
36
|
-
})
|
|
37
|
-
it('get region stats', async () => {
|
|
38
|
-
expect(
|
|
39
|
-
await adapter.getRegionQuantitativeStats({
|
|
40
|
-
refName: 'ctgA',
|
|
41
|
-
start: 10000,
|
|
42
|
-
end: 40000,
|
|
43
|
-
assemblyName: 'volvox',
|
|
44
|
-
}),
|
|
45
|
-
).toMatchSnapshot()
|
|
46
|
-
})
|
|
47
|
-
|
|
48
|
-
it('get local stats', async () => {
|
|
49
|
-
expect(
|
|
50
|
-
await adapter.getMultiRegionQuantitativeStats([
|
|
51
|
-
{
|
|
52
|
-
refName: 'ctgA',
|
|
53
|
-
start: 10000,
|
|
54
|
-
end: 39999,
|
|
55
|
-
assemblyName: 'volvox',
|
|
56
|
-
},
|
|
57
|
-
{
|
|
58
|
-
refName: 'ctgB',
|
|
59
|
-
start: 0,
|
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end: 99,
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assemblyName: 'volvox',
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},
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]),
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).toMatchSnapshot()
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})
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})
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@@ -1,114 +0,0 @@
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import { BigWig } from '@gmod/bbi'
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import {
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BaseFeatureDataAdapter,
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BaseOptions,
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} from '@jbrowse/core/data_adapters/BaseAdapter'
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import { AugmentedRegion as Region } from '@jbrowse/core/util/types'
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import { openLocation } from '@jbrowse/core/util/io'
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import { updateStatus, Feature } from '@jbrowse/core/util'
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import { ObservableCreate } from '@jbrowse/core/util/rxjs'
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import {
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rectifyStats,
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UnrectifiedQuantitativeStats,
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} from '@jbrowse/core/util/stats'
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interface WiggleOptions extends BaseOptions {
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resolution?: number
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}
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export default class BigWigAdapter extends BaseFeatureDataAdapter {
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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private setupP?: Promise<{ bigwig: BigWig; header: any }>
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public static capabilities = [
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'hasResolution',
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'hasLocalStats',
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'hasGlobalStats',
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]
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private async setupPre(opts?: BaseOptions) {
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const { statusCallback = () => {} } = opts || {}
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const bigwig = new BigWig({
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filehandle: openLocation(
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this.getConf('bigWigLocation'),
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this.pluginManager,
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),
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})
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const header = await updateStatus(
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'Downloading bigwig header',
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statusCallback,
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() => bigwig.getHeader(opts),
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)
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return { bigwig, header }
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}
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async setup(opts?: BaseOptions) {
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if (!this.setupP) {
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this.setupP = this.setupPre(opts).catch(e => {
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this.setupP = undefined
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throw e
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})
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}
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return this.setupP
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}
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|
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public async getRefNames(opts?: BaseOptions) {
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const { header } = await this.setup(opts)
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return Object.keys(header.refsByName)
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}
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public async refIdToName(refId: number) {
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const { header } = await this.setup()
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return header.refsByNumber[refId]?.name
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}
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public async getGlobalStats(opts?: BaseOptions) {
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const { header } = await this.setup(opts)
|
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return rectifyStats(header.totalSummary as UnrectifiedQuantitativeStats)
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}
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public getFeatures(region: Region, opts: WiggleOptions = {}) {
|
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const { refName, start, end } = region
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const {
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bpPerPx = 0,
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signal,
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resolution = 1,
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statusCallback = () => {},
|
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} = opts
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return ObservableCreate<Feature>(async observer => {
|
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|
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statusCallback('Downloading bigwig data')
|
|
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|
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const source = this.getConf('source')
|
|
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|
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const { bigwig } = await this.setup(opts)
|
|
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|
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const feats = await bigwig.getFeatures(refName, start, end, {
|
|
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|
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...opts,
|
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basesPerSpan: bpPerPx / resolution,
|
|
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|
-
})
|
|
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|
-
|
|
87
|
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for (const data of feats) {
|
|
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|
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if (source) {
|
|
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|
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// @ts-expect-error
|
|
90
|
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data.source = source
|
|
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|
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}
|
|
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|
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const uniqueId = `${source}:${region.refName}:${data.start}-${data.end}`
|
|
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|
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// @ts-expect-error
|
|
94
|
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data.refName = refName
|
|
95
|
-
data.uniqueId = uniqueId
|
|
96
|
-
observer.next({
|
|
97
|
-
// @ts-expect-error
|
|
98
|
-
get: (str: string) => (data as Record<string, unknown>)[str],
|
|
99
|
-
id: () => uniqueId,
|
|
100
|
-
// @ts-expect-error
|
|
101
|
-
toJSON: () => data,
|
|
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|
-
})
|
|
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|
-
}
|
|
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|
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observer.complete()
|
|
105
|
-
}, signal)
|
|
106
|
-
}
|
|
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|
-
|
|
108
|
-
// always render bigwig instead of calculating a feature density for it
|
|
109
|
-
async getMultiRegionFeatureDensityStats(_regions: Region[]) {
|
|
110
|
-
return { featureDensity: 0 }
|
|
111
|
-
}
|
|
112
|
-
|
|
113
|
-
public freeResources(): void {}
|
|
114
|
-
}
|
|
@@ -1,117 +0,0 @@
|
|
|
1
|
-
// Jest Snapshot v1, https://goo.gl/fbAQLP
|
|
2
|
-
|
|
3
|
-
exports[`adapter can fetch features from volvox.bw adapter can fetch stats from volvox.bw 1`] = `
|
|
4
|
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{
|
|
5
|
-
"basesCovered": 49984,
|
|
6
|
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"featureDensity": 0.00002000640204865557,
|
|
7
|
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"scoreMax": 38,
|
|
8
|
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"scoreMean": 19.197983354673497,
|
|
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|
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"scoreMin": 1,
|
|
10
|
-
"scoreStdDev": 4.55961443138808,
|
|
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|
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"scoreSum": 959592,
|
|
12
|
-
"scoreSumSquares": 19461382,
|
|
13
|
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}
|
|
14
|
-
`;
|
|
15
|
-
|
|
16
|
-
exports[`adapter can fetch features from volvox.bw get local stats 1`] = `
|
|
17
|
-
{
|
|
18
|
-
"basesCovered": 30000,
|
|
19
|
-
"featureCount": 30000,
|
|
20
|
-
"featureDensity": 1,
|
|
21
|
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"scoreMax": 38,
|
|
22
|
-
"scoreMean": 19.297233333333335,
|
|
23
|
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"scoreMin": 0,
|
|
24
|
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"scoreStdDev": 4.380942680236127,
|
|
25
|
-
"scoreSum": 578917,
|
|
26
|
-
"scoreSumSquares": 11747257,
|
|
27
|
-
}
|
|
28
|
-
`;
|
|
29
|
-
|
|
30
|
-
exports[`adapter can fetch features from volvox.bw get region stats 1`] = `
|
|
31
|
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{
|
|
32
|
-
"basesCovered": 30001,
|
|
33
|
-
"featureCount": 30001,
|
|
34
|
-
"featureDensity": 1,
|
|
35
|
-
"scoreMax": 38,
|
|
36
|
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"scoreMean": 19.297356754774842,
|
|
37
|
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"scoreMin": 5,
|
|
38
|
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"scoreStdDev": 4.380921822290578,
|
|
39
|
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"scoreSum": 578940,
|
|
40
|
-
"scoreSumSquares": 11747786,
|
|
41
|
-
}
|
|
42
|
-
`;
|
|
43
|
-
|
|
44
|
-
exports[`adapter can fetch features from volvox.bw test basic aspects of getfeatures 1`] = `
|
|
45
|
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[
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|
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|
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{
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|
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"end": 1003,
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"refName": "ctgA",
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|
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"score": 18,
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"start": 1002,
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|
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"uniqueId": ":ctgA:1002-1003",
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},
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{
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"end": 1004,
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"refName": "ctgA",
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|
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"score": 18,
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"start": 1003,
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"uniqueId": ":ctgA:1003-1004",
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|
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},
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|
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{
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"end": 1005,
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|
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"refName": "ctgA",
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|
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"score": 18,
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|
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"start": 1004,
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|
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"uniqueId": ":ctgA:1004-1005",
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|
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},
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|
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|
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{
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|
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"end": 1006,
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"refName": "ctgA",
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"score": 19,
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"start": 1005,
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|
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"uniqueId": ":ctgA:1005-1006",
|
|
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|
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},
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|
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|
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{
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|
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|
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"end": 1007,
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|
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|
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"refName": "ctgA",
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|
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|
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"score": 20,
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|
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|
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"start": 1006,
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|
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"uniqueId": ":ctgA:1006-1007",
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|
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|
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},
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|
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|
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{
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|
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"end": 1008,
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|
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"refName": "ctgA",
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|
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|
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"score": 20,
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|
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|
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"start": 1007,
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|
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|
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"uniqueId": ":ctgA:1007-1008",
|
|
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|
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},
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|
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|
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{
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|
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|
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"end": 1009,
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|
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|
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"refName": "ctgA",
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|
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|
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"score": 20,
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|
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"start": 1008,
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|
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|
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"uniqueId": ":ctgA:1008-1009",
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|
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|
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},
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|
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|
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{
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|
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|
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"end": 1010,
|
|
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|
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"refName": "ctgA",
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|
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|
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"score": 20,
|
|
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|
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"start": 1009,
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|
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|
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"uniqueId": ":ctgA:1009-1010",
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|
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|
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},
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|
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|
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{
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|
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|
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"end": 1011,
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|
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|
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"refName": "ctgA",
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|
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|
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"score": 20,
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|
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|
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"start": 1010,
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|
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|
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"uniqueId": ":ctgA:1010-1011",
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|
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|
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},
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|
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|
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{
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|
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|
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"end": 1012,
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|
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|
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"refName": "ctgA",
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|
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|
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"score": 19,
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|
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|
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"start": 1011,
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|
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|
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"uniqueId": ":ctgA:1011-1012",
|
|
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|
-
},
|
|
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|
-
]
|
|
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|
-
`;
|