@jbrowse/plugin-wiggle 2.5.0 → 2.6.2

package/src/LinearWiggleDisplay/models/configSchema.ts

@@ -1,116 +0,0 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import { baseLinearDisplayConfigSchema } from '@jbrowse/plugin-linear-genome-view'
-import { types } from 'mobx-state-tree'
-import PluginManager from '@jbrowse/core/PluginManager'
-
-/**
- * #config LinearWiggleDisplay
- */
-function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
-
-export default function WiggleConfigFactory(pluginManager: PluginManager) {
-  const XYPlotRendererConfigSchema =
-    pluginManager.getRendererType('XYPlotRenderer').configSchema
-  const DensityRendererConfigSchema =
-    pluginManager.getRendererType('DensityRenderer').configSchema
-  const LinePlotRendererConfigSchema =
-    pluginManager.getRendererType('LinePlotRenderer').configSchema
-
-  return ConfigurationSchema(
-    'LinearWiggleDisplay',
-    {
-      /**
-       * #slot
-       */
-      autoscale: {
-        type: 'stringEnum',
-        defaultValue: 'local',
-        model: types.enumeration('Autoscale type', [
-          'global',
-          'local',
-          'globalsd',
-          'localsd',
-          'zscore',
-        ]),
-        description:
-          'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
-      },
-
-      /**
-       * #slot
-       */
-      minimalTicks: {
-        type: 'boolean',
-        defaultValue: false,
-        description: 'use the minimal amount of ticks',
-      },
-
-      /**
-       * #slot
-       */
-      minScore: {
-        type: 'number',
-        defaultValue: Number.MIN_VALUE,
-        description: 'minimum value for the y-scale',
-      },
-      /**
-       * #slot
-       */
-      maxScore: {
-        type: 'number',
-        description: 'maximum value for the y-scale',
-        defaultValue: Number.MAX_VALUE,
-      },
-      /**
-       * #slot
-       */
-      numStdDev: {
-        type: 'number',
-        description:
-          'number of standard deviations to use for autoscale types globalsd or localsd',
-        defaultValue: 3,
-      },
-      /**
-       * #slot
-       */
-      scaleType: {
-        type: 'stringEnum',
-        model: types.enumeration('Scale type', ['linear', 'log']), // todo zscale
-        description: 'The type of scale to use',
-        defaultValue: 'linear',
-      },
-      /**
-       * #slot
-       */
-      inverted: {
-        type: 'boolean',
-        description: 'draw upside down',
-        defaultValue: false,
-      },
-
-      /**
-       * #slot
-       */
-      defaultRendering: {
-        type: 'stringEnum',
-        model: types.enumeration('Rendering', ['density', 'xyplot', 'line']),
-        defaultValue: 'xyplot',
-      },
-      /**
-       * #slot
-       */
-      renderers: ConfigurationSchema('RenderersConfiguration', {
-        DensityRenderer: DensityRendererConfigSchema,
-        XYPlotRenderer: XYPlotRendererConfigSchema,
-        LinePlotRenderer: LinePlotRendererConfigSchema,
-      }),
-    },
-    {
-      /**
-       * #baseConfiguration
-       */
-      baseConfiguration: baseLinearDisplayConfigSchema,
-      explicitlyTyped: true,
-    },
-  )
-}