@jbrowse/plugin-wiggle 2.5.0 → 2.6.2

package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts

@@ -0,0 +1,4 @@
+import React from 'react';
+import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
+import { WiggleDisplayModel } from './model';
+export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;

package/esm/MultiLinearWiggleDisplay/models/renderSvg.js

@@ -0,0 +1,12 @@
+import React from 'react';
+import { getContainingView } from '@jbrowse/core/util';
+import { when } from 'mobx';
+import { StatBars } from '../components/WiggleDisplayComponent';
+export async function renderSvg(self, opts, superRenderSvg) {
+    await when(() => !!self.stats && !!self.regionCannotBeRenderedText);
+    const { offsetPx } = getContainingView(self);
+    return (React.createElement(React.Fragment, null,
+        React.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
+        React.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
+            React.createElement(StatBars, { model: self, orientation: "left", exportSVG: true }))));
+}

package/esm/MultiQuantitativeTrack/configSchema.js

@@ -13,4 +13,3 @@ const configSchema = (pluginManager) => {
     });
 };
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiQuantitativeTrack/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js

@@ -1,4 +1,4 @@
-import { groupBy } from '../util';
+import { groupBy } from '@jbrowse/core/util';
 import { drawLine } from '../drawxy';
 import WiggleBaseRenderer from '../WiggleBaseRenderer';
 export default class MultiRowLineRenderer extends WiggleBaseRenderer {
@@ -30,4 +30,3 @@ export default class MultiRowLineRenderer extends WiggleBaseRenderer {
         return { reducedFeatures: feats };
     }
 }
-//# sourceMappingURL=MultiRowLineRenderer.js.map

package/esm/MultiRowLineRenderer/configSchema.js

@@ -31,4 +31,3 @@ const configSchema = ConfigurationSchema('MultiRowLineRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiRowLineRenderer/index.js

@@ -9,4 +9,3 @@ export default (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js

@@ -1,4 +1,4 @@
-import { groupBy } from '../util';
+import { groupBy } from '@jbrowse/core/util';
 import { drawXY } from '../drawxy';
 import WiggleBaseRenderer from '../WiggleBaseRenderer';
 export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
@@ -36,4 +36,3 @@ export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
         return { reducedFeatures: feats };
     }
 }
-//# sourceMappingURL=MultiRowXYPlotRenderer.js.map

package/esm/MultiRowXYPlotRenderer/configSchema.js

@@ -45,4 +45,3 @@ const configSchema = ConfigurationSchema('MultiRowXYPlotRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiRowXYPlotRenderer/index.js

@@ -9,4 +9,3 @@ export default (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js

@@ -87,4 +87,3 @@ MultiWiggleAdapter.capabilities = [
     'hasGlobalStats',
 ];
 export default MultiWiggleAdapter;
-//# sourceMappingURL=MultiWiggleAdapter.js.map

package/esm/MultiWiggleAdapter/configSchema.js

@@ -22,4 +22,3 @@ const MultiWiggleAdapter = ConfigurationSchema('MultiWiggleAdapter', {
     },
 }, { explicitlyTyped: true });
 export default MultiWiggleAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiWiggleAdapter/index.js

@@ -16,4 +16,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./MultiWiggleAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts

@@ -1,4 +1,5 @@
+import React from 'react';
 import { AddTrackModel } from '@jbrowse/plugin-data-management';
 export default function MultiWiggleWidget({ model }: {
     model: AddTrackModel;
-}): JSX.Element;
+}): React.JSX.Element;

package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js

@@ -46,7 +46,7 @@ export default function MultiWiggleWidget({ model }) {
                 var _a;
                 const session = getSession(model);
                 const trackId = [
-                    `${trackName.toLowerCase().replace(/ /g, '_')}-${Date.now()}`,
+                    `${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
                     `${session.adminMode ? '' : '-sessionTrack'}`,
                 ].join('');
                 // allow list of bigwigs in JSON format or line-by-line
@@ -84,4 +84,3 @@ export default function MultiWiggleWidget({ model }) {
                 "to apply e.g. the color attribute to the view"),
             React.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
 }
-//# sourceMappingURL=AddTrackWorkflow.js.map

package/esm/MultiWiggleAddTrackWidget/index.js

@@ -9,4 +9,3 @@ export default (pm) => {
         stateModel: types.model({}),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MultiWiggleRendering.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 import { Source } from './util';
@@ -15,6 +16,6 @@ declare function WiggleRendering(props: {
     displayModel: {
         isMultiRow: boolean;
     };
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof WiggleRendering;
 export default _default;

package/esm/MultiWiggleRendering.js

@@ -72,4 +72,3 @@ function WiggleRendering(props) {
         React.createElement(PrerenderedCanvas, { ...props })));
 }
 export default observer(WiggleRendering);
-//# sourceMappingURL=MultiWiggleRendering.js.map

package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js

@@ -1,5 +1,6 @@
+import { groupBy } from '@jbrowse/core/util';
 import { drawXY } from '../drawxy';
-import { groupBy, YSCALEBAR_LABEL_OFFSET } from '../util';
+import { YSCALEBAR_LABEL_OFFSET } from '../util';
 import WiggleBaseRenderer from '../WiggleBaseRenderer';
 export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
     // @ts-expect-error
@@ -25,4 +26,3 @@ export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
         return { reducedFeatures: feats };
     }
 }
-//# sourceMappingURL=MultiXYPlotRenderer.js.map

package/esm/MultiXYPlotRenderer/configSchema.js

@@ -45,4 +45,3 @@ const configSchema = ConfigurationSchema('MultiXYPlotRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/MultiXYPlotRenderer/index.js

@@ -9,4 +9,3 @@ export default (pluginManager) => {
         pluginManager,
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/QuantitativeTrack/configSchema.js

@@ -13,4 +13,3 @@ function configSchemaFactory(pluginManager) {
     });
 }
 export default configSchemaFactory;
-//# sourceMappingURL=configSchema.js.map

package/esm/QuantitativeTrack/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/esm/Tooltip.d.ts

@@ -15,6 +15,6 @@ declare function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, cl
     offsetMouseCoord: Coord;
     clientRect?: DOMRect;
     TooltipContents: TooltipContentsComponent;
-}): JSX.Element | null;
+}): React.JSX.Element | null;
 declare const _default: typeof Tooltip;
 export default _default;

package/esm/Tooltip.js

@@ -68,4 +68,3 @@ function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect
             } }))) : null;
 }
 export default observer(Tooltip);
-//# sourceMappingURL=Tooltip.js.map

package/esm/WiggleBaseRenderer.d.ts

@@ -38,7 +38,7 @@ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
         height: number;
         width: number;
         containsNoTransferables: boolean;
-        reactElement: JSX.Element;
+        reactElement: import("react").JSX.Element;
         html?: string | undefined;
     } | {
         features: Map<string, Feature>;

package/esm/WiggleBaseRenderer.js

@@ -34,4 +34,3 @@ export default class WiggleBaseRenderer extends FeatureRendererType {
         };
     }
 }
-//# sourceMappingURL=WiggleBaseRenderer.js.map

package/esm/WiggleRPC/MultiWiggleGetSources.js

@@ -41,4 +41,3 @@ export class MultiWiggleGetSources extends RpcMethodType {
         return dataAdapter.getSources(regions, deserializedArgs);
     }
 }
-//# sourceMappingURL=MultiWiggleGetSources.js.map

package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js

@@ -27,4 +27,3 @@ export class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
         return dataAdapter.getGlobalStats(deserializedArgs);
     }
 }
-//# sourceMappingURL=WiggleGetGlobalQuantitativeStats.js.map

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -44,4 +44,3 @@ export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
         throw new Error('Data adapter not found');
     }
 }
-//# sourceMappingURL=WiggleGetMultiRegionQuantitativeStats.js.map

package/esm/WiggleRPC/rpcMethods.js

@@ -1,4 +1,3 @@
 export * from './MultiWiggleGetSources';
 export * from './WiggleGetMultiRegionQuantitativeStats';
 export * from './WiggleGetGlobalQuantitativeStats';
-//# sourceMappingURL=rpcMethods.js.map

package/esm/WiggleRendering.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 declare function WiggleRendering(props: {
@@ -10,6 +11,6 @@ declare function WiggleRendering(props: {
     onMouseMove: Function;
     onFeatureClick: Function;
     blockKey: string;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof WiggleRendering;
 export default _default;

package/esm/WiggleRendering.js

@@ -33,4 +33,3 @@ function WiggleRendering(props) {
         React.createElement(PrerenderedCanvas, { ...props })));
 }
 export default observer(WiggleRendering);
-//# sourceMappingURL=WiggleRendering.js.map

package/esm/XYPlotRenderer/XYPlotRenderer.js

@@ -23,4 +23,3 @@ export default class XYPlotRenderer extends WiggleBaseRenderer {
         });
     }
 }
-//# sourceMappingURL=XYPlotRenderer.js.map

package/esm/XYPlotRenderer/configSchema.js

@@ -45,4 +45,3 @@ const configSchema = ConfigurationSchema('XYPlotRenderer', {
     explicitlyTyped: true,
 });
 export default configSchema;
-//# sourceMappingURL=configSchema.js.map

package/esm/XYPlotRenderer/index.js

@@ -12,4 +12,3 @@ export default (pluginManager) => {
 export { default as XYPlotRenderer } from './XYPlotRenderer';
 export { default as ReactComponent } from '../WiggleRendering';
 export { default as configSchema } from './configSchema';
-//# sourceMappingURL=index.js.map

package/esm/configSchema.js

@@ -62,4 +62,3 @@ const WiggleRenderer = ConfigurationSchema('WiggleRenderer', {
     },
 }, { explicitlyTyped: true });
 export default WiggleRenderer;
-//# sourceMappingURL=configSchema.js.map

package/esm/drawxy.js

@@ -281,4 +281,3 @@ export function drawDensity(ctx, props) {
     ctx.restore();
     return { reducedFeatures };
 }
-//# sourceMappingURL=drawxy.js.map