@jbrowse/plugin-wiggle 2.1.0 → 2.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +74 -200
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/dist/BigWigAdapter/configSchema.js +1 -1
- package/dist/BigWigAdapter/configSchema.js.map +1 -1
- package/dist/BigWigAdapter/index.js +14 -16
- package/dist/BigWigAdapter/index.js.map +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +12 -29
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +23 -57
- package/dist/CreateMultiWiggleExtension/index.js.map +1 -1
- package/dist/DensityRenderer/DensityRenderer.js +6 -66
- package/dist/DensityRenderer/DensityRenderer.js.map +1 -1
- package/dist/DensityRenderer/configSchema.js +3 -3
- package/dist/DensityRenderer/configSchema.js.map +1 -1
- package/dist/DensityRenderer/index.js +11 -13
- package/dist/DensityRenderer/index.js.map +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js +11 -78
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
- package/dist/LinePlotRenderer/configSchema.js +3 -3
- package/dist/LinePlotRenderer/configSchema.js.map +1 -1
- package/dist/LinePlotRenderer/index.js +11 -13
- package/dist/LinePlotRenderer/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +18 -35
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js +15 -26
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +15 -26
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +6 -18
- package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -1
- package/dist/LinearWiggleDisplay/index.js +12 -12
- package/dist/LinearWiggleDisplay/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js +6 -6
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/model.js +378 -451
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +32 -125
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
- package/dist/MultiDensityRenderer/configSchema.js +3 -3
- package/dist/MultiDensityRenderer/configSchema.js.map +1 -1
- package/dist/MultiDensityRenderer/index.js +11 -13
- package/dist/MultiDensityRenderer/index.js.map +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +21 -114
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
- package/dist/MultiLineRenderer/configSchema.js +4 -4
- package/dist/MultiLineRenderer/configSchema.js.map +1 -1
- package/dist/MultiLineRenderer/index.js +11 -13
- package/dist/MultiLineRenderer/index.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +72 -120
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +21 -50
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +53 -92
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +6 -18
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +16 -18
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +9 -9
- package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +8 -8
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/model.js +489 -566
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiQuantitativeTrack/index.js +8 -8
- package/dist/MultiQuantitativeTrack/index.js.map +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +29 -121
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
- package/dist/MultiRowLineRenderer/configSchema.js +4 -4
- package/dist/MultiRowLineRenderer/configSchema.js.map +1 -1
- package/dist/MultiRowLineRenderer/index.js +11 -13
- package/dist/MultiRowLineRenderer/index.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -131
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.js +4 -4
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/index.js +11 -13
- package/dist/MultiRowXYPlotRenderer/index.js.map +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +80 -232
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/dist/MultiWiggleAdapter/configSchema.js +1 -1
- package/dist/MultiWiggleAdapter/configSchema.js.map +1 -1
- package/dist/MultiWiggleAdapter/index.js +14 -18
- package/dist/MultiWiggleAdapter/index.js.map +1 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +30 -56
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
- package/dist/MultiWiggleAddTrackWidget/index.js +10 -12
- package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -1
- package/dist/MultiWiggleRendering.js +45 -109
- package/dist/MultiWiggleRendering.js.map +1 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +24 -120
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
- package/dist/MultiXYPlotRenderer/configSchema.js +4 -4
- package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -1
- package/dist/MultiXYPlotRenderer/index.js +11 -13
- package/dist/MultiXYPlotRenderer/index.js.map +1 -1
- package/dist/QuantitativeTrack/index.js +8 -8
- package/dist/QuantitativeTrack/index.js.map +1 -1
- package/dist/Tooltip.js +26 -54
- package/dist/Tooltip.js.map +1 -1
- package/dist/WiggleBaseRenderer.d.ts +6 -6
- package/dist/WiggleBaseRenderer.js +34 -125
- package/dist/WiggleBaseRenderer.js.map +1 -1
- package/dist/WiggleRPC/rpcMethods.d.ts +2 -2
- package/dist/WiggleRPC/rpcMethods.js +101 -244
- package/dist/WiggleRPC/rpcMethods.js.map +1 -1
- package/dist/WiggleRendering.js +20 -69
- package/dist/WiggleRendering.js.map +1 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +24 -121
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
- package/dist/XYPlotRenderer/configSchema.js +4 -4
- package/dist/XYPlotRenderer/configSchema.js.map +1 -1
- package/dist/XYPlotRenderer/index.js +11 -13
- package/dist/XYPlotRenderer/index.js.map +1 -1
- package/dist/configSchema.js +2 -2
- package/dist/configSchema.js.map +1 -1
- package/dist/drawxy.js +192 -311
- package/dist/drawxy.js.map +1 -1
- package/dist/index.js +44 -62
- package/dist/index.js.map +1 -1
- package/dist/util.js +105 -168
- package/dist/util.js.map +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +5 -3
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/esm/WiggleBaseRenderer.d.ts +6 -6
- package/esm/WiggleBaseRenderer.js +4 -3
- package/esm/WiggleBaseRenderer.js.map +1 -1
- package/esm/WiggleRPC/rpcMethods.d.ts +2 -2
- package/esm/WiggleRPC/rpcMethods.js.map +1 -1
- package/package.json +2 -3
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +7 -3
- package/src/WiggleBaseRenderer.tsx +4 -3
- package/src/WiggleRPC/rpcMethods.ts +8 -2
- package/src/declare.d.ts +0 -2
|
@@ -30,7 +30,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
30
30
|
const dataAdapter = (await getSubAdapter(conf))
|
|
31
31
|
.dataAdapter;
|
|
32
32
|
return {
|
|
33
|
-
source: dataAdapter.id,
|
|
33
|
+
source: conf.name || dataAdapter.id,
|
|
34
34
|
...conf,
|
|
35
35
|
dataAdapter,
|
|
36
36
|
};
|
|
@@ -39,7 +39,8 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
39
39
|
// note: can't really have dis-agreeing refNames
|
|
40
40
|
async getRefNames(opts) {
|
|
41
41
|
const adapters = await this.getAdapters();
|
|
42
|
-
|
|
42
|
+
const allNames = await Promise.all(adapters.map(a => a.dataAdapter.getRefNames(opts)));
|
|
43
|
+
return [...new Set(allNames.flat())];
|
|
43
44
|
}
|
|
44
45
|
async getGlobalStats(opts) {
|
|
45
46
|
const adapters = await this.getAdapters();
|
|
@@ -72,8 +73,9 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
72
73
|
// something, but it is static for this particular multi-wiggle adapter type
|
|
73
74
|
async getSources() {
|
|
74
75
|
const adapters = await this.getAdapters();
|
|
75
|
-
return adapters.map(({ dataAdapter, source, ...rest }) => ({
|
|
76
|
+
return adapters.map(({ dataAdapter, source, name, ...rest }) => ({
|
|
76
77
|
name: source,
|
|
78
|
+
__name: name,
|
|
77
79
|
...rest,
|
|
78
80
|
}));
|
|
79
81
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAW,MAAM,oBAAoB,CAAA;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AAC5B,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAA;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAOD,MAAM,CAAC,OAAO,OAAO,kBAAmB,SAAQ,sBAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,WAAW,CAAC,EAAE;
|
|
1
|
+
{"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAW,MAAM,oBAAoB,CAAA;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AAC5B,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAA;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAOD,MAAM,CAAC,OAAO,OAAO,kBAAmB,SAAQ,sBAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,IAAI,IAAI,WAAW,CAAC,EAAE;gBACnC,GAAG,IAAI;gBACP,WAAW;aACZ,CAAA;QACH,CAAC,CAAC,CACH,CAAA;IACH,CAAC;IAED,gDAAgD;IACzC,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAChC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CACnD,CAAA;QACD,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,KAAK,GAAG,CACZ,MAAM,OAAO,CAAC,GAAG;QACf,aAAa;QACb,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,eAAC,OAAA,MAAA,MAAA,GAAG,CAAC,WAAW,EAAC,cAAc,mDAAG,IAAI,CAAC,CAAA,EAAA,CAAC,CAC5D,CACF,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClB,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QACxD,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QACxD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,KAAK,CACH,GAAG,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CACpB,GAAG,CAAC,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,CAC5C,GAAG,CAAC,CAAC,CAAC,EAAE;YACN,wCAAwC;YACxC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACb,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,IAAI,aAAa,CAAC;oBAChB,GAAG,CAAC,CAAC,MAAM,EAAE;oBACb,QAAQ,EAAE,GAAG,CAAC,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,EAAE,EAAE;oBACnC,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC,CACP,CACF,CACF,CACF,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAED,wEAAwE;IACxE,4EAA4E;IAC5E,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;YAC/D,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,GAAG,IAAI;SACR,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,aAAa,KAAU,CAAC;;AAjGjB,+BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}
|
|
@@ -27,25 +27,25 @@ export type { RenderArgsSerialized, RenderResults, ResultsSerialized, ResultsDes
|
|
|
27
27
|
export default abstract class WiggleBaseRenderer extends FeatureRendererType {
|
|
28
28
|
supportsSVG: boolean;
|
|
29
29
|
render(renderProps: RenderArgsDeserialized): Promise<{
|
|
30
|
-
features:
|
|
31
|
-
containsNoTransferables: boolean;
|
|
30
|
+
features: Map<string, Feature>;
|
|
32
31
|
height: number;
|
|
33
32
|
width: number;
|
|
33
|
+
containsNoTransferables: boolean;
|
|
34
34
|
canvasRecordedData: any;
|
|
35
35
|
reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
36
36
|
html?: string | undefined;
|
|
37
37
|
} | {
|
|
38
|
-
features:
|
|
39
|
-
containsNoTransferables: boolean;
|
|
38
|
+
features: Map<string, Feature>;
|
|
40
39
|
height: number;
|
|
41
40
|
width: number;
|
|
41
|
+
containsNoTransferables: boolean;
|
|
42
42
|
reactElement: JSX.Element;
|
|
43
43
|
html?: string | undefined;
|
|
44
44
|
} | {
|
|
45
|
-
features:
|
|
46
|
-
containsNoTransferables: boolean;
|
|
45
|
+
features: Map<string, Feature>;
|
|
47
46
|
height: number;
|
|
48
47
|
width: number;
|
|
48
|
+
containsNoTransferables: boolean;
|
|
49
49
|
imageData: any;
|
|
50
50
|
reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
51
51
|
html?: string | undefined;
|
|
@@ -25,11 +25,12 @@ export default class WiggleBaseRenderer extends FeatureRendererType {
|
|
|
25
25
|
return {
|
|
26
26
|
...results,
|
|
27
27
|
...rest,
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
28
|
+
features: (reducedFeatures
|
|
29
|
+
? new Map(reducedFeatures.map((r) => [r.id(), r]))
|
|
30
|
+
: results.features),
|
|
31
31
|
height,
|
|
32
32
|
width,
|
|
33
|
+
containsNoTransferables: true,
|
|
33
34
|
};
|
|
34
35
|
}
|
|
35
36
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":"AAAA,OAAO,mBAON,MAAM,mEAAmE,CAAA;AAC1E,OAAO,EAAE,sBAAsB,EAAW,MAAM,oBAAoB,CAAA;AAmCpE,MAAM,CAAC,OAAO,OAAgB,kBAAmB,SAAQ,mBAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;
|
|
1
|
+
{"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":"AAAA,OAAO,mBAON,MAAM,mEAAmE,CAAA;AAC1E,OAAO,EAAE,sBAAsB,EAAW,MAAM,oBAAoB,CAAA;AAmCpE,MAAM,CAAC,OAAO,OAAgB,kBAAmB,SAAQ,mBAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;IAgDpB,CAAC;IA9CC,KAAK,CAAC,MAAM,CAAC,WAAmC;QAC9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;QACpD,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;QAChD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,aAAa;QACb,MAAM,EAAE,eAAe,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,sBAAsB,CAC/D,KAAK,EACL,MAAM,EACN,WAAW,EACX,GAAG,CAAC,EAAE,CACJ,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE;YACb,GAAG,WAAW;YACd,QAAQ;SACT,CAAC,CACL,CAAA;QAED,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC;YACjC,GAAG,WAAW;YACd,GAAG,IAAI;YACP,QAAQ;YACR,MAAM;YACN,KAAK;SACN,CAAC,CAAA;QAEF,OAAO;YACL,GAAG,OAAO;YACV,GAAG,IAAI;YACP,QAAQ,EAAE,CAAC,eAAe;gBACxB,CAAC,CAAC,IAAI,GAAG,CAAC,eAAe,CAAC,GAAG,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;gBAC3D,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAyB;YAC7C,MAAM;YACN,KAAK;YACL,uBAAuB,EAAE,IAAI;SAC9B,CAAA;IACH,CAAC;CAUF"}
|
|
@@ -18,7 +18,7 @@ export declare class WiggleGetMultiRegionStats extends RpcMethodType {
|
|
|
18
18
|
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
19
19
|
serializeArguments(args: RenderArgs & {
|
|
20
20
|
signal?: AbortSignal;
|
|
21
|
-
statusCallback?:
|
|
21
|
+
statusCallback?: (arg: string) => void;
|
|
22
22
|
}, rpcDriverClassName: string): Promise<{}>;
|
|
23
23
|
execute(args: {
|
|
24
24
|
adapterConfig: {};
|
|
@@ -34,7 +34,7 @@ export declare class MultiWiggleGetSources extends RpcMethodType {
|
|
|
34
34
|
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
35
35
|
serializeArguments(args: RenderArgs & {
|
|
36
36
|
signal?: AbortSignal;
|
|
37
|
-
statusCallback?:
|
|
37
|
+
statusCallback?: (arg: string) => void;
|
|
38
38
|
}, rpcDriverClassName: string): Promise<{}>;
|
|
39
39
|
execute(args: {
|
|
40
40
|
adapterConfig: {};
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"rpcMethods.js","sourceRoot":"","sources":["../../src/WiggleRPC/rpcMethods.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAE,qBAAqB,EAAU,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAGhF,MAAM,OAAO,oBAAqB,SAAQ,aAAa;IAAvD;;QACE,SAAI,GAAG,sBAAsB,CAAA;IAmC/B,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF;AAED,MAAM,OAAO,yBAA0B,SAAQ,aAAa;IAA5D;;QACE,SAAI,GAAG,2BAA2B,CAAA;
|
|
1
|
+
{"version":3,"file":"rpcMethods.js","sourceRoot":"","sources":["../../src/WiggleRPC/rpcMethods.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAE,qBAAqB,EAAU,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAGhF,MAAM,OAAO,oBAAqB,SAAQ,aAAa;IAAvD;;QACE,SAAI,GAAG,sBAAsB,CAAA;IAmC/B,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF;AAED,MAAM,OAAO,yBAA0B,SAAQ,aAAa;IAA5D;;QACE,SAAI,GAAG,2BAA2B,CAAA;IA4DpC,CAAC;IA1DC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,IAAI,WAAW,YAAY,sBAAsB,EAAE;YACjD,OAAO,WAAW,CAAC,mBAAmB,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;SAClE;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;CACF;AAED,MAAM,OAAO,qBAAsB,SAAQ,aAAa;IAAxD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IA0DhC,CAAC;IAxDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-wiggle",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.3",
|
|
4
4
|
"description": "JBrowse 2 wiggle adapters, tracks, etc.",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -37,7 +37,6 @@
|
|
|
37
37
|
"clean": "rimraf dist esm *.tsbuildinfo"
|
|
38
38
|
},
|
|
39
39
|
"dependencies": {
|
|
40
|
-
"@babel/runtime": "^7.17.9",
|
|
41
40
|
"@gmod/bbi": "^2.0.2",
|
|
42
41
|
"@mui/icons-material": "^5.0.2",
|
|
43
42
|
"@popperjs/core": "^2.11.0",
|
|
@@ -71,5 +70,5 @@
|
|
|
71
70
|
"distModule": "esm/index.js",
|
|
72
71
|
"srcModule": "src/index.ts",
|
|
73
72
|
"module": "esm/index.js",
|
|
74
|
-
"gitHead": "
|
|
73
|
+
"gitHead": "ebd548ceb52adb36cf6ab437082b5b5feac1338e"
|
|
75
74
|
}
|
|
@@ -52,7 +52,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
52
52
|
const dataAdapter = (await getSubAdapter(conf))
|
|
53
53
|
.dataAdapter as BaseFeatureDataAdapter
|
|
54
54
|
return {
|
|
55
|
-
source: dataAdapter.id,
|
|
55
|
+
source: conf.name || dataAdapter.id,
|
|
56
56
|
...conf,
|
|
57
57
|
dataAdapter,
|
|
58
58
|
}
|
|
@@ -63,7 +63,10 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
63
63
|
// note: can't really have dis-agreeing refNames
|
|
64
64
|
public async getRefNames(opts?: BaseOptions) {
|
|
65
65
|
const adapters = await this.getAdapters()
|
|
66
|
-
|
|
66
|
+
const allNames = await Promise.all(
|
|
67
|
+
adapters.map(a => a.dataAdapter.getRefNames(opts)),
|
|
68
|
+
)
|
|
69
|
+
return [...new Set(allNames.flat())]
|
|
67
70
|
}
|
|
68
71
|
|
|
69
72
|
public async getGlobalStats(opts?: BaseOptions) {
|
|
@@ -110,8 +113,9 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
110
113
|
// something, but it is static for this particular multi-wiggle adapter type
|
|
111
114
|
async getSources() {
|
|
112
115
|
const adapters = await this.getAdapters()
|
|
113
|
-
return adapters.map(({ dataAdapter, source, ...rest }) => ({
|
|
116
|
+
return adapters.map(({ dataAdapter, source, name, ...rest }) => ({
|
|
114
117
|
name: source,
|
|
118
|
+
__name: name,
|
|
115
119
|
...rest,
|
|
116
120
|
}))
|
|
117
121
|
}
|
|
@@ -73,11 +73,12 @@ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
|
|
|
73
73
|
return {
|
|
74
74
|
...results,
|
|
75
75
|
...rest,
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
|
|
76
|
+
features: (reducedFeatures
|
|
77
|
+
? new Map(reducedFeatures.map((r: Feature) => [r.id(), r]))
|
|
78
|
+
: results.features) as Map<string, Feature>,
|
|
79
79
|
height,
|
|
80
80
|
width,
|
|
81
|
+
containsNoTransferables: true,
|
|
81
82
|
}
|
|
82
83
|
}
|
|
83
84
|
|
|
@@ -62,7 +62,10 @@ export class WiggleGetMultiRegionStats extends RpcMethodType {
|
|
|
62
62
|
}
|
|
63
63
|
|
|
64
64
|
async serializeArguments(
|
|
65
|
-
args: RenderArgs & {
|
|
65
|
+
args: RenderArgs & {
|
|
66
|
+
signal?: AbortSignal
|
|
67
|
+
statusCallback?: (arg: string) => void
|
|
68
|
+
},
|
|
66
69
|
rpcDriverClassName: string,
|
|
67
70
|
) {
|
|
68
71
|
const pm = this.pluginManager
|
|
@@ -122,7 +125,10 @@ export class MultiWiggleGetSources extends RpcMethodType {
|
|
|
122
125
|
}
|
|
123
126
|
|
|
124
127
|
async serializeArguments(
|
|
125
|
-
args: RenderArgs & {
|
|
128
|
+
args: RenderArgs & {
|
|
129
|
+
signal?: AbortSignal
|
|
130
|
+
statusCallback?: (arg: string) => void
|
|
131
|
+
},
|
|
126
132
|
rpcDriverClassName: string,
|
|
127
133
|
) {
|
|
128
134
|
const pm = this.pluginManager
|
package/src/declare.d.ts
DELETED