@jbrowse/plugin-wiggle 2.1.0 → 2.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +74 -200
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/dist/BigWigAdapter/configSchema.js +1 -1
- package/dist/BigWigAdapter/configSchema.js.map +1 -1
- package/dist/BigWigAdapter/index.js +14 -16
- package/dist/BigWigAdapter/index.js.map +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +12 -29
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +23 -57
- package/dist/CreateMultiWiggleExtension/index.js.map +1 -1
- package/dist/DensityRenderer/DensityRenderer.js +6 -66
- package/dist/DensityRenderer/DensityRenderer.js.map +1 -1
- package/dist/DensityRenderer/configSchema.js +3 -3
- package/dist/DensityRenderer/configSchema.js.map +1 -1
- package/dist/DensityRenderer/index.js +11 -13
- package/dist/DensityRenderer/index.js.map +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.js +11 -78
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
- package/dist/LinePlotRenderer/configSchema.js +3 -3
- package/dist/LinePlotRenderer/configSchema.js.map +1 -1
- package/dist/LinePlotRenderer/index.js +11 -13
- package/dist/LinePlotRenderer/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +18 -35
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.js +15 -26
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +15 -26
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +6 -18
- package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -1
- package/dist/LinearWiggleDisplay/index.js +12 -12
- package/dist/LinearWiggleDisplay/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js +6 -6
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/model.js +378 -451
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +32 -125
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
- package/dist/MultiDensityRenderer/configSchema.js +3 -3
- package/dist/MultiDensityRenderer/configSchema.js.map +1 -1
- package/dist/MultiDensityRenderer/index.js +11 -13
- package/dist/MultiDensityRenderer/index.js.map +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +21 -114
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
- package/dist/MultiLineRenderer/configSchema.js +4 -4
- package/dist/MultiLineRenderer/configSchema.js.map +1 -1
- package/dist/MultiLineRenderer/index.js +11 -13
- package/dist/MultiLineRenderer/index.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +72 -120
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +21 -50
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +53 -92
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +6 -18
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +16 -18
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +9 -9
- package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +8 -8
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/model.js +489 -566
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiQuantitativeTrack/index.js +8 -8
- package/dist/MultiQuantitativeTrack/index.js.map +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +29 -121
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
- package/dist/MultiRowLineRenderer/configSchema.js +4 -4
- package/dist/MultiRowLineRenderer/configSchema.js.map +1 -1
- package/dist/MultiRowLineRenderer/index.js +11 -13
- package/dist/MultiRowLineRenderer/index.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -131
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.js +4 -4
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/index.js +11 -13
- package/dist/MultiRowXYPlotRenderer/index.js.map +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +80 -232
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/dist/MultiWiggleAdapter/configSchema.js +1 -1
- package/dist/MultiWiggleAdapter/configSchema.js.map +1 -1
- package/dist/MultiWiggleAdapter/index.js +14 -18
- package/dist/MultiWiggleAdapter/index.js.map +1 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +30 -56
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
- package/dist/MultiWiggleAddTrackWidget/index.js +10 -12
- package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -1
- package/dist/MultiWiggleRendering.js +45 -109
- package/dist/MultiWiggleRendering.js.map +1 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +24 -120
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
- package/dist/MultiXYPlotRenderer/configSchema.js +4 -4
- package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -1
- package/dist/MultiXYPlotRenderer/index.js +11 -13
- package/dist/MultiXYPlotRenderer/index.js.map +1 -1
- package/dist/QuantitativeTrack/index.js +8 -8
- package/dist/QuantitativeTrack/index.js.map +1 -1
- package/dist/Tooltip.js +26 -54
- package/dist/Tooltip.js.map +1 -1
- package/dist/WiggleBaseRenderer.d.ts +6 -6
- package/dist/WiggleBaseRenderer.js +34 -125
- package/dist/WiggleBaseRenderer.js.map +1 -1
- package/dist/WiggleRPC/rpcMethods.d.ts +2 -2
- package/dist/WiggleRPC/rpcMethods.js +101 -244
- package/dist/WiggleRPC/rpcMethods.js.map +1 -1
- package/dist/WiggleRendering.js +20 -69
- package/dist/WiggleRendering.js.map +1 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +24 -121
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
- package/dist/XYPlotRenderer/configSchema.js +4 -4
- package/dist/XYPlotRenderer/configSchema.js.map +1 -1
- package/dist/XYPlotRenderer/index.js +11 -13
- package/dist/XYPlotRenderer/index.js.map +1 -1
- package/dist/configSchema.js +2 -2
- package/dist/configSchema.js.map +1 -1
- package/dist/drawxy.js +192 -311
- package/dist/drawxy.js.map +1 -1
- package/dist/index.js +44 -62
- package/dist/index.js.map +1 -1
- package/dist/util.js +105 -168
- package/dist/util.js.map +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +5 -3
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/esm/WiggleBaseRenderer.d.ts +6 -6
- package/esm/WiggleBaseRenderer.js +4 -3
- package/esm/WiggleBaseRenderer.js.map +1 -1
- package/esm/WiggleRPC/rpcMethods.d.ts +2 -2
- package/esm/WiggleRPC/rpcMethods.js.map +1 -1
- package/package.json +2 -3
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +7 -3
- package/src/WiggleBaseRenderer.tsx +4 -3
- package/src/WiggleRPC/rpcMethods.ts +8 -2
- package/src/declare.d.ts +0 -2
package/dist/WiggleRendering.js
CHANGED
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const mobx_react_1 = require("mobx-react");
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const react_1 = __importStar(require("react"));
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const ui_1 = require("@jbrowse/core/ui");
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function WiggleRendering(props) {
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exports.default = (0, mobx_react_1.observer)(WiggleRendering);
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{"version":3,"file":"WiggleRendering.js","sourceRoot":"","sources":["../src/WiggleRendering.tsx"],"names":[],"mappings":"
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|
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|
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|
|
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|
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|
|
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|
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class XYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
34
|
+
async draw(ctx, props) {
|
|
35
|
+
const { features, config } = props;
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
+
const pivotValue = (0, configuration_1.readConfObject)(config, 'bicolorPivotValue');
|
|
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|
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const negColor = (0, configuration_1.readConfObject)(config, 'negColor');
|
|
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|
+
const posColor = (0, configuration_1.readConfObject)(config, 'posColor');
|
|
42
|
+
const Color = await Promise.resolve().then(() => __importStar(require('color'))).then(f => f.default);
|
|
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|
+
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|
|
44
|
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...props,
|
|
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|
+
colorCallback: (0, configuration_1.readConfObject)(config, 'color') === '#f0f'
|
|
46
|
+
? (_, score) => score < pivotValue ? negColor : posColor
|
|
47
|
+
: (feature, _score) => (0, configuration_1.readConfObject)(config, 'color', { feature }),
|
|
48
|
+
offset: util_1.YSCALEBAR_LABEL_OFFSET,
|
|
49
|
+
features: [...features.values()],
|
|
50
|
+
Color,
|
|
147
51
|
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|
|
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|
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}
|
|
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|
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|
|
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|
-
}(WiggleBaseRenderer_1.default));
|
|
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|
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}
|
|
53
|
+
}
|
|
151
54
|
exports.default = XYPlotRenderer;
|
|
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|
//# sourceMappingURL=XYPlotRenderer.js.map
|
|
@@ -1 +1 @@
|
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|
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{"version":3,"file":"XYPlotRenderer.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/XYPlotRenderer.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"XYPlotRenderer.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/XYPlotRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+DAA4D;AAE5D,sCAAkC;AAClC,+EAE8B;AAC9B,kCAAgD;AAEhD,MAAqB,cAAe,SAAQ,4BAAkB;IAC5D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;QAElC,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,UAAU,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;QAC9D,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,kDAAO,OAAO,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QAExD,OAAO,IAAA,eAAM,EAAC,GAAG,EAAE;YACjB,GAAG,KAAK;YACR,aAAa,EACX,IAAA,8BAAc,EAAC,MAAM,EAAE,OAAO,CAAC,KAAK,MAAM;gBACxC,CAAC,CAAC,CAAC,CAAU,EAAE,KAAa,EAAE,EAAE,CAC5B,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ;gBAC5C,CAAC,CAAC,CAAC,OAAgB,EAAE,MAAc,EAAE,EAAE,CACnC,IAAA,8BAAc,EAAC,MAAM,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,CAAC;YACpD,MAAM,EAAE,6BAAsB;YAC9B,QAAQ,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC;YAChC,KAAK;SACN,CAAC,CAAA;IACJ,CAAC;CACF;AA5BD,iCA4BC"}
|
|
@@ -3,10 +3,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
6
|
+
const configuration_1 = require("@jbrowse/core/configuration");
|
|
7
|
+
const configSchema_1 = __importDefault(require("../configSchema"));
|
|
8
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
9
|
+
const configSchema = (0, configuration_1.ConfigurationSchema)('XYPlotRenderer', {
|
|
10
10
|
filled: {
|
|
11
11
|
type: 'boolean',
|
|
12
12
|
defaultValue: true,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,+DAAiE;AACjE,mEAA0C;AAC1C,qDAAuC;AAEvC,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,gBAAgB,EAChB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,UAAU;KACzB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}
|
|
@@ -4,20 +4,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.ReactComponent = exports.configSchema = exports.XYPlotRenderer = void 0;
|
|
7
|
-
|
|
7
|
+
const WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
|
|
8
8
|
exports.ReactComponent = WiggleRendering_1.default;
|
|
9
|
-
|
|
9
|
+
const XYPlotRenderer_1 = __importDefault(require("./XYPlotRenderer"));
|
|
10
10
|
exports.XYPlotRenderer = XYPlotRenderer_1.default;
|
|
11
|
-
|
|
11
|
+
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
12
12
|
exports.configSchema = configSchema_1.default;
|
|
13
|
-
exports.default = (
|
|
14
|
-
pluginManager.addRendererType(
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
});
|
|
22
|
-
});
|
|
13
|
+
exports.default = (pluginManager) => {
|
|
14
|
+
pluginManager.addRendererType(() => new XYPlotRenderer_1.default({
|
|
15
|
+
name: 'XYPlotRenderer',
|
|
16
|
+
ReactComponent: WiggleRendering_1.default,
|
|
17
|
+
configSchema: configSchema_1.default,
|
|
18
|
+
pluginManager,
|
|
19
|
+
}));
|
|
20
|
+
};
|
|
23
21
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/index.ts"],"names":[],"mappings":";;;;;;AAAA,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/index.ts"],"names":[],"mappings":";;;;;;AAAA,yEAA+C;AAIR,yBAJhC,yBAAc,CAIgC;AAFrD,sEAA6C;AAEpC,yBAFF,wBAAc,CAEE;AADvB,kEAAyC;AAChB,uBADlB,sBAAY,CACkB;AAErC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,wBAAc,CAAC;QACjB,IAAI,EAAE,gBAAgB;QACtB,cAAc,EAAd,yBAAc;QACd,YAAY,EAAZ,sBAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
|
package/dist/configSchema.js
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
|
|
4
|
-
|
|
3
|
+
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
5
5
|
exports.default = (0, configuration_1.ConfigurationSchema)('WiggleRenderer', {
|
|
6
6
|
color: {
|
|
7
7
|
type: 'color',
|
package/dist/configSchema.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../src/configSchema.ts"],"names":[],"mappings":";;AAAA
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../src/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,qDAAuC;AAEvC,kBAAe,IAAA,mCAAmB,EAChC,gBAAgB,EAChB;IACE,KAAK,EAAE;QACL,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,qDAAqD;QAClE,YAAY,EAAE,MAAM;KACrB;IACD,QAAQ,EAAE;QACR,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,6CAA6C;QAC1D,YAAY,EAAE,MAAM;KACrB;IACD,QAAQ,EAAE;QACR,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,6CAA6C;QAC1D,YAAY,EAAE,KAAK;KACpB;IACD,SAAS,EAAE;QACT,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,kCAAkC;QAC/C,YAAY,EAAE,KAAK;KACpB;IACD,YAAY,EAAE;QACZ,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE;YACrC,SAAS;YACT,MAAM;YACN,SAAS;YACT,MAAM;SACP,CAAC;QACF,WAAW,EAAE,uBAAuB;QACpC,YAAY,EAAE,SAAS;KACxB;IACD,iBAAiB,EAAE;QACjB,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;QACf,WAAW,EAAE,gCAAgC;KAC9C;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
|