@jbrowse/plugin-wiggle 2.1.0 → 2.1.3

package/dist/drawxy.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -1,19 +1,4 @@
 "use strict";
-var __extends = (this && this.__extends) || (function () {
-    var extendStatics = function (d, b) {
-        extendStatics = Object.setPrototypeOf ||
-            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
-            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
-        return extendStatics(d, b);
-    };
-    return function (d, b) {
-        if (typeof b !== "function" && b !== null)
-            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
-        extendStatics(d, b);
-        function __() { this.constructor = d; }
-        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
-    };
-})();
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -45,53 +30,51 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.linearWiggleDisplayModelFactory = exports.WiggleBaseRenderer = exports.WiggleRendering = exports.Tooltip = exports.LinearWiggleDisplayReactComponent = void 0;
-var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
-var tracks_1 = require("@jbrowse/core/util/tracks");
+const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+const tracks_1 = require("@jbrowse/core/util/tracks");
 // locals
-var WiggleBaseRenderer_1 = __importDefault(require("./WiggleBaseRenderer"));
+const WiggleBaseRenderer_1 = __importDefault(require("./WiggleBaseRenderer"));
 exports.WiggleBaseRenderer = WiggleBaseRenderer_1.default;
-var WiggleRendering_1 = __importDefault(require("./WiggleRendering"));
+const WiggleRendering_1 = __importDefault(require("./WiggleRendering"));
 exports.WiggleRendering = WiggleRendering_1.default;
-var BigWigAdapter_1 = __importDefault(require("./BigWigAdapter"));
-var QuantitativeTrack_1 = __importDefault(require("./QuantitativeTrack"));
-var MultiQuantitativeTrack_1 = __importDefault(require("./MultiQuantitativeTrack"));
-var MultiWiggleAdapter_1 = __importDefault(require("./MultiWiggleAdapter"));
-var DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
-var XYPlotRenderer_1 = __importDefault(require("./XYPlotRenderer"));
-var LinePlotRenderer_1 = __importDefault(require("./LinePlotRenderer"));
-var LinearWiggleDisplay_1 = __importDefault(require("./LinearWiggleDisplay"));
-var MultiLinearWiggleDisplay_1 = __importDefault(require("./MultiLinearWiggleDisplay"));
-var MultiXYPlotRenderer_1 = __importDefault(require("./MultiXYPlotRenderer"));
-var MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
-var MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
-var MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
-var MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
-var CreateMultiWiggleExtension_1 = __importDefault(require("./CreateMultiWiggleExtension"));
-var MultiWiggleAddTrackWidget_1 = __importDefault(require("./MultiWiggleAddTrackWidget"));
-var utils = __importStar(require("./util"));
-var rpcMethods_1 = require("./WiggleRPC/rpcMethods");
-var LinearWiggleDisplay_2 = require("./LinearWiggleDisplay");
+const BigWigAdapter_1 = __importDefault(require("./BigWigAdapter"));
+const QuantitativeTrack_1 = __importDefault(require("./QuantitativeTrack"));
+const MultiQuantitativeTrack_1 = __importDefault(require("./MultiQuantitativeTrack"));
+const MultiWiggleAdapter_1 = __importDefault(require("./MultiWiggleAdapter"));
+const DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
+const XYPlotRenderer_1 = __importDefault(require("./XYPlotRenderer"));
+const LinePlotRenderer_1 = __importDefault(require("./LinePlotRenderer"));
+const LinearWiggleDisplay_1 = __importDefault(require("./LinearWiggleDisplay"));
+const MultiLinearWiggleDisplay_1 = __importDefault(require("./MultiLinearWiggleDisplay"));
+const MultiXYPlotRenderer_1 = __importDefault(require("./MultiXYPlotRenderer"));
+const MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
+const MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
+const MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
+const MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
+const CreateMultiWiggleExtension_1 = __importDefault(require("./CreateMultiWiggleExtension"));
+const MultiWiggleAddTrackWidget_1 = __importDefault(require("./MultiWiggleAddTrackWidget"));
+const utils = __importStar(require("./util"));
+const rpcMethods_1 = require("./WiggleRPC/rpcMethods");
+const LinearWiggleDisplay_2 = require("./LinearWiggleDisplay");
 Object.defineProperty(exports, "LinearWiggleDisplayReactComponent", { enumerable: true, get: function () { return LinearWiggleDisplay_2.ReactComponent; } });
 Object.defineProperty(exports, "linearWiggleDisplayModelFactory", { enumerable: true, get: function () { return LinearWiggleDisplay_2.modelFactory; } });
 Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return LinearWiggleDisplay_2.Tooltip; } });
-var XYPlotRenderer_2 = require("./XYPlotRenderer");
-var WigglePlugin = /** @class */ (function (_super) {
-    __extends(WigglePlugin, _super);
-    function WigglePlugin() {
-        var _this = _super !== null && _super.apply(this, arguments) || this;
-        _this.name = 'WigglePlugin';
-        _this.exports = {
+const XYPlotRenderer_2 = require("./XYPlotRenderer");
+class WigglePlugin extends Plugin_1.default {
+    constructor() {
+        super(...arguments);
+        this.name = 'WigglePlugin';
+        this.exports = {
             LinearWiggleDisplayReactComponent: LinearWiggleDisplay_2.ReactComponent,
             XYPlotRendererReactComponent: XYPlotRenderer_2.ReactComponent,
             XYPlotRenderer: XYPlotRenderer_2.XYPlotRenderer,
             WiggleBaseRenderer: WiggleBaseRenderer_1.default,
             xyPlotRendererConfigSchema: XYPlotRenderer_2.configSchema,
-            utils: utils,
+            utils,
             linearWiggleDisplayModelFactory: LinearWiggleDisplay_2.modelFactory,
         };
-        return _this;
     }
-    WigglePlugin.prototype.install = function (pm) {
+    install(pm) {
         (0, MultiWiggleAdapter_1.default)(pm);
         (0, BigWigAdapter_1.default)(pm);
         (0, QuantitativeTrack_1.default)(pm);
@@ -108,12 +91,12 @@ var WigglePlugin = /** @class */ (function (_super) {
         (0, MultiRowLineRenderer_1.default)(pm);
         (0, MultiWiggleAddTrackWidget_1.default)(pm);
         (0, CreateMultiWiggleExtension_1.default)(pm);
-        pm.addToExtensionPoint('Core-guessAdapterForLocation', function (cb) {
-            return function (file, index, hint) {
-                var regexGuess = /\.(bw|bigwig)$/i;
-                var adapterName = 'BigWigAdapter';
-                var fileName = (0, tracks_1.getFileName)(file);
-                var obj = {
+        pm.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
+            return (file, index, hint) => {
+                const regexGuess = /\.(bw|bigwig)$/i;
+                const adapterName = 'BigWigAdapter';
+                const fileName = (0, tracks_1.getFileName)(file);
+                const obj = {
                     type: adapterName,
                     bigWigLocation: file,
                 };
@@ -126,20 +109,19 @@ var WigglePlugin = /** @class */ (function (_super) {
                 return cb(file, index, hint);
             };
         });
-        pm.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
-            return function (adapterName) {
+        pm.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
+            return (adapterName) => {
                 if (adapterName === 'BigWigAdapter') {
                     return 'QuantitativeTrack';
                 }
                 return trackTypeGuesser(adapterName);
             };
         });
-        pm.addRpcMethod(function () { return new rpcMethods_1.WiggleGetGlobalStats(pm); });
-        pm.addRpcMethod(function () { return new rpcMethods_1.WiggleGetMultiRegionStats(pm); });
-        pm.addRpcMethod(function () { return new rpcMethods_1.MultiWiggleGetSources(pm); });
-    };
-    return WigglePlugin;
-}(Plugin_1.default));
+        pm.addRpcMethod(() => new rpcMethods_1.WiggleGetGlobalStats(pm));
+        pm.addRpcMethod(() => new rpcMethods_1.WiggleGetMultiRegionStats(pm));
+        pm.addRpcMethod(() => new rpcMethods_1.MultiWiggleGetSources(pm));
+    }
+}
 exports.default = WigglePlugin;
 __exportStar(require("./util"), exports);
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAGzC,sDAIkC;AAElC,SAAS;AACT,8EAAqD;AAqHnD,6BArHK,4BAAkB,CAqHL;AApHpB,wEAA+C;AAmH7C,0BAnHK,yBAAe,CAmHL;AAlHjB,oEAA4C;AAC5C,4EAAoD;AACpD,sFAA8D;AAC9D,8EAAsD;AACtD,wEAAgD;AAChD,sEAA8C;AAC9C,0EAAkD;AAClD,gFAAwD;AACxD,0FAAkE;AAClE,gFAAwD;AACxD,sFAA8D;AAC9D,kFAA0D;AAC1D,4EAAoD;AACpD,kFAA0D;AAC1D,8FAAsE;AACtE,4FAAoE;AAEpE,8CAA+B;AAE/B,uDAI+B;AAE/B,+DAI8B;AAmF5B,kHAtFkB,oCAAiC,OAsFlB;AAIjC,gHAzFgB,kCAA+B,OAyFhB;AAH/B,wFArFA,6BAAO,OAqFA;AAlFT,qDAIyB;AAEzB,MAAqB,YAAa,SAAQ,gBAAM;IAAhD;;QACE,SAAI,GAAG,cAAc,CAAA;QA2DrB,YAAO,GAAG;YACR,iCAAiC,EAAjC,oCAAiC;YACjC,4BAA4B,EAA5B,+BAA4B;YAC5B,cAAc,EAAd,+BAAc;YACd,kBAAkB,EAAlB,4BAAkB;YAElB,0BAA0B,EAA1B,6BAA0B;YAC1B,KAAK;YACL,+BAA+B,EAA/B,kCAA+B;SAChC,CAAA;IACH,CAAC;IAnEC,OAAO,CAAC,EAAiB;QACvB,IAAA,4BAAmB,EAAC,EAAE,CAAC,CAAA;QACvB,IAAA,uBAAc,EAAC,EAAE,CAAC,CAAA;QAClB,IAAA,2BAAkB,EAAC,EAAE,CAAC,CAAA;QACtB,IAAA,gCAAuB,EAAC,EAAE,CAAC,CAAA;QAC3B,IAAA,6BAAoB,EAAC,EAAE,CAAC,CAAA;QACxB,IAAA,kCAAyB,EAAC,EAAE,CAAC,CAAA;QAC7B,IAAA,0BAAiB,EAAC,EAAE,CAAC,CAAA;QACrB,IAAA,wBAAe,EAAC,EAAE,CAAC,CAAA;QACnB,IAAA,yBAAgB,EAAC,EAAE,CAAC,CAAA;QACpB,IAAA,6BAAoB,EAAC,EAAE,CAAC,CAAA;QACxB,IAAA,gCAAuB,EAAC,EAAE,CAAC,CAAA;QAC3B,IAAA,8BAAqB,EAAC,EAAE,CAAC,CAAA;QACzB,IAAA,2BAAkB,EAAC,EAAE,CAAC,CAAA;QACtB,IAAA,8BAAqB,EAAC,EAAE,CAAC,CAAA;QACzB,IAAA,mCAA0B,EAAC,EAAE,CAAC,CAAA;QAC9B,IAAA,oCAA2B,EAAC,EAAE,CAAC,CAAA;QAE/B,EAAE,CAAC,mBAAmB,CACpB,8BAA8B,EAC9B,CAAC,EAAkB,EAAE,EAAE;YACrB,OAAO,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAa,EAAE,EAAE;gBACjE,MAAM,UAAU,GAAG,iBAAiB,CAAA;gBACpC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,cAAc,EAAE,IAAI;iBACrB,CAAA;gBAED,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,IAAI,KAAK,WAAW,EAAE;oBAC/B,OAAO,GAAG,CAAA;iBACX;gBAED,OAAO,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;YAC9B,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,EAAE,CAAC,mBAAmB,CACpB,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,eAAe,EAAE;oBACnC,OAAO,mBAAmB,CAAA;iBAC3B;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,iCAAoB,CAAC,EAAE,CAAC,CAAC,CAAA;QACnD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,sCAAyB,CAAC,EAAE,CAAC,CAAC,CAAA;QACxD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,kCAAqB,CAAC,EAAE,CAAC,CAAC,CAAA;IACtD,CAAC;CAYF;AAtED,+BAsEC;AAED,yCAAsB"}

package/dist/util.js

@@ -1,75 +1,12 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.round = exports.toP = exports.statsAutorun = exports.getStats = exports.groupBy = exports.getNiceDomain = exports.getOrigin = exports.getScale = exports.YSCALEBAR_LABEL_OFFSET = void 0;
-var d3_scale_1 = require("d3-scale");
-var mobx_1 = require("mobx");
-var util_1 = require("@jbrowse/core/util");
-var tracks_1 = require("@jbrowse/core/util/tracks");
-var mobx_state_tree_1 = require("mobx-state-tree");
-var configuration_1 = require("@jbrowse/core/configuration");
+const d3_scale_1 = require("d3-scale");
+const mobx_1 = require("mobx");
+const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const configuration_1 = require("@jbrowse/core/configuration");
 exports.YSCALEBAR_LABEL_OFFSET = 5;
 /**
  * produces a d3-scale from arguments. applies a "nice domain" adjustment
@@ -82,10 +19,9 @@ exports.YSCALEBAR_LABEL_OFFSET = 5;
  *   - pivotValue (number)
  *   - inverted (boolean)
  */
-function getScale(_a) {
-    var _b = _a.domain, domain = _b === void 0 ? [] : _b, _c = _a.range, range = _c === void 0 ? [] : _c, scaleType = _a.scaleType, pivotValue = _a.pivotValue, inverted = _a.inverted;
-    var scale;
-    var _d = __read(domain, 2), min = _d[0], max = _d[1];
+function getScale({ domain = [], range = [], scaleType, pivotValue, inverted, }) {
+    let scale;
+    const [min, max] = domain;
     if (min === undefined || max === undefined) {
         throw new Error('invalid domain');
     }
@@ -104,7 +40,7 @@ function getScale(_a) {
     }
     scale.domain(pivotValue !== undefined ? [min, pivotValue, max] : [min, max]);
     scale.nice();
-    var _e = __read(range, 2), rangeMin = _e[0], rangeMax = _e[1];
+    const [rangeMin, rangeMax] = range;
     if (rangeMin === undefined || rangeMax === undefined) {
         throw new Error('invalid range');
     }
@@ -147,10 +83,9 @@ exports.getOrigin = getOrigin;
  *   - stddev
  *   - scaleType (linear or log)
  */
-function getNiceDomain(_a) {
-    var scaleType = _a.scaleType, domain = _a.domain, bounds = _a.bounds;
-    var _b = __read(bounds, 2), minScore = _b[0], maxScore = _b[1];
-    var _c = __read(domain, 2), min = _c[0], max = _c[1];
+function getNiceDomain({ scaleType, domain, bounds, }) {
+    const [minScore, maxScore] = bounds;
+    let [min, max] = domain;
     if (scaleType === 'linear') {
         if (max < 0) {
             max = 0;
@@ -177,124 +112,126 @@ function getNiceDomain(_a) {
     if (maxScore !== undefined && maxScore !== Number.MAX_VALUE) {
         max = maxScore;
     }
-    var getScaleType = function (type) {
+    const getScaleType = (type) => {
         if (type === 'linear') {
             return (0, d3_scale_1.scaleLinear)();
         }
         if (type === 'log') {
-            var scale_1 = (0, d3_scale_1.scaleLog)();
-            scale_1.base(2);
-            return scale_1;
+            const scale = (0, d3_scale_1.scaleLog)();
+            scale.base(2);
+            return scale;
         }
         if (type === 'quantize') {
             return (0, d3_scale_1.scaleQuantize)();
         }
-        throw new Error("undefined scaleType ".concat(type));
+        throw new Error(`undefined scaleType ${type}`);
     };
-    var scale = getScaleType(scaleType);
+    const scale = getScaleType(scaleType);
     scale.domain([min, max]);
     scale.nice();
     return scale.domain();
 }
 exports.getNiceDomain = getNiceDomain;
 function groupBy(array, predicate) {
-    return array.reduce(function (acc, value) {
+    return array.reduce((acc, value) => {
         var _a;
-        var entry = (acc[_a = predicate(value)] || (acc[_a] = []));
+        const entry = (acc[_a = predicate(value)] || (acc[_a] = []));
         entry.push(value);
         return acc;
     }, {});
 }
 exports.groupBy = groupBy;
-function getStats(self, opts) {
-    return __awaiter(this, void 0, void 0, function () {
-        var rpcManager, nd, adapterConfig, autoscaleType, sessionId, params, results, scoreMin, scoreMean, scoreStdDev, _a, dynamicBlocks, bpPerPx, results, scoreMin, scoreMean, scoreStdDev;
-        return __generator(this, function (_b) {
-            switch (_b.label) {
-                case 0:
-                    rpcManager = (0, util_1.getSession)(self).rpcManager;
-                    nd = (0, configuration_1.getConf)(self, 'numStdDev') || 3;
-                    adapterConfig = self.adapterConfig, autoscaleType = self.autoscaleType;
-                    sessionId = (0, tracks_1.getRpcSessionId)(self);
-                    params = __assign({ sessionId: sessionId, adapterConfig: adapterConfig, statusCallback: function (message) {
-                            if ((0, mobx_state_tree_1.isAlive)(self)) {
-                                self.setMessage(message);
-                            }
-                        } }, opts);
-                    if (!(autoscaleType === 'global' || autoscaleType === 'globalsd')) return [3 /*break*/, 2];
-                    return [4 /*yield*/, rpcManager.call(sessionId, 'WiggleGetGlobalStats', params)];
-                case 1:
-                    results = (_b.sent());
-                    scoreMin = results.scoreMin, scoreMean = results.scoreMean, scoreStdDev = results.scoreStdDev;
-                    // globalsd uses heuristic to avoid unnecessary scoreMin<0
-                    // if the scoreMin is never less than 0
-                    // helps with most coverage bigwigs just being >0
-                    return [2 /*return*/, autoscaleType === 'globalsd'
-                            ? __assign(__assign({}, results), { scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev, scoreMax: scoreMean + nd * scoreStdDev }) : results];
-                case 2:
-                    if (!(autoscaleType === 'local' || autoscaleType === 'localsd')) return [3 /*break*/, 4];
-                    _a = (0, util_1.getContainingView)(self), dynamicBlocks = _a.dynamicBlocks, bpPerPx = _a.bpPerPx;
-                    return [4 /*yield*/, rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', __assign(__assign({}, params), { regions: dynamicBlocks.contentBlocks.map(function (region) {
-                                var start = region.start, end = region.end;
-                                return __assign(__assign({}, JSON.parse(JSON.stringify(region))), { start: Math.floor(start), end: Math.ceil(end) });
-                            }), bpPerPx: bpPerPx }))];
-                case 3:
-                    results = (_b.sent());
-                    scoreMin = results.scoreMin, scoreMean = results.scoreMean, scoreStdDev = results.scoreStdDev;
-                    // localsd uses heuristic to avoid unnecessary scoreMin<0 if the
-                    // scoreMin is never less than 0 helps with most coverage bigwigs
-                    // just being >0
-                    return [2 /*return*/, autoscaleType === 'localsd'
-                            ? __assign(__assign({}, results), { scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev, scoreMax: scoreMean + nd * scoreStdDev }) : results];
-                case 4:
-                    if (autoscaleType === 'zscale') {
-                        return [2 /*return*/, rpcManager.call(sessionId, 'WiggleGetGlobalStats', params)];
-                    }
-                    throw new Error("invalid autoscaleType '".concat(autoscaleType, "'"));
+async function getStats(self, opts) {
+    const { rpcManager } = (0, util_1.getSession)(self);
+    const nd = (0, configuration_1.getConf)(self, 'numStdDev') || 3;
+    const { adapterConfig, autoscaleType } = self;
+    const sessionId = (0, tracks_1.getRpcSessionId)(self);
+    const params = {
+        sessionId,
+        adapterConfig,
+        statusCallback: (message) => {
+            if ((0, mobx_state_tree_1.isAlive)(self)) {
+                self.setMessage(message);
+            }
+        },
+        ...opts,
+    };
+    if (autoscaleType === 'global' || autoscaleType === 'globalsd') {
+        const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalStats', params));
+        const { scoreMin, scoreMean, scoreStdDev } = results;
+        // globalsd uses heuristic to avoid unnecessary scoreMin<0
+        // if the scoreMin is never less than 0
+        // helps with most coverage bigwigs just being >0
+        return autoscaleType === 'globalsd'
+            ? {
+                ...results,
+                scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev,
+                scoreMax: scoreMean + nd * scoreStdDev,
             }
-        });
-    });
+            : results;
+    }
+    if (autoscaleType === 'local' || autoscaleType === 'localsd') {
+        const { dynamicBlocks, bpPerPx } = (0, util_1.getContainingView)(self);
+        const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', {
+            ...params,
+            regions: dynamicBlocks.contentBlocks.map(region => {
+                const { start, end } = region;
+                return {
+                    ...JSON.parse(JSON.stringify(region)),
+                    start: Math.floor(start),
+                    end: Math.ceil(end),
+                };
+            }),
+            bpPerPx,
+        }));
+        const { scoreMin, scoreMean, scoreStdDev } = results;
+        // localsd uses heuristic to avoid unnecessary scoreMin<0 if the
+        // scoreMin is never less than 0 helps with most coverage bigwigs
+        // just being >0
+        return autoscaleType === 'localsd'
+            ? {
+                ...results,
+                scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev,
+                scoreMax: scoreMean + nd * scoreStdDev,
+            }
+            : results;
+    }
+    if (autoscaleType === 'zscale') {
+        return rpcManager.call(sessionId, 'WiggleGetGlobalStats', params);
+    }
+    throw new Error(`invalid autoscaleType '${autoscaleType}'`);
 }
 exports.getStats = getStats;
 function statsAutorun(self) {
-    var _this = this;
-    (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(function () { return __awaiter(_this, void 0, void 0, function () {
-        var aborter, view, statsRegion, wiggleStats, e_1;
-        return __generator(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    _a.trys.push([0, 2, , 3]);
-                    aborter = new AbortController();
-                    view = (0, util_1.getContainingView)(self);
-                    self.setLoading(aborter);
-                    if (!view.initialized ||
-                        !self.estimatedStatsReady ||
-                        self.regionTooLarge) {
-                        return [2 /*return*/];
-                    }
-                    statsRegion = JSON.stringify(view.dynamicBlocks);
-                    return [4 /*yield*/, getStats(self, __assign({ signal: aborter.signal }, self.renderProps()))];
-                case 1:
-                    wiggleStats = _a.sent();
-                    if ((0, mobx_state_tree_1.isAlive)(self)) {
-                        self.updateStats(wiggleStats, statsRegion);
-                    }
-                    return [3 /*break*/, 3];
-                case 2:
-                    e_1 = _a.sent();
-                    if (!(0, util_1.isAbortException)(e_1) && (0, mobx_state_tree_1.isAlive)(self)) {
-                        console.error(e_1);
-                        self.setError(e_1);
-                    }
-                    return [3 /*break*/, 3];
-                case 3: return [2 /*return*/];
+    (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
+        try {
+            const aborter = new AbortController();
+            const view = (0, util_1.getContainingView)(self);
+            self.setLoading(aborter);
+            if (!view.initialized ||
+                !self.estimatedStatsReady ||
+                self.regionTooLarge) {
+                return;
             }
-        });
-    }); }, { delay: 1000 }));
+            const statsRegion = JSON.stringify(view.dynamicBlocks);
+            const wiggleStats = await getStats(self, {
+                signal: aborter.signal,
+                ...self.renderProps(),
+            });
+            if ((0, mobx_state_tree_1.isAlive)(self)) {
+                self.updateStats(wiggleStats, statsRegion);
+            }
+        }
+        catch (e) {
+            if (!(0, util_1.isAbortException)(e) && (0, mobx_state_tree_1.isAlive)(self)) {
+                console.error(e);
+                self.setError(e);
+            }
+        }
+    }, { delay: 1000 }));
 }
 exports.statsAutorun = statsAutorun;
-function toP(s) {
-    if (s === void 0) { s = 0; }
+function toP(s = 0) {
     return +(+s).toPrecision(6);
 }
 exports.toP = toP;

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package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts

@@ -22,6 +22,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
     }>;
     getSources(): Promise<{
         name: unknown;
+        __name: unknown;
     }[]>;
     freeResources(): void;
 }