@jbrowse/plugin-wiggle 2.1.0 → 2.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (141) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +74 -200
  2. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  3. package/dist/BigWigAdapter/configSchema.js +1 -1
  4. package/dist/BigWigAdapter/configSchema.js.map +1 -1
  5. package/dist/BigWigAdapter/index.js +14 -16
  6. package/dist/BigWigAdapter/index.js.map +1 -1
  7. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +12 -29
  8. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -1
  9. package/dist/CreateMultiWiggleExtension/index.js +23 -57
  10. package/dist/CreateMultiWiggleExtension/index.js.map +1 -1
  11. package/dist/DensityRenderer/DensityRenderer.js +6 -66
  12. package/dist/DensityRenderer/DensityRenderer.js.map +1 -1
  13. package/dist/DensityRenderer/configSchema.js +3 -3
  14. package/dist/DensityRenderer/configSchema.js.map +1 -1
  15. package/dist/DensityRenderer/index.js +11 -13
  16. package/dist/DensityRenderer/index.js.map +1 -1
  17. package/dist/LinePlotRenderer/LinePlotRenderer.js +11 -78
  18. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  19. package/dist/LinePlotRenderer/configSchema.js +3 -3
  20. package/dist/LinePlotRenderer/configSchema.js.map +1 -1
  21. package/dist/LinePlotRenderer/index.js +11 -13
  22. package/dist/LinePlotRenderer/index.js.map +1 -1
  23. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +18 -35
  24. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  25. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
  26. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
  27. package/dist/LinearWiggleDisplay/components/Tooltip.js +15 -26
  28. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  29. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +15 -26
  30. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  31. package/dist/LinearWiggleDisplay/components/YScaleBar.js +6 -18
  32. package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -1
  33. package/dist/LinearWiggleDisplay/index.js +12 -12
  34. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  35. package/dist/LinearWiggleDisplay/models/configSchema.js +6 -6
  36. package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
  37. package/dist/LinearWiggleDisplay/models/model.js +378 -451
  38. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  39. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +32 -125
  40. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  41. package/dist/MultiDensityRenderer/configSchema.js +3 -3
  42. package/dist/MultiDensityRenderer/configSchema.js.map +1 -1
  43. package/dist/MultiDensityRenderer/index.js +11 -13
  44. package/dist/MultiDensityRenderer/index.js.map +1 -1
  45. package/dist/MultiLineRenderer/MultiLineRenderer.js +21 -114
  46. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  47. package/dist/MultiLineRenderer/configSchema.js +4 -4
  48. package/dist/MultiLineRenderer/configSchema.js.map +1 -1
  49. package/dist/MultiLineRenderer/index.js +11 -13
  50. package/dist/MultiLineRenderer/index.js.map +1 -1
  51. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +72 -120
  52. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  53. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
  54. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
  55. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +21 -50
  56. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -1
  57. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
  58. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +53 -92
  59. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  60. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +6 -18
  61. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -1
  62. package/dist/MultiLinearWiggleDisplay/components/util.js +16 -18
  63. package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -1
  64. package/dist/MultiLinearWiggleDisplay/index.js +9 -9
  65. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
  66. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +8 -8
  67. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  68. package/dist/MultiLinearWiggleDisplay/models/model.js +489 -566
  69. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  70. package/dist/MultiQuantitativeTrack/index.js +8 -8
  71. package/dist/MultiQuantitativeTrack/index.js.map +1 -1
  72. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +29 -121
  73. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  74. package/dist/MultiRowLineRenderer/configSchema.js +4 -4
  75. package/dist/MultiRowLineRenderer/configSchema.js.map +1 -1
  76. package/dist/MultiRowLineRenderer/index.js +11 -13
  77. package/dist/MultiRowLineRenderer/index.js.map +1 -1
  78. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -131
  79. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  80. package/dist/MultiRowXYPlotRenderer/configSchema.js +4 -4
  81. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -1
  82. package/dist/MultiRowXYPlotRenderer/index.js +11 -13
  83. package/dist/MultiRowXYPlotRenderer/index.js.map +1 -1
  84. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -0
  85. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +80 -232
  86. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  87. package/dist/MultiWiggleAdapter/configSchema.js +1 -1
  88. package/dist/MultiWiggleAdapter/configSchema.js.map +1 -1
  89. package/dist/MultiWiggleAdapter/index.js +14 -18
  90. package/dist/MultiWiggleAdapter/index.js.map +1 -1
  91. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +30 -56
  92. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  93. package/dist/MultiWiggleAddTrackWidget/index.js +10 -12
  94. package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -1
  95. package/dist/MultiWiggleRendering.js +45 -109
  96. package/dist/MultiWiggleRendering.js.map +1 -1
  97. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +24 -120
  98. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  99. package/dist/MultiXYPlotRenderer/configSchema.js +4 -4
  100. package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -1
  101. package/dist/MultiXYPlotRenderer/index.js +11 -13
  102. package/dist/MultiXYPlotRenderer/index.js.map +1 -1
  103. package/dist/QuantitativeTrack/index.js +8 -8
  104. package/dist/QuantitativeTrack/index.js.map +1 -1
  105. package/dist/Tooltip.js +26 -54
  106. package/dist/Tooltip.js.map +1 -1
  107. package/dist/WiggleBaseRenderer.d.ts +6 -6
  108. package/dist/WiggleBaseRenderer.js +34 -125
  109. package/dist/WiggleBaseRenderer.js.map +1 -1
  110. package/dist/WiggleRPC/rpcMethods.d.ts +2 -2
  111. package/dist/WiggleRPC/rpcMethods.js +101 -244
  112. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  113. package/dist/WiggleRendering.js +20 -69
  114. package/dist/WiggleRendering.js.map +1 -1
  115. package/dist/XYPlotRenderer/XYPlotRenderer.js +24 -121
  116. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  117. package/dist/XYPlotRenderer/configSchema.js +4 -4
  118. package/dist/XYPlotRenderer/configSchema.js.map +1 -1
  119. package/dist/XYPlotRenderer/index.js +11 -13
  120. package/dist/XYPlotRenderer/index.js.map +1 -1
  121. package/dist/configSchema.js +2 -2
  122. package/dist/configSchema.js.map +1 -1
  123. package/dist/drawxy.js +192 -311
  124. package/dist/drawxy.js.map +1 -1
  125. package/dist/index.js +44 -62
  126. package/dist/index.js.map +1 -1
  127. package/dist/util.js +105 -168
  128. package/dist/util.js.map +1 -1
  129. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -0
  130. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +5 -3
  131. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  132. package/esm/WiggleBaseRenderer.d.ts +6 -6
  133. package/esm/WiggleBaseRenderer.js +4 -3
  134. package/esm/WiggleBaseRenderer.js.map +1 -1
  135. package/esm/WiggleRPC/rpcMethods.d.ts +2 -2
  136. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  137. package/package.json +2 -3
  138. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +7 -3
  139. package/src/WiggleBaseRenderer.tsx +4 -3
  140. package/src/WiggleRPC/rpcMethods.ts +8 -2
  141. package/src/declare.d.ts +0 -2
@@ -1,210 +1,84 @@
1
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  "use strict";
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- var __extends = (this && this.__extends) || (function () {
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- var extendStatics = function (d, b) {
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- extendStatics = Object.setPrototypeOf ||
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- ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
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- function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
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- return extendStatics(d, b);
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- };
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- return function (d, b) {
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- if (typeof b !== "function" && b !== null)
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- throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
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- extendStatics(d, b);
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- function __() { this.constructor = d; }
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- d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
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- };
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- })();
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- var __assign = (this && this.__assign) || function () {
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- __assign = Object.assign || function(t) {
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- for (var s, i = 1, n = arguments.length; i < n; i++) {
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- s = arguments[i];
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- for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
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- t[p] = s[p];
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- }
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- return t;
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- };
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- return __assign.apply(this, arguments);
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- };
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- var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
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- function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
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- return new (P || (P = Promise))(function (resolve, reject) {
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- function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
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- function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
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- function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
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- step((generator = generator.apply(thisArg, _arguments || [])).next());
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- });
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- };
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- var __generator = (this && this.__generator) || function (thisArg, body) {
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- var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
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- return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
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- function verb(n) { return function (v) { return step([n, v]); }; }
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- function step(op) {
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- if (f) throw new TypeError("Generator is already executing.");
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- while (_) try {
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- if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
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- if (y = 0, t) op = [op[0] & 2, t.value];
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- switch (op[0]) {
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- case 0: case 1: t = op; break;
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- case 4: _.label++; return { value: op[1], done: false };
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- case 5: _.label++; y = op[1]; op = [0]; continue;
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- case 7: op = _.ops.pop(); _.trys.pop(); continue;
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- default:
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- if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
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- if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
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- if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
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- if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
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- if (t[2]) _.ops.pop();
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- _.trys.pop(); continue;
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- }
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- op = body.call(thisArg, _);
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- } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
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- if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
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- }
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- };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- var bbi_1 = require("@gmod/bbi");
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- var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
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- var io_1 = require("@jbrowse/core/util/io");
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- var util_1 = require("@jbrowse/core/util");
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- var rxjs_1 = require("@jbrowse/core/util/rxjs");
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- var stats_1 = require("@jbrowse/core/util/stats");
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- var BigWigAdapter = /** @class */ (function (_super) {
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- __extends(BigWigAdapter, _super);
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- function BigWigAdapter() {
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- return _super !== null && _super.apply(this, arguments) || this;
75
- }
76
- BigWigAdapter.prototype.setupPre = function (opts) {
77
- return __awaiter(this, void 0, void 0, function () {
78
- var _a, statusCallback, bigwig, header;
79
- return __generator(this, function (_b) {
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- switch (_b.label) {
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- case 0:
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- _a = (opts || {}).statusCallback, statusCallback = _a === void 0 ? function () { } : _a;
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- bigwig = new bbi_1.BigWig({
84
- filehandle: (0, io_1.openLocation)(this.getConf('bigWigLocation'), this.pluginManager),
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- });
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- return [4 /*yield*/, (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, function () { return bigwig.getHeader(opts); })];
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- case 1:
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- header = _b.sent();
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- return [2 /*return*/, { bigwig: bigwig, header: header }];
90
- }
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- });
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- });
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- };
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- BigWigAdapter.prototype.setup = function (opts) {
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- return __awaiter(this, void 0, void 0, function () {
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- var _this = this;
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- return __generator(this, function (_a) {
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- if (!this.setupP) {
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- this.setupP = this.setupPre(opts).catch(function (e) {
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- _this.setupP = undefined;
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- throw e;
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- });
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- }
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- return [2 /*return*/, this.setupP];
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- });
3
+ const bbi_1 = require("@gmod/bbi");
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+ const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
5
+ const io_1 = require("@jbrowse/core/util/io");
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+ const util_1 = require("@jbrowse/core/util");
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+ const rxjs_1 = require("@jbrowse/core/util/rxjs");
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+ const stats_1 = require("@jbrowse/core/util/stats");
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+ class BigWigAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
10
+ async setupPre(opts) {
11
+ const { statusCallback = () => { } } = opts || {};
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+ const bigwig = new bbi_1.BigWig({
13
+ filehandle: (0, io_1.openLocation)(this.getConf('bigWigLocation'), this.pluginManager),
106
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  });
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- };
108
- BigWigAdapter.prototype.getRefNames = function (opts) {
109
- return __awaiter(this, void 0, void 0, function () {
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- var refsByName;
111
- return __generator(this, function (_a) {
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- switch (_a.label) {
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- case 0: return [4 /*yield*/, this.setup(opts)];
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- case 1:
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- refsByName = (_a.sent()).header.refsByName;
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- return [2 /*return*/, Object.keys(refsByName)];
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- }
15
+ const header = await (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, () => bigwig.getHeader(opts));
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+ return { bigwig, header };
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+ }
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+ async setup(opts) {
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+ if (!this.setupP) {
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+ this.setupP = this.setupPre(opts).catch(e => {
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+ this.setupP = undefined;
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+ throw e;
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  });
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- });
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- };
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- BigWigAdapter.prototype.refIdToName = function (refId) {
24
+ }
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+ return this.setupP;
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+ }
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+ async getRefNames(opts) {
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+ const { header: { refsByName }, } = await this.setup(opts);
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+ return Object.keys(refsByName);
30
+ }
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+ async refIdToName(refId) {
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  var _a;
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- return __awaiter(this, void 0, void 0, function () {
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- var refsByNumber;
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- return __generator(this, function (_b) {
126
- switch (_b.label) {
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- case 0: return [4 /*yield*/, this.setup()];
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- case 1:
129
- refsByNumber = (_b.sent()).header.refsByNumber;
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- return [2 /*return*/, (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name];
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- }
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- });
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- });
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- };
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- BigWigAdapter.prototype.getGlobalStats = function (opts) {
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- return __awaiter(this, void 0, void 0, function () {
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- var totalSummary;
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- return __generator(this, function (_a) {
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- switch (_a.label) {
140
- case 0: return [4 /*yield*/, this.setup(opts)];
141
- case 1:
142
- totalSummary = (_a.sent()).header.totalSummary;
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- return [2 /*return*/, (0, stats_1.rectifyStats)(totalSummary)];
144
- }
33
+ const { header: { refsByNumber }, } = await this.setup();
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+ return (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name;
35
+ }
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+ async getGlobalStats(opts) {
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+ const { header: { totalSummary }, } = await this.setup(opts);
38
+ return (0, stats_1.rectifyStats)(totalSummary);
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+ }
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+ getFeatures(region, opts = {}) {
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+ const { refName, start, end } = region;
42
+ const { bpPerPx = 0, signal, resolution = 1, statusCallback = () => { }, } = opts;
43
+ return (0, rxjs_1.ObservableCreate)(async (observer) => {
44
+ statusCallback('Downloading bigwig data');
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+ const source = this.getConf('source');
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+ const { bigwig } = await this.setup(opts);
47
+ const feats = await bigwig.getFeatures(refName, start, end, {
48
+ ...opts,
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+ basesPerSpan: bpPerPx / resolution,
145
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  });
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- });
147
- };
148
- BigWigAdapter.prototype.getFeatures = function (region, opts) {
149
- var _this = this;
150
- if (opts === void 0) { opts = {}; }
151
- var refName = region.refName, start = region.start, end = region.end;
152
- var _a = opts.bpPerPx, bpPerPx = _a === void 0 ? 0 : _a, signal = opts.signal, _b = opts.resolution, resolution = _b === void 0 ? 1 : _b, _c = opts.statusCallback, statusCallback = _c === void 0 ? function () { } : _c;
153
- return (0, rxjs_1.ObservableCreate)(function (observer) { return __awaiter(_this, void 0, void 0, function () {
154
- var source, bigwig, feats, _loop_1, i;
155
- return __generator(this, function (_a) {
156
- switch (_a.label) {
157
- case 0:
158
- statusCallback('Downloading bigwig data');
159
- source = this.getConf('source');
160
- return [4 /*yield*/, this.setup(opts)];
161
- case 1:
162
- bigwig = (_a.sent()).bigwig;
163
- return [4 /*yield*/, bigwig.getFeatures(refName, start, end, __assign(__assign({}, opts), { basesPerSpan: bpPerPx / resolution }))];
164
- case 2:
165
- feats = _a.sent();
166
- _loop_1 = function (i) {
167
- var data = feats[i];
168
- if (source) {
169
- // @ts-ignore
170
- data.source = source;
171
- }
172
- var uniqueId = "".concat(source, ":").concat(region.refName, ":").concat(data.start, "-").concat(data.end);
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- // @ts-ignore
174
- data.refName = refName;
175
- data.uniqueId = uniqueId;
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- observer.next({
177
- // @ts-ignore
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- get: function (str) { return data[str]; },
179
- id: function () { return uniqueId; },
180
- // @ts-ignore
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- toJSON: function () { return data; },
182
- });
183
- };
184
- for (i = 0; i < feats.length; i++) {
185
- _loop_1(i);
186
- }
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- observer.complete();
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- return [2 /*return*/];
51
+ for (let i = 0; i < feats.length; i++) {
52
+ const data = feats[i];
53
+ if (source) {
54
+ // @ts-ignore
55
+ data.source = source;
189
56
  }
190
- });
191
- }); }, signal);
192
- };
57
+ const uniqueId = `${source}:${region.refName}:${data.start}-${data.end}`;
58
+ // @ts-ignore
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+ data.refName = refName;
60
+ data.uniqueId = uniqueId;
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+ observer.next({
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+ // @ts-ignore
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+ get: (str) => data[str],
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+ id: () => uniqueId,
65
+ // @ts-ignore
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+ toJSON: () => data,
67
+ });
68
+ }
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+ observer.complete();
70
+ }, signal);
71
+ }
193
72
  // always render bigwig instead of calculating a feature density for it
194
- BigWigAdapter.prototype.estimateRegionsStats = function (_regions) {
195
- return __awaiter(this, void 0, void 0, function () {
196
- return __generator(this, function (_a) {
197
- return [2 /*return*/, { featureDensity: 0 }];
198
- });
199
- });
200
- };
201
- BigWigAdapter.prototype.freeResources = function () { };
202
- BigWigAdapter.capabilities = [
203
- 'hasResolution',
204
- 'hasLocalStats',
205
- 'hasGlobalStats',
206
- ];
207
- return BigWigAdapter;
208
- }(BaseAdapter_1.BaseFeatureDataAdapter));
73
+ async estimateRegionsStats(_regions) {
74
+ return { featureDensity: 0 };
75
+ }
76
+ freeResources() { }
77
+ }
209
78
  exports.default = BigWigAdapter;
79
+ BigWigAdapter.capabilities = [
80
+ 'hasResolution',
81
+ 'hasLocalStats',
82
+ 'hasGlobalStats',
83
+ ];
210
84
  //# sourceMappingURL=BigWigAdapter.js.map
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"BigWigAdapter.js","sourceRoot":"","sources":["../../src/BigWigAdapter/BigWigAdapter.ts"],"names":[],"mappings":";;AAAA,mCAAkC;AAClC,yEAGgD;AAEhD,8CAAoD;AACpD,6CAA0D;AAC1D,kDAA0D;AAC1D,oDAAgF;AAMhF,MAAqB,aAAc,SAAQ,oCAAsB;IAUvD,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,MAAM,GAAG,IAAI,YAAM,CAAC;YACxB,UAAU,EAAE,IAAA,iBAAY,EACtB,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,EAC9B,IAAI,CAAC,aAAa,CACnB;SACF,CAAC,CAAA;QACF,MAAM,MAAM,GAAG,MAAM,IAAA,mBAAY,EAC/B,2BAA2B,EAC3B,cAAc,EACd,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,CAC7B,CAAA;QACD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAA;IAC3B,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,EACJ,MAAM,EAAE,EAAE,UAAU,EAAE,GACvB,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC1B,OAAO,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;IAChC,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,KAAa;;QACpC,MAAM,EACJ,MAAM,EAAE,EAAE,YAAY,EAAE,GACzB,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtB,OAAO,MAAA,YAAY,CAAC,KAAK,CAAC,0CAAE,IAAI,CAAA;IAClC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,EACJ,MAAM,EAAE,EAAE,YAAY,EAAE,GACzB,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC1B,OAAO,IAAA,oBAAY,EAAC,YAAuC,CAAC,CAAA;IAC9D,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;QACtC,MAAM,EACJ,OAAO,GAAG,CAAC,EACX,MAAM,EACN,UAAU,GAAG,CAAC,EACd,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,IAAI,CAAA;QACR,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,cAAc,CAAC,yBAAyB,CAAC,CAAA;YACzC,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;YACrC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACzC,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBAC1D,GAAG,IAAI;gBACP,YAAY,EAAE,OAAO,GAAG,UAAU;aACnC,CAAC,CAAA;YAEF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;gBACrB,IAAI,MAAM,EAAE;oBACV,aAAa;oBACb,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;iBACrB;gBACD,MAAM,QAAQ,GAAG,GAAG,MAAM,IAAI,MAAM,CAAC,OAAO,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,GAAG,EAAE,CAAA;gBACxE,aAAa;gBACb,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;gBACtB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;gBACxB,QAAQ,CAAC,IAAI,CAAC;oBACZ,aAAa;oBACb,GAAG,EAAE,CAAC,GAAW,EAAE,EAAE,CAAE,IAAgC,CAAC,GAAG,CAAC;oBAC5D,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ;oBAClB,aAAa;oBACb,MAAM,EAAE,GAAG,EAAE,CAAC,IAAI;iBACnB,CAAC,CAAA;aACH;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAEM,aAAa,KAAU,CAAC;;AArGjC,gCAsGC;AAlGe,0BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- var configuration_1 = require("@jbrowse/core/configuration");
3
+ const configuration_1 = require("@jbrowse/core/configuration");
4
4
  exports.default = (0, configuration_1.ConfigurationSchema)('BigWigAdapter', {
5
5
  bigWigLocation: {
6
6
  type: 'fileLocation',
@@ -1 +1 @@
1
- {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
@@ -26,20 +26,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
26
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
27
  };
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
- var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
30
- var configSchema_1 = __importDefault(require("./configSchema"));
31
- exports.default = (function (pluginManager) {
32
- pluginManager.addAdapterType(function () {
33
- return new AdapterType_1.default({
34
- name: 'BigWigAdapter',
35
- configSchema: configSchema_1.default,
36
- adapterCapabilities: [
37
- 'hasResolution',
38
- 'hasLocalStats',
39
- 'hasGlobalStats',
40
- ],
41
- getAdapterClass: function () { return Promise.resolve().then(function () { return __importStar(require('./BigWigAdapter')); }).then(function (r) { return r.default; }); },
42
- });
43
- });
44
- });
29
+ const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
30
+ const configSchema_1 = __importDefault(require("./configSchema"));
31
+ exports.default = (pluginManager) => {
32
+ pluginManager.addAdapterType(() => new AdapterType_1.default({
33
+ name: 'BigWigAdapter',
34
+ configSchema: configSchema_1.default,
35
+ adapterCapabilities: [
36
+ 'hasResolution',
37
+ 'hasLocalStats',
38
+ 'hasGlobalStats',
39
+ ],
40
+ getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigWigAdapter'))).then(r => r.default),
41
+ }));
42
+ };
45
43
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gGAAyE;AACzE,gEAAyC;AAEzC,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAC1B;QACE,OAAA,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,eAAe;YACrB,YAAY,wBAAA;YACZ,mBAAmB,EAAE;gBACnB,eAAe;gBACf,eAAe;gBACf,gBAAgB;aACjB;YACD,eAAe,EAAE,cAAM,OAAA,iEAAO,iBAAiB,OAAE,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC,EAA9C,CAA8C;SACtE,CAAC;IATF,CASE,CACL,CAAA;AACH,CAAC,EAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AACzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,kDAAO,iBAAiB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -22,31 +22,14 @@ var __importStar = (this && this.__importStar) || function (mod) {
22
22
  __setModuleDefault(result, mod);
23
23
  return result;
24
24
  };
25
- var __read = (this && this.__read) || function (o, n) {
26
- var m = typeof Symbol === "function" && o[Symbol.iterator];
27
- if (!m) return o;
28
- var i = m.call(o), r, ar = [], e;
29
- try {
30
- while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
31
- }
32
- catch (error) { e = { error: error }; }
33
- finally {
34
- try {
35
- if (r && !r.done && (m = i["return"])) m.call(i);
36
- }
37
- finally { if (e) throw e.error; }
38
- }
39
- return ar;
40
- };
41
25
  Object.defineProperty(exports, "__esModule", { value: true });
42
- var react_1 = __importStar(require("react"));
43
- var material_1 = require("@mui/material");
44
- var configuration_1 = require("@jbrowse/core/configuration");
45
- var ConfirmDialog = function (_a) {
46
- var tracks = _a.tracks, onClose = _a.onClose;
47
- var _b = __read((0, react_1.useState)('MultiWiggle ' + Date.now()), 2), val = _b[0], setVal = _b[1];
48
- var allQuant = tracks.every(function (t) { return t.type === 'QuantitativeTrack'; });
49
- return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: function () { return onClose(false); } },
26
+ const react_1 = __importStar(require("react"));
27
+ const material_1 = require("@mui/material");
28
+ const configuration_1 = require("@jbrowse/core/configuration");
29
+ const ConfirmDialog = ({ tracks, onClose, }) => {
30
+ const [val, setVal] = (0, react_1.useState)('MultiWiggle ' + Date.now());
31
+ const allQuant = tracks.every(t => t.type === 'QuantitativeTrack');
32
+ return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: () => onClose(false) },
50
33
  react_1.default.createElement(material_1.DialogTitle, null, "Confirm multi-wiggle track create"),
51
34
  react_1.default.createElement(material_1.DialogContent, null,
52
35
  react_1.default.createElement(material_1.Typography, null,
@@ -54,15 +37,15 @@ var ConfirmDialog = function (_a) {
54
37
  ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
55
38
  : null,
56
39
  "Listing:"),
57
- react_1.default.createElement("ul", null, tracks.map(function (track) { return (react_1.default.createElement("li", { key: track.trackId },
40
+ react_1.default.createElement("ul", null, tracks.map(track => (react_1.default.createElement("li", { key: track.trackId },
58
41
  (0, configuration_1.readConfObject)(track, 'name'),
59
42
  " - ",
60
- track.type)); })),
61
- react_1.default.createElement(material_1.TextField, { value: val, onChange: function (event) { return setVal(event.target.value); }, helperText: "Track name" }),
43
+ track.type)))),
44
+ react_1.default.createElement(material_1.TextField, { value: val, onChange: event => setVal(event.target.value), helperText: "Track name" }),
62
45
  react_1.default.createElement(material_1.Typography, null, "Confirm creation of track?")),
63
46
  react_1.default.createElement(material_1.DialogActions, null,
64
- react_1.default.createElement(material_1.Button, { onClick: function () { return onClose(false); }, color: "primary" }, "Cancel"),
65
- react_1.default.createElement(material_1.Button, { onClick: function () { return onClose(true, { name: val }); }, color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
47
+ react_1.default.createElement(material_1.Button, { onClick: () => onClose(false), color: "primary" }, "Cancel"),
48
+ react_1.default.createElement(material_1.Button, { onClick: () => onClose(true, { name: val }), color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
66
49
  };
67
50
  exports.default = ConfirmDialog;
68
51
  //# sourceMappingURL=ConfirmDialog.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"ConfirmDialog.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/ConfirmDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,6CAAuC;AACvC,0CAQsB;AACtB,6DAGoC;AAEpC,IAAM,aAAa,GAAG,UAAC,EAMtB;QALC,MAAM,YAAA,EACN,OAAO,aAAA;IAKD,IAAA,KAAA,OAAgB,IAAA,gBAAQ,EAAC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,IAAA,EAApD,GAAG,QAAA,EAAE,MAAM,QAAyC,CAAA;IAC3D,IAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,mBAAmB,EAA9B,CAA8B,CAAC,CAAA;IAClE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,KAAK,CAAC,EAAd,CAAc;QACxC,8BAAC,sBAAW,4CAAgD;QAC5D,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;gBACR,CAAC,QAAQ;oBACR,CAAC,CAAC,8GAA8G;oBAChH,CAAC,CAAC,IAAI;2BAEG;YACb,0CACG,MAAM,CAAC,GAAG,CAAC,UAAA,KAAK,IAAI,OAAA,CACnB,sCAAI,GAAG,EAAE,KAAK,CAAC,OAAO;gBACnB,IAAA,8BAAc,EAAC,KAAK,EAAE,MAAM,CAAC;;gBAAK,KAAK,CAAC,IAAI,CAC1C,CACN,EAJoB,CAIpB,CAAC,CACC;YACL,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,UAAA,KAAK,IAAI,OAAA,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAA1B,CAA0B,EAC7C,UAAU,EAAC,YAAY,GACvB;YACF,8BAAC,qBAAU,qCAAwC,CACrC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,KAAK,CAAC,EAAd,CAAc,EAAE,KAAK,EAAC,SAAS,aAE7C;YACT,8BAAC,iBAAM,IACL,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAA5B,CAA4B,EAC3C,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,SAAS,mBAGF,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,aAAa,CAAA"}
1
+ {"version":3,"file":"ConfirmDialog.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/ConfirmDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAQsB;AACtB,+DAGoC;AAEpC,MAAM,aAAa,GAAG,CAAC,EACrB,MAAM,EACN,OAAO,GAIR,EAAE,EAAE;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAAC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,CAAA;IAC3D,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,mBAAmB,CAAC,CAAA;IAClE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QACxC,8BAAC,sBAAW,4CAAgD;QAC5D,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;gBACR,CAAC,QAAQ;oBACR,CAAC,CAAC,8GAA8G;oBAChH,CAAC,CAAC,IAAI;2BAEG;YACb,0CACG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACnB,sCAAI,GAAG,EAAE,KAAK,CAAC,OAAO;gBACnB,IAAA,8BAAc,EAAC,KAAK,EAAE,MAAM,CAAC;;gBAAK,KAAK,CAAC,IAAI,CAC1C,CACN,CAAC,CACC;YACL,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,UAAU,EAAC,YAAY,GACvB;YACF,8BAAC,qBAAU,qCAAwC,CACrC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,KAAK,EAAC,SAAS,aAE7C;YACT,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAC3C,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,SAAS,mBAGF,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,aAAa,CAAA"}
@@ -1,15 +1,4 @@
1
1
  "use strict";
2
- var __assign = (this && this.__assign) || function () {
3
- __assign = Object.assign || function(t) {
4
- for (var s, i = 1, n = arguments.length; i < n; i++) {
5
- s = arguments[i];
6
- for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
7
- t[p] = s[p];
8
- }
9
- return t;
10
- };
11
- return __assign.apply(this, arguments);
12
- };
13
2
  var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
14
3
  if (k2 === undefined) k2 = k;
15
4
  var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -33,75 +22,52 @@ var __importStar = (this && this.__importStar) || function (mod) {
33
22
  __setModuleDefault(result, mod);
34
23
  return result;
35
24
  };
36
- var __read = (this && this.__read) || function (o, n) {
37
- var m = typeof Symbol === "function" && o[Symbol.iterator];
38
- if (!m) return o;
39
- var i = m.call(o), r, ar = [], e;
40
- try {
41
- while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
42
- }
43
- catch (error) { e = { error: error }; }
44
- finally {
45
- try {
46
- if (r && !r.done && (m = i["return"])) m.call(i);
47
- }
48
- finally { if (e) throw e.error; }
49
- }
50
- return ar;
51
- };
52
- var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
53
- if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
54
- if (ar || !(i in from)) {
55
- if (!ar) ar = Array.prototype.slice.call(from, 0, i);
56
- ar[i] = from[i];
57
- }
58
- }
59
- return to.concat(ar || Array.prototype.slice.call(from));
60
- };
61
25
  Object.defineProperty(exports, "__esModule", { value: true });
62
- var react_1 = require("react");
63
- var configuration_1 = require("@jbrowse/core/configuration");
64
- var util_1 = require("@jbrowse/core/util");
65
- var ConfirmDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./ConfirmDialog')); }); });
26
+ const react_1 = require("react");
27
+ const configuration_1 = require("@jbrowse/core/configuration");
28
+ const util_1 = require("@jbrowse/core/util");
29
+ const ConfirmDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfirmDialog'))));
66
30
  function default_1(pm) {
67
- pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', function () {
31
+ pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', () => {
68
32
  return [
69
33
  {
70
34
  label: 'Create multi-wiggle track',
71
- onClick: function (model) {
72
- var tracks = model.selection;
73
- var trackIds = tracks.map(function (c) { return (0, configuration_1.readConfObject)(c, 'name'); });
35
+ onClick: (model) => {
36
+ const tracks = model.selection;
37
+ const trackIds = tracks.map(c => (0, configuration_1.readConfObject)(c, 'name'));
74
38
  function makeTrack(arg) {
75
- var subadapters = tracks
76
- .map(function (c) { return (0, configuration_1.readConfObject)(c, 'adapter'); })
77
- .map(function (c, idx) { return (__assign(__assign({}, c), { source: trackIds[idx] })); });
78
- var assemblyNames = __spreadArray([], __read(new Set(tracks.map(function (c) { return (0, configuration_1.readConfObject)(c, 'assemblyNames'); }).flat())), false);
79
- var now = +Date.now();
80
- var trackId = "multitrack-".concat(now, "-sessionTrack");
39
+ const subadapters = tracks
40
+ .map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
41
+ .map((c, idx) => ({ ...c, source: trackIds[idx] }));
42
+ const assemblyNames = [
43
+ ...new Set(tracks.map(c => (0, configuration_1.readConfObject)(c, 'assemblyNames')).flat()),
44
+ ];
45
+ const now = +Date.now();
46
+ const trackId = `multitrack-${now}-sessionTrack`;
81
47
  (0, util_1.getSession)(model).addTrackConf({
82
48
  type: 'MultiQuantitativeTrack',
83
- trackId: trackId,
49
+ trackId,
84
50
  name: arg.name,
85
- assemblyNames: assemblyNames,
51
+ assemblyNames,
86
52
  adapter: {
87
53
  type: 'MultiWiggleAdapter',
88
- subadapters: subadapters,
54
+ subadapters,
89
55
  },
90
56
  });
91
57
  model.view.showTrack(trackId);
92
58
  }
93
- (0, util_1.getSession)(model).queueDialog(function (handleClose) { return [
59
+ (0, util_1.getSession)(model).queueDialog(handleClose => [
94
60
  ConfirmDialog,
95
61
  {
96
- tracks: tracks,
97
- onClose: function (arg, arg1) {
62
+ tracks,
63
+ onClose: (arg, arg1) => {
98
64
  if (arg) {
99
65
  makeTrack(arg1);
100
66
  }
101
67
  handleClose();
102
68
  },
103
69
  },
104
- ]; });
70
+ ]);
105
71
  },
106
72
  },
107
73
  ];
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAA4B;AAE5B,+DAA4D;AAC5D,6CAA+C;AAG/C,MAAM,aAAa,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,iBAAiB,GAAC,CAAC,CAAA;AAE3D,mBAAyB,EAAiB;IACxC,EAAE,CAAC,mBAAmB,CAAC,mCAAmC,EAAE,GAAG,EAAE;QAC/D,OAAO;YACL;gBACE,KAAK,EAAE,2BAA2B;gBAClC,OAAO,EAAE,CAAC,KAAqC,EAAE,EAAE;oBACjD,MAAM,MAAM,GAAG,KAAK,CAAC,SAAS,CAAA;oBAC9B,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,8BAAc,EAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAA;oBAC3D,SAAS,SAAS,CAAC,GAAqB;wBACtC,MAAM,WAAW,GAAG,MAAM;6BACvB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,8BAAc,EAAC,CAAC,EAAE,SAAS,CAAC,CAAC;6BACtC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;wBACrD,MAAM,aAAa,GAAG;4BACpB,GAAG,IAAI,GAAG,CACR,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC,IAAI,EAAE,CAC3D;yBACF,CAAA;wBACD,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,CAAA;wBACvB,MAAM,OAAO,GAAG,cAAc,GAAG,eAAe,CAAA;wBAEhD,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,wBAAwB;4BAC9B,OAAO;4BACP,IAAI,EAAE,GAAG,CAAC,IAAI;4BACd,aAAa;4BACb,OAAO,EAAE;gCACP,IAAI,EAAE,oBAAoB;gCAC1B,WAAW;6BACZ;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;oBAC/B,CAAC;oBACD,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;wBAC3C,aAAa;wBACb;4BACE,MAAM;4BACN,OAAO,EAAE,CAAC,GAAY,EAAE,IAAsB,EAAE,EAAE;gCAChD,IAAI,GAAG,EAAE;oCACP,SAAS,CAAC,IAAI,CAAC,CAAA;iCAChB;gCACD,WAAW,EAAE,CAAA;4BACf,CAAC;yBACF;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAhDD,4BAgDC"}