@jbrowse/plugin-wiggle 2.0.0 → 2.1.2

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js

@@ -0,0 +1,39 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const util_1 = require("../util");
+const drawxy_1 = require("../drawxy");
+const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
+    // @ts-ignore
+    async draw(ctx, props) {
+        const { bpPerPx, sources, regions, features } = props;
+        const [region] = regions;
+        const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
+        const height = props.height / Object.keys(groups).length;
+        const width = (region.end - region.start) / bpPerPx;
+        let feats = [];
+        ctx.save();
+        sources.forEach(source => {
+            const { reducedFeatures } = (0, drawxy_1.drawLine)(ctx, {
+                ...props,
+                features: groups[source.name],
+                height,
+                colorCallback: () => source.color || 'blue',
+            });
+            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+            ctx.beginPath();
+            ctx.moveTo(0, height);
+            ctx.lineTo(width, height);
+            ctx.stroke();
+            ctx.translate(0, height);
+            feats = feats.concat(reducedFeatures);
+        });
+        ctx.restore();
+        return { reducedFeatures: feats };
+    }
+}
+exports.default = MultiRowLineRenderer;
+//# sourceMappingURL=MultiRowLineRenderer.js.map

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiRowLineRenderer.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/MultiRowLineRenderer.ts"],"names":[],"mappings":";;;;;AACA,kCAAiC;AACjC,sCAAoC;AACpC,+EAE8B;AAE9B,MAAqB,oBAAqB,SAAQ,4BAAkB;IAClE,aAAa;IACb,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;gBAC7B,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;QACvC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AA5BD,uCA4BC"}

package/dist/MultiRowLineRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiRowLineRenderer/configSchema.js

@@ -0,0 +1,23 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const mobx_state_tree_1 = require("mobx-state-tree");
+const configuration_1 = require("@jbrowse/core/configuration");
+const configSchema_1 = __importDefault(require("../configSchema"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRenderer', {
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'avg',
+    },
+}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiRowLineRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,qDAAuC;AAEvC,+DAAiE;AACjE,mEAA0C;AAE1C,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,sBAAsB,EACtB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/MultiRowLineRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiRowLineRenderer/index.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+const MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
+const configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiRowLineRenderer_1.default({
+        name: 'MultiRowLineRenderer',
+        ReactComponent: MultiWiggleRendering_1.default,
+        configSchema: configSchema_1.default,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/dist/MultiRowLineRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/index.ts"],"names":[],"mappings":";;;;;AACA,mFAAoD;AACpD,kFAAyD;AACzD,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,8BAAoB,CAAC;QACvB,IAAI,EAAE,sBAAsB;QAC5B,cAAc,EAAd,8BAAc;QACd,YAAY,EAAZ,sBAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js

@@ -0,0 +1,68 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const util_1 = require("../util");
+const drawxy_1 = require("../drawxy");
+const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
+    // @ts-ignore
+    async draw(ctx, props) {
+        const { bpPerPx, sources, regions, features } = props;
+        const [region] = regions;
+        const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
+        const height = props.height / Object.keys(groups).length;
+        const width = (region.end - region.start) / bpPerPx;
+        const Color = await Promise.resolve().then(() => __importStar(require('color'))).then(f => f.default);
+        let feats = [];
+        ctx.save();
+        sources.forEach(source => {
+            const features = groups[source.name];
+            if (!features) {
+                return;
+            }
+            const { reducedFeatures } = (0, drawxy_1.drawXY)(ctx, {
+                ...props,
+                features,
+                height,
+                colorCallback: () => source.color || 'blue',
+                Color,
+            });
+            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+            ctx.beginPath();
+            ctx.moveTo(0, height);
+            ctx.lineTo(width, height);
+            ctx.stroke();
+            ctx.translate(0, height);
+            feats = feats.concat(reducedFeatures);
+        });
+        ctx.restore();
+        return { reducedFeatures: feats };
+    }
+}
+exports.default = MultiXYPlotRenderer;
+//# sourceMappingURL=MultiRowXYPlotRenderer.js.map

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiRowXYPlotRenderer.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kCAAiC;AACjC,sCAAkC;AAElC,+EAE8B;AAE9B,MAAqB,mBAAoB,SAAQ,4BAAkB;IACjE,aAAa;IACb,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,kDAAO,OAAO,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QACxD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,eAAM,EAAC,GAAG,EAAE;gBACtC,GAAG,KAAK;gBACR,QAAQ;gBACR,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;gBAC3C,KAAK;aACN,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;QACvC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AAlCD,sCAkCC"}

package/dist/MultiRowXYPlotRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiRowXYPlotRenderer/configSchema.js

@@ -0,0 +1,31 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const mobx_state_tree_1 = require("mobx-state-tree");
+const configuration_1 = require("@jbrowse/core/configuration");
+const configSchema_1 = __importDefault(require("../configSchema"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowXYPlotRenderer', {
+    filled: {
+        type: 'boolean',
+        defaultValue: true,
+    },
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'whiskers',
+    },
+    minSize: {
+        type: 'number',
+        defaultValue: 0,
+    },
+}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiRowXYPlotRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,qDAAuC;AAEvC,+DAAiE;AACjE,mEAA0C;AAE1C,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,wBAAwB,EACxB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,UAAU;KACzB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/MultiRowXYPlotRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiRowXYPlotRenderer/index.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+const MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
+const configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiRowXYPlotRenderer_1.default({
+        name: 'MultiRowXYPlotRenderer',
+        ReactComponent: MultiWiggleRendering_1.default,
+        configSchema: configSchema_1.default,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/dist/MultiRowXYPlotRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/index.ts"],"names":[],"mappings":";;;;;AACA,mFAAoD;AACpD,sFAA6D;AAC7D,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,gCAAsB,CAAC;QACzB,IAAI,EAAE,wBAAwB;QAC9B,cAAc,EAAd,8BAAc;QACd,YAAY,EAAZ,sBAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts

@@ -0,0 +1,29 @@
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util';
+interface WiggleOptions extends BaseOptions {
+    resolution?: number;
+}
+interface AdapterEntry {
+    dataAdapter: BaseFeatureDataAdapter;
+    [key: string]: unknown;
+}
+export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
+    static capabilities: string[];
+    getAdapters(): Promise<AdapterEntry[]>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    getGlobalStats(opts?: BaseOptions): Promise<{
+        scoreMin: number;
+        scoreMax: number;
+    }>;
+    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
+    estimateRegionsStats(_regions: Region[]): Promise<{
+        featureDensity: number;
+    }>;
+    getSources(): Promise<{
+        name: unknown;
+        __name: unknown;
+    }[]>;
+    freeResources(): void;
+}
+export {};

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js

@@ -0,0 +1,92 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
+const rxjs_1 = require("@jbrowse/core/util/rxjs");
+const util_1 = require("@jbrowse/core/util");
+const rxjs_2 = require("rxjs");
+const operators_1 = require("rxjs/operators");
+function getFilename(uri) {
+    const filename = uri.slice(uri.lastIndexOf('/') + 1);
+    return filename.slice(0, filename.lastIndexOf('.'));
+}
+class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
+    async getAdapters() {
+        const getSubAdapter = this.getSubAdapter;
+        if (!getSubAdapter) {
+            throw new Error('no getSubAdapter available');
+        }
+        let subConfs = this.getConf('subadapters');
+        if (!(subConfs === null || subConfs === void 0 ? void 0 : subConfs.length)) {
+            const entries = this.getConf('bigWigs');
+            subConfs = entries.map(entry => ({
+                type: 'BigWigAdapter',
+                source: getFilename(entry),
+                bigWigLocation: {
+                    uri: entry,
+                },
+            }));
+        }
+        return Promise.all(
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        subConfs.map(async (conf) => {
+            const dataAdapter = (await getSubAdapter(conf))
+                .dataAdapter;
+            return {
+                source: conf.name || dataAdapter.id,
+                ...conf,
+                dataAdapter,
+            };
+        }));
+    }
+    // note: can't really have dis-agreeing refNames
+    async getRefNames(opts) {
+        const adapters = await this.getAdapters();
+        const allNames = await Promise.all(adapters.map(a => a.dataAdapter.getRefNames(opts)));
+        return [...new Set(allNames.flat())];
+    }
+    async getGlobalStats(opts) {
+        const adapters = await this.getAdapters();
+        const stats = (await Promise.all(
+        // @ts-ignore
+        adapters.map(adp => { var _a, _b; return (_b = (_a = adp.dataAdapter).getGlobalStats) === null || _b === void 0 ? void 0 : _b.call(_a, opts); }))).filter(f => !!f);
+        const scoreMin = Math.min(...stats.map(s => s.scoreMin));
+        const scoreMax = Math.max(...stats.map(s => s.scoreMax));
+        return { scoreMin, scoreMax };
+    }
+    getFeatures(region, opts = {}) {
+        return (0, rxjs_1.ObservableCreate)(async (observer) => {
+            const adapters = await this.getAdapters();
+            (0, rxjs_2.merge)(...adapters.map(adp => adp.dataAdapter.getFeatures(region, opts).pipe((0, operators_1.map)(p => 
+            // add source field if it does not exist
+            p.get('source')
+                ? p
+                : new util_1.SimpleFeature({
+                    ...p.toJSON(),
+                    uniqueId: adp.source + '-' + p.id(),
+                    source: adp.source,
+                }))))).subscribe(observer);
+        }, opts.signal);
+    }
+    // always render bigwig instead of calculating a feature density for it
+    async estimateRegionsStats(_regions) {
+        return { featureDensity: 0 };
+    }
+    // in another adapter type, this could be dynamic depending on region or
+    // something, but it is static for this particular multi-wiggle adapter type
+    async getSources() {
+        const adapters = await this.getAdapters();
+        return adapters.map(({ dataAdapter, source, name, ...rest }) => ({
+            name: source,
+            __name: name,
+            ...rest,
+        }));
+    }
+    freeResources() { }
+}
+exports.default = MultiWiggleAdapter;
+MultiWiggleAdapter.capabilities = [
+    'hasResolution',
+    'hasLocalStats',
+    'hasGlobalStats',
+];
+//# sourceMappingURL=MultiWiggleAdapter.js.map

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map

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package/dist/MultiWiggleAdapter/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/MultiWiggleAdapter/configSchema.js

@@ -0,0 +1,14 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+exports.default = (0, configuration_1.ConfigurationSchema)('MultiWiggleAdapter', {
+    subadapters: {
+        type: 'frozen',
+        defaultValue: [],
+    },
+    bigWigs: {
+        type: 'frozen',
+        defaultValue: [],
+    },
+}, { explicitlyTyped: true });
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiWiggleAdapter/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,oBAAoB,EACpB;IACE,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/dist/MultiWiggleAdapter/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiWiggleAdapter/index.js

@@ -0,0 +1,43 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const configSchema_1 = __importDefault(require("./configSchema"));
+const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+exports.default = (pluginManager) => {
+    pluginManager.addAdapterType(() => new AdapterType_1.default({
+        name: 'MultiWiggleAdapter',
+        configSchema: configSchema_1.default,
+        adapterCapabilities: [
+            'hasResolution',
+            'hasLocalStats',
+            'hasGlobalStats',
+        ],
+        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MultiWiggleAdapter'))).then(r => r.default),
+    }));
+};
+//# sourceMappingURL=index.js.map

package/dist/MultiWiggleAdapter/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,kGAAyE;AAGzE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,sBAAsB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts

@@ -0,0 +1,5 @@
+/// <reference types="react" />
+import { AddTrackModel } from '@jbrowse/plugin-data-management';
+export default function MultiWiggleWidget({ model }: {
+    model: AddTrackModel;
+}): JSX.Element;

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js

@@ -0,0 +1,113 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    textbox: {
+        width: '100%',
+    },
+    paper: {
+        margin: theme.spacing(),
+        padding: theme.spacing(),
+    },
+    submit: {
+        marginTop: 25,
+        marginBottom: 100,
+        display: 'block',
+    },
+}));
+function MultiWiggleWidget({ model }) {
+    const { classes } = useStyles();
+    const [val, setVal] = (0, react_1.useState)('');
+    const [trackName, setTrackName] = (0, react_1.useState)('MultiWiggle ' + Date.now());
+    return (react_1.default.createElement(material_1.Paper, { className: classes.paper },
+        react_1.default.createElement("ul", null,
+            react_1.default.createElement("li", null, "Enter list of URLs for bigwig files in the textbox"),
+            react_1.default.createElement("li", null, "Or, use the button below the text box to select files from your computer")),
+        react_1.default.createElement(material_1.TextField, { multiline: true, rows: 10, value: val, onChange: event => setVal(event.target.value), placeholder: 'Paste list of URLs here, or use file selector below', variant: "outlined", className: classes.textbox }),
+        react_1.default.createElement(material_1.Button, { variant: "outlined", component: "label" },
+            "Choose Files from your computer",
+            react_1.default.createElement("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
+                    const res = Array.from((target === null || target === void 0 ? void 0 : target.files) || []).map(file => ({
+                        type: 'BigWigAdapter',
+                        bigWigLocation: util_1.isElectron
+                            ? {
+                                localPath: file.path,
+                                locationType: 'LocalPathLocation',
+                            }
+                            : (0, tracks_1.storeBlobLocation)({ blob: file }),
+                        source: file.name,
+                    }));
+                    setVal(JSON.stringify(res, null, 2));
+                } })),
+        react_1.default.createElement(material_1.TextField, { value: trackName, onChange: event => setTrackName(event.target.value), helperText: "Track name" }),
+        react_1.default.createElement(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
+                var _a;
+                const session = (0, util_1.getSession)(model);
+                const trackId = [
+                    `${trackName.toLowerCase().replace(/ /g, '_')}-${Date.now()}`,
+                    `${session.adminMode ? '' : '-sessionTrack'}`,
+                ].join('');
+                // allow list of bigwigs in JSON format or line-by-line
+                let bigWigs;
+                try {
+                    bigWigs = JSON.parse(val);
+                }
+                catch (e) {
+                    bigWigs = val.split('\n');
+                }
+                const obj = typeof bigWigs[0] === 'string'
+                    ? { bigWigs }
+                    : { subadapters: bigWigs };
+                session.addTrackConf({
+                    trackId,
+                    type: 'MultiQuantitativeTrack',
+                    name: trackName,
+                    assemblyNames: [model.assembly],
+                    adapter: {
+                        type: 'MultiWiggleAdapter',
+                        ...obj,
+                    },
+                });
+                (_a = model.view) === null || _a === void 0 ? void 0 : _a.showTrack(trackId);
+                model.clearData();
+                session.hideWidget(model);
+            } }, "Submit"),
+        react_1.default.createElement("p", null, "Additional notes: "),
+        react_1.default.createElement("ul", null,
+            react_1.default.createElement("li", null,
+                "The list of bigwig files in the text box can be a list of URLs, or a list of elements like",
+                ' ',
+                react_1.default.createElement("code", null, `[{"type":"BigWigAdapter","bigWigLocation":{"uri":"http://host/file.bw"}, "color":"green","source":"name for subtrack"}]`),
+                ' ',
+                "to apply e.g. the color attribute to the view"),
+            react_1.default.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
+}
+exports.default = MultiWiggleWidget;
+//# sourceMappingURL=AddTrackWorkflow.js.map

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map

@@ -0,0 +1 @@
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package/dist/MultiWiggleAddTrackWidget/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pm: PluginManager) => void;
+export default _default;

package/dist/MultiWiggleAddTrackWidget/index.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const mobx_state_tree_1 = require("mobx-state-tree");
+// locals
+const AddTrackWorkflow_1 = __importDefault(require("./AddTrackWorkflow"));
+exports.default = (pm) => {
+    pm.addAddTrackWorkflowType(() => new pluggableElementTypes_1.AddTrackWorkflowType({
+        name: 'Multi-wiggle track',
+        ReactComponent: AddTrackWorkflow_1.default,
+        stateModel: mobx_state_tree_1.types.model({}),
+    }));
+};
+//# sourceMappingURL=index.js.map

package/dist/MultiWiggleAddTrackWidget/index.js.map

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