@jbrowse/plugin-wiggle 2.0.0 → 2.1.2

package/dist/LinearWiggleDisplay/models/model.js.map

@@ -1 +1 @@
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package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/dist/MultiDensityRenderer/MultiDensityRenderer.js

@@ -0,0 +1,42 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const util_1 = require("../util");
+const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+const drawxy_1 = require("../drawxy");
+class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
+    // @ts-ignore
+    async draw(ctx, props) {
+        const { bpPerPx, sources, regions, features } = props;
+        const [region] = regions;
+        const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
+        const height = props.height / Object.keys(groups).length;
+        const width = (region.end - region.start) / bpPerPx;
+        let feats = [];
+        ctx.save();
+        sources.forEach(source => {
+            const features = groups[source.name];
+            if (!features) {
+                return;
+            }
+            const { reducedFeatures } = (0, drawxy_1.drawDensity)(ctx, {
+                ...props,
+                features,
+                height,
+            });
+            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+            ctx.beginPath();
+            ctx.moveTo(0, height);
+            ctx.lineTo(width, height);
+            ctx.stroke();
+            ctx.translate(0, height);
+            feats = feats.concat(reducedFeatures);
+        });
+        ctx.restore();
+        return { reducedFeatures: feats };
+    }
+}
+exports.default = MultiXYPlotRenderer;
+//# sourceMappingURL=MultiDensityRenderer.js.map

package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiDensityRenderer.js","sourceRoot":"","sources":["../../src/MultiDensityRenderer/MultiDensityRenderer.ts"],"names":[],"mappings":";;;;;AACA,kCAAiC;AACjC,+EAE8B;AAC9B,sCAAuC;AAEvC,MAAqB,mBAAoB,SAAQ,4BAAkB;IACjE,aAAa;IACb,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,oBAAW,EAAC,GAAG,EAAE;gBAC3C,GAAG,KAAK;gBACR,QAAQ;gBACR,MAAM;aACP,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;QACvC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AA/BD,sCA+BC"}

package/dist/MultiDensityRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiDensityRenderer/configSchema.js

@@ -0,0 +1,10 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+const configSchema_1 = __importDefault(require("../configSchema"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('MultiDensityRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiDensityRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiDensityRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,+DAAiE;AACjE,mEAA0C;AAE1C,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,sBAAsB,EACtB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/MultiDensityRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiDensityRenderer/index.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const configSchema_1 = __importDefault(require("./configSchema"));
+const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+const MultiDensityRenderer_1 = __importDefault(require("./MultiDensityRenderer"));
+exports.default = (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiDensityRenderer_1.default({
+        name: 'MultiDensityRenderer',
+        ReactComponent: MultiWiggleRendering_1.default,
+        configSchema: configSchema_1.default,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/dist/MultiDensityRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiDensityRenderer/index.ts"],"names":[],"mappings":";;;;;AACA,kEAAyC;AACzC,mFAAoD;AACpD,kFAAyD;AAEzD,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,8BAAoB,CAAC;QACvB,IAAI,EAAE,sBAAsB;QAC5B,cAAc,EAAd,8BAAc;QACd,YAAY,EAAZ,sBAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/MultiLineRenderer/MultiLineRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiLineRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/dist/MultiLineRenderer/MultiLineRenderer.js

@@ -0,0 +1,31 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const drawxy_1 = require("../drawxy");
+const util_1 = require("../util");
+const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+class MultiLineRenderer extends WiggleBaseRenderer_1.default {
+    // @ts-ignore
+    async draw(ctx, props) {
+        const { sources, features } = props;
+        const groups = (0, util_1.groupBy)([...features.values()], f => f.get('source'));
+        let feats = [];
+        sources.forEach(source => {
+            const features = groups[source.name];
+            if (!features) {
+                return;
+            }
+            const { reducedFeatures } = (0, drawxy_1.drawLine)(ctx, {
+                ...props,
+                features,
+                colorCallback: () => source.color || 'blue',
+            });
+            feats = feats.concat(reducedFeatures);
+        });
+        return { reducedFeatures: feats };
+    }
+}
+exports.default = MultiLineRenderer;
+//# sourceMappingURL=MultiLineRenderer.js.map

package/dist/MultiLineRenderer/MultiLineRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiLineRenderer.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/MultiLineRenderer.ts"],"names":[],"mappings":";;;;;AACA,sCAAoC;AACpC,kCAAiC;AAEjC,+EAE8B;AAE9B,MAAqB,iBAAkB,SAAQ,4BAAkB;IAC/D,aAAa;IACb,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACnC,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ;gBACR,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;QACvC,CAAC,CAAC,CAAA;QACF,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AApBD,oCAoBC"}

package/dist/MultiLineRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiLineRenderer/configSchema.js

@@ -0,0 +1,23 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const configSchema_1 = __importDefault(require("../configSchema"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('MultiLineRenderer', {
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'avg',
+    },
+}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiLineRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,+DAAiE;AACjE,qDAAuC;AACvC,mEAA0C;AAE1C,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,mBAAmB,EACnB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IAED,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AACD,kBAAe,YAAY,CAAA"}

package/dist/MultiLineRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiLineRenderer/index.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+const MultiLineRenderer_1 = __importDefault(require("./MultiLineRenderer"));
+const configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (pluginManager) => {
+    pluginManager.addRendererType(() => new MultiLineRenderer_1.default({
+        name: 'MultiLineRenderer',
+        ReactComponent: MultiWiggleRendering_1.default,
+        configSchema: configSchema_1.default,
+        pluginManager,
+    }));
+};
+//# sourceMappingURL=index.js.map

package/dist/MultiLineRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/index.ts"],"names":[],"mappings":";;;;;AAEA,mFAAoD;AACpD,4EAAmD;AACnD,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,2BAAiB,CAAC;QACpB,IAAI,EAAE,mBAAmB;QACzB,cAAc,EAAd,8BAAc;QACd,YAAY,EAAZ,sBAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -0,0 +1,10 @@
+/// <reference types="react" />
+import { Source } from '../../util';
+export default function SetColorDialog({ model, handleClose, }: {
+    model: {
+        sources: Source[];
+        setLayout: (s: Source[]) => void;
+        clearLayout: () => void;
+    };
+    handleClose: () => void;
+}): JSX.Element;

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js

@@ -0,0 +1,191 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
+const x_data_grid_1 = require("@mui/x-data-grid");
+const react_draggable_1 = __importDefault(require("react-draggable"));
+const clone_1 = __importDefault(require("clone"));
+// locals
+const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
+const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+const util_2 = require("./util");
+// icons
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
+const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
+const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
+const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+    content: {
+        minWidth: 800,
+    },
+}));
+// draggable dialog demo https://mui.com/material-ui/react-dialog/#draggable-dialog
+function PaperComponent(props) {
+    return (react_1.default.createElement(react_draggable_1.default, { handle: "#draggable-dialog-title", cancel: '[class*="MuiDialogContent-root"]' },
+        react_1.default.createElement(material_1.Paper, { ...props })));
+}
+function SetColorDialog({ model, handleClose, }) {
+    const { classes } = useStyles();
+    const { sources } = model;
+    const [currLayout, setCurrLayout] = (0, react_1.useState)((0, clone_1.default)(sources || []));
+    const [showTipsTmp, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', 'true');
+    const showTips = showTipsTmp === 'true';
+    return (react_1.default.createElement(material_1.Dialog, { PaperComponent: PaperComponent, open: true, onClose: handleClose, maxWidth: "xl", "aria-labelledby": "draggable-dialog-title" // this area is important for the draggable functionality
+     },
+        react_1.default.createElement(material_1.DialogTitle, { style: { cursor: 'move' }, id: "draggable-dialog-title" },
+            "Multi-wiggle color/arrangement editor",
+            ' ',
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: handleClose },
+                react_1.default.createElement(Close_1.default, null))),
+        react_1.default.createElement(material_1.DialogContent, { className: classes.content },
+            react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => setShowTips(showTips ? 'false' : 'true') }, showTips ? 'Hide tips' : 'Show tips'),
+            react_1.default.createElement("br", null),
+            showTips ? (react_1.default.createElement(react_1.default.Fragment, null,
+                "Helpful tips",
+                react_1.default.createElement("ul", null,
+                    react_1.default.createElement("li", null, "You can select rows in the table with the checkboxes"),
+                    react_1.default.createElement("li", null, "Multi-select is enabled with shift-click and control-click"),
+                    react_1.default.createElement("li", null, "The \"Move selected items up/down\" can re-arrange subtracks"),
+                    react_1.default.createElement("li", null, "Sorting the data grid itself can also re-arrange subtracks"),
+                    react_1.default.createElement("li", null, "Changes are applied when you hit Submit"),
+                    react_1.default.createElement("li", null, "You can click and drag the dialog box to move it on the screen"),
+                    react_1.default.createElement("li", null, "Columns in the table can be hidden using a vertical '...' menu on the right side of each column")))) : null,
+            react_1.default.createElement(SourcesGrid, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
+                    model.clearLayout();
+                    setCurrLayout(model.sources);
+                } }, "Clear custom settings"),
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
+                    handleClose();
+                    setCurrLayout([...model.sources]);
+                } }, "Cancel"),
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
+                    model.setLayout(currLayout);
+                    handleClose();
+                } }, "Submit"))));
+}
+exports.default = SetColorDialog;
+function SourcesGrid({ rows, onChange, showTips, }) {
+    const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
+    const [selected, setSelected] = (0, react_1.useState)([]);
+    // @ts-ignore
+    const { name: _name, color: _color, baseUri: _baseUri, ...rest } = rows[0];
+    // similar to BaseFeatureDetail data-grid for auto-measuring columns
+    const columns = [
+        {
+            field: 'color',
+            headerName: 'Color',
+            renderCell: (params) => {
+                const { value, id } = params;
+                return (react_1.default.createElement(ColorPicker_1.default, { color: value || 'blue', onChange: c => {
+                        const elt = rows.find(f => f.name === id);
+                        if (elt) {
+                            elt.color = c;
+                        }
+                        onChange([...rows]);
+                    } }));
+            },
+        },
+        {
+            field: 'name',
+            sortingOrder: [null],
+            headerName: 'Name',
+            width: (0, util_1.measureGridWidth)(rows.map(r => r.name)),
+        },
+        ...Object.keys(rest).map(val => ({
+            field: val,
+            sortingOrder: [null],
+            renderCell: (params) => {
+                const { value } = params;
+                return (0, util_1.isUriLocation)(value) ? react_1.default.createElement(BaseFeatureDetail_1.UriLink, { value: value }) : (0, util_1.getStr)(value);
+            },
+            // @ts-ignore
+            width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
+        })),
+    ];
+    // this helps keep track of the selection, even though it is not used
+    // anywhere except inside the picker
+    const [widgetColor, setWidgetColor] = (0, react_1.useState)('blue');
+    const [currSort, setCurrSort] = (0, react_1.useState)({ idx: 0, field: null });
+    return (react_1.default.createElement("div", null,
+        react_1.default.createElement(material_1.Button, { disabled: !selected.length, onClick: event => setAnchorEl(event.currentTarget) }, "Change color of selected items"),
+        react_1.default.createElement(material_1.Button, { onClick: () => onChange((0, util_2.moveUp)([...rows], selected)), disabled: !selected.length },
+            react_1.default.createElement(KeyboardArrowUp_1.default, null),
+            showTips ? 'Move selected items up' : null),
+        react_1.default.createElement(material_1.Button, { onClick: () => onChange((0, util_2.moveDown)([...rows], selected)), disabled: !selected.length },
+            react_1.default.createElement(KeyboardArrowDown_1.default, null),
+            showTips ? 'Move selected items down' : null),
+        react_1.default.createElement(material_1.Button, { onClick: () => onChange((0, util_2.moveUp)([...rows], selected, rows.length)), disabled: !selected.length },
+            react_1.default.createElement(KeyboardDoubleArrowUp_1.default, null),
+            showTips ? 'Move selected items to top' : null),
+        react_1.default.createElement(material_1.Button, { onClick: () => onChange((0, util_2.moveDown)([...rows], selected, rows.length)), disabled: !selected.length },
+            react_1.default.createElement(KeyboardDoubleArrowDown_1.default, null),
+            showTips ? 'Move selected items to bottom' : null),
+        react_1.default.createElement(ColorPicker_1.ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: c => {
+                setWidgetColor(c);
+                selected.forEach(id => {
+                    const elt = rows.find(f => f.name === id);
+                    if (elt) {
+                        elt.color = c;
+                    }
+                });
+                onChange([...rows]);
+            }, onClose: () => setAnchorEl(null) }),
+        react_1.default.createElement("div", { style: { height: 400, width: '100%' } },
+            react_1.default.createElement(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, disableSelectionOnClick: true, onSelectionModelChange: arg => setSelected(arg), rows: rows, rowHeight: 25, headerHeight: 33, columns: columns, sortModel: [
+                /* we control the sort as a controlled component using onSortModelChange */
+                ], onSortModelChange: args => {
+                    const sort = args[0];
+                    const idx = (currSort.idx + 1) % 2;
+                    const field = (sort === null || sort === void 0 ? void 0 : sort.field) || currSort.field;
+                    setCurrSort({ idx, field });
+                    onChange(field
+                        ? [...rows].sort((a, b) => {
+                            // @ts-ignore
+                            const aa = (0, util_1.getStr)(a[field]);
+                            // @ts-ignore
+                            const bb = (0, util_1.getStr)(b[field]);
+                            return idx === 1
+                                ? aa.localeCompare(bb)
+                                : bb.localeCompare(aa);
+                        })
+                        : rows);
+                } }))));
+}
+//# sourceMappingURL=SetColorDialog.js.map

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map

@@ -0,0 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts

@@ -0,0 +1,11 @@
+/// <reference types="react" />
+export default function SetMinMaxDlg(props: {
+    model: {
+        minScore: number;
+        maxScore: number;
+        scaleType: string;
+        setMinScore: Function;
+        setMaxScore: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;

package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js

@@ -0,0 +1,75 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    root: {},
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}));
+function SetMinMaxDlg(props) {
+    const { classes } = useStyles();
+    const { model, handleClose } = props;
+    const { minScore, maxScore, scaleType } = model;
+    const [min, setMin] = (0, react_1.useState)(`${minScore !== Number.MIN_VALUE ? minScore : ''}`);
+    const [max, setMax] = (0, react_1.useState)(`${maxScore !== Number.MAX_VALUE ? maxScore : ''}`);
+    const ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
+        ? +max > +min
+        : true;
+    const logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
+    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose },
+        react_1.default.createElement(material_1.DialogTitle, null,
+            "Set min/max score for track",
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: handleClose },
+                react_1.default.createElement(Close_1.default, null))),
+        react_1.default.createElement(material_1.DialogContent, { style: { overflowX: 'hidden' } },
+            react_1.default.createElement("div", { className: classes.root },
+                react_1.default.createElement(material_1.Typography, null, "Enter min/max score: "),
+                !ok ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
+                !logOk ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
+                react_1.default.createElement(material_1.TextField, { value: min, onChange: event => {
+                        setMin(event.target.value);
+                    }, placeholder: "Enter min score" }),
+                react_1.default.createElement(material_1.TextField, { value: max, onChange: event => {
+                        setMax(event.target.value);
+                    }, placeholder: "Enter max score" }),
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: () => {
+                        model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
+                        model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
+                        handleClose();
+                    } }, "Submit")))));
+}
+exports.default = SetMinMaxDlg;
+//# sourceMappingURL=SetMinMaxDialog.js.map

package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map

@@ -0,0 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts

@@ -0,0 +1,25 @@
+import React from 'react';
+import { Feature } from '@jbrowse/core/util';
+import { Source } from '../../util';
+import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
+declare const TooltipContents: React.ForwardRefExoticComponent<{
+    model: {
+        sources: Source[];
+    };
+    feature: Feature;
+} & React.RefAttributes<HTMLDivElement>>;
+declare type Coord = [number, number];
+declare const WiggleTooltip: (props: {
+    model: {
+        featureUnderMouse: Feature;
+        sources: Source[];
+        rowHeight: number;
+    };
+    height: number;
+    offsetMouseCoord: Coord;
+    clientMouseCoord: Coord;
+    clientRect?: DOMRect;
+    TooltipContents?: TooltipContentsComponent;
+}) => JSX.Element;
+export default WiggleTooltip;
+export { Tooltip };