@jbrowse/plugin-wiggle 2.0.0 → 2.1.2

package/dist/BigWigAdapter/BigWigAdapter.d.ts

@@ -1,17 +1,18 @@
+import { BigWig } from '@gmod/bbi';
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import { Feature } from '@jbrowse/core/util';
 interface WiggleOptions extends BaseOptions {
     resolution?: number;
 }
 export default class BigWigAdapter extends BaseFeatureDataAdapter {
-    private bigwig;
+    private setupP?;
     static capabilities: string[];
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private setup;
+    private setupPre;
+    setup(opts?: BaseOptions): Promise<{
+        bigwig: BigWig;
+        header: any;
+    }>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;
     refIdToName(refId: number): Promise<any>;
     getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;

package/dist/BigWigAdapter/BigWigAdapter.js

@@ -1,180 +1,84 @@
 "use strict";
-var __extends = (this && this.__extends) || (function () {
-    var extendStatics = function (d, b) {
-        extendStatics = Object.setPrototypeOf ||
-            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
-            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
-        return extendStatics(d, b);
-    };
-    return function (d, b) {
-        if (typeof b !== "function" && b !== null)
-            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
-        extendStatics(d, b);
-        function __() { this.constructor = d; }
-        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
-    };
-})();
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-var bbi_1 = require("@gmod/bbi");
-var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-var io_1 = require("@jbrowse/core/util/io");
-var util_1 = require("@jbrowse/core/util");
-var rxjs_1 = require("@jbrowse/core/util/rxjs");
-var simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeature"));
-var operators_1 = require("rxjs/operators");
-var configuration_1 = require("@jbrowse/core/configuration");
-var stats_1 = require("@jbrowse/core/util/stats");
-var BigWigAdapter = /** @class */ (function (_super) {
-    __extends(BigWigAdapter, _super);
-    function BigWigAdapter(config, getSubAdapter, pluginManager) {
-        var _this = _super.call(this, config, getSubAdapter, pluginManager) || this;
-        _this.bigwig = new bbi_1.BigWig({
-            filehandle: (0, io_1.openLocation)((0, configuration_1.readConfObject)(config, 'bigWigLocation'), _this.pluginManager),
+const bbi_1 = require("@gmod/bbi");
+const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
+const io_1 = require("@jbrowse/core/util/io");
+const util_1 = require("@jbrowse/core/util");
+const rxjs_1 = require("@jbrowse/core/util/rxjs");
+const stats_1 = require("@jbrowse/core/util/stats");
+class BigWigAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
+    async setupPre(opts) {
+        const { statusCallback = () => { } } = opts || {};
+        const bigwig = new bbi_1.BigWig({
+            filehandle: (0, io_1.openLocation)(this.getConf('bigWigLocation'), this.pluginManager),
         });
-        return _this;
+        const header = await (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, () => bigwig.getHeader(opts));
+        return { bigwig, header };
     }
-    BigWigAdapter.prototype.setup = function (opts) {
-        return __awaiter(this, void 0, void 0, function () {
-            var _a, statusCallback;
-            var _this = this;
-            return __generator(this, function (_b) {
-                _a = (opts || {}).statusCallback, statusCallback = _a === void 0 ? function () { } : _a;
-                return [2 /*return*/, (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, function () {
-                        return _this.bigwig.getHeader(opts);
-                    })];
-            });
-        });
-    };
-    BigWigAdapter.prototype.getRefNames = function (opts) {
-        return __awaiter(this, void 0, void 0, function () {
-            var refsByName;
-            return __generator(this, function (_a) {
-                switch (_a.label) {
-                    case 0: return [4 /*yield*/, this.setup(opts)];
-                    case 1:
-                        refsByName = (_a.sent()).refsByName;
-                        return [2 /*return*/, Object.keys(refsByName)];
-                }
+    async setup(opts) {
+        if (!this.setupP) {
+            this.setupP = this.setupPre(opts).catch(e => {
+                this.setupP = undefined;
+                throw e;
             });
-        });
-    };
-    BigWigAdapter.prototype.refIdToName = function (refId) {
+        }
+        return this.setupP;
+    }
+    async getRefNames(opts) {
+        const { header: { refsByName }, } = await this.setup(opts);
+        return Object.keys(refsByName);
+    }
+    async refIdToName(refId) {
         var _a;
-        return __awaiter(this, void 0, void 0, function () {
-            var refsByNumber;
-            return __generator(this, function (_b) {
-                switch (_b.label) {
-                    case 0: return [4 /*yield*/, this.setup()];
-                    case 1:
-                        refsByNumber = (_b.sent()).refsByNumber;
-                        return [2 /*return*/, (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name];
-                }
-            });
-        });
-    };
-    BigWigAdapter.prototype.getGlobalStats = function (opts) {
-        return __awaiter(this, void 0, void 0, function () {
-            var totalSummary;
-            return __generator(this, function (_a) {
-                switch (_a.label) {
-                    case 0: return [4 /*yield*/, this.setup(opts)];
-                    case 1:
-                        totalSummary = (_a.sent()).totalSummary;
-                        return [2 /*return*/, (0, stats_1.rectifyStats)(totalSummary)];
-                }
+        const { header: { refsByNumber }, } = await this.setup();
+        return (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name;
+    }
+    async getGlobalStats(opts) {
+        const { header: { totalSummary }, } = await this.setup(opts);
+        return (0, stats_1.rectifyStats)(totalSummary);
+    }
+    getFeatures(region, opts = {}) {
+        const { refName, start, end } = region;
+        const { bpPerPx = 0, signal, resolution = 1, statusCallback = () => { }, } = opts;
+        return (0, rxjs_1.ObservableCreate)(async (observer) => {
+            statusCallback('Downloading bigwig data');
+            const source = this.getConf('source');
+            const { bigwig } = await this.setup(opts);
+            const feats = await bigwig.getFeatures(refName, start, end, {
+                ...opts,
+                basesPerSpan: bpPerPx / resolution,
             });
-        });
-    };
-    BigWigAdapter.prototype.getFeatures = function (region, opts) {
-        var _this = this;
-        if (opts === void 0) { opts = {}; }
-        var refName = region.refName, start = region.start, end = region.end;
-        var _a = opts.bpPerPx, bpPerPx = _a === void 0 ? 0 : _a, signal = opts.signal, _b = opts.resolution, resolution = _b === void 0 ? 1 : _b, _c = opts.statusCallback, statusCallback = _c === void 0 ? function () { } : _c;
-        return (0, rxjs_1.ObservableCreate)(function (observer) { return __awaiter(_this, void 0, void 0, function () {
-            var ob;
-            return __generator(this, function (_a) {
-                switch (_a.label) {
-                    case 0:
-                        statusCallback('Downloading bigwig data');
-                        return [4 /*yield*/, this.bigwig.getFeatureStream(refName, start, end, __assign(__assign({}, opts), { basesPerSpan: bpPerPx / resolution }))];
-                    case 1:
-                        ob = _a.sent();
-                        ob.pipe((0, operators_1.mergeAll)(), (0, operators_1.map)(function (record) {
-                            return new simpleFeature_1.default({
-                                id: "".concat(refName, ":").concat(record.start, "-").concat(record.end),
-                                data: __assign(__assign({}, record), { refName: refName }),
-                            });
-                        })).subscribe(observer);
-                        return [2 /*return*/];
+            for (let i = 0; i < feats.length; i++) {
+                const data = feats[i];
+                if (source) {
+                    // @ts-ignore
+                    data.source = source;
                 }
-            });
-        }); }, signal);
-    };
+                const uniqueId = `${source}:${region.refName}:${data.start}-${data.end}`;
+                // @ts-ignore
+                data.refName = refName;
+                data.uniqueId = uniqueId;
+                observer.next({
+                    // @ts-ignore
+                    get: (str) => data[str],
+                    id: () => uniqueId,
+                    // @ts-ignore
+                    toJSON: () => data,
+                });
+            }
+            observer.complete();
+        }, signal);
+    }
     // always render bigwig instead of calculating a feature density for it
-    BigWigAdapter.prototype.estimateRegionsStats = function (_regions) {
-        return __awaiter(this, void 0, void 0, function () {
-            return __generator(this, function (_a) {
-                return [2 /*return*/, { featureDensity: 0 }];
-            });
-        });
-    };
-    BigWigAdapter.prototype.freeResources = function () { };
-    BigWigAdapter.capabilities = [
-        'hasResolution',
-        'hasLocalStats',
-        'hasGlobalStats',
-    ];
-    return BigWigAdapter;
-}(BaseAdapter_1.BaseFeatureDataAdapter));
+    async estimateRegionsStats(_regions) {
+        return { featureDensity: 0 };
+    }
+    freeResources() { }
+}
 exports.default = BigWigAdapter;
+BigWigAdapter.capabilities = [
+    'hasResolution',
+    'hasLocalStats',
+    'hasGlobalStats',
+];
 //# sourceMappingURL=BigWigAdapter.js.map

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package/dist/BigWigAdapter/configSchema.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-var configuration_1 = require("@jbrowse/core/configuration");
+const configuration_1 = require("@jbrowse/core/configuration");
 exports.default = (0, configuration_1.ConfigurationSchema)('BigWigAdapter', {
     bigWigLocation: {
         type: 'fileLocation',
@@ -9,5 +9,10 @@ exports.default = (0, configuration_1.ConfigurationSchema)('BigWigAdapter', {
             locationType: 'UriLocation',
         },
     },
+    source: {
+        type: 'string',
+        defaultValue: '',
+        description: 'Used for multiwiggle',
+    },
 }, { explicitlyTyped: true });
 //# sourceMappingURL=configSchema.js.map

package/dist/BigWigAdapter/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/dist/BigWigAdapter/index.d.ts

@@ -1 +1,3 @@
-export { default as configSchema } from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/BigWigAdapter/index.js

@@ -1,9 +1,43 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = void 0;
-var configSchema_1 = require("./configSchema");
-Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
+const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+const configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (pluginManager) => {
+    pluginManager.addAdapterType(() => new AdapterType_1.default({
+        name: 'BigWigAdapter',
+        configSchema: configSchema_1.default,
+        adapterCapabilities: [
+            'hasResolution',
+            'hasLocalStats',
+            'hasGlobalStats',
+        ],
+        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigWigAdapter'))).then(r => r.default),
+    }));
+};
 //# sourceMappingURL=index.js.map

package/dist/BigWigAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AACzE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,kDAAO,iBAAiB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+declare const ConfirmDialog: ({ tracks, onClose, }: {
+    tracks: AnyConfigurationModel[];
+    onClose: (arg: boolean, arg1?: {
+        name: string;
+    }) => void;
+}) => JSX.Element;
+export default ConfirmDialog;

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js

@@ -0,0 +1,51 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const configuration_1 = require("@jbrowse/core/configuration");
+const ConfirmDialog = ({ tracks, onClose, }) => {
+    const [val, setVal] = (0, react_1.useState)('MultiWiggle ' + Date.now());
+    const allQuant = tracks.every(t => t.type === 'QuantitativeTrack');
+    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: () => onClose(false) },
+        react_1.default.createElement(material_1.DialogTitle, null, "Confirm multi-wiggle track create"),
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(material_1.Typography, null,
+                !allQuant
+                    ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
+                    : null,
+                "Listing:"),
+            react_1.default.createElement("ul", null, tracks.map(track => (react_1.default.createElement("li", { key: track.trackId },
+                (0, configuration_1.readConfObject)(track, 'name'),
+                " - ",
+                track.type)))),
+            react_1.default.createElement(material_1.TextField, { value: val, onChange: event => setVal(event.target.value), helperText: "Track name" }),
+            react_1.default.createElement(material_1.Typography, null, "Confirm creation of track?")),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { onClick: () => onClose(false), color: "primary" }, "Cancel"),
+            react_1.default.createElement(material_1.Button, { onClick: () => onClose(true, { name: val }), color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
+};
+exports.default = ConfirmDialog;
+//# sourceMappingURL=ConfirmDialog.js.map

package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ConfirmDialog.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/ConfirmDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAQsB;AACtB,+DAGoC;AAEpC,MAAM,aAAa,GAAG,CAAC,EACrB,MAAM,EACN,OAAO,GAIR,EAAE,EAAE;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAAC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,CAAA;IAC3D,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,mBAAmB,CAAC,CAAA;IAClE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QACxC,8BAAC,sBAAW,4CAAgD;QAC5D,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;gBACR,CAAC,QAAQ;oBACR,CAAC,CAAC,8GAA8G;oBAChH,CAAC,CAAC,IAAI;2BAEG;YACb,0CACG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACnB,sCAAI,GAAG,EAAE,KAAK,CAAC,OAAO;gBACnB,IAAA,8BAAc,EAAC,KAAK,EAAE,MAAM,CAAC;;gBAAK,KAAK,CAAC,IAAI,CAC1C,CACN,CAAC,CACC;YACL,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,UAAU,EAAC,YAAY,GACvB;YACF,8BAAC,qBAAU,qCAAwC,CACrC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,KAAK,EAAC,SAAS,aAE7C;YACT,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAC3C,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,SAAS,mBAGF,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,aAAa,CAAA"}

package/dist/CreateMultiWiggleExtension/index.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function (pm: PluginManager): void;

package/dist/CreateMultiWiggleExtension/index.js

@@ -0,0 +1,77 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = require("react");
+const configuration_1 = require("@jbrowse/core/configuration");
+const util_1 = require("@jbrowse/core/util");
+const ConfirmDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfirmDialog'))));
+function default_1(pm) {
+    pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', () => {
+        return [
+            {
+                label: 'Create multi-wiggle track',
+                onClick: (model) => {
+                    const tracks = model.selection;
+                    const trackIds = tracks.map(c => (0, configuration_1.readConfObject)(c, 'name'));
+                    function makeTrack(arg) {
+                        const subadapters = tracks
+                            .map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
+                            .map((c, idx) => ({ ...c, source: trackIds[idx] }));
+                        const assemblyNames = [
+                            ...new Set(tracks.map(c => (0, configuration_1.readConfObject)(c, 'assemblyNames')).flat()),
+                        ];
+                        const now = +Date.now();
+                        const trackId = `multitrack-${now}-sessionTrack`;
+                        (0, util_1.getSession)(model).addTrackConf({
+                            type: 'MultiQuantitativeTrack',
+                            trackId,
+                            name: arg.name,
+                            assemblyNames,
+                            adapter: {
+                                type: 'MultiWiggleAdapter',
+                                subadapters,
+                            },
+                        });
+                        model.view.showTrack(trackId);
+                    }
+                    (0, util_1.getSession)(model).queueDialog(handleClose => [
+                        ConfirmDialog,
+                        {
+                            tracks,
+                            onClose: (arg, arg1) => {
+                                if (arg) {
+                                    makeTrack(arg1);
+                                }
+                                handleClose();
+                            },
+                        },
+                    ]);
+                },
+            },
+        ];
+    });
+}
+exports.default = default_1;
+//# sourceMappingURL=index.js.map

package/dist/CreateMultiWiggleExtension/index.js.map

@@ -0,0 +1 @@
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package/dist/DensityRenderer/DensityRenderer.d.ts

@@ -0,0 +1,6 @@
+import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
+export default class DensityRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
+        reducedFeatures: import("@jbrowse/core/util").Feature[];
+    }>;
+}

package/dist/DensityRenderer/DensityRenderer.js

@@ -0,0 +1,14 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const drawxy_1 = require("../drawxy");
+const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+class DensityRenderer extends WiggleBaseRenderer_1.default {
+    async draw(ctx, props) {
+        return (0, drawxy_1.drawDensity)(ctx, props);
+    }
+}
+exports.default = DensityRenderer;
+//# sourceMappingURL=DensityRenderer.js.map

package/dist/DensityRenderer/DensityRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"DensityRenderer.js","sourceRoot":"","sources":["../../src/DensityRenderer/DensityRenderer.ts"],"names":[],"mappings":";;;;;AAAA,sCAAuC;AAEvC,+EAE8B;AAE9B,MAAqB,eAAgB,SAAQ,4BAAkB;IAC7D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,OAAO,IAAA,oBAAW,EAAC,GAAG,EAAE,KAAK,CAAC,CAAA;IAChC,CAAC;CACF;AAPD,kCAOC"}

package/dist/DensityRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/DensityRenderer/configSchema.js

@@ -0,0 +1,10 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+const configSchema_1 = __importDefault(require("../configSchema"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('DensityRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/DensityRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/DensityRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,+DAAiE;AAEjE,mEAA0C;AAE1C,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,iBAAiB,EACjB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/DensityRenderer/index.d.ts

@@ -1,6 +1,3 @@
-import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
-export { default as ReactComponent } from '../WiggleRendering';
-export default class DensityRenderer extends WiggleBaseRenderer {
-    draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<void>;
-}
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;