@jbrowse/plugin-wiggle 2.0.0 → 2.1.2

package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -0,0 +1,99 @@
+import React from 'react';
+import { measureText, getContainingView, getContainingTrack, } from '@jbrowse/core/util';
+import { getConf } from '@jbrowse/core/configuration';
+import { BaseLinearDisplayComponent, } from '@jbrowse/plugin-linear-genome-view';
+import { observer } from 'mobx-react';
+import YScaleBar from './YScaleBar';
+const trackLabelFontSize = 12.8;
+function getOffset(model) {
+    const { prefersOffset } = model;
+    const { trackLabels } = getContainingView(model);
+    const track = getContainingTrack(model);
+    const trackName = getConf(track, 'name');
+    return trackLabels === 'overlapping' && !prefersOffset
+        ? measureText(trackName, trackLabelFontSize) + 100
+        : 10;
+}
+const Wrapper = observer(({ children, model, exportSVG, }) => {
+    if (exportSVG) {
+        return React.createElement(React.Fragment, null, children);
+    }
+    else {
+        const { height } = model;
+        return (React.createElement("svg", { style: {
+                position: 'absolute',
+                top: 0,
+                left: 0,
+                pointerEvents: 'none',
+                height,
+                width: 1800,
+            } }, children));
+    }
+});
+const RectBg = (props) => {
+    const { color = 'rgb(255,255,255,0.8)' } = props;
+    return React.createElement("rect", { ...props, fill: color });
+};
+const ScoreLegend = observer(({ model }) => {
+    const { ticks, scaleType } = model;
+    const { width } = getContainingView(model);
+    const legend = `[${ticks.values[0]}-${ticks.values[1]}]` +
+        (scaleType === 'log' ? ' (log scale)' : '');
+    const len = measureText(legend, 14);
+    const padding = 25;
+    const xpos = width - len - padding;
+    return (React.createElement(React.Fragment, null,
+        React.createElement(RectBg, { y: 0, x: xpos, width: len + 6, height: 16 }),
+        React.createElement("text", { y: 13, x: xpos }, legend)));
+});
+const ColorLegend = observer(({ model, rowHeight, labelWidth, exportSVG, }) => {
+    const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
+    const svgFontSize = Math.min(rowHeight, 12);
+    const canDisplayLabel = rowHeight > 11;
+    const colorBoxWidth = renderColorBoxes ? 15 : 0;
+    const legendWidth = labelWidth + colorBoxWidth + 5;
+    const svgOffset = exportSVG ? 10 : 0;
+    const extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
+    return sources ? (React.createElement(React.Fragment, null,
+        /* 0.25 for hanging letters like g */
+        needsFullHeightScalebar ? (React.createElement(RectBg, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
+        sources.map((source, idx) => {
+            const boxHeight = Math.min(20, rowHeight);
+            return (React.createElement(React.Fragment, { key: source.name + '-' + idx },
+                !needsFullHeightScalebar ? (React.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: legendWidth, height: boxHeight })) : null,
+                source.color ? (React.createElement(RectBg, { y: idx * rowHeight + 1, x: extraOffset, width: colorBoxWidth, height: needsCustomLegend ? rowHeight : boxHeight, color: source.color })) : null,
+                canDisplayLabel ? (React.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
+        }))) : null;
+});
+export const StatBars = observer((props) => {
+    const { model, orientation, exportSVG } = props;
+    const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
+    const svgFontSize = Math.min(rowHeight, 12);
+    const canDisplayLabel = rowHeight > 11;
+    const { width: viewWidth } = getContainingView(model);
+    const minWidth = 20;
+    const ready = stats && sources;
+    if (!ready) {
+        return null;
+    }
+    const labelWidth = Math.max(...(sources
+        .map(s => measureText(s.name, svgFontSize))
+        .map(width => (canDisplayLabel ? width : minWidth)) || [0]));
+    return (React.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (React.createElement(React.Fragment, null,
+        React.createElement("g", { transform: `translate(${!exportSVG ? getOffset(model) : 0},0)` },
+            React.createElement(YScaleBar, { model: model, orientation: orientation })),
+        React.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
+            React.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (React.createElement(React.Fragment, null,
+        React.createElement(ColorLegend, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
+        rowHeightTooSmallForScalebar || needsCustomLegend ? (React.createElement(ScoreLegend, { ...props })) : (sources.map((_source, idx) => (React.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: JSON.stringify(ticks) + '-' + idx },
+            React.createElement(YScaleBar, { model: model, orientation: orientation })))))))));
+});
+const LinearWiggleDisplay = observer((props) => {
+    const { model } = props;
+    return (React.createElement("div", null,
+        React.createElement(BaseLinearDisplayComponent, { ...props }),
+        React.createElement(StatBars, { model: model })));
+});
+export default LinearWiggleDisplay;
+export { YScaleBar };
+//# sourceMappingURL=WiggleDisplayComponent.js.map

package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -0,0 +1 @@
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package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+import { WiggleDisplayModel } from '../models/model';
+declare const YScaleBar: ({ model, orientation, }: {
+    model: WiggleDisplayModel;
+    orientation?: string | undefined;
+}) => JSX.Element | null;
+export default YScaleBar;

package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js

@@ -0,0 +1,9 @@
+import React from 'react';
+import { observer } from 'mobx-react';
+import { Axis, LEFT, RIGHT } from 'react-d3-axis-mod';
+const YScaleBar = observer(({ model, orientation, }) => {
+    const { ticks } = model;
+    return ticks ? (React.createElement(Axis, { ...ticks, shadow: 2, format: (n) => n, style: { orient: orientation === 'left' ? LEFT : RIGHT } })) : null;
+});
+export default YScaleBar;
+//# sourceMappingURL=YScaleBar.js.map

package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/YScaleBar.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAA;AAGrD,MAAM,SAAS,GAAG,QAAQ,CACxB,CAAC,EACC,KAAK,EACL,WAAW,GAIZ,EAAE,EAAE;IACH,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,oBAAC,IAAI,OACC,KAAK,EACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,EAAE,GACxD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AACD,eAAe,SAAS,CAAA"}

package/esm/MultiLinearWiggleDisplay/components/util.d.ts

@@ -0,0 +1,10 @@
+export declare function moveUp(arr: {
+    name: string;
+}[], sel: string[], by?: number): {
+    name: string;
+}[];
+export declare function moveDown(arr: {
+    name: string;
+}[], sel: string[], by?: number): {
+    name: string;
+}[];

package/esm/MultiLinearWiggleDisplay/components/util.js

@@ -0,0 +1,31 @@
+export function moveUp(arr, sel, by = 1) {
+    const idxs = sel
+        .map(l => arr.findIndex(v => v.name === l))
+        .sort((a, b) => a - b);
+    let lastIdx = 0;
+    for (let i = 0; i < idxs.length; i++) {
+        const old = idxs[i];
+        const idx = Math.max(lastIdx, old - by);
+        if (idx >= lastIdx) {
+            arr.splice(idx, 0, arr.splice(old, 1)[0]);
+        }
+        lastIdx = lastIdx + 1;
+    }
+    return arr;
+}
+export function moveDown(arr, sel, by = 1) {
+    const idxs = sel
+        .map(l => arr.findIndex(v => v.name === l))
+        .sort((a, b) => b - a);
+    let lastIdx = arr.length - 1;
+    for (let i = 0; i < idxs.length; i++) {
+        const old = idxs[i];
+        const idx = Math.min(lastIdx, old + by);
+        if (idx <= lastIdx) {
+            arr.splice(idx, 0, arr.splice(old, 1)[0]);
+        }
+        lastIdx = lastIdx - 1;
+    }
+    return arr;
+}
+//# sourceMappingURL=util.js.map

package/esm/MultiLinearWiggleDisplay/components/util.js.map

@@ -0,0 +1 @@
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package/esm/MultiLinearWiggleDisplay/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/MultiLinearWiggleDisplay/index.js

@@ -0,0 +1,18 @@
+import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
+import configSchemaFactory from './models/configSchema';
+import modelFactory from './models/model';
+import ReactComponent from './components/WiggleDisplayComponent';
+export default (pluginManager) => {
+    pluginManager.addDisplayType(() => {
+        const configSchema = configSchemaFactory(pluginManager);
+        return new DisplayType({
+            name: 'MultiLinearWiggleDisplay',
+            configSchema,
+            stateModel: modelFactory(pluginManager, configSchema),
+            trackType: 'MultiQuantitativeTrack',
+            viewType: 'LinearGenomeView',
+            ReactComponent,
+        });
+    });
+};
+//# sourceMappingURL=index.js.map

package/esm/MultiLinearWiggleDisplay/index.js.map

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package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/MultiLinearWiggleDisplay/models/configSchema.js

@@ -0,0 +1,74 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import { baseLinearDisplayConfigSchema } from '@jbrowse/plugin-linear-genome-view';
+import { types } from 'mobx-state-tree';
+export default function WiggleConfigFactory(pluginManager) {
+    const MultiXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiXYPlotRenderer').configSchema;
+    const MultiDensityRendererConfigSchema = pluginManager.getRendererType('MultiDensityRenderer').configSchema;
+    const MultiRowXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiRowXYPlotRenderer').configSchema;
+    const MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
+    const MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
+    return ConfigurationSchema('MultiLinearWiggleDisplay', {
+        autoscale: {
+            type: 'stringEnum',
+            defaultValue: 'local',
+            model: types.enumeration('Autoscale type', [
+                'global',
+                'local',
+                'globalsd',
+                'localsd',
+                'zscore',
+            ]),
+            description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
+        },
+        minimalTicks: {
+            type: 'boolean',
+            defaultValue: false,
+            description: 'use the minimal amount of ticks',
+        },
+        minScore: {
+            type: 'number',
+            defaultValue: Number.MIN_VALUE,
+            description: 'minimum value for the y-scale',
+        },
+        maxScore: {
+            type: 'number',
+            description: 'maximum value for the y-scale',
+            defaultValue: Number.MAX_VALUE,
+        },
+        numStdDev: {
+            type: 'number',
+            description: 'number of standard deviations to use for autoscale types globalsd or localsd',
+            defaultValue: 3,
+        },
+        scaleType: {
+            type: 'stringEnum',
+            model: types.enumeration('Scale type', ['linear', 'log']),
+            description: 'The type of scale to use',
+            defaultValue: 'linear',
+        },
+        inverted: {
+            type: 'boolean',
+            description: 'draw upside down',
+            defaultValue: false,
+        },
+        defaultRendering: {
+            type: 'stringEnum',
+            model: types.enumeration('Rendering', [
+                'multirowxy',
+                'xyplot',
+                'multirowdensity',
+                'multiline',
+                'multirowline',
+            ]),
+            defaultValue: 'multirowxy',
+        },
+        renderers: ConfigurationSchema('RenderersConfiguration', {
+            MultiXYPlotRenderer: MultiXYPlotRendererConfigSchema,
+            MultiDensityRenderer: MultiDensityRendererConfigSchema,
+            MultiRowXYPlotRenderer: MultiRowXYPlotRendererConfigSchema,
+            MultiLineRenderer: MultiLineRendererConfigSchema,
+            MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
+        }),
+    }, { baseConfiguration: baseLinearDisplayConfigSchema, explicitlyTyped: true });
+}
+//# sourceMappingURL=configSchema.js.map

package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map

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package/esm/MultiLinearWiggleDisplay/models/model.d.ts

@@ -0,0 +1,339 @@
+import React from 'react';
+import { Instance } from 'mobx-state-tree';
+import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { Feature } from '@jbrowse/core/util';
+import PluginManager from '@jbrowse/core/PluginManager';
+interface Source {
+    name: string;
+    color?: string;
+    group?: string;
+}
+declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any;
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void;
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"MultiLinearWiggleDisplay">;
+    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    height: import("mobx-state-tree").IType<number | undefined, number, number>;
+    color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    layout: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
+    constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+        max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+} & {
+    readonly RenderingComponent: React.FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: Function | undefined;
+        blockState?: Record<string, any> | undefined;
+    }>;
+    readonly DisplayBlurb: React.FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: any;
+    renderProps(): any;
+    readonly rendererType: any;
+    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): undefined;
+} & {
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    currBpPerPx: number;
+    message: string;
+    featureIdUnderMouse: string | undefined;
+    contextMenuFeature: Feature | undefined;
+    scrollTop: number;
+    estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+    estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+} & {
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
+    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
+} & {
+    readonly renderDelay: number;
+    readonly TooltipComponent: React.FC<any>;
+    readonly selectedFeatureId: string | undefined;
+    readonly DisplayMessageComponent: React.FC<any> | undefined;
+} & {
+    readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
+    readonly featureUnderMouse: Feature | undefined;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    searchFeatureByID(id: string): [number, number, number, number] | undefined;
+    readonly currentBytesRequested: number;
+    readonly currentFeatureScreenDensity: number;
+    readonly maxFeatureScreenDensity: any;
+    readonly estimatedStatsReady: boolean;
+    readonly maxAllowableBytes: number;
+} & {
+    setMessage(message: string): void;
+    afterAttach(): void;
+    estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
+        headers?: Record<string, string> | undefined;
+        signal?: AbortSignal | undefined;
+        filters?: string[] | undefined;
+    }): Promise<{}>;
+    setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
+    setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+    clearRegionStats(): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    setScrollTop(scrollTop: number): void;
+    updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
+    setCurrBpPerPx(n: number): void;
+    deleteBlock(key: string): void;
+    selectFeature(feature: Feature): void;
+    clearFeatureSelection(): void;
+    setFeatureIdUnderMouse(feature: string | undefined): void;
+    reload(): void;
+    setContextMenuFeature(feature?: Feature | undefined): void;
+} & {
+    readonly regionTooLarge: boolean;
+    readonly regionTooLargeReason: string;
+} & {
+    reload(): Promise<void>;
+    afterAttach(): void;
+} & {
+    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    contextMenuItems(): {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+    }[];
+    renderProps(): any;
+} & {
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+        overrideHeight: number;
+    }): Promise<JSX.Element>;
+} & {
+    statsReady: boolean;
+    message: string | undefined;
+    stats: {
+        scoreMin: number;
+        scoreMax: number;
+    };
+    statsRegion: string | undefined;
+    statsFetchInProgress: AbortController | undefined;
+    featureUnderMouseVolatile: Feature | undefined;
+    sourcesVolatile: Source[] | undefined;
+} & {
+    setLayout(layout: Source[]): void;
+    clearLayout(): void;
+    updateStats(stats: {
+        scoreMin: number;
+        scoreMax: number;
+    }): void;
+    setSources(sources: Source[]): void;
+    setColor(color: string): void;
+    setPosColor(color: string): void;
+    setNegColor(color: string): void;
+    setLoading(aborter: AbortController): void;
+    selectFeature(feature: Feature): void;
+    setFeatureUnderMouse(f?: Feature): void;
+    setResolution(res: number): void;
+    setFill(fill: number): void;
+    toggleLogScale(): void;
+    setScaleType(scale?: string): void;
+    setSummaryScoreMode(val: string): void;
+    setAutoscale(val: string): void;
+    setMaxScore(val?: number): void;
+    setRendererType(val: string): void;
+    setMinScore(val?: number): void;
+    toggleCrossHatches(): void;
+    setCrossHatches(cross: boolean): void;
+} & {
+    readonly featureUnderMouse: Feature | undefined;
+    readonly TooltipComponent: React.FC<{}>;
+    readonly adapterTypeName: any;
+    readonly rendererTypeNameSimple: any;
+    readonly rendererTypeName: string;
+    readonly filters: undefined;
+    readonly scaleType: string;
+    readonly maxScore: number;
+    readonly minScore: number;
+} & {
+    readonly rendererConfig: any;
+} & {
+    readonly needsScalebar: boolean;
+    readonly needsFullHeightScalebar: boolean;
+    readonly isMultiRow: boolean;
+    readonly needsCustomLegend: boolean;
+    readonly canHaveFill: boolean;
+    readonly renderColorBoxes: boolean;
+    readonly prefersOffset: boolean;
+    readonly sources: {
+        color: string;
+        name: string;
+        group?: string | undefined;
+    }[] | undefined;
+} & {
+    readonly filled: boolean;
+    readonly summaryScoreModeSetting: string;
+    readonly domain: number[];
+    readonly scaleOpts: {
+        autoscaleType: string;
+        domain: number[];
+        stats: {
+            scoreMin: number;
+            scoreMax: number;
+        };
+        scaleType: string;
+        inverted: any;
+    };
+    readonly autoscaleType: string;
+    readonly displayCrossHatchesSetting: boolean;
+    readonly rowHeight: number;
+    readonly rowHeightTooSmallForScalebar: boolean;
+    readonly useMinimalTicks: any;
+} & {
+    readonly ticks: {
+        range: number[];
+        values: number[];
+        format: (d: import("d3-scale").NumberValue) => string;
+        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+    };
+    readonly colors: string[];
+    readonly adapterCapabilities: string[];
+} & {
+    renderProps(): any;
+    readonly hasResolution: boolean;
+    readonly hasGlobalStats: boolean;
+    readonly fillSetting: 2 | 1 | 0;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+        type?: undefined;
+        checked?: undefined;
+        onClick?: undefined;
+    } | {
+        type: string;
+        label: string;
+        checked: boolean;
+        onClick: () => void;
+        subMenu?: undefined;
+    })[];
+} & {
+    reload(): Promise<void>;
+    afterAttach(): void;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+        overrideHeight: number;
+    }): Promise<JSX.Element>;
+}, import("mobx-state-tree")._NotCustomized, {
+    type: string;
+    height: number;
+    id: string;
+    rpcDriverName: string | undefined;
+    userBpPerPxLimit: number | undefined;
+    userByteSizeLimit: number | undefined;
+} & import("mobx-state-tree")._NotCustomized>;
+export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
+export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
+export default stateModelFactory;