@jbrowse/plugin-wiggle 2.0.0 → 2.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (422) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  2. package/dist/BigWigAdapter/BigWigAdapter.js +73 -169
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  4. package/dist/BigWigAdapter/configSchema.js +6 -1
  5. package/dist/BigWigAdapter/configSchema.js.map +1 -1
  6. package/dist/BigWigAdapter/index.d.ts +3 -1
  7. package/dist/BigWigAdapter/index.js +37 -3
  8. package/dist/BigWigAdapter/index.js.map +1 -1
  9. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  10. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +51 -0
  11. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  12. package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
  13. package/dist/CreateMultiWiggleExtension/index.js +77 -0
  14. package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
  15. package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
  16. package/dist/DensityRenderer/DensityRenderer.js +14 -0
  17. package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
  18. package/dist/DensityRenderer/configSchema.d.ts +2 -0
  19. package/dist/DensityRenderer/configSchema.js +10 -0
  20. package/dist/DensityRenderer/configSchema.js.map +1 -0
  21. package/dist/DensityRenderer/index.d.ts +3 -6
  22. package/dist/DensityRenderer/index.js +11 -150
  23. package/dist/DensityRenderer/index.js.map +1 -1
  24. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  25. package/dist/LinePlotRenderer/LinePlotRenderer.js +11 -177
  26. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  27. package/dist/LinePlotRenderer/configSchema.d.ts +2 -0
  28. package/dist/LinePlotRenderer/configSchema.js +16 -0
  29. package/dist/LinePlotRenderer/configSchema.js.map +1 -0
  30. package/dist/LinePlotRenderer/index.d.ts +3 -3
  31. package/dist/LinePlotRenderer/index.js +11 -14
  32. package/dist/LinePlotRenderer/index.js.map +1 -1
  33. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  34. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +21 -46
  35. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  36. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +16 -32
  37. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -1
  38. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  39. package/dist/LinearWiggleDisplay/components/Tooltip.js +21 -143
  40. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  41. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +15 -26
  42. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -1
  43. package/dist/LinearWiggleDisplay/components/YScaleBar.js +6 -18
  44. package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -1
  45. package/dist/LinearWiggleDisplay/index.d.ts +7 -3
  46. package/dist/LinearWiggleDisplay/index.js +23 -8
  47. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  48. package/dist/LinearWiggleDisplay/models/configSchema.js +6 -6
  49. package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
  50. package/dist/LinearWiggleDisplay/models/model.d.ts +24 -5
  51. package/dist/LinearWiggleDisplay/models/model.js +392 -512
  52. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  53. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  54. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +42 -0
  55. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  56. package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
  57. package/dist/MultiDensityRenderer/configSchema.js +10 -0
  58. package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
  59. package/dist/MultiDensityRenderer/index.d.ts +3 -0
  60. package/dist/MultiDensityRenderer/index.js +17 -0
  61. package/dist/MultiDensityRenderer/index.js.map +1 -0
  62. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  63. package/dist/MultiLineRenderer/MultiLineRenderer.js +31 -0
  64. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  65. package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
  66. package/dist/MultiLineRenderer/configSchema.js +23 -0
  67. package/dist/MultiLineRenderer/configSchema.js.map +1 -0
  68. package/dist/MultiLineRenderer/index.d.ts +3 -0
  69. package/dist/MultiLineRenderer/index.js +17 -0
  70. package/dist/MultiLineRenderer/index.js.map +1 -0
  71. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  72. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +191 -0
  73. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  74. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  75. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +75 -0
  76. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  77. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  78. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +49 -0
  79. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  80. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  81. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +105 -0
  82. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  83. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  84. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +14 -0
  85. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  86. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  87. package/dist/MultiLinearWiggleDisplay/components/util.js +36 -0
  88. package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  89. package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
  90. package/dist/MultiLinearWiggleDisplay/index.js +23 -0
  91. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
  92. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  93. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
  94. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  95. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  96. package/dist/MultiLinearWiggleDisplay/models/model.js +598 -0
  97. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  98. package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
  99. package/dist/MultiQuantitativeTrack/index.js +19 -0
  100. package/dist/MultiQuantitativeTrack/index.js.map +1 -0
  101. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  102. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +39 -0
  103. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  104. package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
  105. package/dist/MultiRowLineRenderer/configSchema.js +23 -0
  106. package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
  107. package/dist/MultiRowLineRenderer/index.d.ts +3 -0
  108. package/dist/MultiRowLineRenderer/index.js +17 -0
  109. package/dist/MultiRowLineRenderer/index.js.map +1 -0
  110. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  111. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +68 -0
  112. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  113. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  114. package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
  115. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  116. package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
  117. package/dist/MultiRowXYPlotRenderer/index.js +17 -0
  118. package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
  119. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +29 -0
  120. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +92 -0
  121. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  122. package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
  123. package/dist/MultiWiggleAdapter/configSchema.js +14 -0
  124. package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
  125. package/dist/MultiWiggleAdapter/index.d.ts +3 -0
  126. package/dist/MultiWiggleAdapter/index.js +43 -0
  127. package/dist/MultiWiggleAdapter/index.js.map +1 -0
  128. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  129. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +113 -0
  130. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  131. package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  132. package/dist/MultiWiggleAddTrackWidget/index.js +17 -0
  133. package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
  134. package/dist/MultiWiggleRendering.d.ts +21 -0
  135. package/dist/MultiWiggleRendering.js +100 -0
  136. package/dist/MultiWiggleRendering.js.map +1 -0
  137. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  138. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +57 -0
  139. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  140. package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  141. package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
  142. package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
  143. package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
  144. package/dist/MultiXYPlotRenderer/index.js +17 -0
  145. package/dist/MultiXYPlotRenderer/index.js.map +1 -0
  146. package/dist/QuantitativeTrack/index.d.ts +3 -0
  147. package/dist/QuantitativeTrack/index.js +19 -0
  148. package/dist/QuantitativeTrack/index.js.map +1 -0
  149. package/dist/Tooltip.d.ts +20 -0
  150. package/dist/Tooltip.js +96 -0
  151. package/dist/Tooltip.js.map +1 -0
  152. package/dist/WiggleBaseRenderer.d.ts +9 -10
  153. package/dist/WiggleBaseRenderer.js +34 -112
  154. package/dist/WiggleBaseRenderer.js.map +1 -1
  155. package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
  156. package/dist/WiggleRPC/rpcMethods.js +108 -176
  157. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  158. package/dist/WiggleRendering.d.ts +1 -1
  159. package/dist/WiggleRendering.js +20 -73
  160. package/dist/WiggleRendering.js.map +1 -1
  161. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  162. package/dist/XYPlotRenderer/XYPlotRenderer.js +23 -223
  163. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  164. package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
  165. package/dist/XYPlotRenderer/configSchema.js +31 -0
  166. package/dist/XYPlotRenderer/configSchema.js.map +1 -0
  167. package/dist/XYPlotRenderer/index.d.ts +7 -3
  168. package/dist/XYPlotRenderer/index.js +15 -25
  169. package/dist/XYPlotRenderer/index.js.map +1 -1
  170. package/dist/configSchema.js +2 -7
  171. package/dist/configSchema.js.map +1 -1
  172. package/dist/drawxy.d.ts +50 -0
  173. package/dist/drawxy.js +292 -0
  174. package/dist/drawxy.js.map +1 -0
  175. package/dist/index.d.ts +79 -21
  176. package/dist/index.js +73 -124
  177. package/dist/index.js.map +1 -1
  178. package/dist/util.d.ts +34 -1
  179. package/dist/util.js +128 -33
  180. package/dist/util.js.map +1 -1
  181. package/esm/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  182. package/esm/BigWigAdapter/BigWigAdapter.js +37 -18
  183. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  184. package/esm/BigWigAdapter/configSchema.js +5 -0
  185. package/esm/BigWigAdapter/configSchema.js.map +1 -1
  186. package/esm/BigWigAdapter/index.d.ts +3 -1
  187. package/esm/BigWigAdapter/index.js +14 -1
  188. package/esm/BigWigAdapter/index.js.map +1 -1
  189. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  190. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
  191. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  192. package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
  193. package/esm/CreateMultiWiggleExtension/index.js +51 -0
  194. package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
  195. package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
  196. package/esm/DensityRenderer/DensityRenderer.js +8 -0
  197. package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
  198. package/esm/DensityRenderer/configSchema.d.ts +2 -0
  199. package/esm/DensityRenderer/configSchema.js +5 -0
  200. package/esm/DensityRenderer/configSchema.js.map +1 -0
  201. package/esm/DensityRenderer/index.d.ts +3 -6
  202. package/esm/DensityRenderer/index.js +11 -38
  203. package/esm/DensityRenderer/index.js.map +1 -1
  204. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  205. package/esm/LinePlotRenderer/LinePlotRenderer.js +7 -65
  206. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -1
  207. package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
  208. package/esm/LinePlotRenderer/configSchema.js +11 -0
  209. package/esm/LinePlotRenderer/configSchema.js.map +1 -0
  210. package/esm/LinePlotRenderer/index.d.ts +3 -3
  211. package/esm/LinePlotRenderer/index.js +11 -11
  212. package/esm/LinePlotRenderer/index.js.map +1 -1
  213. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  214. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +9 -16
  215. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  216. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  217. package/esm/LinearWiggleDisplay/components/Tooltip.js +3 -76
  218. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -1
  219. package/esm/LinearWiggleDisplay/index.d.ts +7 -3
  220. package/esm/LinearWiggleDisplay/index.js +20 -3
  221. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  222. package/esm/LinearWiggleDisplay/models/model.d.ts +24 -5
  223. package/esm/LinearWiggleDisplay/models/model.js +87 -133
  224. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  225. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  226. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
  227. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  228. package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
  229. package/esm/MultiDensityRenderer/configSchema.js +5 -0
  230. package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
  231. package/esm/MultiDensityRenderer/index.d.ts +3 -0
  232. package/esm/MultiDensityRenderer/index.js +12 -0
  233. package/esm/MultiDensityRenderer/index.js.map +1 -0
  234. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  235. package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
  236. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  237. package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
  238. package/esm/MultiLineRenderer/configSchema.js +18 -0
  239. package/esm/MultiLineRenderer/configSchema.js.map +1 -0
  240. package/esm/MultiLineRenderer/index.d.ts +3 -0
  241. package/esm/MultiLineRenderer/index.js +12 -0
  242. package/esm/MultiLineRenderer/index.js.map +1 -0
  243. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  244. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
  245. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  246. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  247. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  248. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  249. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  250. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
  251. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  252. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  253. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
  254. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  255. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  256. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
  257. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  258. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  259. package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
  260. package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  261. package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
  262. package/esm/MultiLinearWiggleDisplay/index.js +18 -0
  263. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
  264. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  265. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
  266. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  267. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  268. package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
  269. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  270. package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
  271. package/esm/MultiQuantitativeTrack/index.js +14 -0
  272. package/esm/MultiQuantitativeTrack/index.js.map +1 -0
  273. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  274. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
  275. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  276. package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
  277. package/esm/MultiRowLineRenderer/configSchema.js +18 -0
  278. package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
  279. package/esm/MultiRowLineRenderer/index.d.ts +3 -0
  280. package/esm/MultiRowLineRenderer/index.js +12 -0
  281. package/esm/MultiRowLineRenderer/index.js.map +1 -0
  282. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  283. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
  284. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  285. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  286. package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
  287. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  288. package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
  289. package/esm/MultiRowXYPlotRenderer/index.js +12 -0
  290. package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
  291. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +29 -0
  292. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +89 -0
  293. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  294. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
  295. package/esm/MultiWiggleAdapter/configSchema.js +12 -0
  296. package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
  297. package/esm/MultiWiggleAdapter/index.d.ts +3 -0
  298. package/esm/MultiWiggleAdapter/index.js +15 -0
  299. package/esm/MultiWiggleAdapter/index.js.map +1 -0
  300. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  301. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
  302. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  303. package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  304. package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
  305. package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
  306. package/esm/MultiWiggleRendering.d.ts +21 -0
  307. package/esm/MultiWiggleRendering.js +75 -0
  308. package/esm/MultiWiggleRendering.js.map +1 -0
  309. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  310. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
  311. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  312. package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  313. package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
  314. package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
  315. package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
  316. package/esm/MultiXYPlotRenderer/index.js +12 -0
  317. package/esm/MultiXYPlotRenderer/index.js.map +1 -0
  318. package/esm/QuantitativeTrack/index.d.ts +3 -0
  319. package/esm/QuantitativeTrack/index.js +14 -0
  320. package/esm/QuantitativeTrack/index.js.map +1 -0
  321. package/esm/Tooltip.d.ts +20 -0
  322. package/esm/Tooltip.js +71 -0
  323. package/esm/Tooltip.js.map +1 -0
  324. package/esm/WiggleBaseRenderer.d.ts +9 -10
  325. package/esm/WiggleBaseRenderer.js +9 -6
  326. package/esm/WiggleBaseRenderer.js.map +1 -1
  327. package/esm/WiggleRPC/rpcMethods.d.ts +17 -1
  328. package/esm/WiggleRPC/rpcMethods.js +49 -7
  329. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  330. package/esm/WiggleRendering.d.ts +1 -1
  331. package/esm/WiggleRendering.js +4 -8
  332. package/esm/WiggleRendering.js.map +1 -1
  333. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  334. package/esm/XYPlotRenderer/XYPlotRenderer.js +16 -99
  335. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -1
  336. package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
  337. package/esm/XYPlotRenderer/configSchema.js +26 -0
  338. package/esm/XYPlotRenderer/configSchema.js.map +1 -0
  339. package/esm/XYPlotRenderer/index.d.ts +7 -3
  340. package/esm/XYPlotRenderer/index.js +12 -22
  341. package/esm/XYPlotRenderer/index.js.map +1 -1
  342. package/esm/configSchema.js +0 -5
  343. package/esm/configSchema.js.map +1 -1
  344. package/esm/drawxy.d.ts +50 -0
  345. package/esm/drawxy.js +286 -0
  346. package/esm/drawxy.js.map +1 -0
  347. package/esm/index.d.ts +79 -21
  348. package/esm/index.js +49 -74
  349. package/esm/index.js.map +1 -1
  350. package/esm/util.d.ts +34 -1
  351. package/esm/util.js +108 -0
  352. package/esm/util.js.map +1 -1
  353. package/package.json +13 -8
  354. package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
  355. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
  356. package/src/BigWigAdapter/configSchema.ts +5 -0
  357. package/src/BigWigAdapter/index.ts +19 -1
  358. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
  359. package/src/CreateMultiWiggleExtension/index.ts +57 -0
  360. package/src/DensityRenderer/DensityRenderer.test.js +8 -2
  361. package/src/DensityRenderer/DensityRenderer.ts +14 -0
  362. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
  363. package/src/DensityRenderer/configSchema.ts +11 -0
  364. package/src/DensityRenderer/index.ts +14 -53
  365. package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
  366. package/src/LinePlotRenderer/{index.js → configSchema.ts} +3 -4
  367. package/src/LinePlotRenderer/index.ts +16 -0
  368. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +17 -19
  369. package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -122
  370. package/src/LinearWiggleDisplay/index.ts +24 -3
  371. package/src/LinearWiggleDisplay/models/model.tsx +98 -174
  372. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
  373. package/src/MultiDensityRenderer/configSchema.ts +10 -0
  374. package/src/MultiDensityRenderer/index.ts +16 -0
  375. package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
  376. package/src/MultiLineRenderer/configSchema.ts +24 -0
  377. package/src/MultiLineRenderer/index.ts +17 -0
  378. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
  379. package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
  380. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
  381. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
  382. package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
  383. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
  384. package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
  385. package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
  386. package/src/MultiLinearWiggleDisplay/index.ts +20 -0
  387. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
  388. package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
  389. package/src/MultiQuantitativeTrack/index.ts +26 -0
  390. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
  391. package/src/MultiRowLineRenderer/configSchema.ts +25 -0
  392. package/src/MultiRowLineRenderer/index.ts +16 -0
  393. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
  394. package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
  395. package/src/MultiRowXYPlotRenderer/index.ts +16 -0
  396. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +124 -0
  397. package/src/MultiWiggleAdapter/configSchema.ts +16 -0
  398. package/src/MultiWiggleAdapter/index.ts +20 -0
  399. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  400. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
  401. package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
  402. package/src/MultiWiggleRendering.tsx +125 -0
  403. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
  404. package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
  405. package/src/MultiXYPlotRenderer/index.ts +17 -0
  406. package/src/QuantitativeTrack/index.ts +26 -0
  407. package/src/Tooltip.tsx +123 -0
  408. package/src/WiggleBaseRenderer.tsx +17 -10
  409. package/src/WiggleRPC/rpcMethods.ts +68 -17
  410. package/src/WiggleRendering.tsx +12 -18
  411. package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
  412. package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -171
  413. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
  414. package/src/XYPlotRenderer/configSchema.ts +32 -0
  415. package/src/XYPlotRenderer/index.ts +16 -27
  416. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
  417. package/src/configSchema.ts +0 -5
  418. package/src/declare.d.ts +0 -1
  419. package/src/drawxy.ts +387 -0
  420. package/src/index.ts +75 -129
  421. package/src/util.ts +174 -0
  422. package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
@@ -1 +1 @@
1
- {"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,0HAO0E;AAC1E,gFAAgF;AA8BhF;IAAyD,sCAAmB;IAA5E;QAAA,qEA8CC;QA7CC,iBAAW,GAAG,IAAI,CAAA;;IA6CpB,CAAC;IA3CO,mCAAM,GAAZ,UAAa,WAAmC;;;;;;4BAC7B,qBAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,EAAA;;wBAA9C,QAAQ,GAAG,SAAmC;wBAC5C,MAAM,GAAuB,WAAW,OAAlC,EAAE,OAAO,GAAc,WAAW,QAAzB,EAAE,OAAO,GAAK,WAAW,QAAhB,CAAgB;wBAC1C,KAAA,OAAW,OAAO,IAAA,EAAjB,MAAM,QAAA,CAAW;wBAClB,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;wBAEvC,qBAAM,IAAA,6CAAsB,EACtC,KAAK,EACL,MAAM,EACN,WAAW,EACX,UAAC,GAA6B;gCAC5B,OAAA,KAAI,CAAC,IAAI,CAAC,GAAG,wBACR,WAAW,KACd,QAAQ,UAAA,IACR;4BAHF,CAGE,CACL,EAAA;;wBATK,GAAG,GAAG,SASX;wBAEe,qBAAM,iBAAM,MAAM,2CAC7B,WAAW,GACX,GAAG,KACN,QAAQ,UAAA,EACR,MAAM,QAAA,EACN,KAAK,OAAA,IACL,EAAA;;wBANI,OAAO,GAAG,SAMd;wBAEF,qDACK,OAAO,GACP,GAAG,KACN,QAAQ,UAAA,EACR,uBAAuB,EAAE,IAAI,EAC7B,MAAM,QAAA,EACN,KAAK,OAAA,KACN;;;;KACF;IAUH,yBAAC;AAAD,CAAC,AA9CD,CAAyD,6BAAmB,GA8C3E"}
1
+ {"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":";;;;;AAAA,4HAO0E;AAC1E,6CAAoE;AAmCpE,MAA8B,kBAAmB,SAAQ,6BAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;IAgDpB,CAAC;IA9CC,KAAK,CAAC,MAAM,CAAC,WAAmC;QAC9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;QACpD,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;QAChD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,aAAa;QACb,MAAM,EAAE,eAAe,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,IAAA,6BAAsB,EAC/D,KAAK,EACL,MAAM,EACN,WAAW,EACX,GAAG,CAAC,EAAE,CACJ,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE;YACb,GAAG,WAAW;YACd,QAAQ;SACT,CAAC,CACL,CAAA;QAED,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC;YACjC,GAAG,WAAW;YACd,GAAG,IAAI;YACP,QAAQ;YACR,MAAM;YACN,KAAK;SACN,CAAC,CAAA;QAEF,OAAO;YACL,GAAG,OAAO;YACV,GAAG,IAAI;YACP,QAAQ,EAAE,CAAC,eAAe;gBACxB,CAAC,CAAC,IAAI,GAAG,CAAC,eAAe,CAAC,GAAG,CAAC,CAAC,CAAU,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;gBAC3D,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAyB;YAC7C,MAAM;YACN,KAAK;YACL,uBAAuB,EAAE,IAAI;SAC9B,CAAA;IACH,CAAC;CAUF;AAjDD,qCAiDC"}
@@ -1,6 +1,6 @@
1
1
  import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
2
  import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
3
- import { Region } from '@jbrowse/core/util/types';
3
+ import { Region } from '@jbrowse/core/util';
4
4
  import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
5
5
  import { FeatureStats } from '@jbrowse/core/util/stats';
6
6
  export declare class WiggleGetGlobalStats extends RpcMethodType {
@@ -29,3 +29,19 @@ export declare class WiggleGetMultiRegionStats extends RpcMethodType {
29
29
  bpPerPx: number;
30
30
  }, rpcDriverClassName: string): Promise<FeatureStats>;
31
31
  }
32
+ export declare class MultiWiggleGetSources extends RpcMethodType {
33
+ name: string;
34
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
35
+ serializeArguments(args: RenderArgs & {
36
+ signal?: AbortSignal;
37
+ statusCallback?: Function;
38
+ }, rpcDriverClassName: string): Promise<{}>;
39
+ execute(args: {
40
+ adapterConfig: {};
41
+ signal?: RemoteAbortSignal;
42
+ sessionId: string;
43
+ headers?: Record<string, string>;
44
+ regions: Region[];
45
+ bpPerPx: number;
46
+ }, rpcDriverClassName: string): Promise<any>;
47
+ }
@@ -1,189 +1,121 @@
1
1
  "use strict";
2
- var __extends = (this && this.__extends) || (function () {
3
- var extendStatics = function (d, b) {
4
- extendStatics = Object.setPrototypeOf ||
5
- ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
6
- function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
7
- return extendStatics(d, b);
8
- };
9
- return function (d, b) {
10
- if (typeof b !== "function" && b !== null)
11
- throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
12
- extendStatics(d, b);
13
- function __() { this.constructor = d; }
14
- d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
15
- };
16
- })();
17
- var __assign = (this && this.__assign) || function () {
18
- __assign = Object.assign || function(t) {
19
- for (var s, i = 1, n = arguments.length; i < n; i++) {
20
- s = arguments[i];
21
- for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
22
- t[p] = s[p];
23
- }
24
- return t;
25
- };
26
- return __assign.apply(this, arguments);
27
- };
28
- var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
29
- function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
30
- return new (P || (P = Promise))(function (resolve, reject) {
31
- function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
32
- function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
33
- function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
34
- step((generator = generator.apply(thisArg, _arguments || [])).next());
35
- });
36
- };
37
- var __generator = (this && this.__generator) || function (thisArg, body) {
38
- var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
39
- return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
40
- function verb(n) { return function (v) { return step([n, v]); }; }
41
- function step(op) {
42
- if (f) throw new TypeError("Generator is already executing.");
43
- while (_) try {
44
- if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
45
- if (y = 0, t) op = [op[0] & 2, t.value];
46
- switch (op[0]) {
47
- case 0: case 1: t = op; break;
48
- case 4: _.label++; return { value: op[1], done: false };
49
- case 5: _.label++; y = op[1]; op = [0]; continue;
50
- case 7: op = _.ops.pop(); _.trys.pop(); continue;
51
- default:
52
- if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
53
- if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
54
- if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
55
- if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
56
- if (t[2]) _.ops.pop();
57
- _.trys.pop(); continue;
58
- }
59
- op = body.call(thisArg, _);
60
- } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
61
- if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
62
- }
63
- };
64
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
65
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
66
4
  };
67
5
  Object.defineProperty(exports, "__esModule", { value: true });
68
- exports.WiggleGetMultiRegionStats = exports.WiggleGetGlobalStats = void 0;
69
- var dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
70
- var RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
71
- var util_1 = require("@jbrowse/core/util");
72
- var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
73
- var serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
74
- var WiggleGetGlobalStats = /** @class */ (function (_super) {
75
- __extends(WiggleGetGlobalStats, _super);
76
- function WiggleGetGlobalStats() {
77
- var _this = _super !== null && _super.apply(this, arguments) || this;
78
- _this.name = 'WiggleGetGlobalStats';
79
- return _this;
6
+ exports.MultiWiggleGetSources = exports.WiggleGetMultiRegionStats = exports.WiggleGetGlobalStats = void 0;
7
+ const RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
8
+ const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
9
+ const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
10
+ const util_1 = require("@jbrowse/core/util");
11
+ const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
12
+ class WiggleGetGlobalStats extends RpcMethodType_1.default {
13
+ constructor() {
14
+ super(...arguments);
15
+ this.name = 'WiggleGetGlobalStats';
80
16
  }
81
17
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
82
- WiggleGetGlobalStats.prototype.deserializeArguments = function (args, rpcDriverClassName) {
83
- return __awaiter(this, void 0, void 0, function () {
84
- var l;
85
- return __generator(this, function (_a) {
86
- switch (_a.label) {
87
- case 0: return [4 /*yield*/, _super.prototype.deserializeArguments.call(this, args, rpcDriverClassName)];
88
- case 1:
89
- l = _a.sent();
90
- return [2 /*return*/, __assign(__assign({}, l), { filters: args.filters
91
- ? new serializableFilterChain_1.default({
92
- filters: args.filters,
93
- })
94
- : undefined })];
95
- }
96
- });
97
- });
98
- };
99
- WiggleGetGlobalStats.prototype.execute = function (args, rpcDriverClassName) {
100
- return __awaiter(this, void 0, void 0, function () {
101
- var deserializedArgs, adapterConfig, sessionId, dataAdapter;
102
- return __generator(this, function (_a) {
103
- switch (_a.label) {
104
- case 0: return [4 /*yield*/, this.deserializeArguments(args, rpcDriverClassName)];
105
- case 1:
106
- deserializedArgs = _a.sent();
107
- adapterConfig = deserializedArgs.adapterConfig, sessionId = deserializedArgs.sessionId;
108
- return [4 /*yield*/, (0, dataAdapterCache_1.getAdapter)(this.pluginManager, sessionId, adapterConfig)
109
- // @ts-ignore
110
- ];
111
- case 2:
112
- dataAdapter = (_a.sent()).dataAdapter;
113
- // @ts-ignore
114
- return [2 /*return*/, dataAdapter.getGlobalStats(deserializedArgs)];
115
- }
116
- });
117
- });
118
- };
119
- return WiggleGetGlobalStats;
120
- }(RpcMethodType_1.default));
18
+ async deserializeArguments(args, rpcDriverClassName) {
19
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
20
+ return {
21
+ ...l,
22
+ filters: args.filters
23
+ ? new serializableFilterChain_1.default({
24
+ filters: args.filters,
25
+ })
26
+ : undefined,
27
+ };
28
+ }
29
+ async execute(args, rpcDriverClassName) {
30
+ const pm = this.pluginManager;
31
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
32
+ const { adapterConfig, sessionId } = deserializedArgs;
33
+ const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
34
+ // @ts-ignore
35
+ return dataAdapter.getGlobalStats(deserializedArgs);
36
+ }
37
+ }
121
38
  exports.WiggleGetGlobalStats = WiggleGetGlobalStats;
122
- var WiggleGetMultiRegionStats = /** @class */ (function (_super) {
123
- __extends(WiggleGetMultiRegionStats, _super);
124
- function WiggleGetMultiRegionStats() {
125
- var _this = _super !== null && _super.apply(this, arguments) || this;
126
- _this.name = 'WiggleGetMultiRegionStats';
127
- return _this;
39
+ class WiggleGetMultiRegionStats extends RpcMethodType_1.default {
40
+ constructor() {
41
+ super(...arguments);
42
+ this.name = 'WiggleGetMultiRegionStats';
128
43
  }
129
44
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
130
- WiggleGetMultiRegionStats.prototype.deserializeArguments = function (args, rpcDriverClassName) {
131
- return __awaiter(this, void 0, void 0, function () {
132
- var l;
133
- return __generator(this, function (_a) {
134
- switch (_a.label) {
135
- case 0: return [4 /*yield*/, _super.prototype.deserializeArguments.call(this, args, rpcDriverClassName)];
136
- case 1:
137
- l = _a.sent();
138
- return [2 /*return*/, __assign(__assign({}, l), { filters: args.filters
139
- ? new serializableFilterChain_1.default({
140
- filters: args.filters,
141
- })
142
- : undefined })];
143
- }
144
- });
145
- });
146
- };
147
- WiggleGetMultiRegionStats.prototype.serializeArguments = function (args, rpcDriverClassName) {
148
- var _a, _b;
149
- return __awaiter(this, void 0, void 0, function () {
150
- var assemblyManager, renamedArgs;
151
- return __generator(this, function (_c) {
152
- switch (_c.label) {
153
- case 0:
154
- assemblyManager = (_b = (_a = this.pluginManager.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
155
- if (!assemblyManager) {
156
- return [2 /*return*/, args];
157
- }
158
- return [4 /*yield*/, (0, util_1.renameRegionsIfNeeded)(assemblyManager, __assign(__assign({}, args), { filters: args.filters && args.filters.toJSON().filters }))];
159
- case 1:
160
- renamedArgs = _c.sent();
161
- return [2 /*return*/, _super.prototype.serializeArguments.call(this, renamedArgs, rpcDriverClassName)];
162
- }
163
- });
164
- });
165
- };
166
- WiggleGetMultiRegionStats.prototype.execute = function (args, rpcDriverClassName) {
167
- return __awaiter(this, void 0, void 0, function () {
168
- var deserializedArgs, regions, adapterConfig, sessionId, dataAdapter;
169
- return __generator(this, function (_a) {
170
- switch (_a.label) {
171
- case 0: return [4 /*yield*/, this.deserializeArguments(args, rpcDriverClassName)];
172
- case 1:
173
- deserializedArgs = _a.sent();
174
- regions = deserializedArgs.regions, adapterConfig = deserializedArgs.adapterConfig, sessionId = deserializedArgs.sessionId;
175
- return [4 /*yield*/, (0, dataAdapterCache_1.getAdapter)(this.pluginManager, sessionId, adapterConfig)];
176
- case 2:
177
- dataAdapter = (_a.sent()).dataAdapter;
178
- if (dataAdapter instanceof BaseAdapter_1.BaseFeatureDataAdapter) {
179
- return [2 /*return*/, dataAdapter.getMultiRegionStats(regions, deserializedArgs)];
180
- }
181
- throw new Error('Data adapter not found');
182
- }
183
- });
45
+ async deserializeArguments(args, rpcDriverClassName) {
46
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
47
+ return {
48
+ ...l,
49
+ filters: args.filters
50
+ ? new serializableFilterChain_1.default({
51
+ filters: args.filters,
52
+ })
53
+ : undefined,
54
+ };
55
+ }
56
+ async serializeArguments(args, rpcDriverClassName) {
57
+ var _a, _b, _c;
58
+ const pm = this.pluginManager;
59
+ const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
60
+ if (!assemblyManager) {
61
+ return args;
62
+ }
63
+ const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
64
+ ...args,
65
+ filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
184
66
  });
185
- };
186
- return WiggleGetMultiRegionStats;
187
- }(RpcMethodType_1.default));
67
+ return super.serializeArguments(renamedArgs, rpcDriverClassName);
68
+ }
69
+ async execute(args, rpcDriverClassName) {
70
+ const pm = this.pluginManager;
71
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
72
+ const { regions, adapterConfig, sessionId } = deserializedArgs;
73
+ const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
74
+ if (dataAdapter instanceof BaseAdapter_1.BaseFeatureDataAdapter) {
75
+ return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
76
+ }
77
+ throw new Error('Data adapter not found');
78
+ }
79
+ }
188
80
  exports.WiggleGetMultiRegionStats = WiggleGetMultiRegionStats;
81
+ class MultiWiggleGetSources extends RpcMethodType_1.default {
82
+ constructor() {
83
+ super(...arguments);
84
+ this.name = 'MultiWiggleGetSources';
85
+ }
86
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
87
+ async deserializeArguments(args, rpcDriverClassName) {
88
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
89
+ return {
90
+ ...l,
91
+ filters: args.filters
92
+ ? new serializableFilterChain_1.default({
93
+ filters: args.filters,
94
+ })
95
+ : undefined,
96
+ };
97
+ }
98
+ async serializeArguments(args, rpcDriverClassName) {
99
+ var _a, _b, _c;
100
+ const pm = this.pluginManager;
101
+ const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
102
+ if (!assemblyManager) {
103
+ return args;
104
+ }
105
+ const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
106
+ ...args,
107
+ filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
108
+ });
109
+ return super.serializeArguments(renamedArgs, rpcDriverClassName);
110
+ }
111
+ async execute(args, rpcDriverClassName) {
112
+ const pm = this.pluginManager;
113
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
114
+ const { regions, adapterConfig, sessionId } = deserializedArgs;
115
+ const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
116
+ // @ts-ignore
117
+ return dataAdapter.getSources(regions, deserializedArgs);
118
+ }
119
+ }
120
+ exports.MultiWiggleGetSources = MultiWiggleGetSources;
189
121
  //# sourceMappingURL=rpcMethods.js.map
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"rpcMethods.js","sourceRoot":"","sources":["../../src/WiggleRPC/rpcMethods.ts"],"names":[],"mappings":";;;;;;AAAA,sGAA6E;AAC7E,yIAAgH;AAChH,mFAAyE;AAEzE,6CAAkE;AAElE,yEAAgF;AAGhF,MAAa,oBAAqB,SAAQ,uBAAa;IAAvD;;QACE,SAAI,GAAG,sBAAsB,CAAA;IAmC/B,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,iCAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAA,6BAAU,EAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF;AApCD,oDAoCC;AAED,MAAa,yBAA0B,SAAQ,uBAAa;IAA5D;;QACE,SAAI,GAAG,2BAA2B,CAAA;IAyDpC,CAAC;IAvDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,iCAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAAsE,EACtE,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,IAAA,4BAAqB,EAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAA,6BAAU,EAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,IAAI,WAAW,YAAY,oCAAsB,EAAE;YACjD,OAAO,WAAW,CAAC,mBAAmB,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;SAClE;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;CACF;AA1DD,8DA0DC;AAED,MAAa,qBAAsB,SAAQ,uBAAa;IAAxD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IAuDhC,CAAC;IArDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,iCAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAAsE,EACtE,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,IAAA,4BAAqB,EAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAA,6BAAU,EAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF;AAxDD,sDAwDC"}
@@ -1,6 +1,6 @@
1
1
  /// <reference types="react" />
2
2
  import { Region } from '@jbrowse/core/util/types';
3
- import { Feature } from '@jbrowse/core/util/simpleFeature';
3
+ import { Feature } from '@jbrowse/core/util';
4
4
  declare function WiggleRendering(props: {
5
5
  regions: Region[];
6
6
  features: Map<string, Feature>;
@@ -1,15 +1,4 @@
1
1
  "use strict";
2
- var __assign = (this && this.__assign) || function () {
3
- __assign = Object.assign || function(t) {
4
- for (var s, i = 1, n = arguments.length; i < n; i++) {
5
- s = arguments[i];
6
- for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
7
- t[p] = s[p];
8
- }
9
- return t;
10
- };
11
- return __assign.apply(this, arguments);
12
- };
13
2
  var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
14
3
  if (k2 === undefined) k2 = k;
15
4
  var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -33,82 +22,40 @@ var __importStar = (this && this.__importStar) || function (mod) {
33
22
  __setModuleDefault(result, mod);
34
23
  return result;
35
24
  };
36
- var __read = (this && this.__read) || function (o, n) {
37
- var m = typeof Symbol === "function" && o[Symbol.iterator];
38
- if (!m) return o;
39
- var i = m.call(o), r, ar = [], e;
40
- try {
41
- while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
42
- }
43
- catch (error) { e = { error: error }; }
44
- finally {
45
- try {
46
- if (r && !r.done && (m = i["return"])) m.call(i);
47
- }
48
- finally { if (e) throw e.error; }
49
- }
50
- return ar;
51
- };
52
- var __values = (this && this.__values) || function(o) {
53
- var s = typeof Symbol === "function" && Symbol.iterator, m = s && o[s], i = 0;
54
- if (m) return m.call(o);
55
- if (o && typeof o.length === "number") return {
56
- next: function () {
57
- if (o && i >= o.length) o = void 0;
58
- return { value: o && o[i++], done: !o };
59
- }
60
- };
61
- throw new TypeError(s ? "Object is not iterable." : "Symbol.iterator is not defined.");
62
- };
63
25
  Object.defineProperty(exports, "__esModule", { value: true });
64
- var mobx_react_1 = require("mobx-react");
65
- var react_1 = __importStar(require("react"));
66
- var ui_1 = require("@jbrowse/core/ui");
26
+ const mobx_react_1 = require("mobx-react");
27
+ const react_1 = __importStar(require("react"));
28
+ const ui_1 = require("@jbrowse/core/ui");
67
29
  function WiggleRendering(props) {
68
- var regions = props.regions, features = props.features, bpPerPx = props.bpPerPx, width = props.width, height = props.height, _a = props.onMouseLeave, onMouseLeave = _a === void 0 ? function () { } : _a, _b = props.onMouseMove, onMouseMove = _b === void 0 ? function () { } : _b, _c = props.onFeatureClick, onFeatureClick = _c === void 0 ? function () { } : _c;
69
- var _d = __read(regions, 1), region = _d[0];
70
- var ref = (0, react_1.useRef)(null);
30
+ const { regions, features, bpPerPx, width, height, onMouseLeave = () => { }, onMouseMove = () => { }, onFeatureClick = () => { }, } = props;
31
+ const [region] = regions;
32
+ const ref = (0, react_1.useRef)(null);
71
33
  function getFeatureUnderMouse(eventClientX) {
72
- var e_1, _a;
73
34
  // calculates feature under mouse
74
- var offset = 0;
35
+ let offset = 0;
75
36
  if (ref.current) {
76
37
  offset = ref.current.getBoundingClientRect().left;
77
38
  }
78
- var offsetX = eventClientX - offset;
79
- var px = region.reversed ? width - offsetX : offsetX;
80
- var clientBp = region.start + bpPerPx * px;
81
- var featureUnderMouse;
82
- try {
83
- for (var _b = __values(features.values()), _c = _b.next(); !_c.done; _c = _b.next()) {
84
- var feature = _c.value;
85
- if (clientBp <= feature.get('end') && clientBp >= feature.get('start')) {
86
- featureUnderMouse = feature;
87
- break;
88
- }
89
- }
90
- }
91
- catch (e_1_1) { e_1 = { error: e_1_1 }; }
92
- finally {
93
- try {
94
- if (_c && !_c.done && (_a = _b.return)) _a.call(_b);
39
+ const offsetX = eventClientX - offset;
40
+ const px = region.reversed ? width - offsetX : offsetX;
41
+ const clientBp = region.start + bpPerPx * px;
42
+ let featureUnderMouse;
43
+ for (const feature of features.values()) {
44
+ // bpPerPx added to the end to accomodate "reduced features" (one feature per px)
45
+ if (clientBp <= feature.get('end') + bpPerPx &&
46
+ clientBp >= feature.get('start')) {
47
+ featureUnderMouse = feature;
48
+ break;
95
49
  }
96
- finally { if (e_1) throw e_1.error; }
97
50
  }
98
51
  return featureUnderMouse;
99
52
  }
100
- return (react_1.default.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: function (event) {
101
- var featureUnderMouse = getFeatureUnderMouse(event.clientX);
102
- onMouseMove(event, featureUnderMouse ? featureUnderMouse.id() : undefined);
103
- }, onClick: function (event) {
104
- var featureUnderMouse = getFeatureUnderMouse(event.clientX);
105
- onFeatureClick(event, featureUnderMouse ? featureUnderMouse.id() : undefined);
106
- }, onMouseLeave: function (event) { return onMouseLeave(event); }, role: "presentation", className: "WiggleRendering", style: {
53
+ return (react_1.default.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: event => { var _a; return onMouseMove(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: event => { var _a; return onFeatureClick(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: event => onMouseLeave(event), style: {
107
54
  overflow: 'visible',
108
55
  position: 'relative',
109
- height: height,
56
+ height,
110
57
  } },
111
- react_1.default.createElement(ui_1.PrerenderedCanvas, __assign({}, props))));
58
+ react_1.default.createElement(ui_1.PrerenderedCanvas, { ...props })));
112
59
  }
113
60
  exports.default = (0, mobx_react_1.observer)(WiggleRendering);
114
61
  //# sourceMappingURL=WiggleRendering.js.map
@@ -1 +1 @@
1
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@@ -1,4 +1,7 @@
1
+ import { Feature } from '@jbrowse/core/util';
1
2
  import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
2
3
  export default class XYPlotRenderer extends WiggleBaseRenderer {
3
- draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<void>;
4
+ draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
5
+ reducedFeatures: Feature[];
6
+ }>;
4
7
  }