@jbrowse/plugin-wiggle 2.0.0 → 2.1.2

package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js

@@ -22,31 +22,15 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var Close_1 = __importDefault(require("@mui/icons-material/Close"));
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     root: {},
     closeButton: {
         position: 'absolute',
@@ -54,17 +38,17 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
         top: theme.spacing(1),
         color: theme.palette.grey[500],
     },
-}); });
+}));
 function SetMinMaxDlg(props) {
-    var classes = useStyles().classes;
-    var model = props.model, handleClose = props.handleClose;
-    var minScore = model.minScore, maxScore = model.maxScore, scaleType = model.scaleType;
-    var _a = __read((0, react_1.useState)("".concat(minScore !== Number.MIN_VALUE ? minScore : '')), 2), min = _a[0], setMin = _a[1];
-    var _b = __read((0, react_1.useState)("".concat(maxScore !== Number.MAX_VALUE ? maxScore : '')), 2), max = _b[0], setMax = _b[1];
-    var ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
+    const { classes } = useStyles();
+    const { model, handleClose } = props;
+    const { minScore, maxScore, scaleType } = model;
+    const [min, setMin] = (0, react_1.useState)(`${minScore !== Number.MIN_VALUE ? minScore : ''}`);
+    const [max, setMax] = (0, react_1.useState)(`${maxScore !== Number.MAX_VALUE ? maxScore : ''}`);
+    const ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
         ? +max > +min
         : true;
-    var logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
+    const logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
     return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose },
         react_1.default.createElement(material_1.DialogTitle, null,
             "Set min/max score for track",
@@ -75,13 +59,13 @@ function SetMinMaxDlg(props) {
                 react_1.default.createElement(material_1.Typography, null, "Enter min/max score: "),
                 !ok ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
                 !logOk ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
-                react_1.default.createElement(material_1.TextField, { value: min, onChange: function (event) {
+                react_1.default.createElement(material_1.TextField, { value: min, onChange: event => {
                         setMin(event.target.value);
                     }, placeholder: "Enter min score" }),
-                react_1.default.createElement(material_1.TextField, { value: max, onChange: function (event) {
+                react_1.default.createElement(material_1.TextField, { value: max, onChange: event => {
                         setMax(event.target.value);
                     }, placeholder: "Enter max score" }),
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: function () {
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: () => {
                         model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
                         model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
                         handleClose();

package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SetMinMaxDialog.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/SetMinMaxDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAQsB;AACtB,uCAA0C;AAC1C,sEAAiD;AAEjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE,EAAE;IACR,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAwB,YAAY,CAAC,KASpC;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAE/C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IACD,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IAED,MAAM,EAAE,GACN,GAAG,KAAK,EAAE,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC;QACpE,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG;QACb,CAAC,CAAC,IAAI,CAAA;IAEV,MAAM,KAAK,GACT,SAAS,KAAK,KAAK,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;IAE5E,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC/B,8BAAC,sBAAW;;YAEV,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,OAAO,EAAE,WAAW;gBAC9D,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa,IAAC,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE;YAC3C,uCAAK,SAAS,EAAE,OAAO,CAAC,IAAI;gBAC1B,8BAAC,qBAAU,gCAAmC;gBAC7C,CAAC,EAAE,CAAC,CAAC,CAAC,CACL,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,0CAEZ,CACd,CAAC,CAAC,CAAC,IAAI;gBAEP,CAAC,KAAK,CAAC,CAAC,CAAC,CACR,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,uDAEZ,CACd,CAAC,CAAC,CAAC,IAAI;gBAER,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBAC5B,CAAC,EACD,WAAW,EAAC,iBAAiB,GAC7B;gBACF,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBAC5B,CAAC,EACD,WAAW,EAAC,iBAAiB,GAC7B;gBAEF,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,EACzB,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;wBACD,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;wBACD,WAAW,EAAE,CAAA;oBACf,CAAC,aAGM,CACL,CACQ,CACT,CACV,CAAA;AACH,CAAC;AAzFD,+BAyFC"}

package/dist/LinearWiggleDisplay/components/Tooltip.d.ts

@@ -1,16 +1,10 @@
 import React from 'react';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { Feature } from '@jbrowse/core/util';
+import Tooltip, { TooltipContentsComponent } from '../../Tooltip';
+declare const TooltipContents: React.ForwardRefExoticComponent<{
+    feature: Feature;
+} & React.RefAttributes<HTMLDivElement>>;
 declare type Coord = [number, number];
-declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, }: {
-    model: {
-        featureUnderMouse: Feature;
-    };
-    height: number;
-    clientMouseCoord: Coord;
-    offsetMouseCoord: Coord;
-    clientRect?: DOMRect | undefined;
-    TooltipContents: React.FC<any>;
-}) => JSX.Element | null;
 declare const WiggleTooltip: (props: {
     model: {
         featureUnderMouse: Feature;
@@ -19,6 +13,7 @@ declare const WiggleTooltip: (props: {
     offsetMouseCoord: Coord;
     clientMouseCoord: Coord;
     clientRect?: DOMRect;
+    TooltipContents?: TooltipContentsComponent;
 }) => JSX.Element;
 export default WiggleTooltip;
 export { Tooltip };

package/dist/LinearWiggleDisplay/components/Tooltip.js

@@ -1,162 +1,40 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Tooltip = void 0;
-var react_1 = __importStar(require("react"));
-var mobx_react_1 = require("mobx-react");
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
+const react_1 = __importDefault(require("react"));
+const mobx_react_1 = require("mobx-react");
 // locals
-var model_1 = require("../models/model");
-var react_popper_1 = require("react-popper");
-// convert to number, apply shortened precision, and render
-function toP(s) {
-    if (s === void 0) { s = 0; }
-    return +(+s).toPrecision(6);
-}
-function round(value) {
-    return Math.round(value * 1e5) / 1e5;
-}
-var en = function (n) { return n.toLocaleString('en-US'); };
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
-    // these styles come from
-    // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
-    tooltip: {
-        position: 'absolute',
-        pointerEvents: 'none',
-        backgroundColor: (0, material_1.alpha)(theme.palette.grey[700], 0.9),
-        borderRadius: theme.shape.borderRadius,
-        color: theme.palette.common.white,
-        fontFamily: theme.typography.fontFamily,
-        padding: '4px 8px',
-        fontSize: theme.typography.pxToRem(12),
-        lineHeight: "".concat(round(14 / 10), "em"),
-        maxWidth: 300,
-        wordWrap: 'break-word',
-    },
-    hoverVertical: {
-        background: '#333',
-        border: 'none',
-        width: 1,
-        height: '100%',
-        top: model_1.YSCALEBAR_LABEL_OFFSET,
-        cursor: 'default',
-        position: 'absolute',
-        pointerEvents: 'none',
-    },
-}); });
-var TooltipContents = react_1.default.forwardRef(function (_a, ref) {
-    var feature = _a.feature;
-    var start = feature.get('start');
-    var end = feature.get('end');
-    var name = feature.get('refName');
-    var loc = [name, start === end ? en(start) : "".concat(en(start), "..").concat(en(end))]
-        .filter(function (f) { return !!f; })
+const Tooltip_1 = __importDefault(require("../../Tooltip"));
+exports.Tooltip = Tooltip_1.default;
+const util_1 = require("../../util");
+const en = (n) => n.toLocaleString('en-US');
+const TooltipContents = react_1.default.forwardRef(({ feature }, ref) => {
+    const start = feature.get('start');
+    const end = feature.get('end');
+    const name = feature.get('refName');
+    const loc = [name, start === end ? en(start) : `${en(start)}..${en(end)}`]
+        .filter(f => !!f)
         .join(':');
     return feature.get('summary') !== undefined ? (react_1.default.createElement("div", { ref: ref },
         loc,
         react_1.default.createElement("br", null),
         "Max: ",
-        toP(feature.get('maxScore')),
+        (0, util_1.toP)(feature.get('maxScore')),
         react_1.default.createElement("br", null),
         "Avg: ",
-        toP(feature.get('score')),
+        (0, util_1.toP)(feature.get('score')),
         react_1.default.createElement("br", null),
         "Min: ",
-        toP(feature.get('minScore')))) : (react_1.default.createElement("div", { ref: ref },
+        (0, util_1.toP)(feature.get('minScore')))) : (react_1.default.createElement("div", { ref: ref },
         loc,
-        react_1.default.createElement("br", null), "".concat(toP(feature.get('score')))));
-});
-var Tooltip = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model, height = _a.height, clientMouseCoord = _a.clientMouseCoord, offsetMouseCoord = _a.offsetMouseCoord, clientRect = _a.clientRect, TooltipContents = _a.TooltipContents;
-    var featureUnderMouse = model.featureUnderMouse;
-    var _b = __read((0, react_1.useState)(0), 2), width = _b[0], setWidth = _b[1];
-    var _c = __read((0, react_1.useState)(null), 2), anchorEl = _c[0], setAnchorEl = _c[1];
-    var classes = useStyles().classes;
-    // must be memoized a la https://github.com/popperjs/react-popper/issues/391
-    var virtElement = (0, react_1.useMemo)(function () { return ({
-        getBoundingClientRect: function () {
-            var x = clientMouseCoord[0] + width / 2 + 20;
-            var y = (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
-            return {
-                top: y,
-                left: x,
-                bottom: y,
-                right: x,
-                width: 0,
-                height: 0,
-                x: x,
-                y: y,
-                toJSON: function () { },
-            };
-        },
-    }); }, [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width]);
-    var _d = (0, react_popper_1.usePopper)(virtElement, anchorEl), styles = _d.styles, attributes = _d.attributes;
-    return featureUnderMouse ? (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(material_1.Portal, null,
-            react_1.default.createElement("div", __assign({ ref: setAnchorEl, className: classes.tooltip, 
-                // zIndex needed to go over widget drawer
-                style: __assign(__assign({}, styles.popper), { zIndex: 100000 }) }, attributes.popper),
-                react_1.default.createElement(TooltipContents, { ref: function (elt) {
-                        setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
-                    }, feature: featureUnderMouse }))),
-        react_1.default.createElement("div", { className: classes.hoverVertical, style: {
-                left: offsetMouseCoord[0],
-                height: height - model_1.YSCALEBAR_LABEL_OFFSET * 2,
-            } }))) : null;
+        react_1.default.createElement("br", null),
+        `${(0, util_1.toP)(feature.get('score'))}`));
 });
-exports.Tooltip = Tooltip;
-var WiggleTooltip = (0, mobx_react_1.observer)(function (props) {
-    return react_1.default.createElement(Tooltip, __assign({ TooltipContents: TooltipContents }, props));
+const WiggleTooltip = (0, mobx_react_1.observer)((props) => {
+    return react_1.default.createElement(Tooltip_1.default, { TooltipContents: TooltipContents, ...props });
 });
 exports.default = WiggleTooltip;
 //# sourceMappingURL=Tooltip.js.map

package/dist/LinearWiggleDisplay/components/Tooltip.js.map

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package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js

@@ -1,43 +1,32 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.YScaleBar = void 0;
-var react_1 = __importDefault(require("react"));
-var util_1 = require("@jbrowse/core/util");
-var configuration_1 = require("@jbrowse/core/configuration");
-var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-var mobx_react_1 = require("mobx-react");
-var YScaleBar_1 = __importDefault(require("./YScaleBar"));
+const react_1 = __importDefault(require("react"));
+const util_1 = require("@jbrowse/core/util");
+const configuration_1 = require("@jbrowse/core/configuration");
+const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+const mobx_react_1 = require("mobx-react");
+const YScaleBar_1 = __importDefault(require("./YScaleBar"));
 exports.YScaleBar = YScaleBar_1.default;
-var LinearWiggleDisplay = (0, mobx_react_1.observer)(function (props) {
-    var model = props.model;
-    var stats = model.stats, height = model.height, needsScalebar = model.needsScalebar;
-    var trackLabels = (0, util_1.getContainingView)(model).trackLabels;
-    var track = (0, util_1.getContainingTrack)(model);
-    var left = trackLabels === 'overlapping'
+const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
+    const { model } = props;
+    const { stats, height, needsScalebar } = model;
+    const { trackLabels } = (0, util_1.getContainingView)(model);
+    const track = (0, util_1.getContainingTrack)(model);
+    const left = trackLabels === 'overlapping'
         ? (0, util_1.measureText)((0, configuration_1.getConf)(track, 'name'), 12.8) + 100
         : 50;
     return (react_1.default.createElement("div", null,
-        react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, __assign({}, props)),
+        react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
         stats && needsScalebar ? (react_1.default.createElement("svg", { style: {
                 position: 'absolute',
                 top: 0,
-                left: left,
+                left,
                 pointerEvents: 'none',
-                height: height,
+                height,
                 width: 50,
             } },
             react_1.default.createElement(YScaleBar_1.default, { model: model }))) : null));

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -1 +1 @@
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+{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAI2B;AAC3B,+DAAqD;AACrD,kFAG2C;AAC3C,2CAAqC;AAErC,4DAAmC;AAqC1B,oBArCF,mBAAS,CAqCE;AAjClB,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,IAAA,kBAAW,EAAC,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,8BAAC,sDAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}

package/dist/LinearWiggleDisplay/components/YScaleBar.js

@@ -1,26 +1,14 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var mobx_react_1 = require("mobx-react");
-var react_d3_axis_mod_1 = require("react-d3-axis-mod");
-var YScaleBar = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model, orientation = _a.orientation;
-    var ticks = model.ticks;
-    return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, __assign({}, ticks, { shadow: 2, format: function (n) { return n; }, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT } }))) : null;
+const react_1 = __importDefault(require("react"));
+const mobx_react_1 = require("mobx-react");
+const react_d3_axis_mod_1 = require("react-d3-axis-mod");
+const YScaleBar = (0, mobx_react_1.observer)(({ model, orientation, }) => {
+    const { ticks } = model;
+    return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, { ...ticks, shadow: 2, format: (n) => n, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT } })) : null;
 });
 exports.default = YScaleBar;
 //# sourceMappingURL=YScaleBar.js.map

package/dist/LinearWiggleDisplay/components/YScaleBar.js.map

@@ -1 +1 @@
-{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/YScaleBar.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,uDAAqD;AAGrD,IAAM,SAAS,GAAG,IAAA,qBAAQ,EACxB,UAAC,EAMA;QALC,KAAK,WAAA,EACL,WAAW,iBAAA;IAKH,IAAA,KAAK,GAAK,KAAK,MAAV,CAAU;IAEvB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,eACC,KAAK,IACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,UAAC,CAAS,IAAK,OAAA,CAAC,EAAD,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,IACxD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AACD,kBAAe,SAAS,CAAA"}
+{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/YScaleBar.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,yDAAqD;AAGrD,MAAM,SAAS,GAAG,IAAA,qBAAQ,EACxB,CAAC,EACC,KAAK,EACL,WAAW,GAIZ,EAAE,EAAE;IACH,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,OACC,KAAK,EACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,GACxD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AACD,kBAAe,SAAS,CAAA"}

package/dist/LinearWiggleDisplay/index.d.ts

@@ -1,3 +1,7 @@
-export { default as configSchemaFactory } from './models/configSchema';
-export { default as modelFactory, YSCALEBAR_LABEL_OFFSET } from './models/model';
-export { default as ReactComponent } from './components/WiggleDisplayComponent';
+import PluginManager from '@jbrowse/core/PluginManager';
+import modelFactory from './models/model';
+import ReactComponent from './components/WiggleDisplayComponent';
+import Tooltip from './components/Tooltip';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;
+export { ReactComponent, modelFactory, Tooltip };

package/dist/LinearWiggleDisplay/index.js

@@ -3,12 +3,27 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ReactComponent = exports.YSCALEBAR_LABEL_OFFSET = exports.modelFactory = exports.configSchemaFactory = void 0;
-var configSchema_1 = require("./models/configSchema");
-Object.defineProperty(exports, "configSchemaFactory", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
-var model_1 = require("./models/model");
-Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
-Object.defineProperty(exports, "YSCALEBAR_LABEL_OFFSET", { enumerable: true, get: function () { return model_1.YSCALEBAR_LABEL_OFFSET; } });
-var WiggleDisplayComponent_1 = require("./components/WiggleDisplayComponent");
-Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(WiggleDisplayComponent_1).default; } });
+exports.Tooltip = exports.modelFactory = exports.ReactComponent = void 0;
+const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
+const configSchema_1 = __importDefault(require("./models/configSchema"));
+const model_1 = __importDefault(require("./models/model"));
+exports.modelFactory = model_1.default;
+const WiggleDisplayComponent_1 = __importDefault(require("./components/WiggleDisplayComponent"));
+exports.ReactComponent = WiggleDisplayComponent_1.default;
+const Tooltip_1 = __importDefault(require("./components/Tooltip"));
+exports.Tooltip = Tooltip_1.default;
+exports.default = (pluginManager) => {
+    pluginManager.addDisplayType(() => {
+        const configSchema = (0, configSchema_1.default)(pluginManager);
+        const stateModel = (0, model_1.default)(pluginManager, configSchema);
+        return new DisplayType_1.default({
+            name: 'LinearWiggleDisplay',
+            configSchema,
+            stateModel,
+            trackType: 'QuantitativeTrack',
+            viewType: 'LinearGenomeView',
+            ReactComponent: WiggleDisplayComponent_1.default,
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/dist/LinearWiggleDisplay/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AAmBhB,uBAnBlB,eAAY,CAmBkB;AAlBrC,iGAAgE;AAkBvD,yBAlBF,gCAAc,CAkBE;AAjBvB,mEAA0C;AAiBH,kBAjBhC,iBAAO,CAiBgC;AAf9C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,MAAM,UAAU,GAAG,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC,CAAA;QAC5D,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,YAAY;YACZ,UAAU;YACV,SAAS,EAAE,mBAAmB;YAC9B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/LinearWiggleDisplay/models/configSchema.js

@@ -1,12 +1,12 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-var configuration_1 = require("@jbrowse/core/configuration");
-var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-var mobx_state_tree_1 = require("mobx-state-tree");
+const configuration_1 = require("@jbrowse/core/configuration");
+const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+const mobx_state_tree_1 = require("mobx-state-tree");
 function WiggleConfigFactory(pluginManager) {
-    var XYPlotRendererConfigSchema = pluginManager.getRendererType('XYPlotRenderer').configSchema;
-    var DensityRendererConfigSchema = pluginManager.getRendererType('DensityRenderer').configSchema;
-    var LinePlotRendererConfigSchema = pluginManager.getRendererType('LinePlotRenderer').configSchema;
+    const XYPlotRendererConfigSchema = pluginManager.getRendererType('XYPlotRenderer').configSchema;
+    const DensityRendererConfigSchema = pluginManager.getRendererType('DensityRenderer').configSchema;
+    const LinePlotRendererConfigSchema = pluginManager.getRendererType('LinePlotRenderer').configSchema;
     return (0, configuration_1.ConfigurationSchema)('LinearWiggleDisplay', {
         autoscale: {
             type: 'stringEnum',

package/dist/LinearWiggleDisplay/models/configSchema.js.map

@@ -1 +1 @@
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+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,kFAAkF;AAClF,qDAAuC;AAGvC,SAAwB,mBAAmB,CAAC,aAA4B;IACtE,MAAM,0BAA0B,GAC9B,aAAa,CAAC,eAAe,CAAC,gBAAgB,CAAC,CAAC,YAAY,CAAA;IAC9D,MAAM,2BAA2B,GAC/B,aAAa,CAAC,eAAe,CAAC,iBAAiB,CAAC,CAAC,YAAY,CAAA;IAC/D,MAAM,4BAA4B,GAChC,aAAa,CAAC,eAAe,CAAC,kBAAkB,CAAC,CAAC,YAAY,CAAA;IAEhE,OAAO,IAAA,mCAAmB,EACxB,qBAAqB,EACrB;QACE,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,YAAY,EAAE,OAAO;YACrB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,gBAAgB,EAAE;gBACzC,QAAQ;gBACR,OAAO;gBACP,UAAU;gBACV,SAAS;gBACT,QAAQ;aACT,CAAC;YACF,WAAW,EACT,sFAAsF;SACzF;QACD,YAAY,EAAE;YACZ,IAAI,EAAE,SAAS;YACf,YAAY,EAAE,KAAK;YACnB,WAAW,EAAE,iCAAiC;SAC/C;QAED,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,MAAM,CAAC,SAAS;YAC9B,WAAW,EAAE,+BAA+B;SAC7C;QACD,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,WAAW,EAAE,+BAA+B;YAC5C,YAAY,EAAE,MAAM,CAAC,SAAS;SAC/B;QACD,SAAS,EAAE;YACT,IAAI,EAAE,QAAQ;YACd,WAAW,EACT,8EAA8E;YAChF,YAAY,EAAE,CAAC;SAChB;QACD,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;YACzD,WAAW,EAAE,0BAA0B;YACvC,YAAY,EAAE,QAAQ;SACvB;QACD,QAAQ,EAAE;YACR,IAAI,EAAE,SAAS;YACf,WAAW,EAAE,kBAAkB;YAC/B,YAAY,EAAE,KAAK;SACpB;QAED,gBAAgB,EAAE;YAChB,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;YACpE,YAAY,EAAE,QAAQ;SACvB;QAED,SAAS,EAAE,IAAA,mCAAmB,EAAC,wBAAwB,EAAE;YACvD,eAAe,EAAE,2BAA2B;YAC5C,cAAc,EAAE,0BAA0B;YAC1C,gBAAgB,EAAE,4BAA4B;SAC/C,CAAC;KACH,EACD,EAAE,iBAAiB,EAAE,yDAA6B,EAAE,eAAe,EAAE,IAAI,EAAE,CAC5E,CAAA;AACH,CAAC;AAxED,sCAwEC"}

package/dist/LinearWiggleDisplay/models/model.d.ts

@@ -3,7 +3,6 @@ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { Feature } from '@jbrowse/core/util/simpleFeature';
-export declare const YSCALEBAR_LABEL_OFFSET = 5;
 declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -64,6 +63,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -209,7 +209,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     };
     statsFetchInProgress: AbortController | undefined;
 } & {
-    updateStats({ scoreMin, scoreMax, }: {
+    updateStats(stats: {
         scoreMin: number;
         scoreMax: number;
     }): void;
@@ -219,7 +219,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     setLoading(aborter: AbortController): void;
     selectFeature(feature: Feature): void;
     setResolution(res: number): void;
-    setFill(fill: boolean): void;
+    setFill(fill: number): void;
     toggleLogScale(): void;
     setScaleType(scale?: string): void;
     setSummaryScoreMode(val: string): void;
@@ -232,6 +232,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
 } & {
     readonly TooltipComponent: React.FC<{}>;
     readonly adapterTypeName: any;
+    readonly rendererTypeNameSimple: any;
     readonly rendererTypeName: string;
     readonly filters: undefined;
     readonly scaleType: any;
@@ -258,18 +259,36 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     readonly autoscaleType: any;
     readonly displayCrossHatchesSetting: any;
 } & {
-    readonly ticks: any;
+    readonly ticks: {
+        range: number[];
+        values: number[];
+        format: (d: import("d3-scale").NumberValue) => string;
+        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+    };
+    readonly adapterCapabilities: string[];
 } & {
     renderProps(): any;
-    readonly adapterCapabilities: string[];
     readonly hasResolution: boolean;
     readonly hasGlobalStats: boolean;
+    readonly fillSetting: 2 | 1 | 0;
 } & {
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+        type?: undefined;
+        checked?: undefined;
+        onClick?: undefined;
+    } | {
         type: string;
         label: string;
         checked: any;
         onClick: () => void;
+        subMenu?: undefined;
     })[];
 } & {
     reload(): Promise<void>;