@jbrowse/plugin-variants 3.7.0 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/ChordVariantDisplay/components/ChordVariantDisplay.d.ts +11 -0
- package/esm/ChordVariantDisplay/components/ChordVariantDisplay.js +16 -0
- package/esm/ChordVariantDisplay/components/DisplayError.d.ts +9 -0
- package/esm/ChordVariantDisplay/components/DisplayError.js +7 -0
- package/esm/ChordVariantDisplay/components/Loading.d.ts +8 -0
- package/esm/ChordVariantDisplay/components/Loading.js +28 -0
- package/esm/ChordVariantDisplay/index.js +4 -4
- package/esm/ChordVariantDisplay/models/configSchema.d.ts +4 -5
- package/esm/ChordVariantDisplay/models/configSchema.js +10 -5
- package/esm/ChordVariantDisplay/models/renderReaction.d.ts +30 -0
- package/esm/ChordVariantDisplay/models/renderReaction.js +48 -0
- package/esm/ChordVariantDisplay/models/renderSvg.d.ts +6 -0
- package/esm/ChordVariantDisplay/models/renderSvg.js +12 -0
- package/esm/ChordVariantDisplay/models/stateModelFactory.d.ts +535 -46
- package/esm/ChordVariantDisplay/models/stateModelFactory.js +146 -8
- package/esm/LinearVariantDisplay/configSchema.d.ts +5 -5
- package/esm/LinearVariantDisplay/configSchema.js +2 -2
- package/esm/LinearVariantDisplay/index.js +6 -4
- package/esm/LinearVariantDisplay/model.d.ts +1086 -103
- package/esm/LinearVariantDisplay/model.js +10 -26
- package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +8 -18
- package/esm/MultiLinearVariantDisplay/configSchema.d.ts +6 -44
- package/esm/MultiLinearVariantDisplay/configSchema.js +2 -2
- package/esm/MultiLinearVariantDisplay/index.js +4 -3
- package/esm/MultiLinearVariantDisplay/model.d.ts +1031 -125
- package/esm/MultiLinearVariantDisplay/model.js +3 -23
- package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearVariantDisplay/renderSvg.js +4 -4
- package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +8 -2
- package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +26 -23
- package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +9 -20
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +6 -6
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/index.js +5 -4
- package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +1110 -131
- package/esm/MultiLinearVariantMatrixDisplay/model.js +22 -48
- package/esm/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/renderSvg.js +3 -3
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +4 -35
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +19 -33
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +12 -1
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +48 -22
- package/esm/MultiLinearVariantMatrixRenderer/configSchema.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixRenderer/index.js +4 -4
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +10 -2
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +155 -135
- package/esm/MultiLinearVariantMatrixRenderer/types.d.ts +2 -14
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +3 -60
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +9 -18
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +7 -6
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +30 -26
- package/esm/MultiLinearVariantRenderer/configSchema.d.ts +1 -1
- package/esm/MultiLinearVariantRenderer/index.js +4 -4
- package/esm/MultiLinearVariantRenderer/makeImageData.d.ts +14 -11
- package/esm/MultiLinearVariantRenderer/makeImageData.js +127 -110
- package/esm/MultiLinearVariantRenderer/types.d.ts +3 -20
- package/esm/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +1 -1
- package/esm/SplitVcfTabixAdapter/configSchema.d.ts +2 -2
- package/esm/SplitVcfTabixAdapter/index.d.ts +1 -1
- package/esm/SplitVcfTabixAdapter/index.js +3 -3
- package/esm/StructuralVariantChordRenderer/Chord.d.ts +1 -1
- package/esm/StructuralVariantChordRenderer/Chord.js +41 -58
- package/esm/StructuralVariantChordRenderer/ReactComponent.d.ts +3 -3
- package/esm/StructuralVariantChordRenderer/ReactComponent.js +3 -3
- package/esm/StructuralVariantChordRenderer/configSchema.d.ts +2 -2
- package/esm/StructuralVariantChordRenderer/index.js +3 -3
- package/esm/Tooltip.js +2 -2
- package/esm/VariantFeatureWidget/AltFormatter.js +1 -1
- package/esm/VariantFeatureWidget/Formatter.js +2 -2
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.d.ts +1 -0
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.js +1 -0
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +1 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +8 -23
- package/esm/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +1 -1
- package/esm/VariantFeatureWidget/VariantFeatureWidget.d.ts +1 -1
- package/esm/VariantFeatureWidget/VariantFeatureWidget.js +16 -29
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +5 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +68 -59
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +13 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +1 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +72 -30
- package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +2 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +49 -26
- package/esm/VariantFeatureWidget/VariantSampleGrid/types.d.ts +3 -5
- package/esm/VariantFeatureWidget/configSchema.d.ts +1 -1
- package/esm/VariantFeatureWidget/index.js +3 -3
- package/esm/VariantFeatureWidget/stateModelFactory.d.ts +39 -39
- package/esm/VariantFeatureWidget/stateModelFactory.js +1 -1
- package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +2 -7
- package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.js +3 -14
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +4 -2
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +2 -5
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +2 -2
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +34 -19
- package/esm/VariantRPC/MultiVariantGetSources.js +2 -6
- package/esm/VariantRPC/executeClusterGenotypeMatrix.d.ts +22 -0
- package/esm/VariantRPC/executeClusterGenotypeMatrix.js +19 -0
- package/esm/VariantRPC/getGenotypeMatrix.d.ts +18 -3
- package/esm/VariantRPC/getGenotypeMatrix.js +23 -40
- package/esm/VariantRPC/types.d.ts +10 -24
- package/esm/VariantTrack/configSchema.d.ts +16 -11
- package/esm/VariantTrack/index.js +13 -2
- package/esm/VariantTrack/saveTrackFormats/vcf.d.ts +4 -0
- package/esm/VariantTrack/saveTrackFormats/vcf.js +15 -0
- package/esm/VcfAdapter/VcfAdapter.d.ts +6 -3
- package/esm/VcfAdapter/VcfAdapter.js +36 -24
- package/esm/VcfAdapter/configSchema.d.ts +2 -2
- package/esm/VcfAdapter/index.js +3 -2
- package/esm/VcfExtensionPoints/index.d.ts +2 -0
- package/esm/{extensionPoints.js → VcfExtensionPoints/index.js} +1 -1
- package/esm/VcfFeature/index.js +20 -8
- package/esm/VcfFeature/util.d.ts +0 -1
- package/esm/VcfFeature/util.js +70 -188
- package/esm/VcfTabixAdapter/VcfTabixAdapter.d.ts +2 -0
- package/esm/VcfTabixAdapter/VcfTabixAdapter.js +28 -3
- package/esm/VcfTabixAdapter/configSchema.d.ts +5 -5
- package/esm/VcfTabixAdapter/configSchema.js +1 -1
- package/esm/VcfTabixAdapter/index.d.ts +1 -1
- package/esm/VcfTabixAdapter/index.js +4 -3
- package/esm/d3-hierarchy2/accessors.d.ts +2 -0
- package/esm/d3-hierarchy2/accessors.js +8 -0
- package/esm/d3-hierarchy2/array.d.ts +2 -0
- package/esm/d3-hierarchy2/array.js +15 -0
- package/esm/d3-hierarchy2/cluster.d.ts +8 -0
- package/esm/d3-hierarchy2/cluster.js +63 -0
- package/esm/d3-hierarchy2/constant.d.ts +2 -0
- package/esm/d3-hierarchy2/constant.js +8 -0
- package/esm/d3-hierarchy2/hierarchy/ancestors.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/ancestors.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/count.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/count.js +12 -0
- package/esm/d3-hierarchy2/hierarchy/descendants.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/descendants.js +3 -0
- package/esm/d3-hierarchy2/hierarchy/each.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/each.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/eachAfter.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/eachAfter.js +15 -0
- package/esm/d3-hierarchy2/hierarchy/eachBefore.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/eachBefore.js +12 -0
- package/esm/d3-hierarchy2/hierarchy/find.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/find.js +8 -0
- package/esm/d3-hierarchy2/hierarchy/index.d.ts +3 -0
- package/esm/d3-hierarchy2/hierarchy/index.js +78 -0
- package/esm/d3-hierarchy2/hierarchy/iterator.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/iterator.js +14 -0
- package/esm/d3-hierarchy2/hierarchy/leaves.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/leaves.js +9 -0
- package/esm/d3-hierarchy2/hierarchy/links.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/links.js +9 -0
- package/esm/d3-hierarchy2/hierarchy/path.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/path.js +26 -0
- package/esm/d3-hierarchy2/hierarchy/sort.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/sort.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/sum.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/sum.js +8 -0
- package/esm/d3-hierarchy2/index.d.ts +15 -0
- package/esm/d3-hierarchy2/index.js +15 -0
- package/esm/d3-hierarchy2/lcg.d.ts +1 -0
- package/esm/d3-hierarchy2/lcg.js +7 -0
- package/esm/d3-hierarchy2/pack/enclose.d.ts +10 -0
- package/esm/d3-hierarchy2/pack/enclose.js +84 -0
- package/esm/d3-hierarchy2/pack/index.d.ts +7 -0
- package/esm/d3-hierarchy2/pack/index.js +68 -0
- package/esm/d3-hierarchy2/pack/siblings.d.ts +2 -0
- package/esm/d3-hierarchy2/pack/siblings.js +94 -0
- package/esm/d3-hierarchy2/partition.d.ts +6 -0
- package/esm/d3-hierarchy2/partition.js +42 -0
- package/esm/d3-hierarchy2/stratify.d.ts +9 -0
- package/esm/d3-hierarchy2/stratify.js +115 -0
- package/esm/d3-hierarchy2/tree.d.ts +8 -0
- package/esm/d3-hierarchy2/tree.js +153 -0
- package/esm/d3-hierarchy2/treemap/binary.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/binary.js +36 -0
- package/esm/d3-hierarchy2/treemap/dice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/dice.js +7 -0
- package/esm/d3-hierarchy2/treemap/index.d.ts +17 -0
- package/esm/d3-hierarchy2/treemap/index.js +72 -0
- package/esm/d3-hierarchy2/treemap/resquarify.d.ts +5 -0
- package/esm/d3-hierarchy2/treemap/resquarify.js +28 -0
- package/esm/d3-hierarchy2/treemap/round.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/round.js +6 -0
- package/esm/d3-hierarchy2/treemap/slice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/slice.js +7 -0
- package/esm/d3-hierarchy2/treemap/sliceDice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/sliceDice.js +5 -0
- package/esm/d3-hierarchy2/treemap/squarify.d.ts +11 -0
- package/esm/d3-hierarchy2/treemap/squarify.js +46 -0
- package/esm/index.d.ts +1 -1
- package/esm/index.js +19 -22
- package/esm/shared/MultiVariantBaseModel.d.ts +1103 -117
- package/esm/shared/MultiVariantBaseModel.js +231 -65
- package/esm/shared/SharedVariantConfigSchema.d.ts +2 -40
- package/esm/shared/SharedVariantConfigSchema.js +1 -46
- package/esm/shared/components/AddFiltersDialog.d.ts +2 -3
- package/esm/shared/components/AddFiltersDialog.js +20 -28
- package/esm/shared/components/{ui/SetColorDialog.d.ts → BaseSetColorDialog.d.ts} +2 -1
- package/esm/shared/components/BaseSetColorDialog.js +61 -0
- package/esm/shared/components/ClearTreeWarningDialog.d.ts +4 -0
- package/esm/shared/components/ClearTreeWarningDialog.js +9 -0
- package/esm/shared/components/MAFFilterDialog.d.ts +2 -3
- package/esm/shared/components/MAFFilterDialog.js +4 -8
- package/esm/shared/components/MultiVariantBaseDisplayComponent.d.ts +1 -1
- package/esm/shared/components/MultiVariantBaseDisplayComponent.js +8 -17
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.js +3 -3
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +9 -14
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +11 -15
- package/esm/shared/components/MultiVariantClusterDialog/types.d.ts +3 -2
- package/esm/shared/components/MultiVariantColorLegend.d.ts +1 -1
- package/esm/shared/components/MultiVariantColorLegend.js +22 -12
- package/esm/shared/components/MultiVariantCrosshairs.d.ts +4 -2
- package/esm/shared/components/MultiVariantCrosshairs.js +31 -23
- package/esm/shared/components/MultiVariantLegendBar.d.ts +4 -4
- package/esm/shared/components/MultiVariantLegendBar.js +24 -22
- package/esm/shared/components/MultiVariantLegendBarWrapper.d.ts +7 -0
- package/esm/shared/components/MultiVariantLegendBarWrapper.js +18 -0
- package/esm/shared/components/MultiVariantTooltip.d.ts +5 -6
- package/esm/shared/components/MultiVariantTooltip.js +35 -17
- package/esm/shared/components/ScrollableVariantContainer.d.ts +8 -0
- package/esm/shared/components/ScrollableVariantContainer.js +23 -0
- package/esm/shared/components/SetColorDialog.d.ts +3 -2
- package/esm/shared/components/SetColorDialog.js +2 -2
- package/esm/shared/components/SetColorDialogBulkEditPanel.d.ts +7 -8
- package/esm/shared/components/SetColorDialogBulkEditPanel.js +24 -54
- package/esm/shared/components/SetColorDialogRowPalettizer.js +13 -23
- package/esm/shared/components/SetRowHeightDialog.d.ts +2 -3
- package/esm/shared/components/SourcesDataGrid.d.ts +1 -1
- package/esm/shared/components/SourcesDataGrid.js +1 -1
- package/esm/shared/components/SourcesGrid.d.ts +1 -1
- package/esm/shared/components/SourcesGrid.js +2 -2
- package/esm/shared/components/SourcesGridHeader.d.ts +1 -1
- package/esm/shared/components/SourcesGridHeader.js +1 -1
- package/esm/shared/components/SvgTree.d.ts +5 -0
- package/esm/shared/components/SvgTree.js +19 -0
- package/esm/shared/components/TreeSidebar.d.ts +5 -0
- package/esm/shared/components/TreeSidebar.js +121 -0
- package/esm/shared/components/types.d.ts +43 -0
- package/esm/shared/components/types.js +1 -0
- package/esm/shared/constants.d.ts +8 -2
- package/esm/shared/constants.js +11 -2
- package/esm/shared/drawAlleleCount.d.ts +2 -1
- package/esm/shared/drawAlleleCount.js +50 -16
- package/esm/shared/drawPhased.js +11 -12
- package/{dist → esm/shared}/getMultiVariantFeaturesAutorun.d.ts +5 -4
- package/esm/{getMultiVariantFeaturesAutorun.js → shared/getMultiVariantFeaturesAutorun.js} +9 -2
- package/esm/{getMultiVariantSourcesAutorun.d.ts → shared/getMultiVariantSourcesAutorun.d.ts} +4 -3
- package/esm/{getMultiVariantSourcesAutorun.js → shared/getMultiVariantSourcesAutorun.js} +10 -2
- package/esm/shared/getSources.d.ts +1 -1
- package/esm/shared/getSources.js +2 -2
- package/esm/shared/hooks/useMouseTracking.d.ts +6 -0
- package/esm/shared/hooks/useMouseTracking.js +34 -0
- package/esm/shared/makeSidebarSvg.d.ts +9 -0
- package/esm/shared/makeSidebarSvg.js +9 -0
- package/esm/shared/minorAlleleFrequencyUtils.d.ts +6 -5
- package/esm/shared/minorAlleleFrequencyUtils.js +37 -38
- package/esm/shared/setupMultiVariantAutoruns.d.ts +2 -0
- package/esm/shared/setupMultiVariantAutoruns.js +8 -0
- package/esm/shared/treeDrawingAutorun.d.ts +16 -0
- package/esm/shared/treeDrawingAutorun.js +71 -0
- package/esm/shared/types.d.ts +15 -0
- package/package.json +38 -39
- package/dist/ChordVariantDisplay/index.d.ts +0 -2
- package/dist/ChordVariantDisplay/index.js +0 -25
- package/dist/ChordVariantDisplay/models/configSchema.d.ts +0 -12
- package/dist/ChordVariantDisplay/models/configSchema.js +0 -15
- package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts +0 -115
- package/dist/ChordVariantDisplay/models/stateModelFactory.js +0 -35
- package/dist/LinearVariantDisplay/configSchema.d.ts +0 -34
- package/dist/LinearVariantDisplay/configSchema.js +0 -12
- package/dist/LinearVariantDisplay/index.d.ts +0 -2
- package/dist/LinearVariantDisplay/index.js +0 -24
- package/dist/LinearVariantDisplay/model.d.ts +0 -278
- package/dist/LinearVariantDisplay/model.js +0 -37
- package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +0 -29
- package/dist/MultiLinearVariantDisplay/configSchema.d.ts +0 -80
- package/dist/MultiLinearVariantDisplay/configSchema.js +0 -30
- package/dist/MultiLinearVariantDisplay/index.d.ts +0 -2
- package/dist/MultiLinearVariantDisplay/index.js +0 -57
- package/dist/MultiLinearVariantDisplay/model.d.ts +0 -422
- package/dist/MultiLinearVariantDisplay/model.js +0 -82
- package/dist/MultiLinearVariantDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearVariantDisplay/renderSvg.js +0 -15
- package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +0 -6
- package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +0 -83
- package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +0 -31
- package/dist/MultiLinearVariantMatrixDisplay/configSchema.d.ts +0 -37
- package/dist/MultiLinearVariantMatrixDisplay/configSchema.js +0 -22
- package/dist/MultiLinearVariantMatrixDisplay/index.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixDisplay/index.js +0 -24
- package/dist/MultiLinearVariantMatrixDisplay/model.d.ts +0 -431
- package/dist/MultiLinearVariantMatrixDisplay/model.js +0 -125
- package/dist/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearVariantMatrixDisplay/renderSvg.js +0 -17
- package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +0 -37
- package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +0 -87
- package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +0 -8
- package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +0 -41
- package/dist/MultiLinearVariantMatrixRenderer/configSchema.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixRenderer/configSchema.js +0 -6
- package/dist/MultiLinearVariantMatrixRenderer/index.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixRenderer/index.js +0 -20
- package/dist/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +0 -14
- package/dist/MultiLinearVariantMatrixRenderer/makeImageData.js +0 -154
- package/dist/MultiLinearVariantMatrixRenderer/types.d.ts +0 -14
- package/dist/MultiLinearVariantMatrixRenderer/types.js +0 -2
- package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +0 -63
- package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.js +0 -79
- package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +0 -33
- package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +0 -67
- package/dist/MultiLinearVariantRenderer/components/util.d.ts +0 -1
- package/dist/MultiLinearVariantRenderer/components/util.js +0 -15
- package/dist/MultiLinearVariantRenderer/configSchema.d.ts +0 -2
- package/dist/MultiLinearVariantRenderer/configSchema.js +0 -8
- package/dist/MultiLinearVariantRenderer/index.d.ts +0 -2
- package/dist/MultiLinearVariantRenderer/index.js +0 -19
- package/dist/MultiLinearVariantRenderer/makeImageData.d.ts +0 -14
- package/dist/MultiLinearVariantRenderer/makeImageData.js +0 -140
- package/dist/MultiLinearVariantRenderer/types.d.ts +0 -21
- package/dist/MultiLinearVariantRenderer/types.js +0 -2
- package/dist/MultiVariantBaseRenderer.d.ts +0 -46
- package/dist/MultiVariantBaseRenderer.js +0 -39
- package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.d.ts +0 -18
- package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +0 -92
- package/dist/SplitVcfTabixAdapter/configSchema.d.ts +0 -23
- package/dist/SplitVcfTabixAdapter/configSchema.js +0 -29
- package/dist/SplitVcfTabixAdapter/index.d.ts +0 -3
- package/dist/SplitVcfTabixAdapter/index.js +0 -52
- package/dist/StructuralVariantChordRenderer/Chord.d.ts +0 -13
- package/dist/StructuralVariantChordRenderer/Chord.js +0 -82
- package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +0 -16
- package/dist/StructuralVariantChordRenderer/ReactComponent.js +0 -30
- package/dist/StructuralVariantChordRenderer/configSchema.d.ts +0 -21
- package/dist/StructuralVariantChordRenderer/configSchema.js +0 -25
- package/dist/StructuralVariantChordRenderer/index.d.ts +0 -2
- package/dist/StructuralVariantChordRenderer/index.js +0 -18
- package/dist/StructuralVariantChordRenderer/types.d.ts +0 -17
- package/dist/StructuralVariantChordRenderer/types.js +0 -2
- package/dist/Tooltip.d.ts +0 -19
- package/dist/Tooltip.js +0 -32
- package/dist/VariantFeatureWidget/AltFormatter.d.ts +0 -4
- package/dist/VariantFeatureWidget/AltFormatter.js +0 -13
- package/dist/VariantFeatureWidget/Checkbox2.d.ts +0 -6
- package/dist/VariantFeatureWidget/Checkbox2.js +0 -8
- package/dist/VariantFeatureWidget/Formatter.d.ts +0 -3
- package/dist/VariantFeatureWidget/Formatter.js +0 -23
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js +0 -5
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js +0 -5
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +0 -7
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +0 -111
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js +0 -60
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/index.js +0 -8
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +0 -15
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGridWrapper.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGridWrapper.js +0 -18
- package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantFeatureWidget.js +0 -103
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +0 -4
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +0 -80
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.d.ts +0 -9
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +0 -10
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +0 -6
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +0 -54
- package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +0 -51
- package/dist/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantSampleGrid/index.js +0 -8
- package/dist/VariantFeatureWidget/VariantSampleGrid/types.d.ts +0 -21
- package/dist/VariantFeatureWidget/VariantSampleGrid/types.js +0 -2
- package/dist/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantSampleGrid/util.js +0 -14
- package/dist/VariantFeatureWidget/configSchema.d.ts +0 -1
- package/dist/VariantFeatureWidget/configSchema.js +0 -5
- package/dist/VariantFeatureWidget/index.d.ts +0 -2
- package/dist/VariantFeatureWidget/index.js +0 -52
- package/dist/VariantFeatureWidget/stateModelFactory.d.ts +0 -104
- package/dist/VariantFeatureWidget/stateModelFactory.js +0 -12
- package/dist/VariantFeatureWidget/types.d.ts +0 -16
- package/dist/VariantFeatureWidget/types.js +0 -2
- package/dist/VariantFeatureWidget/variantFieldDescriptions.d.ts +0 -9
- package/dist/VariantFeatureWidget/variantFieldDescriptions.js +0 -12
- package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +0 -14
- package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.js +0 -30
- package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +0 -6
- package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.js +0 -21
- package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +0 -19
- package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.js +0 -58
- package/dist/VariantRPC/MultiVariantGetSources.d.ts +0 -14
- package/dist/VariantRPC/MultiVariantGetSources.js +0 -22
- package/dist/VariantRPC/getGenotypeMatrix.d.ts +0 -6
- package/dist/VariantRPC/getGenotypeMatrix.js +0 -68
- package/dist/VariantRPC/types.d.ts +0 -36
- package/dist/VariantRPC/types.js +0 -2
- package/dist/VariantTrack/configSchema.d.ts +0 -79
- package/dist/VariantTrack/configSchema.js +0 -10
- package/dist/VariantTrack/index.d.ts +0 -2
- package/dist/VariantTrack/index.js +0 -20
- package/dist/VcfAdapter/VcfAdapter.d.ts +0 -35
- package/dist/VcfAdapter/VcfAdapter.js +0 -119
- package/dist/VcfAdapter/configSchema.d.ts +0 -18
- package/dist/VcfAdapter/configSchema.js +0 -35
- package/dist/VcfAdapter/index.d.ts +0 -2
- package/dist/VcfAdapter/index.js +0 -49
- package/dist/VcfAdapter/vcfParser.d.ts +0 -7
- package/dist/VcfAdapter/vcfParser.js +0 -26
- package/dist/VcfFeature/index.d.ts +0 -19
- package/dist/VcfFeature/index.js +0 -80
- package/dist/VcfFeature/util.d.ts +0 -6
- package/dist/VcfFeature/util.js +0 -227
- package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +0 -25
- package/dist/VcfTabixAdapter/VcfTabixAdapter.js +0 -117
- package/dist/VcfTabixAdapter/configSchema.d.ts +0 -32
- package/dist/VcfTabixAdapter/configSchema.js +0 -56
- package/dist/VcfTabixAdapter/index.d.ts +0 -3
- package/dist/VcfTabixAdapter/index.js +0 -52
- package/dist/extensionPoints.d.ts +0 -2
- package/dist/extensionPoints.js +0 -39
- package/dist/getMultiVariantFeaturesAutorun.js +0 -48
- package/dist/getMultiVariantSourcesAutorun.d.ts +0 -11
- package/dist/getMultiVariantSourcesAutorun.js +0 -38
- package/dist/index.d.ts +0 -7
- package/dist/index.js +0 -52
- package/dist/shared/MultiVariantBaseModel.d.ts +0 -413
- package/dist/shared/MultiVariantBaseModel.js +0 -373
- package/dist/shared/SharedVariantConfigSchema.d.ts +0 -66
- package/dist/shared/SharedVariantConfigSchema.js +0 -56
- package/dist/shared/SharedVariantMixin.d.ts +0 -325
- package/dist/shared/SharedVariantMixin.js +0 -58
- package/dist/shared/components/AddFiltersDialog.d.ts +0 -9
- package/dist/shared/components/AddFiltersDialog.js +0 -61
- package/dist/shared/components/MAFFilterDialog.d.ts +0 -8
- package/dist/shared/components/MAFFilterDialog.js +0 -28
- package/dist/shared/components/MultiVariantBaseDisplayComponent.d.ts +0 -5
- package/dist/shared/components/MultiVariantBaseDisplayComponent.js +0 -29
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +0 -6
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.js +0 -29
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +0 -7
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +0 -74
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +0 -7
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +0 -145
- package/dist/shared/components/MultiVariantClusterDialog/types.d.ts +0 -10
- package/dist/shared/components/MultiVariantClusterDialog/types.js +0 -2
- package/dist/shared/components/MultiVariantColorLegend.d.ts +0 -10
- package/dist/shared/components/MultiVariantColorLegend.js +0 -24
- package/dist/shared/components/MultiVariantCrosshairs.d.ts +0 -7
- package/dist/shared/components/MultiVariantCrosshairs.js +0 -40
- package/dist/shared/components/MultiVariantLegendBar.d.ts +0 -7
- package/dist/shared/components/MultiVariantLegendBar.js +0 -32
- package/dist/shared/components/MultiVariantTooltip.d.ts +0 -10
- package/dist/shared/components/MultiVariantTooltip.js +0 -24
- package/dist/shared/components/RectBg.d.ts +0 -8
- package/dist/shared/components/RectBg.js +0 -10
- package/dist/shared/components/SetColorDialog.d.ts +0 -11
- package/dist/shared/components/SetColorDialog.js +0 -12
- package/dist/shared/components/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/dist/shared/components/SetColorDialogBulkEditPanel.js +0 -84
- package/dist/shared/components/SetColorDialogHelpfulTips.d.ts +0 -1
- package/dist/shared/components/SetColorDialogHelpfulTips.js +0 -7
- package/dist/shared/components/SetColorDialogRowPalettizer.d.ts +0 -10
- package/dist/shared/components/SetColorDialogRowPalettizer.js +0 -41
- package/dist/shared/components/SetMinMaxDialog.d.ts +0 -10
- package/dist/shared/components/SetMinMaxDialog.js +0 -26
- package/dist/shared/components/SetRowHeightDialog.d.ts +0 -8
- package/dist/shared/components/SetRowHeightDialog.js +0 -18
- package/dist/shared/components/SourcesDataGrid.d.ts +0 -7
- package/dist/shared/components/SourcesDataGrid.js +0 -68
- package/dist/shared/components/SourcesGrid.d.ts +0 -7
- package/dist/shared/components/SourcesGrid.js +0 -14
- package/dist/shared/components/SourcesGridHeader.d.ts +0 -8
- package/dist/shared/components/SourcesGridHeader.js +0 -41
- package/dist/shared/components/ui/SetColorDialog.d.ts +0 -31
- package/dist/shared/components/ui/SetColorDialog.js +0 -51
- package/dist/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/dist/shared/components/ui/SetColorDialogBulkEditPanel.js +0 -84
- package/dist/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
- package/dist/shared/components/ui/SetColorDialogHelpfulTips.js +0 -7
- package/dist/shared/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
- package/dist/shared/components/ui/SetColorDialogRowPalettizer.js +0 -41
- package/dist/shared/constants.d.ts +0 -2
- package/dist/shared/constants.js +0 -5
- package/dist/shared/drawAlleleCount.d.ts +0 -2
- package/dist/shared/drawAlleleCount.js +0 -50
- package/dist/shared/drawPhased.d.ts +0 -1
- package/dist/shared/drawPhased.js +0 -25
- package/dist/shared/findSecondLargestNumber.d.ts +0 -0
- package/dist/shared/findSecondLargestNumber.js +0 -1
- package/dist/shared/getSources.d.ts +0 -15
- package/dist/shared/getSources.js +0 -34
- package/dist/shared/minorAlleleFrequencyUtils.d.ts +0 -14
- package/dist/shared/minorAlleleFrequencyUtils.js +0 -72
- package/dist/shared/sourcesGridUtils.d.ts +0 -11
- package/dist/shared/sourcesGridUtils.js +0 -32
- package/dist/shared/types.d.ts +0 -14
- package/dist/shared/types.js +0 -2
- package/dist/shared/util.d.ts +0 -2
- package/dist/shared/util.js +0 -21
- package/dist/util.d.ts +0 -0
- package/dist/util.js +0 -1
- package/esm/MultiVariantBaseRenderer.d.ts +0 -46
- package/esm/MultiVariantBaseRenderer.js +0 -33
- package/esm/VariantFeatureWidget/Checkbox2.d.ts +0 -6
- package/esm/VariantFeatureWidget/Checkbox2.js +0 -5
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js +0 -24
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.js +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/index.js +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/util.js +0 -11
- package/esm/extensionPoints.d.ts +0 -2
- package/esm/getMultiVariantFeaturesAutorun.d.ts +0 -18
- package/esm/shared/SharedVariantMixin.d.ts +0 -325
- package/esm/shared/SharedVariantMixin.js +0 -55
- package/esm/shared/components/ui/SetColorDialog.js +0 -45
- package/esm/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/esm/shared/components/ui/SetColorDialogBulkEditPanel.js +0 -81
- package/esm/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
- package/esm/shared/components/ui/SetColorDialogHelpfulTips.js +0 -4
- package/esm/shared/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
- package/esm/shared/components/ui/SetColorDialogRowPalettizer.js +0 -38
- package/esm/shared/findSecondLargestNumber.d.ts +0 -0
- package/esm/shared/findSecondLargestNumber.js +0 -1
- package/esm/shared/util.d.ts +0 -2
- package/esm/shared/util.js +0 -17
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|
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|
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}, {
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|
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
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}> | null;
|
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|
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|
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};
|
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readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
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260
|
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
141
261
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
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262
|
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|
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263
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regionCannotBeRendered(): null;
|
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|
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|
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|
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266
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|
|
147
267
|
setRpcDriverName(rpcDriverName: string): void;
|
|
148
268
|
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|
|
@@ -177,13 +297,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
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|
readonly regionTooLarge: boolean;
|
|
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|
readonly regionTooLargeReason: string;
|
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|
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readonly
|
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300
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+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
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301
|
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
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|
|
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} & {
|
|
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304
|
mouseoverExtraInformation: string | undefined;
|
|
185
305
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featureIdUnderMouse: undefined | string;
|
|
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|
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|
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|
|
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308
|
} & {
|
|
188
309
|
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
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310
|
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
@@ -191,88 +312,950 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
191
312
|
} & {
|
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313
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readonly renderDelay: number;
|
|
193
314
|
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
315
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
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|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
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317
|
readonly selectedFeatureId: string | undefined;
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
203
|
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|
|
318
|
+
readonly featureWidgetType: {
|
|
319
|
+
type: string;
|
|
320
|
+
id: string;
|
|
321
|
+
};
|
|
322
|
+
} & {
|
|
323
|
+
readonly showTooltipsEnabled: boolean;
|
|
324
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
325
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
326
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
327
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
|
|
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328
|
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
205
|
-
getFeatureByID(blockKey: string, id: string): (
|
|
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|
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|
|
207
|
-
|
|
208
|
-
refName: string;
|
|
209
|
-
}]) | undefined;
|
|
210
|
-
searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
|
|
211
|
-
label?: string;
|
|
212
|
-
description?: string;
|
|
213
|
-
refName: string;
|
|
214
|
-
}]) | undefined;
|
|
329
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
|
|
330
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
|
|
331
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
|
|
215
332
|
} & {
|
|
216
333
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
217
334
|
deleteBlock(key: string): void;
|
|
218
|
-
selectFeature(feature: Feature): void;
|
|
219
|
-
navToFeature(feature: Feature): void;
|
|
335
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
336
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
220
337
|
clearFeatureSelection(): void;
|
|
221
338
|
setFeatureIdUnderMouse(feature?: string): void;
|
|
222
|
-
|
|
339
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
340
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
223
341
|
setMouseoverExtraInformation(extra?: string): void;
|
|
342
|
+
setShowLegend(s: boolean): void;
|
|
343
|
+
setShowTooltips(arg: boolean): void;
|
|
224
344
|
} & {
|
|
225
345
|
reload(): Promise<void>;
|
|
346
|
+
} & {
|
|
347
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
348
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
226
349
|
} & {
|
|
227
350
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
228
351
|
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
352
|
+
renderingProps(): {
|
|
353
|
+
displayModel: {
|
|
354
|
+
id: string;
|
|
355
|
+
type: string;
|
|
356
|
+
rpcDriverName: string | undefined;
|
|
357
|
+
heightPreConfig: number | undefined;
|
|
358
|
+
userBpPerPxLimit: number | undefined;
|
|
359
|
+
userByteSizeLimit: number | undefined;
|
|
360
|
+
blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
361
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
362
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
363
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
364
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
365
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
366
|
+
}, {
|
|
367
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
368
|
+
filled: boolean;
|
|
369
|
+
reactElement: React.ReactElement | undefined;
|
|
370
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
371
|
+
layout: any;
|
|
372
|
+
blockStatusMessage: string;
|
|
373
|
+
error: unknown;
|
|
374
|
+
message: string | undefined;
|
|
375
|
+
maxHeightReached: boolean;
|
|
376
|
+
ReactComponent: ({ model, }: {
|
|
377
|
+
model: {
|
|
378
|
+
error?: unknown;
|
|
379
|
+
reload: () => void;
|
|
380
|
+
message?: React.ReactNode;
|
|
381
|
+
statusMessage?: string;
|
|
382
|
+
reactElement?: React.ReactElement;
|
|
383
|
+
isRenderingPending?: boolean;
|
|
384
|
+
};
|
|
385
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
386
|
+
renderProps: any;
|
|
387
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
388
|
+
isRenderingPending: boolean;
|
|
389
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
390
|
+
} & {
|
|
391
|
+
doReload(): void;
|
|
392
|
+
setStatusMessage(message: string): void;
|
|
393
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
394
|
+
setMessage(messageText: string): void;
|
|
395
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
|
|
396
|
+
setError(error: unknown): void;
|
|
397
|
+
reload(): void;
|
|
398
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
399
|
+
beforeDestroy(): void;
|
|
400
|
+
} & {
|
|
401
|
+
readonly statusMessage: any;
|
|
402
|
+
} & {
|
|
403
|
+
afterAttach(): void;
|
|
404
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
405
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
406
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
407
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
408
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
409
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
410
|
+
}, {
|
|
411
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
412
|
+
filled: boolean;
|
|
413
|
+
reactElement: React.ReactElement | undefined;
|
|
414
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
415
|
+
layout: any;
|
|
416
|
+
blockStatusMessage: string;
|
|
417
|
+
error: unknown;
|
|
418
|
+
message: string | undefined;
|
|
419
|
+
maxHeightReached: boolean;
|
|
420
|
+
ReactComponent: ({ model, }: {
|
|
421
|
+
model: {
|
|
422
|
+
error?: unknown;
|
|
423
|
+
reload: () => void;
|
|
424
|
+
message?: React.ReactNode;
|
|
425
|
+
statusMessage?: string;
|
|
426
|
+
reactElement?: React.ReactElement;
|
|
427
|
+
isRenderingPending?: boolean;
|
|
428
|
+
};
|
|
429
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
430
|
+
renderProps: any;
|
|
431
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
432
|
+
isRenderingPending: boolean;
|
|
433
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
434
|
+
} & {
|
|
435
|
+
doReload(): void;
|
|
436
|
+
setStatusMessage(message: string): void;
|
|
437
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
438
|
+
setMessage(messageText: string): void;
|
|
439
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
|
|
440
|
+
setError(error: unknown): void;
|
|
441
|
+
reload(): void;
|
|
442
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
443
|
+
beforeDestroy(): void;
|
|
444
|
+
} & {
|
|
445
|
+
readonly statusMessage: any;
|
|
446
|
+
} & {
|
|
447
|
+
afterAttach(): void;
|
|
448
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
449
|
+
configuration: {
|
|
450
|
+
[x: string]: any;
|
|
451
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
452
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
453
|
+
[x: string]: any;
|
|
454
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
455
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
456
|
+
[x: string]: any;
|
|
457
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
458
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
459
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
460
|
+
maxFeatureScreenDensity: {
|
|
461
|
+
type: string;
|
|
462
|
+
description: string;
|
|
463
|
+
defaultValue: number;
|
|
464
|
+
};
|
|
465
|
+
fetchSizeLimit: {
|
|
466
|
+
type: string;
|
|
467
|
+
defaultValue: number;
|
|
468
|
+
description: string;
|
|
469
|
+
};
|
|
470
|
+
height: {
|
|
471
|
+
type: string;
|
|
472
|
+
defaultValue: number;
|
|
473
|
+
description: string;
|
|
474
|
+
};
|
|
475
|
+
mouseover: {
|
|
476
|
+
type: string;
|
|
477
|
+
description: string;
|
|
478
|
+
defaultValue: string;
|
|
479
|
+
contextVariable: string[];
|
|
480
|
+
};
|
|
481
|
+
jexlFilters: {
|
|
482
|
+
type: string;
|
|
483
|
+
description: string;
|
|
484
|
+
defaultValue: never[];
|
|
485
|
+
};
|
|
486
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
|
|
487
|
+
showLegend: boolean | undefined;
|
|
488
|
+
showTooltips: boolean | undefined;
|
|
489
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
490
|
+
rendererTypeName: string;
|
|
491
|
+
error: unknown;
|
|
492
|
+
statusMessage: string | undefined;
|
|
493
|
+
} & {
|
|
494
|
+
readonly RenderingComponent: React.FC<{
|
|
495
|
+
model: {
|
|
496
|
+
id: string;
|
|
497
|
+
type: string;
|
|
498
|
+
rpcDriverName: string | undefined;
|
|
499
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
500
|
+
rendererTypeName: string;
|
|
501
|
+
error: unknown;
|
|
502
|
+
statusMessage: string | undefined;
|
|
503
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
504
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
505
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
506
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
507
|
+
}, {
|
|
508
|
+
rendererTypeName: string;
|
|
509
|
+
error: unknown;
|
|
510
|
+
statusMessage: string | undefined;
|
|
511
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
512
|
+
onHorizontalScroll?: () => void;
|
|
513
|
+
blockState?: Record<string, any>;
|
|
514
|
+
}>;
|
|
515
|
+
readonly DisplayBlurb: React.FC<{
|
|
516
|
+
model: {
|
|
517
|
+
id: string;
|
|
518
|
+
type: string;
|
|
519
|
+
rpcDriverName: string | undefined;
|
|
520
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
521
|
+
rendererTypeName: string;
|
|
522
|
+
error: unknown;
|
|
523
|
+
statusMessage: string | undefined;
|
|
524
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
525
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
526
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
527
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
528
|
+
}, {
|
|
529
|
+
rendererTypeName: string;
|
|
530
|
+
error: unknown;
|
|
531
|
+
statusMessage: string | undefined;
|
|
532
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
533
|
+
}> | null;
|
|
534
|
+
readonly adapterConfig: any;
|
|
535
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
536
|
+
readonly parentDisplay: any;
|
|
537
|
+
readonly effectiveRpcDriverName: any;
|
|
538
|
+
} & {
|
|
539
|
+
renderProps(): any;
|
|
540
|
+
renderingProps(): {
|
|
541
|
+
displayModel: {
|
|
542
|
+
id: string;
|
|
543
|
+
type: string;
|
|
544
|
+
rpcDriverName: string | undefined;
|
|
545
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
546
|
+
rendererTypeName: string;
|
|
547
|
+
error: unknown;
|
|
548
|
+
statusMessage: string | undefined;
|
|
549
|
+
} & {
|
|
550
|
+
readonly RenderingComponent: React.FC<{
|
|
551
|
+
model: {
|
|
552
|
+
id: string;
|
|
553
|
+
type: string;
|
|
554
|
+
rpcDriverName: string | undefined;
|
|
555
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
556
|
+
rendererTypeName: string;
|
|
557
|
+
error: unknown;
|
|
558
|
+
statusMessage: string | undefined;
|
|
559
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
560
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
561
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
562
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
563
|
+
}, {
|
|
564
|
+
rendererTypeName: string;
|
|
565
|
+
error: unknown;
|
|
566
|
+
statusMessage: string | undefined;
|
|
567
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
568
|
+
onHorizontalScroll?: () => void;
|
|
569
|
+
blockState?: Record<string, any>;
|
|
570
|
+
}>;
|
|
571
|
+
readonly DisplayBlurb: React.FC<{
|
|
572
|
+
model: {
|
|
573
|
+
id: string;
|
|
574
|
+
type: string;
|
|
575
|
+
rpcDriverName: string | undefined;
|
|
576
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
577
|
+
rendererTypeName: string;
|
|
578
|
+
error: unknown;
|
|
579
|
+
statusMessage: string | undefined;
|
|
580
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
581
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
582
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
583
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
584
|
+
}, {
|
|
585
|
+
rendererTypeName: string;
|
|
586
|
+
error: unknown;
|
|
587
|
+
statusMessage: string | undefined;
|
|
588
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
589
|
+
}> | null;
|
|
590
|
+
readonly adapterConfig: any;
|
|
591
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
592
|
+
readonly parentDisplay: any;
|
|
593
|
+
readonly effectiveRpcDriverName: any;
|
|
594
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
595
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
596
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
597
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
598
|
+
}, {
|
|
599
|
+
rendererTypeName: string;
|
|
600
|
+
error: unknown;
|
|
601
|
+
statusMessage: string | undefined;
|
|
602
|
+
} & {
|
|
603
|
+
readonly RenderingComponent: React.FC<{
|
|
604
|
+
model: {
|
|
605
|
+
id: string;
|
|
606
|
+
type: string;
|
|
607
|
+
rpcDriverName: string | undefined;
|
|
608
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
609
|
+
rendererTypeName: string;
|
|
610
|
+
error: unknown;
|
|
611
|
+
statusMessage: string | undefined;
|
|
612
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
613
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
614
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
615
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
616
|
+
}, {
|
|
617
|
+
rendererTypeName: string;
|
|
618
|
+
error: unknown;
|
|
619
|
+
statusMessage: string | undefined;
|
|
620
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
621
|
+
onHorizontalScroll?: () => void;
|
|
622
|
+
blockState?: Record<string, any>;
|
|
623
|
+
}>;
|
|
624
|
+
readonly DisplayBlurb: React.FC<{
|
|
625
|
+
model: {
|
|
626
|
+
id: string;
|
|
627
|
+
type: string;
|
|
628
|
+
rpcDriverName: string | undefined;
|
|
629
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
630
|
+
rendererTypeName: string;
|
|
631
|
+
error: unknown;
|
|
632
|
+
statusMessage: string | undefined;
|
|
633
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
634
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
635
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
636
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
637
|
+
}, {
|
|
638
|
+
rendererTypeName: string;
|
|
639
|
+
error: unknown;
|
|
640
|
+
statusMessage: string | undefined;
|
|
641
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
642
|
+
}> | null;
|
|
643
|
+
readonly adapterConfig: any;
|
|
644
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
645
|
+
readonly parentDisplay: any;
|
|
646
|
+
readonly effectiveRpcDriverName: any;
|
|
647
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
648
|
+
};
|
|
649
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
650
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
651
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
652
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
653
|
+
regionCannotBeRendered(): null;
|
|
654
|
+
} & {
|
|
655
|
+
setStatusMessage(arg?: string): void;
|
|
656
|
+
setError(error?: unknown): void;
|
|
657
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
658
|
+
reload(): void;
|
|
659
|
+
} & {
|
|
660
|
+
scrollTop: number;
|
|
661
|
+
} & {
|
|
662
|
+
readonly height: number;
|
|
663
|
+
} & {
|
|
664
|
+
setScrollTop(scrollTop: number): void;
|
|
665
|
+
setHeight(displayHeight: number): number;
|
|
666
|
+
resizeHeight(distance: number): number;
|
|
667
|
+
} & {
|
|
668
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
669
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
670
|
+
currStatsBpPerPx: number;
|
|
671
|
+
} & {
|
|
672
|
+
readonly currentBytesRequested: number;
|
|
673
|
+
readonly currentFeatureScreenDensity: number;
|
|
674
|
+
readonly maxFeatureScreenDensity: any;
|
|
675
|
+
readonly featureDensityStatsReady: boolean;
|
|
676
|
+
readonly maxAllowableBytes: number;
|
|
677
|
+
} & {
|
|
678
|
+
afterAttach(): void;
|
|
679
|
+
} & {
|
|
680
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
681
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
682
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
683
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
684
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
685
|
+
clearFeatureDensityStats(): void;
|
|
686
|
+
} & {
|
|
687
|
+
readonly regionTooLarge: boolean;
|
|
688
|
+
readonly regionTooLargeReason: string;
|
|
689
|
+
} & {
|
|
690
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
691
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
692
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
693
|
+
} & {
|
|
694
|
+
mouseoverExtraInformation: string | undefined;
|
|
695
|
+
featureIdUnderMouse: undefined | string;
|
|
696
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
697
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
698
|
+
} & {
|
|
699
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
700
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
701
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
702
|
+
} & {
|
|
703
|
+
readonly renderDelay: number;
|
|
704
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
705
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
706
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
707
|
+
readonly selectedFeatureId: string | undefined;
|
|
708
|
+
readonly featureWidgetType: {
|
|
709
|
+
type: string;
|
|
710
|
+
id: string;
|
|
711
|
+
};
|
|
712
|
+
} & {
|
|
713
|
+
readonly showTooltipsEnabled: boolean;
|
|
714
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
715
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
716
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
717
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
|
|
718
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
719
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
|
|
720
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
|
|
721
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
|
|
722
|
+
} & {
|
|
723
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
724
|
+
deleteBlock(key: string): void;
|
|
725
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
726
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
727
|
+
clearFeatureSelection(): void;
|
|
728
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
729
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
730
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
731
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
732
|
+
setShowLegend(s: boolean): void;
|
|
733
|
+
setShowTooltips(arg: boolean): void;
|
|
734
|
+
} & {
|
|
735
|
+
reload(): Promise<void>;
|
|
736
|
+
} & {
|
|
737
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
738
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
739
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
740
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
741
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
742
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
743
|
+
} & {
|
|
744
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
745
|
+
} & {
|
|
746
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
747
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
748
|
+
} & {
|
|
749
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
750
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
751
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
752
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
753
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
754
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
755
|
+
}, {
|
|
756
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
757
|
+
filled: boolean;
|
|
758
|
+
reactElement: React.ReactElement | undefined;
|
|
759
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
760
|
+
layout: any;
|
|
761
|
+
blockStatusMessage: string;
|
|
762
|
+
error: unknown;
|
|
763
|
+
message: string | undefined;
|
|
764
|
+
maxHeightReached: boolean;
|
|
765
|
+
ReactComponent: ({ model, }: {
|
|
766
|
+
model: {
|
|
767
|
+
error?: unknown;
|
|
768
|
+
reload: () => void;
|
|
769
|
+
message?: React.ReactNode;
|
|
770
|
+
statusMessage?: string;
|
|
771
|
+
reactElement?: React.ReactElement;
|
|
772
|
+
isRenderingPending?: boolean;
|
|
773
|
+
};
|
|
774
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
775
|
+
renderProps: any;
|
|
776
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
777
|
+
isRenderingPending: boolean;
|
|
778
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
779
|
+
} & {
|
|
780
|
+
doReload(): void;
|
|
781
|
+
setStatusMessage(message: string): void;
|
|
782
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
783
|
+
setMessage(messageText: string): void;
|
|
784
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
|
|
785
|
+
setError(error: unknown): void;
|
|
786
|
+
reload(): void;
|
|
787
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
788
|
+
beforeDestroy(): void;
|
|
789
|
+
} & {
|
|
790
|
+
readonly statusMessage: any;
|
|
791
|
+
} & {
|
|
792
|
+
afterAttach(): void;
|
|
793
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
794
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
795
|
+
maxFeatureScreenDensity: {
|
|
796
|
+
type: string;
|
|
797
|
+
description: string;
|
|
798
|
+
defaultValue: number;
|
|
799
|
+
};
|
|
800
|
+
fetchSizeLimit: {
|
|
801
|
+
type: string;
|
|
802
|
+
defaultValue: number;
|
|
803
|
+
description: string;
|
|
804
|
+
};
|
|
805
|
+
height: {
|
|
806
|
+
type: string;
|
|
807
|
+
defaultValue: number;
|
|
808
|
+
description: string;
|
|
809
|
+
};
|
|
810
|
+
mouseover: {
|
|
811
|
+
type: string;
|
|
812
|
+
description: string;
|
|
813
|
+
defaultValue: string;
|
|
814
|
+
contextVariable: string[];
|
|
815
|
+
};
|
|
816
|
+
jexlFilters: {
|
|
817
|
+
type: string;
|
|
818
|
+
description: string;
|
|
819
|
+
defaultValue: never[];
|
|
820
|
+
};
|
|
821
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
822
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
823
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
824
|
+
}, {
|
|
825
|
+
rendererTypeName: string;
|
|
826
|
+
error: unknown;
|
|
827
|
+
statusMessage: string | undefined;
|
|
828
|
+
} & {
|
|
829
|
+
readonly RenderingComponent: React.FC<{
|
|
830
|
+
model: {
|
|
831
|
+
id: string;
|
|
832
|
+
type: string;
|
|
833
|
+
rpcDriverName: string | undefined;
|
|
834
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
835
|
+
rendererTypeName: string;
|
|
836
|
+
error: unknown;
|
|
837
|
+
statusMessage: string | undefined;
|
|
838
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
839
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
840
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
841
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
842
|
+
}, {
|
|
843
|
+
rendererTypeName: string;
|
|
844
|
+
error: unknown;
|
|
845
|
+
statusMessage: string | undefined;
|
|
846
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
847
|
+
onHorizontalScroll?: () => void;
|
|
848
|
+
blockState?: Record<string, any>;
|
|
849
|
+
}>;
|
|
850
|
+
readonly DisplayBlurb: React.FC<{
|
|
851
|
+
model: {
|
|
852
|
+
id: string;
|
|
853
|
+
type: string;
|
|
854
|
+
rpcDriverName: string | undefined;
|
|
855
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
856
|
+
rendererTypeName: string;
|
|
857
|
+
error: unknown;
|
|
858
|
+
statusMessage: string | undefined;
|
|
859
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
860
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
861
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
862
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
863
|
+
}, {
|
|
864
|
+
rendererTypeName: string;
|
|
865
|
+
error: unknown;
|
|
866
|
+
statusMessage: string | undefined;
|
|
867
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
868
|
+
}> | null;
|
|
869
|
+
readonly adapterConfig: any;
|
|
870
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
871
|
+
readonly parentDisplay: any;
|
|
872
|
+
readonly effectiveRpcDriverName: any;
|
|
873
|
+
} & {
|
|
874
|
+
renderProps(): any;
|
|
875
|
+
renderingProps(): {
|
|
876
|
+
displayModel: {
|
|
877
|
+
id: string;
|
|
878
|
+
type: string;
|
|
879
|
+
rpcDriverName: string | undefined;
|
|
880
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
881
|
+
rendererTypeName: string;
|
|
882
|
+
error: unknown;
|
|
883
|
+
statusMessage: string | undefined;
|
|
884
|
+
} & {
|
|
885
|
+
readonly RenderingComponent: React.FC<{
|
|
886
|
+
model: {
|
|
887
|
+
id: string;
|
|
888
|
+
type: string;
|
|
889
|
+
rpcDriverName: string | undefined;
|
|
890
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
891
|
+
rendererTypeName: string;
|
|
892
|
+
error: unknown;
|
|
893
|
+
statusMessage: string | undefined;
|
|
894
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
895
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
896
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
897
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
898
|
+
}, {
|
|
899
|
+
rendererTypeName: string;
|
|
900
|
+
error: unknown;
|
|
901
|
+
statusMessage: string | undefined;
|
|
902
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
903
|
+
onHorizontalScroll?: () => void;
|
|
904
|
+
blockState?: Record<string, any>;
|
|
905
|
+
}>;
|
|
906
|
+
readonly DisplayBlurb: React.FC<{
|
|
907
|
+
model: {
|
|
908
|
+
id: string;
|
|
909
|
+
type: string;
|
|
910
|
+
rpcDriverName: string | undefined;
|
|
911
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
912
|
+
rendererTypeName: string;
|
|
913
|
+
error: unknown;
|
|
914
|
+
statusMessage: string | undefined;
|
|
915
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
916
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
917
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
918
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
919
|
+
}, {
|
|
920
|
+
rendererTypeName: string;
|
|
921
|
+
error: unknown;
|
|
922
|
+
statusMessage: string | undefined;
|
|
923
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
924
|
+
}> | null;
|
|
925
|
+
readonly adapterConfig: any;
|
|
926
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
927
|
+
readonly parentDisplay: any;
|
|
928
|
+
readonly effectiveRpcDriverName: any;
|
|
929
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
930
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
931
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
932
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
933
|
+
}, {
|
|
934
|
+
rendererTypeName: string;
|
|
935
|
+
error: unknown;
|
|
936
|
+
statusMessage: string | undefined;
|
|
937
|
+
} & {
|
|
938
|
+
readonly RenderingComponent: React.FC<{
|
|
939
|
+
model: {
|
|
940
|
+
id: string;
|
|
941
|
+
type: string;
|
|
942
|
+
rpcDriverName: string | undefined;
|
|
943
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
944
|
+
rendererTypeName: string;
|
|
945
|
+
error: unknown;
|
|
946
|
+
statusMessage: string | undefined;
|
|
947
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
948
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
949
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
950
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
951
|
+
}, {
|
|
952
|
+
rendererTypeName: string;
|
|
953
|
+
error: unknown;
|
|
954
|
+
statusMessage: string | undefined;
|
|
955
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
956
|
+
onHorizontalScroll?: () => void;
|
|
957
|
+
blockState?: Record<string, any>;
|
|
958
|
+
}>;
|
|
959
|
+
readonly DisplayBlurb: React.FC<{
|
|
960
|
+
model: {
|
|
961
|
+
id: string;
|
|
962
|
+
type: string;
|
|
963
|
+
rpcDriverName: string | undefined;
|
|
964
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
965
|
+
rendererTypeName: string;
|
|
966
|
+
error: unknown;
|
|
967
|
+
statusMessage: string | undefined;
|
|
968
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
969
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
970
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
971
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
972
|
+
}, {
|
|
973
|
+
rendererTypeName: string;
|
|
974
|
+
error: unknown;
|
|
975
|
+
statusMessage: string | undefined;
|
|
976
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
977
|
+
}> | null;
|
|
978
|
+
readonly adapterConfig: any;
|
|
979
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
980
|
+
readonly parentDisplay: any;
|
|
981
|
+
readonly effectiveRpcDriverName: any;
|
|
982
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
983
|
+
};
|
|
984
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
985
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
986
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
987
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
988
|
+
regionCannotBeRendered(): null;
|
|
989
|
+
} & {
|
|
990
|
+
setStatusMessage(arg?: string): void;
|
|
991
|
+
setError(error?: unknown): void;
|
|
992
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
993
|
+
reload(): void;
|
|
994
|
+
} & {
|
|
995
|
+
scrollTop: number;
|
|
996
|
+
} & {
|
|
997
|
+
readonly height: number;
|
|
998
|
+
} & {
|
|
999
|
+
setScrollTop(scrollTop: number): void;
|
|
1000
|
+
setHeight(displayHeight: number): number;
|
|
1001
|
+
resizeHeight(distance: number): number;
|
|
1002
|
+
} & {
|
|
1003
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
1004
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
1005
|
+
currStatsBpPerPx: number;
|
|
1006
|
+
} & {
|
|
1007
|
+
readonly currentBytesRequested: number;
|
|
1008
|
+
readonly currentFeatureScreenDensity: number;
|
|
1009
|
+
readonly maxFeatureScreenDensity: any;
|
|
1010
|
+
readonly featureDensityStatsReady: boolean;
|
|
1011
|
+
readonly maxAllowableBytes: number;
|
|
1012
|
+
} & {
|
|
1013
|
+
afterAttach(): void;
|
|
1014
|
+
} & {
|
|
1015
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
1016
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
1017
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
1018
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
1019
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
1020
|
+
clearFeatureDensityStats(): void;
|
|
1021
|
+
} & {
|
|
1022
|
+
readonly regionTooLarge: boolean;
|
|
1023
|
+
readonly regionTooLargeReason: string;
|
|
1024
|
+
} & {
|
|
1025
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
1026
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
1027
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
1028
|
+
} & {
|
|
1029
|
+
mouseoverExtraInformation: string | undefined;
|
|
1030
|
+
featureIdUnderMouse: undefined | string;
|
|
1031
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
1032
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
1033
|
+
} & {
|
|
1034
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
1035
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
1036
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
1037
|
+
} & {
|
|
1038
|
+
readonly renderDelay: number;
|
|
1039
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
1040
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
1041
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
1042
|
+
readonly selectedFeatureId: string | undefined;
|
|
1043
|
+
readonly featureWidgetType: {
|
|
1044
|
+
type: string;
|
|
1045
|
+
id: string;
|
|
1046
|
+
};
|
|
1047
|
+
} & {
|
|
1048
|
+
readonly showTooltipsEnabled: boolean;
|
|
1049
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
1050
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
1051
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
1052
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
|
|
1053
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
1054
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
|
|
1055
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
|
|
1056
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
|
|
1057
|
+
} & {
|
|
1058
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
1059
|
+
deleteBlock(key: string): void;
|
|
1060
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
1061
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
1062
|
+
clearFeatureSelection(): void;
|
|
1063
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
1064
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
1065
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
1066
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
1067
|
+
setShowLegend(s: boolean): void;
|
|
1068
|
+
setShowTooltips(arg: boolean): void;
|
|
1069
|
+
} & {
|
|
1070
|
+
reload(): Promise<void>;
|
|
1071
|
+
} & {
|
|
1072
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
1073
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
1074
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1075
|
+
onMouseMove(_: unknown, featureId?: string): void;
|
|
1076
|
+
onMouseLeave(_: unknown): void;
|
|
1077
|
+
onContextMenu(_: unknown): void;
|
|
1078
|
+
};
|
|
229
1079
|
renderProps(): any;
|
|
230
1080
|
} & {
|
|
231
1081
|
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
232
1082
|
afterAttach(): void;
|
|
1083
|
+
} & {
|
|
1084
|
+
featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
|
|
233
1085
|
} & {
|
|
234
1086
|
readonly activeFilters: any;
|
|
235
1087
|
readonly rendererTypeName: any;
|
|
1088
|
+
readonly sequenceAdapter: any;
|
|
236
1089
|
readonly showLabels: any;
|
|
237
1090
|
readonly showDescriptions: any;
|
|
238
1091
|
readonly maxHeight: any;
|
|
239
1092
|
readonly displayMode: any;
|
|
240
1093
|
} & {
|
|
241
1094
|
readonly rendererConfig: {
|
|
242
|
-
|
|
243
|
-
|
|
244
|
-
|
|
245
|
-
|
|
246
|
-
|
|
247
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
248
|
-
[x: string]: any;
|
|
249
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
250
|
-
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
251
|
-
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
|
|
1095
|
+
showLabels: any;
|
|
1096
|
+
showDescriptions: any;
|
|
1097
|
+
displayMode: any;
|
|
1098
|
+
maxHeight: any;
|
|
1099
|
+
};
|
|
252
1100
|
} & {
|
|
253
1101
|
setJexlFilters(f?: string[]): void;
|
|
1102
|
+
setFeatureUnderMouse(feat?: import("@jbrowse/core/util").Feature): void;
|
|
254
1103
|
toggleShowLabels(): void;
|
|
255
1104
|
toggleShowDescriptions(): void;
|
|
256
1105
|
setDisplayMode(val: string): void;
|
|
257
1106
|
setMaxHeight(val?: number): void;
|
|
1107
|
+
} & {
|
|
1108
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
258
1109
|
} & {
|
|
259
1110
|
renderProps(): {
|
|
260
1111
|
config: {
|
|
261
|
-
|
|
262
|
-
|
|
263
|
-
|
|
264
|
-
|
|
265
|
-
|
|
266
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
267
|
-
[x: string]: any;
|
|
268
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
269
|
-
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
270
|
-
} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
|
|
1112
|
+
showLabels: any;
|
|
1113
|
+
showDescriptions: any;
|
|
1114
|
+
displayMode: any;
|
|
1115
|
+
maxHeight: any;
|
|
1116
|
+
};
|
|
271
1117
|
filters: import("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain").default;
|
|
1118
|
+
sequenceAdapter: any;
|
|
1119
|
+
};
|
|
1120
|
+
renderingProps(): {
|
|
1121
|
+
onFeatureClick(_: unknown, featureId?: string): Promise<void>;
|
|
1122
|
+
onFeatureContextMenu(_: unknown, featureId?: string): Promise<void>;
|
|
1123
|
+
displayModel: {
|
|
1124
|
+
id: string;
|
|
1125
|
+
type: string;
|
|
1126
|
+
rpcDriverName: string | undefined;
|
|
1127
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1128
|
+
rendererTypeName: string;
|
|
1129
|
+
error: unknown;
|
|
1130
|
+
statusMessage: string | undefined;
|
|
1131
|
+
} & {
|
|
1132
|
+
readonly RenderingComponent: React.FC<{
|
|
1133
|
+
model: {
|
|
1134
|
+
id: string;
|
|
1135
|
+
type: string;
|
|
1136
|
+
rpcDriverName: string | undefined;
|
|
1137
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1138
|
+
rendererTypeName: string;
|
|
1139
|
+
error: unknown;
|
|
1140
|
+
statusMessage: string | undefined;
|
|
1141
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1142
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1143
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1144
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1145
|
+
}, {
|
|
1146
|
+
rendererTypeName: string;
|
|
1147
|
+
error: unknown;
|
|
1148
|
+
statusMessage: string | undefined;
|
|
1149
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1150
|
+
onHorizontalScroll?: () => void;
|
|
1151
|
+
blockState?: Record<string, any>;
|
|
1152
|
+
}>;
|
|
1153
|
+
readonly DisplayBlurb: React.FC<{
|
|
1154
|
+
model: {
|
|
1155
|
+
id: string;
|
|
1156
|
+
type: string;
|
|
1157
|
+
rpcDriverName: string | undefined;
|
|
1158
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1159
|
+
rendererTypeName: string;
|
|
1160
|
+
error: unknown;
|
|
1161
|
+
statusMessage: string | undefined;
|
|
1162
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1163
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1164
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1165
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1166
|
+
}, {
|
|
1167
|
+
rendererTypeName: string;
|
|
1168
|
+
error: unknown;
|
|
1169
|
+
statusMessage: string | undefined;
|
|
1170
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1171
|
+
}> | null;
|
|
1172
|
+
readonly adapterConfig: any;
|
|
1173
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1174
|
+
readonly parentDisplay: any;
|
|
1175
|
+
readonly effectiveRpcDriverName: any;
|
|
1176
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1177
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1178
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1179
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1180
|
+
}, {
|
|
1181
|
+
rendererTypeName: string;
|
|
1182
|
+
error: unknown;
|
|
1183
|
+
statusMessage: string | undefined;
|
|
1184
|
+
} & {
|
|
1185
|
+
readonly RenderingComponent: React.FC<{
|
|
1186
|
+
model: {
|
|
1187
|
+
id: string;
|
|
1188
|
+
type: string;
|
|
1189
|
+
rpcDriverName: string | undefined;
|
|
1190
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1191
|
+
rendererTypeName: string;
|
|
1192
|
+
error: unknown;
|
|
1193
|
+
statusMessage: string | undefined;
|
|
1194
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1195
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1196
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1197
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1198
|
+
}, {
|
|
1199
|
+
rendererTypeName: string;
|
|
1200
|
+
error: unknown;
|
|
1201
|
+
statusMessage: string | undefined;
|
|
1202
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1203
|
+
onHorizontalScroll?: () => void;
|
|
1204
|
+
blockState?: Record<string, any>;
|
|
1205
|
+
}>;
|
|
1206
|
+
readonly DisplayBlurb: React.FC<{
|
|
1207
|
+
model: {
|
|
1208
|
+
id: string;
|
|
1209
|
+
type: string;
|
|
1210
|
+
rpcDriverName: string | undefined;
|
|
1211
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1212
|
+
rendererTypeName: string;
|
|
1213
|
+
error: unknown;
|
|
1214
|
+
statusMessage: string | undefined;
|
|
1215
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1216
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1217
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1218
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1219
|
+
}, {
|
|
1220
|
+
rendererTypeName: string;
|
|
1221
|
+
error: unknown;
|
|
1222
|
+
statusMessage: string | undefined;
|
|
1223
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1224
|
+
}> | null;
|
|
1225
|
+
readonly adapterConfig: any;
|
|
1226
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1227
|
+
readonly parentDisplay: any;
|
|
1228
|
+
readonly effectiveRpcDriverName: any;
|
|
1229
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
272
1230
|
};
|
|
273
1231
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
274
1232
|
} & {
|
|
275
|
-
|
|
276
|
-
|
|
1233
|
+
readonly featureWidgetType: {
|
|
1234
|
+
type: string;
|
|
1235
|
+
id: string;
|
|
1236
|
+
};
|
|
1237
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, {
|
|
1238
|
+
id: string;
|
|
1239
|
+
type: "LinearFeatureDisplay";
|
|
1240
|
+
rpcDriverName: string | undefined;
|
|
1241
|
+
heightPreConfig: number | undefined;
|
|
1242
|
+
userBpPerPxLimit: number | undefined;
|
|
1243
|
+
userByteSizeLimit: number | undefined;
|
|
1244
|
+
blockState: import("mobx").IKeyValueMap<import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
|
|
1245
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1246
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
1247
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
1248
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1249
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1250
|
+
}>>;
|
|
1251
|
+
configuration: import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>;
|
|
1252
|
+
showLegend: boolean | undefined;
|
|
1253
|
+
showTooltips: boolean | undefined;
|
|
1254
|
+
trackShowLabels: boolean | undefined;
|
|
1255
|
+
trackShowDescriptions: boolean | undefined;
|
|
1256
|
+
trackDisplayMode: string | undefined;
|
|
1257
|
+
trackMaxHeight: number | undefined;
|
|
1258
|
+
jexlFilters: string[] | undefined;
|
|
1259
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
277
1260
|
export type LinearVariantDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
278
1261
|
export type LinearVariantDisplayModel = Instance<LinearVariantDisplayStateModel>;
|