@jbrowse/plugin-variants 3.7.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (539) hide show
  1. package/esm/ChordVariantDisplay/components/ChordVariantDisplay.d.ts +11 -0
  2. package/esm/ChordVariantDisplay/components/ChordVariantDisplay.js +16 -0
  3. package/esm/ChordVariantDisplay/components/DisplayError.d.ts +9 -0
  4. package/esm/ChordVariantDisplay/components/DisplayError.js +7 -0
  5. package/esm/ChordVariantDisplay/components/Loading.d.ts +8 -0
  6. package/esm/ChordVariantDisplay/components/Loading.js +28 -0
  7. package/esm/ChordVariantDisplay/index.js +4 -4
  8. package/esm/ChordVariantDisplay/models/configSchema.d.ts +4 -5
  9. package/esm/ChordVariantDisplay/models/configSchema.js +10 -5
  10. package/esm/ChordVariantDisplay/models/renderReaction.d.ts +30 -0
  11. package/esm/ChordVariantDisplay/models/renderReaction.js +48 -0
  12. package/esm/ChordVariantDisplay/models/renderSvg.d.ts +6 -0
  13. package/esm/ChordVariantDisplay/models/renderSvg.js +12 -0
  14. package/esm/ChordVariantDisplay/models/stateModelFactory.d.ts +535 -46
  15. package/esm/ChordVariantDisplay/models/stateModelFactory.js +146 -8
  16. package/esm/LinearVariantDisplay/configSchema.d.ts +5 -5
  17. package/esm/LinearVariantDisplay/configSchema.js +2 -2
  18. package/esm/LinearVariantDisplay/index.js +6 -4
  19. package/esm/LinearVariantDisplay/model.d.ts +1086 -103
  20. package/esm/LinearVariantDisplay/model.js +10 -26
  21. package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +1 -1
  22. package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +8 -18
  23. package/esm/MultiLinearVariantDisplay/configSchema.d.ts +6 -44
  24. package/esm/MultiLinearVariantDisplay/configSchema.js +2 -2
  25. package/esm/MultiLinearVariantDisplay/index.js +4 -3
  26. package/esm/MultiLinearVariantDisplay/model.d.ts +1031 -125
  27. package/esm/MultiLinearVariantDisplay/model.js +3 -23
  28. package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +1 -1
  29. package/esm/MultiLinearVariantDisplay/renderSvg.js +4 -4
  30. package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +8 -2
  31. package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +26 -23
  32. package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +1 -1
  33. package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +9 -20
  34. package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +6 -6
  35. package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +1 -1
  36. package/esm/MultiLinearVariantMatrixDisplay/index.js +5 -4
  37. package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +1110 -131
  38. package/esm/MultiLinearVariantMatrixDisplay/model.js +22 -48
  39. package/esm/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +1 -1
  40. package/esm/MultiLinearVariantMatrixDisplay/renderSvg.js +3 -3
  41. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +4 -35
  42. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +19 -33
  43. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +12 -1
  44. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +48 -22
  45. package/esm/MultiLinearVariantMatrixRenderer/configSchema.d.ts +1 -1
  46. package/esm/MultiLinearVariantMatrixRenderer/index.js +4 -4
  47. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +10 -2
  48. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +155 -135
  49. package/esm/MultiLinearVariantMatrixRenderer/types.d.ts +2 -14
  50. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +3 -60
  51. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +9 -18
  52. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +7 -6
  53. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +30 -26
  54. package/esm/MultiLinearVariantRenderer/configSchema.d.ts +1 -1
  55. package/esm/MultiLinearVariantRenderer/index.js +4 -4
  56. package/esm/MultiLinearVariantRenderer/makeImageData.d.ts +14 -11
  57. package/esm/MultiLinearVariantRenderer/makeImageData.js +127 -110
  58. package/esm/MultiLinearVariantRenderer/types.d.ts +3 -20
  59. package/esm/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +1 -1
  60. package/esm/SplitVcfTabixAdapter/configSchema.d.ts +2 -2
  61. package/esm/SplitVcfTabixAdapter/index.d.ts +1 -1
  62. package/esm/SplitVcfTabixAdapter/index.js +3 -3
  63. package/esm/StructuralVariantChordRenderer/Chord.d.ts +1 -1
  64. package/esm/StructuralVariantChordRenderer/Chord.js +41 -58
  65. package/esm/StructuralVariantChordRenderer/ReactComponent.d.ts +3 -3
  66. package/esm/StructuralVariantChordRenderer/ReactComponent.js +3 -3
  67. package/esm/StructuralVariantChordRenderer/configSchema.d.ts +2 -2
  68. package/esm/StructuralVariantChordRenderer/index.js +3 -3
  69. package/esm/Tooltip.js +2 -2
  70. package/esm/VariantFeatureWidget/AltFormatter.js +1 -1
  71. package/esm/VariantFeatureWidget/Formatter.js +2 -2
  72. package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.d.ts +1 -0
  73. package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.js +1 -0
  74. package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +1 -1
  75. package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +8 -23
  76. package/esm/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +1 -1
  77. package/esm/VariantFeatureWidget/VariantFeatureWidget.d.ts +1 -1
  78. package/esm/VariantFeatureWidget/VariantFeatureWidget.js +16 -29
  79. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +5 -2
  80. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +68 -59
  81. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +13 -2
  82. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +1 -1
  83. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +72 -30
  84. package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +2 -2
  85. package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +49 -26
  86. package/esm/VariantFeatureWidget/VariantSampleGrid/types.d.ts +3 -5
  87. package/esm/VariantFeatureWidget/configSchema.d.ts +1 -1
  88. package/esm/VariantFeatureWidget/index.js +3 -3
  89. package/esm/VariantFeatureWidget/stateModelFactory.d.ts +39 -39
  90. package/esm/VariantFeatureWidget/stateModelFactory.js +1 -1
  91. package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +2 -7
  92. package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.js +3 -14
  93. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +4 -2
  94. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +2 -5
  95. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +2 -2
  96. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +34 -19
  97. package/esm/VariantRPC/MultiVariantGetSources.js +2 -6
  98. package/esm/VariantRPC/executeClusterGenotypeMatrix.d.ts +22 -0
  99. package/esm/VariantRPC/executeClusterGenotypeMatrix.js +19 -0
  100. package/esm/VariantRPC/getGenotypeMatrix.d.ts +18 -3
  101. package/esm/VariantRPC/getGenotypeMatrix.js +23 -40
  102. package/esm/VariantRPC/types.d.ts +10 -24
  103. package/esm/VariantTrack/configSchema.d.ts +16 -11
  104. package/esm/VariantTrack/index.js +13 -2
  105. package/esm/VariantTrack/saveTrackFormats/vcf.d.ts +4 -0
  106. package/esm/VariantTrack/saveTrackFormats/vcf.js +15 -0
  107. package/esm/VcfAdapter/VcfAdapter.d.ts +6 -3
  108. package/esm/VcfAdapter/VcfAdapter.js +36 -24
  109. package/esm/VcfAdapter/configSchema.d.ts +2 -2
  110. package/esm/VcfAdapter/index.js +3 -2
  111. package/esm/VcfExtensionPoints/index.d.ts +2 -0
  112. package/esm/{extensionPoints.js → VcfExtensionPoints/index.js} +1 -1
  113. package/esm/VcfFeature/index.js +20 -8
  114. package/esm/VcfFeature/util.d.ts +0 -1
  115. package/esm/VcfFeature/util.js +70 -188
  116. package/esm/VcfTabixAdapter/VcfTabixAdapter.d.ts +2 -0
  117. package/esm/VcfTabixAdapter/VcfTabixAdapter.js +28 -3
  118. package/esm/VcfTabixAdapter/configSchema.d.ts +5 -5
  119. package/esm/VcfTabixAdapter/configSchema.js +1 -1
  120. package/esm/VcfTabixAdapter/index.d.ts +1 -1
  121. package/esm/VcfTabixAdapter/index.js +4 -3
  122. package/esm/d3-hierarchy2/accessors.d.ts +2 -0
  123. package/esm/d3-hierarchy2/accessors.js +8 -0
  124. package/esm/d3-hierarchy2/array.d.ts +2 -0
  125. package/esm/d3-hierarchy2/array.js +15 -0
  126. package/esm/d3-hierarchy2/cluster.d.ts +8 -0
  127. package/esm/d3-hierarchy2/cluster.js +63 -0
  128. package/esm/d3-hierarchy2/constant.d.ts +2 -0
  129. package/esm/d3-hierarchy2/constant.js +8 -0
  130. package/esm/d3-hierarchy2/hierarchy/ancestors.d.ts +1 -0
  131. package/esm/d3-hierarchy2/hierarchy/ancestors.js +7 -0
  132. package/esm/d3-hierarchy2/hierarchy/count.d.ts +1 -0
  133. package/esm/d3-hierarchy2/hierarchy/count.js +12 -0
  134. package/esm/d3-hierarchy2/hierarchy/descendants.d.ts +1 -0
  135. package/esm/d3-hierarchy2/hierarchy/descendants.js +3 -0
  136. package/esm/d3-hierarchy2/hierarchy/each.d.ts +1 -0
  137. package/esm/d3-hierarchy2/hierarchy/each.js +7 -0
  138. package/esm/d3-hierarchy2/hierarchy/eachAfter.d.ts +1 -0
  139. package/esm/d3-hierarchy2/hierarchy/eachAfter.js +15 -0
  140. package/esm/d3-hierarchy2/hierarchy/eachBefore.d.ts +1 -0
  141. package/esm/d3-hierarchy2/hierarchy/eachBefore.js +12 -0
  142. package/esm/d3-hierarchy2/hierarchy/find.d.ts +1 -0
  143. package/esm/d3-hierarchy2/hierarchy/find.js +8 -0
  144. package/esm/d3-hierarchy2/hierarchy/index.d.ts +3 -0
  145. package/esm/d3-hierarchy2/hierarchy/index.js +78 -0
  146. package/esm/d3-hierarchy2/hierarchy/iterator.d.ts +1 -0
  147. package/esm/d3-hierarchy2/hierarchy/iterator.js +14 -0
  148. package/esm/d3-hierarchy2/hierarchy/leaves.d.ts +1 -0
  149. package/esm/d3-hierarchy2/hierarchy/leaves.js +9 -0
  150. package/esm/d3-hierarchy2/hierarchy/links.d.ts +1 -0
  151. package/esm/d3-hierarchy2/hierarchy/links.js +9 -0
  152. package/esm/d3-hierarchy2/hierarchy/path.d.ts +1 -0
  153. package/esm/d3-hierarchy2/hierarchy/path.js +26 -0
  154. package/esm/d3-hierarchy2/hierarchy/sort.d.ts +1 -0
  155. package/esm/d3-hierarchy2/hierarchy/sort.js +7 -0
  156. package/esm/d3-hierarchy2/hierarchy/sum.d.ts +1 -0
  157. package/esm/d3-hierarchy2/hierarchy/sum.js +8 -0
  158. package/esm/d3-hierarchy2/index.d.ts +15 -0
  159. package/esm/d3-hierarchy2/index.js +15 -0
  160. package/esm/d3-hierarchy2/lcg.d.ts +1 -0
  161. package/esm/d3-hierarchy2/lcg.js +7 -0
  162. package/esm/d3-hierarchy2/pack/enclose.d.ts +10 -0
  163. package/esm/d3-hierarchy2/pack/enclose.js +84 -0
  164. package/esm/d3-hierarchy2/pack/index.d.ts +7 -0
  165. package/esm/d3-hierarchy2/pack/index.js +68 -0
  166. package/esm/d3-hierarchy2/pack/siblings.d.ts +2 -0
  167. package/esm/d3-hierarchy2/pack/siblings.js +94 -0
  168. package/esm/d3-hierarchy2/partition.d.ts +6 -0
  169. package/esm/d3-hierarchy2/partition.js +42 -0
  170. package/esm/d3-hierarchy2/stratify.d.ts +9 -0
  171. package/esm/d3-hierarchy2/stratify.js +115 -0
  172. package/esm/d3-hierarchy2/tree.d.ts +8 -0
  173. package/esm/d3-hierarchy2/tree.js +153 -0
  174. package/esm/d3-hierarchy2/treemap/binary.d.ts +1 -0
  175. package/esm/d3-hierarchy2/treemap/binary.js +36 -0
  176. package/esm/d3-hierarchy2/treemap/dice.d.ts +1 -0
  177. package/esm/d3-hierarchy2/treemap/dice.js +7 -0
  178. package/esm/d3-hierarchy2/treemap/index.d.ts +17 -0
  179. package/esm/d3-hierarchy2/treemap/index.js +72 -0
  180. package/esm/d3-hierarchy2/treemap/resquarify.d.ts +5 -0
  181. package/esm/d3-hierarchy2/treemap/resquarify.js +28 -0
  182. package/esm/d3-hierarchy2/treemap/round.d.ts +1 -0
  183. package/esm/d3-hierarchy2/treemap/round.js +6 -0
  184. package/esm/d3-hierarchy2/treemap/slice.d.ts +1 -0
  185. package/esm/d3-hierarchy2/treemap/slice.js +7 -0
  186. package/esm/d3-hierarchy2/treemap/sliceDice.d.ts +1 -0
  187. package/esm/d3-hierarchy2/treemap/sliceDice.js +5 -0
  188. package/esm/d3-hierarchy2/treemap/squarify.d.ts +11 -0
  189. package/esm/d3-hierarchy2/treemap/squarify.js +46 -0
  190. package/esm/index.d.ts +1 -1
  191. package/esm/index.js +19 -22
  192. package/esm/shared/MultiVariantBaseModel.d.ts +1103 -117
  193. package/esm/shared/MultiVariantBaseModel.js +231 -65
  194. package/esm/shared/SharedVariantConfigSchema.d.ts +2 -40
  195. package/esm/shared/SharedVariantConfigSchema.js +1 -46
  196. package/esm/shared/components/AddFiltersDialog.d.ts +2 -3
  197. package/esm/shared/components/AddFiltersDialog.js +20 -28
  198. package/esm/shared/components/{ui/SetColorDialog.d.ts → BaseSetColorDialog.d.ts} +2 -1
  199. package/esm/shared/components/BaseSetColorDialog.js +61 -0
  200. package/esm/shared/components/ClearTreeWarningDialog.d.ts +4 -0
  201. package/esm/shared/components/ClearTreeWarningDialog.js +9 -0
  202. package/esm/shared/components/MAFFilterDialog.d.ts +2 -3
  203. package/esm/shared/components/MAFFilterDialog.js +4 -8
  204. package/esm/shared/components/MultiVariantBaseDisplayComponent.d.ts +1 -1
  205. package/esm/shared/components/MultiVariantBaseDisplayComponent.js +8 -17
  206. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +1 -1
  207. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.js +3 -3
  208. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +1 -1
  209. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +9 -14
  210. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +1 -1
  211. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +11 -15
  212. package/esm/shared/components/MultiVariantClusterDialog/types.d.ts +3 -2
  213. package/esm/shared/components/MultiVariantColorLegend.d.ts +1 -1
  214. package/esm/shared/components/MultiVariantColorLegend.js +22 -12
  215. package/esm/shared/components/MultiVariantCrosshairs.d.ts +4 -2
  216. package/esm/shared/components/MultiVariantCrosshairs.js +31 -23
  217. package/esm/shared/components/MultiVariantLegendBar.d.ts +4 -4
  218. package/esm/shared/components/MultiVariantLegendBar.js +24 -22
  219. package/esm/shared/components/MultiVariantLegendBarWrapper.d.ts +7 -0
  220. package/esm/shared/components/MultiVariantLegendBarWrapper.js +18 -0
  221. package/esm/shared/components/MultiVariantTooltip.d.ts +5 -6
  222. package/esm/shared/components/MultiVariantTooltip.js +35 -17
  223. package/esm/shared/components/ScrollableVariantContainer.d.ts +8 -0
  224. package/esm/shared/components/ScrollableVariantContainer.js +23 -0
  225. package/esm/shared/components/SetColorDialog.d.ts +3 -2
  226. package/esm/shared/components/SetColorDialog.js +2 -2
  227. package/esm/shared/components/SetColorDialogBulkEditPanel.d.ts +7 -8
  228. package/esm/shared/components/SetColorDialogBulkEditPanel.js +24 -54
  229. package/esm/shared/components/SetColorDialogRowPalettizer.js +13 -23
  230. package/esm/shared/components/SetRowHeightDialog.d.ts +2 -3
  231. package/esm/shared/components/SourcesDataGrid.d.ts +1 -1
  232. package/esm/shared/components/SourcesDataGrid.js +1 -1
  233. package/esm/shared/components/SourcesGrid.d.ts +1 -1
  234. package/esm/shared/components/SourcesGrid.js +2 -2
  235. package/esm/shared/components/SourcesGridHeader.d.ts +1 -1
  236. package/esm/shared/components/SourcesGridHeader.js +1 -1
  237. package/esm/shared/components/SvgTree.d.ts +5 -0
  238. package/esm/shared/components/SvgTree.js +19 -0
  239. package/esm/shared/components/TreeSidebar.d.ts +5 -0
  240. package/esm/shared/components/TreeSidebar.js +121 -0
  241. package/esm/shared/components/types.d.ts +43 -0
  242. package/esm/shared/components/types.js +1 -0
  243. package/esm/shared/constants.d.ts +8 -2
  244. package/esm/shared/constants.js +11 -2
  245. package/esm/shared/drawAlleleCount.d.ts +2 -1
  246. package/esm/shared/drawAlleleCount.js +50 -16
  247. package/esm/shared/drawPhased.js +11 -12
  248. package/{dist → esm/shared}/getMultiVariantFeaturesAutorun.d.ts +5 -4
  249. package/esm/{getMultiVariantFeaturesAutorun.js → shared/getMultiVariantFeaturesAutorun.js} +9 -2
  250. package/esm/{getMultiVariantSourcesAutorun.d.ts → shared/getMultiVariantSourcesAutorun.d.ts} +4 -3
  251. package/esm/{getMultiVariantSourcesAutorun.js → shared/getMultiVariantSourcesAutorun.js} +10 -2
  252. package/esm/shared/getSources.d.ts +1 -1
  253. package/esm/shared/getSources.js +2 -2
  254. package/esm/shared/hooks/useMouseTracking.d.ts +6 -0
  255. package/esm/shared/hooks/useMouseTracking.js +34 -0
  256. package/esm/shared/makeSidebarSvg.d.ts +9 -0
  257. package/esm/shared/makeSidebarSvg.js +9 -0
  258. package/esm/shared/minorAlleleFrequencyUtils.d.ts +6 -5
  259. package/esm/shared/minorAlleleFrequencyUtils.js +37 -38
  260. package/esm/shared/setupMultiVariantAutoruns.d.ts +2 -0
  261. package/esm/shared/setupMultiVariantAutoruns.js +8 -0
  262. package/esm/shared/treeDrawingAutorun.d.ts +16 -0
  263. package/esm/shared/treeDrawingAutorun.js +71 -0
  264. package/esm/shared/types.d.ts +15 -0
  265. package/package.json +38 -39
  266. package/dist/ChordVariantDisplay/index.d.ts +0 -2
  267. package/dist/ChordVariantDisplay/index.js +0 -25
  268. package/dist/ChordVariantDisplay/models/configSchema.d.ts +0 -12
  269. package/dist/ChordVariantDisplay/models/configSchema.js +0 -15
  270. package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts +0 -115
  271. package/dist/ChordVariantDisplay/models/stateModelFactory.js +0 -35
  272. package/dist/LinearVariantDisplay/configSchema.d.ts +0 -34
  273. package/dist/LinearVariantDisplay/configSchema.js +0 -12
  274. package/dist/LinearVariantDisplay/index.d.ts +0 -2
  275. package/dist/LinearVariantDisplay/index.js +0 -24
  276. package/dist/LinearVariantDisplay/model.d.ts +0 -278
  277. package/dist/LinearVariantDisplay/model.js +0 -37
  278. package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +0 -5
  279. package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +0 -29
  280. package/dist/MultiLinearVariantDisplay/configSchema.d.ts +0 -80
  281. package/dist/MultiLinearVariantDisplay/configSchema.js +0 -30
  282. package/dist/MultiLinearVariantDisplay/index.d.ts +0 -2
  283. package/dist/MultiLinearVariantDisplay/index.js +0 -57
  284. package/dist/MultiLinearVariantDisplay/model.d.ts +0 -422
  285. package/dist/MultiLinearVariantDisplay/model.js +0 -82
  286. package/dist/MultiLinearVariantDisplay/renderSvg.d.ts +0 -3
  287. package/dist/MultiLinearVariantDisplay/renderSvg.js +0 -15
  288. package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +0 -6
  289. package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +0 -83
  290. package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +0 -5
  291. package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +0 -31
  292. package/dist/MultiLinearVariantMatrixDisplay/configSchema.d.ts +0 -37
  293. package/dist/MultiLinearVariantMatrixDisplay/configSchema.js +0 -22
  294. package/dist/MultiLinearVariantMatrixDisplay/index.d.ts +0 -2
  295. package/dist/MultiLinearVariantMatrixDisplay/index.js +0 -24
  296. package/dist/MultiLinearVariantMatrixDisplay/model.d.ts +0 -431
  297. package/dist/MultiLinearVariantMatrixDisplay/model.js +0 -125
  298. package/dist/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +0 -3
  299. package/dist/MultiLinearVariantMatrixDisplay/renderSvg.js +0 -17
  300. package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +0 -37
  301. package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +0 -87
  302. package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +0 -8
  303. package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +0 -41
  304. package/dist/MultiLinearVariantMatrixRenderer/configSchema.d.ts +0 -2
  305. package/dist/MultiLinearVariantMatrixRenderer/configSchema.js +0 -6
  306. package/dist/MultiLinearVariantMatrixRenderer/index.d.ts +0 -2
  307. package/dist/MultiLinearVariantMatrixRenderer/index.js +0 -20
  308. package/dist/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +0 -14
  309. package/dist/MultiLinearVariantMatrixRenderer/makeImageData.js +0 -154
  310. package/dist/MultiLinearVariantMatrixRenderer/types.d.ts +0 -14
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  326. package/dist/MultiVariantBaseRenderer.d.ts +0 -46
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  328. package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.d.ts +0 -18
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  332. package/dist/SplitVcfTabixAdapter/index.d.ts +0 -3
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  334. package/dist/StructuralVariantChordRenderer/Chord.d.ts +0 -13
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  336. package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +0 -16
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  346. package/dist/VariantFeatureWidget/AltFormatter.d.ts +0 -4
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  348. package/dist/VariantFeatureWidget/Checkbox2.d.ts +0 -6
  349. package/dist/VariantFeatureWidget/Checkbox2.js +0 -8
  350. package/dist/VariantFeatureWidget/Formatter.d.ts +0 -3
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  352. package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
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  368. package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +0 -4
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  420. package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +0 -25
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  424. package/dist/VcfTabixAdapter/index.d.ts +0 -3
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  431. package/dist/index.d.ts +0 -7
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  439. package/dist/shared/components/AddFiltersDialog.d.ts +0 -9
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  443. package/dist/shared/components/MultiVariantBaseDisplayComponent.d.ts +0 -5
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  445. package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +0 -6
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  447. package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +0 -7
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  455. package/dist/shared/components/MultiVariantCrosshairs.d.ts +0 -7
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  457. package/dist/shared/components/MultiVariantLegendBar.d.ts +0 -7
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  459. package/dist/shared/components/MultiVariantTooltip.d.ts +0 -10
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  463. package/dist/shared/components/SetColorDialog.d.ts +0 -11
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  473. package/dist/shared/components/SetRowHeightDialog.d.ts +0 -8
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  477. package/dist/shared/components/SourcesGrid.d.ts +0 -7
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  511. package/esm/VariantFeatureWidget/Checkbox2.d.ts +0 -6
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  513. package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
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  523. package/esm/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
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  525. package/esm/extensionPoints.d.ts +0 -2
  526. package/esm/getMultiVariantFeaturesAutorun.d.ts +0 -18
  527. package/esm/shared/SharedVariantMixin.d.ts +0 -325
  528. package/esm/shared/SharedVariantMixin.js +0 -55
  529. package/esm/shared/components/ui/SetColorDialog.js +0 -45
  530. package/esm/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
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  532. package/esm/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
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  536. package/esm/shared/findSecondLargestNumber.d.ts +0 -0
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  538. package/esm/shared/util.d.ts +0 -2
  539. package/esm/shared/util.js +0 -17
@@ -1,29 +1,28 @@
1
1
  import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
2
- import type { Feature } from '@jbrowse/core/util';
3
- import type { Instance } from 'mobx-state-tree';
4
- export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
5
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
6
- type: import("mobx-state-tree").ISimpleType<string>;
7
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
8
- } & {
9
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
10
- } & {
11
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
12
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
13
- } & {
14
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
15
- key: import("mobx-state-tree").ISimpleType<string>;
16
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
17
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
18
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2
+ import type { Instance } from '@jbrowse/mobx-state-tree';
3
+ export default function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
4
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
6
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
7
+ } & {
8
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
9
+ } & {
10
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
11
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
12
+ } & {
13
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
14
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
15
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
16
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
17
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
20
19
  }, {
21
- stopToken: string | undefined;
20
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
22
21
  filled: boolean;
23
22
  reactElement: React.ReactElement | undefined;
24
- features: Map<string, Feature> | undefined;
23
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
25
24
  layout: any;
26
- status: string;
25
+ blockStatusMessage: string;
27
26
  error: unknown;
28
27
  message: string | undefined;
29
28
  maxHeightReached: boolean;
@@ -31,25 +30,32 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
31
30
  model: {
32
31
  error?: unknown;
33
32
  reload: () => void;
34
- message: React.ReactNode;
35
- filled?: boolean;
36
- status?: string;
33
+ message?: React.ReactNode;
34
+ statusMessage?: string;
37
35
  reactElement?: React.ReactElement;
36
+ isRenderingPending?: boolean;
38
37
  };
39
- }) => import("react/jsx-runtime").JSX.Element | undefined;
38
+ }) => import("react/jsx-runtime").JSX.Element;
40
39
  renderProps: any;
40
+ renderArgs: Record<string, unknown> | undefined;
41
+ isRenderingPending: boolean;
42
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
41
43
  } & {
42
44
  doReload(): void;
43
- afterAttach(): void;
44
- setStatus(message: string): void;
45
- setLoading(newStopToken: string): void;
45
+ setStatusMessage(message: string): void;
46
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
46
47
  setMessage(messageText: string): void;
47
48
  setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
48
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  setError(error: unknown): void;
49
50
  reload(): void;
51
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
50
52
  beforeDestroy(): void;
51
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
52
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
53
+ } & {
54
+ readonly statusMessage: any;
55
+ } & {
56
+ afterAttach(): void;
57
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
58
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
53
59
  maxFeatureScreenDensity: {
54
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  type: string;
55
61
  description: string;
@@ -76,41 +82,43 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
76
82
  description: string;
77
83
  defaultValue: never[];
78
84
  };
79
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
85
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
86
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
87
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
80
88
  } & {
81
- type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
82
- trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
83
- trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
84
- trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
85
- trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
89
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearFeatureDisplay">;
90
+ trackShowLabels: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
91
+ trackShowDescriptions: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
92
+ trackDisplayMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
93
+ trackMaxHeight: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
86
94
  configuration: AnyConfigurationSchemaType;
87
- jexlFilters: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
95
+ jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
88
96
  } & {
89
- type: import("mobx-state-tree").ISimpleType<"LinearVariantDisplay">;
97
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantDisplay">;
90
98
  configuration: AnyConfigurationSchemaType;
91
99
  }, {
92
100
  rendererTypeName: string;
93
101
  error: unknown;
94
- message: string | undefined;
102
+ statusMessage: string | undefined;
95
103
  } & {
96
104
  readonly RenderingComponent: React.FC<{
97
105
  model: {
98
106
  id: string;
99
107
  type: string;
100
108
  rpcDriverName: string | undefined;
101
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
109
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
102
110
  rendererTypeName: string;
103
111
  error: unknown;
104
- message: string | undefined;
105
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
106
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
107
- type: import("mobx-state-tree").ISimpleType<string>;
108
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
112
+ statusMessage: string | undefined;
113
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
114
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
115
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
116
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
109
117
  }, {
110
118
  rendererTypeName: string;
111
119
  error: unknown;
112
- message: string | undefined;
113
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
120
+ statusMessage: string | undefined;
121
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
114
122
  onHorizontalScroll?: () => void;
115
123
  blockState?: Record<string, any>;
116
124
  }>;
@@ -119,30 +127,142 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
119
127
  id: string;
120
128
  type: string;
121
129
  rpcDriverName: string | undefined;
122
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
130
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
123
131
  rendererTypeName: string;
124
132
  error: unknown;
125
- message: string | undefined;
126
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
127
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
128
- type: import("mobx-state-tree").ISimpleType<string>;
129
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
133
+ statusMessage: string | undefined;
134
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
135
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
136
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
137
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
130
138
  }, {
131
139
  rendererTypeName: string;
132
140
  error: unknown;
133
- message: string | undefined;
134
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
141
+ statusMessage: string | undefined;
142
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
135
143
  }> | null;
136
144
  readonly adapterConfig: any;
137
- readonly parentTrack: any;
145
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
146
+ readonly parentDisplay: any;
147
+ readonly effectiveRpcDriverName: any;
148
+ } & {
138
149
  renderProps(): any;
150
+ renderingProps(): {
151
+ displayModel: {
152
+ id: string;
153
+ type: string;
154
+ rpcDriverName: string | undefined;
155
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
156
+ rendererTypeName: string;
157
+ error: unknown;
158
+ statusMessage: string | undefined;
159
+ } & {
160
+ readonly RenderingComponent: React.FC<{
161
+ model: {
162
+ id: string;
163
+ type: string;
164
+ rpcDriverName: string | undefined;
165
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
166
+ rendererTypeName: string;
167
+ error: unknown;
168
+ statusMessage: string | undefined;
169
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
170
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
171
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
172
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
173
+ }, {
174
+ rendererTypeName: string;
175
+ error: unknown;
176
+ statusMessage: string | undefined;
177
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
178
+ onHorizontalScroll?: () => void;
179
+ blockState?: Record<string, any>;
180
+ }>;
181
+ readonly DisplayBlurb: React.FC<{
182
+ model: {
183
+ id: string;
184
+ type: string;
185
+ rpcDriverName: string | undefined;
186
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
187
+ rendererTypeName: string;
188
+ error: unknown;
189
+ statusMessage: string | undefined;
190
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
191
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
192
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
193
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
194
+ }, {
195
+ rendererTypeName: string;
196
+ error: unknown;
197
+ statusMessage: string | undefined;
198
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
199
+ }> | null;
200
+ readonly adapterConfig: any;
201
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
202
+ readonly parentDisplay: any;
203
+ readonly effectiveRpcDriverName: any;
204
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
205
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
206
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
207
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
208
+ }, {
209
+ rendererTypeName: string;
210
+ error: unknown;
211
+ statusMessage: string | undefined;
212
+ } & {
213
+ readonly RenderingComponent: React.FC<{
214
+ model: {
215
+ id: string;
216
+ type: string;
217
+ rpcDriverName: string | undefined;
218
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
219
+ rendererTypeName: string;
220
+ error: unknown;
221
+ statusMessage: string | undefined;
222
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
223
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
224
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
225
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
226
+ }, {
227
+ rendererTypeName: string;
228
+ error: unknown;
229
+ statusMessage: string | undefined;
230
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
231
+ onHorizontalScroll?: () => void;
232
+ blockState?: Record<string, any>;
233
+ }>;
234
+ readonly DisplayBlurb: React.FC<{
235
+ model: {
236
+ id: string;
237
+ type: string;
238
+ rpcDriverName: string | undefined;
239
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
240
+ rendererTypeName: string;
241
+ error: unknown;
242
+ statusMessage: string | undefined;
243
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
244
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
245
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
246
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
247
+ }, {
248
+ rendererTypeName: string;
249
+ error: unknown;
250
+ statusMessage: string | undefined;
251
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
252
+ }> | null;
253
+ readonly adapterConfig: any;
254
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
255
+ readonly parentDisplay: any;
256
+ readonly effectiveRpcDriverName: any;
257
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
258
+ };
139
259
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
140
260
  readonly DisplayMessageComponent: undefined | React.FC<any>;
141
261
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
142
262
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
143
263
  regionCannotBeRendered(): null;
144
264
  } & {
145
- setMessage(arg?: string): void;
265
+ setStatusMessage(arg?: string): void;
146
266
  setError(error?: unknown): void;
147
267
  setRpcDriverName(rpcDriverName: string): void;
148
268
  reload(): void;
@@ -177,13 +297,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
177
297
  readonly regionTooLarge: boolean;
178
298
  readonly regionTooLargeReason: string;
179
299
  } & {
180
- readonly statsReadyAndRegionNotTooLarge: boolean;
300
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
181
301
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
182
302
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
183
303
  } & {
184
304
  mouseoverExtraInformation: string | undefined;
185
305
  featureIdUnderMouse: undefined | string;
186
- contextMenuFeature: undefined | Feature;
306
+ subfeatureIdUnderMouse: undefined | string;
307
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
187
308
  } & {
188
309
  readonly DisplayMessageComponent: undefined | React.FC<any>;
189
310
  readonly blockType: "staticBlocks" | "dynamicBlocks";
@@ -191,88 +312,950 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
191
312
  } & {
192
313
  readonly renderDelay: number;
193
314
  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
315
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
316
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
194
317
  readonly selectedFeatureId: string | undefined;
195
- copyInfoToClipboard(feature: Feature): void;
196
- } & {
197
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
198
- readonly featureUnderMouse: Feature | undefined;
199
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
200
- label?: string;
201
- description?: string;
202
- refName: string;
203
- }]>;
318
+ readonly featureWidgetType: {
319
+ type: string;
320
+ id: string;
321
+ };
322
+ } & {
323
+ readonly showTooltipsEnabled: boolean;
324
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
325
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
326
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
327
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
204
328
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
205
- getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
206
- label?: string;
207
- description?: string;
208
- refName: string;
209
- }]) | undefined;
210
- searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
211
- label?: string;
212
- description?: string;
213
- refName: string;
214
- }]) | undefined;
329
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
330
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
331
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
215
332
  } & {
216
333
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
217
334
  deleteBlock(key: string): void;
218
- selectFeature(feature: Feature): void;
219
- navToFeature(feature: Feature): void;
335
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
336
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
220
337
  clearFeatureSelection(): void;
221
338
  setFeatureIdUnderMouse(feature?: string): void;
222
- setContextMenuFeature(feature?: Feature): void;
339
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
340
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
223
341
  setMouseoverExtraInformation(extra?: string): void;
342
+ setShowLegend(s: boolean): void;
343
+ setShowTooltips(arg: boolean): void;
224
344
  } & {
225
345
  reload(): Promise<void>;
346
+ } & {
347
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
348
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
226
349
  } & {
227
350
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
228
351
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
352
+ renderingProps(): {
353
+ displayModel: {
354
+ id: string;
355
+ type: string;
356
+ rpcDriverName: string | undefined;
357
+ heightPreConfig: number | undefined;
358
+ userBpPerPxLimit: number | undefined;
359
+ userByteSizeLimit: number | undefined;
360
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
361
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
362
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
363
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
364
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
365
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
366
+ }, {
367
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
368
+ filled: boolean;
369
+ reactElement: React.ReactElement | undefined;
370
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
371
+ layout: any;
372
+ blockStatusMessage: string;
373
+ error: unknown;
374
+ message: string | undefined;
375
+ maxHeightReached: boolean;
376
+ ReactComponent: ({ model, }: {
377
+ model: {
378
+ error?: unknown;
379
+ reload: () => void;
380
+ message?: React.ReactNode;
381
+ statusMessage?: string;
382
+ reactElement?: React.ReactElement;
383
+ isRenderingPending?: boolean;
384
+ };
385
+ }) => import("react/jsx-runtime").JSX.Element;
386
+ renderProps: any;
387
+ renderArgs: Record<string, unknown> | undefined;
388
+ isRenderingPending: boolean;
389
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
390
+ } & {
391
+ doReload(): void;
392
+ setStatusMessage(message: string): void;
393
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
394
+ setMessage(messageText: string): void;
395
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
396
+ setError(error: unknown): void;
397
+ reload(): void;
398
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
399
+ beforeDestroy(): void;
400
+ } & {
401
+ readonly statusMessage: any;
402
+ } & {
403
+ afterAttach(): void;
404
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
405
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
406
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
407
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
408
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
409
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
410
+ }, {
411
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
412
+ filled: boolean;
413
+ reactElement: React.ReactElement | undefined;
414
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
415
+ layout: any;
416
+ blockStatusMessage: string;
417
+ error: unknown;
418
+ message: string | undefined;
419
+ maxHeightReached: boolean;
420
+ ReactComponent: ({ model, }: {
421
+ model: {
422
+ error?: unknown;
423
+ reload: () => void;
424
+ message?: React.ReactNode;
425
+ statusMessage?: string;
426
+ reactElement?: React.ReactElement;
427
+ isRenderingPending?: boolean;
428
+ };
429
+ }) => import("react/jsx-runtime").JSX.Element;
430
+ renderProps: any;
431
+ renderArgs: Record<string, unknown> | undefined;
432
+ isRenderingPending: boolean;
433
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
434
+ } & {
435
+ doReload(): void;
436
+ setStatusMessage(message: string): void;
437
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
438
+ setMessage(messageText: string): void;
439
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
440
+ setError(error: unknown): void;
441
+ reload(): void;
442
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
443
+ beforeDestroy(): void;
444
+ } & {
445
+ readonly statusMessage: any;
446
+ } & {
447
+ afterAttach(): void;
448
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
449
+ configuration: {
450
+ [x: string]: any;
451
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
452
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
453
+ [x: string]: any;
454
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
455
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
456
+ [x: string]: any;
457
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
458
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
459
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
460
+ maxFeatureScreenDensity: {
461
+ type: string;
462
+ description: string;
463
+ defaultValue: number;
464
+ };
465
+ fetchSizeLimit: {
466
+ type: string;
467
+ defaultValue: number;
468
+ description: string;
469
+ };
470
+ height: {
471
+ type: string;
472
+ defaultValue: number;
473
+ description: string;
474
+ };
475
+ mouseover: {
476
+ type: string;
477
+ description: string;
478
+ defaultValue: string;
479
+ contextVariable: string[];
480
+ };
481
+ jexlFilters: {
482
+ type: string;
483
+ description: string;
484
+ defaultValue: never[];
485
+ };
486
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
487
+ showLegend: boolean | undefined;
488
+ showTooltips: boolean | undefined;
489
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
490
+ rendererTypeName: string;
491
+ error: unknown;
492
+ statusMessage: string | undefined;
493
+ } & {
494
+ readonly RenderingComponent: React.FC<{
495
+ model: {
496
+ id: string;
497
+ type: string;
498
+ rpcDriverName: string | undefined;
499
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
500
+ rendererTypeName: string;
501
+ error: unknown;
502
+ statusMessage: string | undefined;
503
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
504
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
505
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
506
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
507
+ }, {
508
+ rendererTypeName: string;
509
+ error: unknown;
510
+ statusMessage: string | undefined;
511
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
512
+ onHorizontalScroll?: () => void;
513
+ blockState?: Record<string, any>;
514
+ }>;
515
+ readonly DisplayBlurb: React.FC<{
516
+ model: {
517
+ id: string;
518
+ type: string;
519
+ rpcDriverName: string | undefined;
520
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
521
+ rendererTypeName: string;
522
+ error: unknown;
523
+ statusMessage: string | undefined;
524
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
525
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
526
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
527
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
528
+ }, {
529
+ rendererTypeName: string;
530
+ error: unknown;
531
+ statusMessage: string | undefined;
532
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
533
+ }> | null;
534
+ readonly adapterConfig: any;
535
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
536
+ readonly parentDisplay: any;
537
+ readonly effectiveRpcDriverName: any;
538
+ } & {
539
+ renderProps(): any;
540
+ renderingProps(): {
541
+ displayModel: {
542
+ id: string;
543
+ type: string;
544
+ rpcDriverName: string | undefined;
545
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
546
+ rendererTypeName: string;
547
+ error: unknown;
548
+ statusMessage: string | undefined;
549
+ } & {
550
+ readonly RenderingComponent: React.FC<{
551
+ model: {
552
+ id: string;
553
+ type: string;
554
+ rpcDriverName: string | undefined;
555
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
556
+ rendererTypeName: string;
557
+ error: unknown;
558
+ statusMessage: string | undefined;
559
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
560
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
561
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
562
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
563
+ }, {
564
+ rendererTypeName: string;
565
+ error: unknown;
566
+ statusMessage: string | undefined;
567
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
568
+ onHorizontalScroll?: () => void;
569
+ blockState?: Record<string, any>;
570
+ }>;
571
+ readonly DisplayBlurb: React.FC<{
572
+ model: {
573
+ id: string;
574
+ type: string;
575
+ rpcDriverName: string | undefined;
576
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
577
+ rendererTypeName: string;
578
+ error: unknown;
579
+ statusMessage: string | undefined;
580
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
581
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
582
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
583
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
584
+ }, {
585
+ rendererTypeName: string;
586
+ error: unknown;
587
+ statusMessage: string | undefined;
588
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
589
+ }> | null;
590
+ readonly adapterConfig: any;
591
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
592
+ readonly parentDisplay: any;
593
+ readonly effectiveRpcDriverName: any;
594
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
595
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
596
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
597
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
598
+ }, {
599
+ rendererTypeName: string;
600
+ error: unknown;
601
+ statusMessage: string | undefined;
602
+ } & {
603
+ readonly RenderingComponent: React.FC<{
604
+ model: {
605
+ id: string;
606
+ type: string;
607
+ rpcDriverName: string | undefined;
608
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
609
+ rendererTypeName: string;
610
+ error: unknown;
611
+ statusMessage: string | undefined;
612
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
613
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
614
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
615
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
616
+ }, {
617
+ rendererTypeName: string;
618
+ error: unknown;
619
+ statusMessage: string | undefined;
620
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
621
+ onHorizontalScroll?: () => void;
622
+ blockState?: Record<string, any>;
623
+ }>;
624
+ readonly DisplayBlurb: React.FC<{
625
+ model: {
626
+ id: string;
627
+ type: string;
628
+ rpcDriverName: string | undefined;
629
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
630
+ rendererTypeName: string;
631
+ error: unknown;
632
+ statusMessage: string | undefined;
633
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
634
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
635
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
636
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
637
+ }, {
638
+ rendererTypeName: string;
639
+ error: unknown;
640
+ statusMessage: string | undefined;
641
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
642
+ }> | null;
643
+ readonly adapterConfig: any;
644
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
645
+ readonly parentDisplay: any;
646
+ readonly effectiveRpcDriverName: any;
647
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
648
+ };
649
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
650
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
651
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
652
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
653
+ regionCannotBeRendered(): null;
654
+ } & {
655
+ setStatusMessage(arg?: string): void;
656
+ setError(error?: unknown): void;
657
+ setRpcDriverName(rpcDriverName: string): void;
658
+ reload(): void;
659
+ } & {
660
+ scrollTop: number;
661
+ } & {
662
+ readonly height: number;
663
+ } & {
664
+ setScrollTop(scrollTop: number): void;
665
+ setHeight(displayHeight: number): number;
666
+ resizeHeight(distance: number): number;
667
+ } & {
668
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
669
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
670
+ currStatsBpPerPx: number;
671
+ } & {
672
+ readonly currentBytesRequested: number;
673
+ readonly currentFeatureScreenDensity: number;
674
+ readonly maxFeatureScreenDensity: any;
675
+ readonly featureDensityStatsReady: boolean;
676
+ readonly maxAllowableBytes: number;
677
+ } & {
678
+ afterAttach(): void;
679
+ } & {
680
+ setCurrStatsBpPerPx(n: number): void;
681
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
682
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
683
+ setFeatureDensityStatsP(arg: any): void;
684
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
685
+ clearFeatureDensityStats(): void;
686
+ } & {
687
+ readonly regionTooLarge: boolean;
688
+ readonly regionTooLargeReason: string;
689
+ } & {
690
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
691
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
692
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
693
+ } & {
694
+ mouseoverExtraInformation: string | undefined;
695
+ featureIdUnderMouse: undefined | string;
696
+ subfeatureIdUnderMouse: undefined | string;
697
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
698
+ } & {
699
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
700
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
701
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
702
+ } & {
703
+ readonly renderDelay: number;
704
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
705
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
706
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
707
+ readonly selectedFeatureId: string | undefined;
708
+ readonly featureWidgetType: {
709
+ type: string;
710
+ id: string;
711
+ };
712
+ } & {
713
+ readonly showTooltipsEnabled: boolean;
714
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
715
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
716
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
717
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
718
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
719
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
720
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
721
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
722
+ } & {
723
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
724
+ deleteBlock(key: string): void;
725
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
726
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
727
+ clearFeatureSelection(): void;
728
+ setFeatureIdUnderMouse(feature?: string): void;
729
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
730
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
731
+ setMouseoverExtraInformation(extra?: string): void;
732
+ setShowLegend(s: boolean): void;
733
+ setShowTooltips(arg: boolean): void;
734
+ } & {
735
+ reload(): Promise<void>;
736
+ } & {
737
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
738
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
739
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
740
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
741
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
742
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
743
+ } & {
744
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
745
+ } & {
746
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
747
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
748
+ } & {
749
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
750
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
751
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
752
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
753
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
754
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
755
+ }, {
756
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
757
+ filled: boolean;
758
+ reactElement: React.ReactElement | undefined;
759
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
760
+ layout: any;
761
+ blockStatusMessage: string;
762
+ error: unknown;
763
+ message: string | undefined;
764
+ maxHeightReached: boolean;
765
+ ReactComponent: ({ model, }: {
766
+ model: {
767
+ error?: unknown;
768
+ reload: () => void;
769
+ message?: React.ReactNode;
770
+ statusMessage?: string;
771
+ reactElement?: React.ReactElement;
772
+ isRenderingPending?: boolean;
773
+ };
774
+ }) => import("react/jsx-runtime").JSX.Element;
775
+ renderProps: any;
776
+ renderArgs: Record<string, unknown> | undefined;
777
+ isRenderingPending: boolean;
778
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
779
+ } & {
780
+ doReload(): void;
781
+ setStatusMessage(message: string): void;
782
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
783
+ setMessage(messageText: string): void;
784
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
785
+ setError(error: unknown): void;
786
+ reload(): void;
787
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
788
+ beforeDestroy(): void;
789
+ } & {
790
+ readonly statusMessage: any;
791
+ } & {
792
+ afterAttach(): void;
793
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
794
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
795
+ maxFeatureScreenDensity: {
796
+ type: string;
797
+ description: string;
798
+ defaultValue: number;
799
+ };
800
+ fetchSizeLimit: {
801
+ type: string;
802
+ defaultValue: number;
803
+ description: string;
804
+ };
805
+ height: {
806
+ type: string;
807
+ defaultValue: number;
808
+ description: string;
809
+ };
810
+ mouseover: {
811
+ type: string;
812
+ description: string;
813
+ defaultValue: string;
814
+ contextVariable: string[];
815
+ };
816
+ jexlFilters: {
817
+ type: string;
818
+ description: string;
819
+ defaultValue: never[];
820
+ };
821
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
822
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
823
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
824
+ }, {
825
+ rendererTypeName: string;
826
+ error: unknown;
827
+ statusMessage: string | undefined;
828
+ } & {
829
+ readonly RenderingComponent: React.FC<{
830
+ model: {
831
+ id: string;
832
+ type: string;
833
+ rpcDriverName: string | undefined;
834
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
835
+ rendererTypeName: string;
836
+ error: unknown;
837
+ statusMessage: string | undefined;
838
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
839
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
840
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
841
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
842
+ }, {
843
+ rendererTypeName: string;
844
+ error: unknown;
845
+ statusMessage: string | undefined;
846
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
847
+ onHorizontalScroll?: () => void;
848
+ blockState?: Record<string, any>;
849
+ }>;
850
+ readonly DisplayBlurb: React.FC<{
851
+ model: {
852
+ id: string;
853
+ type: string;
854
+ rpcDriverName: string | undefined;
855
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
856
+ rendererTypeName: string;
857
+ error: unknown;
858
+ statusMessage: string | undefined;
859
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
860
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
861
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
862
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
863
+ }, {
864
+ rendererTypeName: string;
865
+ error: unknown;
866
+ statusMessage: string | undefined;
867
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
868
+ }> | null;
869
+ readonly adapterConfig: any;
870
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
871
+ readonly parentDisplay: any;
872
+ readonly effectiveRpcDriverName: any;
873
+ } & {
874
+ renderProps(): any;
875
+ renderingProps(): {
876
+ displayModel: {
877
+ id: string;
878
+ type: string;
879
+ rpcDriverName: string | undefined;
880
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
881
+ rendererTypeName: string;
882
+ error: unknown;
883
+ statusMessage: string | undefined;
884
+ } & {
885
+ readonly RenderingComponent: React.FC<{
886
+ model: {
887
+ id: string;
888
+ type: string;
889
+ rpcDriverName: string | undefined;
890
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
891
+ rendererTypeName: string;
892
+ error: unknown;
893
+ statusMessage: string | undefined;
894
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
895
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
896
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
897
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
898
+ }, {
899
+ rendererTypeName: string;
900
+ error: unknown;
901
+ statusMessage: string | undefined;
902
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
903
+ onHorizontalScroll?: () => void;
904
+ blockState?: Record<string, any>;
905
+ }>;
906
+ readonly DisplayBlurb: React.FC<{
907
+ model: {
908
+ id: string;
909
+ type: string;
910
+ rpcDriverName: string | undefined;
911
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
912
+ rendererTypeName: string;
913
+ error: unknown;
914
+ statusMessage: string | undefined;
915
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
916
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
917
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
918
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
919
+ }, {
920
+ rendererTypeName: string;
921
+ error: unknown;
922
+ statusMessage: string | undefined;
923
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
924
+ }> | null;
925
+ readonly adapterConfig: any;
926
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
927
+ readonly parentDisplay: any;
928
+ readonly effectiveRpcDriverName: any;
929
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
930
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
931
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
932
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
933
+ }, {
934
+ rendererTypeName: string;
935
+ error: unknown;
936
+ statusMessage: string | undefined;
937
+ } & {
938
+ readonly RenderingComponent: React.FC<{
939
+ model: {
940
+ id: string;
941
+ type: string;
942
+ rpcDriverName: string | undefined;
943
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
944
+ rendererTypeName: string;
945
+ error: unknown;
946
+ statusMessage: string | undefined;
947
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
948
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
949
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
950
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
951
+ }, {
952
+ rendererTypeName: string;
953
+ error: unknown;
954
+ statusMessage: string | undefined;
955
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
956
+ onHorizontalScroll?: () => void;
957
+ blockState?: Record<string, any>;
958
+ }>;
959
+ readonly DisplayBlurb: React.FC<{
960
+ model: {
961
+ id: string;
962
+ type: string;
963
+ rpcDriverName: string | undefined;
964
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
965
+ rendererTypeName: string;
966
+ error: unknown;
967
+ statusMessage: string | undefined;
968
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
969
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
970
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
971
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
972
+ }, {
973
+ rendererTypeName: string;
974
+ error: unknown;
975
+ statusMessage: string | undefined;
976
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
977
+ }> | null;
978
+ readonly adapterConfig: any;
979
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
980
+ readonly parentDisplay: any;
981
+ readonly effectiveRpcDriverName: any;
982
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
983
+ };
984
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
985
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
986
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
987
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
988
+ regionCannotBeRendered(): null;
989
+ } & {
990
+ setStatusMessage(arg?: string): void;
991
+ setError(error?: unknown): void;
992
+ setRpcDriverName(rpcDriverName: string): void;
993
+ reload(): void;
994
+ } & {
995
+ scrollTop: number;
996
+ } & {
997
+ readonly height: number;
998
+ } & {
999
+ setScrollTop(scrollTop: number): void;
1000
+ setHeight(displayHeight: number): number;
1001
+ resizeHeight(distance: number): number;
1002
+ } & {
1003
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1004
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1005
+ currStatsBpPerPx: number;
1006
+ } & {
1007
+ readonly currentBytesRequested: number;
1008
+ readonly currentFeatureScreenDensity: number;
1009
+ readonly maxFeatureScreenDensity: any;
1010
+ readonly featureDensityStatsReady: boolean;
1011
+ readonly maxAllowableBytes: number;
1012
+ } & {
1013
+ afterAttach(): void;
1014
+ } & {
1015
+ setCurrStatsBpPerPx(n: number): void;
1016
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1017
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1018
+ setFeatureDensityStatsP(arg: any): void;
1019
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1020
+ clearFeatureDensityStats(): void;
1021
+ } & {
1022
+ readonly regionTooLarge: boolean;
1023
+ readonly regionTooLargeReason: string;
1024
+ } & {
1025
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1026
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1027
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1028
+ } & {
1029
+ mouseoverExtraInformation: string | undefined;
1030
+ featureIdUnderMouse: undefined | string;
1031
+ subfeatureIdUnderMouse: undefined | string;
1032
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1033
+ } & {
1034
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1035
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1036
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1037
+ } & {
1038
+ readonly renderDelay: number;
1039
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1040
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1041
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1042
+ readonly selectedFeatureId: string | undefined;
1043
+ readonly featureWidgetType: {
1044
+ type: string;
1045
+ id: string;
1046
+ };
1047
+ } & {
1048
+ readonly showTooltipsEnabled: boolean;
1049
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1050
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1051
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1052
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
1053
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1054
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
1055
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
1056
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
1057
+ } & {
1058
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1059
+ deleteBlock(key: string): void;
1060
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1061
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1062
+ clearFeatureSelection(): void;
1063
+ setFeatureIdUnderMouse(feature?: string): void;
1064
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1065
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1066
+ setMouseoverExtraInformation(extra?: string): void;
1067
+ setShowLegend(s: boolean): void;
1068
+ setShowTooltips(arg: boolean): void;
1069
+ } & {
1070
+ reload(): Promise<void>;
1071
+ } & {
1072
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1073
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1074
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1075
+ onMouseMove(_: unknown, featureId?: string): void;
1076
+ onMouseLeave(_: unknown): void;
1077
+ onContextMenu(_: unknown): void;
1078
+ };
229
1079
  renderProps(): any;
230
1080
  } & {
231
1081
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
232
1082
  afterAttach(): void;
1083
+ } & {
1084
+ featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
233
1085
  } & {
234
1086
  readonly activeFilters: any;
235
1087
  readonly rendererTypeName: any;
1088
+ readonly sequenceAdapter: any;
236
1089
  readonly showLabels: any;
237
1090
  readonly showDescriptions: any;
238
1091
  readonly maxHeight: any;
239
1092
  readonly displayMode: any;
240
1093
  } & {
241
1094
  readonly rendererConfig: {
242
- [x: string]: any;
243
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
244
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
245
- [x: string]: any;
246
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
247
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
248
- [x: string]: any;
249
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
250
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
251
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
1095
+ showLabels: any;
1096
+ showDescriptions: any;
1097
+ displayMode: any;
1098
+ maxHeight: any;
1099
+ };
252
1100
  } & {
253
1101
  setJexlFilters(f?: string[]): void;
1102
+ setFeatureUnderMouse(feat?: import("@jbrowse/core/util").Feature): void;
254
1103
  toggleShowLabels(): void;
255
1104
  toggleShowDescriptions(): void;
256
1105
  setDisplayMode(val: string): void;
257
1106
  setMaxHeight(val?: number): void;
1107
+ } & {
1108
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
258
1109
  } & {
259
1110
  renderProps(): {
260
1111
  config: {
261
- [x: string]: any;
262
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
263
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
264
- [x: string]: any;
265
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
266
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
267
- [x: string]: any;
268
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
269
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
270
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
1112
+ showLabels: any;
1113
+ showDescriptions: any;
1114
+ displayMode: any;
1115
+ maxHeight: any;
1116
+ };
271
1117
  filters: import("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain").default;
1118
+ sequenceAdapter: any;
1119
+ };
1120
+ renderingProps(): {
1121
+ onFeatureClick(_: unknown, featureId?: string): Promise<void>;
1122
+ onFeatureContextMenu(_: unknown, featureId?: string): Promise<void>;
1123
+ displayModel: {
1124
+ id: string;
1125
+ type: string;
1126
+ rpcDriverName: string | undefined;
1127
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1128
+ rendererTypeName: string;
1129
+ error: unknown;
1130
+ statusMessage: string | undefined;
1131
+ } & {
1132
+ readonly RenderingComponent: React.FC<{
1133
+ model: {
1134
+ id: string;
1135
+ type: string;
1136
+ rpcDriverName: string | undefined;
1137
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1138
+ rendererTypeName: string;
1139
+ error: unknown;
1140
+ statusMessage: string | undefined;
1141
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1142
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1143
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1144
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1145
+ }, {
1146
+ rendererTypeName: string;
1147
+ error: unknown;
1148
+ statusMessage: string | undefined;
1149
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1150
+ onHorizontalScroll?: () => void;
1151
+ blockState?: Record<string, any>;
1152
+ }>;
1153
+ readonly DisplayBlurb: React.FC<{
1154
+ model: {
1155
+ id: string;
1156
+ type: string;
1157
+ rpcDriverName: string | undefined;
1158
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1159
+ rendererTypeName: string;
1160
+ error: unknown;
1161
+ statusMessage: string | undefined;
1162
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1163
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1164
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1165
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1166
+ }, {
1167
+ rendererTypeName: string;
1168
+ error: unknown;
1169
+ statusMessage: string | undefined;
1170
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1171
+ }> | null;
1172
+ readonly adapterConfig: any;
1173
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1174
+ readonly parentDisplay: any;
1175
+ readonly effectiveRpcDriverName: any;
1176
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1177
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1178
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1179
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1180
+ }, {
1181
+ rendererTypeName: string;
1182
+ error: unknown;
1183
+ statusMessage: string | undefined;
1184
+ } & {
1185
+ readonly RenderingComponent: React.FC<{
1186
+ model: {
1187
+ id: string;
1188
+ type: string;
1189
+ rpcDriverName: string | undefined;
1190
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1191
+ rendererTypeName: string;
1192
+ error: unknown;
1193
+ statusMessage: string | undefined;
1194
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1195
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1196
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1197
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1198
+ }, {
1199
+ rendererTypeName: string;
1200
+ error: unknown;
1201
+ statusMessage: string | undefined;
1202
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1203
+ onHorizontalScroll?: () => void;
1204
+ blockState?: Record<string, any>;
1205
+ }>;
1206
+ readonly DisplayBlurb: React.FC<{
1207
+ model: {
1208
+ id: string;
1209
+ type: string;
1210
+ rpcDriverName: string | undefined;
1211
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1212
+ rendererTypeName: string;
1213
+ error: unknown;
1214
+ statusMessage: string | undefined;
1215
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1216
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1217
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1218
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1219
+ }, {
1220
+ rendererTypeName: string;
1221
+ error: unknown;
1222
+ statusMessage: string | undefined;
1223
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1224
+ }> | null;
1225
+ readonly adapterConfig: any;
1226
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1227
+ readonly parentDisplay: any;
1228
+ readonly effectiveRpcDriverName: any;
1229
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
272
1230
  };
273
1231
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
274
1232
  } & {
275
- selectFeature(feature: Feature): Promise<void>;
276
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
1233
+ readonly featureWidgetType: {
1234
+ type: string;
1235
+ id: string;
1236
+ };
1237
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
1238
+ id: string;
1239
+ type: "LinearFeatureDisplay";
1240
+ rpcDriverName: string | undefined;
1241
+ heightPreConfig: number | undefined;
1242
+ userBpPerPxLimit: number | undefined;
1243
+ userByteSizeLimit: number | undefined;
1244
+ blockState: import("mobx").IKeyValueMap<import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
1245
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1246
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1247
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1248
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1249
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1250
+ }>>;
1251
+ configuration: import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>;
1252
+ showLegend: boolean | undefined;
1253
+ showTooltips: boolean | undefined;
1254
+ trackShowLabels: boolean | undefined;
1255
+ trackShowDescriptions: boolean | undefined;
1256
+ trackDisplayMode: string | undefined;
1257
+ trackMaxHeight: number | undefined;
1258
+ jexlFilters: string[] | undefined;
1259
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized>;
277
1260
  export type LinearVariantDisplayStateModel = ReturnType<typeof stateModelFactory>;
278
1261
  export type LinearVariantDisplayModel = Instance<LinearVariantDisplayStateModel>;