@jbrowse/plugin-variants 3.7.0 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/ChordVariantDisplay/components/ChordVariantDisplay.d.ts +11 -0
- package/esm/ChordVariantDisplay/components/ChordVariantDisplay.js +16 -0
- package/esm/ChordVariantDisplay/components/DisplayError.d.ts +9 -0
- package/esm/ChordVariantDisplay/components/DisplayError.js +7 -0
- package/esm/ChordVariantDisplay/components/Loading.d.ts +8 -0
- package/esm/ChordVariantDisplay/components/Loading.js +28 -0
- package/esm/ChordVariantDisplay/index.js +4 -4
- package/esm/ChordVariantDisplay/models/configSchema.d.ts +4 -5
- package/esm/ChordVariantDisplay/models/configSchema.js +10 -5
- package/esm/ChordVariantDisplay/models/renderReaction.d.ts +30 -0
- package/esm/ChordVariantDisplay/models/renderReaction.js +48 -0
- package/esm/ChordVariantDisplay/models/renderSvg.d.ts +6 -0
- package/esm/ChordVariantDisplay/models/renderSvg.js +12 -0
- package/esm/ChordVariantDisplay/models/stateModelFactory.d.ts +535 -46
- package/esm/ChordVariantDisplay/models/stateModelFactory.js +146 -8
- package/esm/LinearVariantDisplay/configSchema.d.ts +5 -5
- package/esm/LinearVariantDisplay/configSchema.js +2 -2
- package/esm/LinearVariantDisplay/index.js +6 -4
- package/esm/LinearVariantDisplay/model.d.ts +1086 -103
- package/esm/LinearVariantDisplay/model.js +10 -26
- package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +8 -18
- package/esm/MultiLinearVariantDisplay/configSchema.d.ts +6 -44
- package/esm/MultiLinearVariantDisplay/configSchema.js +2 -2
- package/esm/MultiLinearVariantDisplay/index.js +4 -3
- package/esm/MultiLinearVariantDisplay/model.d.ts +1031 -125
- package/esm/MultiLinearVariantDisplay/model.js +3 -23
- package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearVariantDisplay/renderSvg.js +4 -4
- package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +8 -2
- package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +26 -23
- package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +9 -20
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +6 -6
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/index.js +5 -4
- package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +1110 -131
- package/esm/MultiLinearVariantMatrixDisplay/model.js +22 -48
- package/esm/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/renderSvg.js +3 -3
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +4 -35
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +19 -33
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +12 -1
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +48 -22
- package/esm/MultiLinearVariantMatrixRenderer/configSchema.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixRenderer/index.js +4 -4
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +10 -2
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +155 -135
- package/esm/MultiLinearVariantMatrixRenderer/types.d.ts +2 -14
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +3 -60
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +9 -18
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +7 -6
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +30 -26
- package/esm/MultiLinearVariantRenderer/configSchema.d.ts +1 -1
- package/esm/MultiLinearVariantRenderer/index.js +4 -4
- package/esm/MultiLinearVariantRenderer/makeImageData.d.ts +14 -11
- package/esm/MultiLinearVariantRenderer/makeImageData.js +127 -110
- package/esm/MultiLinearVariantRenderer/types.d.ts +3 -20
- package/esm/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +1 -1
- package/esm/SplitVcfTabixAdapter/configSchema.d.ts +2 -2
- package/esm/SplitVcfTabixAdapter/index.d.ts +1 -1
- package/esm/SplitVcfTabixAdapter/index.js +3 -3
- package/esm/StructuralVariantChordRenderer/Chord.d.ts +1 -1
- package/esm/StructuralVariantChordRenderer/Chord.js +41 -58
- package/esm/StructuralVariantChordRenderer/ReactComponent.d.ts +3 -3
- package/esm/StructuralVariantChordRenderer/ReactComponent.js +3 -3
- package/esm/StructuralVariantChordRenderer/configSchema.d.ts +2 -2
- package/esm/StructuralVariantChordRenderer/index.js +3 -3
- package/esm/Tooltip.js +2 -2
- package/esm/VariantFeatureWidget/AltFormatter.js +1 -1
- package/esm/VariantFeatureWidget/Formatter.js +2 -2
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.d.ts +1 -0
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.js +1 -0
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +1 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +8 -23
- package/esm/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +1 -1
- package/esm/VariantFeatureWidget/VariantFeatureWidget.d.ts +1 -1
- package/esm/VariantFeatureWidget/VariantFeatureWidget.js +16 -29
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +5 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +68 -59
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +13 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +1 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +72 -30
- package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +2 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +49 -26
- package/esm/VariantFeatureWidget/VariantSampleGrid/types.d.ts +3 -5
- package/esm/VariantFeatureWidget/configSchema.d.ts +1 -1
- package/esm/VariantFeatureWidget/index.js +3 -3
- package/esm/VariantFeatureWidget/stateModelFactory.d.ts +39 -39
- package/esm/VariantFeatureWidget/stateModelFactory.js +1 -1
- package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +2 -7
- package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.js +3 -14
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +4 -2
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +2 -5
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +2 -2
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +34 -19
- package/esm/VariantRPC/MultiVariantGetSources.js +2 -6
- package/esm/VariantRPC/executeClusterGenotypeMatrix.d.ts +22 -0
- package/esm/VariantRPC/executeClusterGenotypeMatrix.js +19 -0
- package/esm/VariantRPC/getGenotypeMatrix.d.ts +18 -3
- package/esm/VariantRPC/getGenotypeMatrix.js +23 -40
- package/esm/VariantRPC/types.d.ts +10 -24
- package/esm/VariantTrack/configSchema.d.ts +16 -11
- package/esm/VariantTrack/index.js +13 -2
- package/esm/VariantTrack/saveTrackFormats/vcf.d.ts +4 -0
- package/esm/VariantTrack/saveTrackFormats/vcf.js +15 -0
- package/esm/VcfAdapter/VcfAdapter.d.ts +6 -3
- package/esm/VcfAdapter/VcfAdapter.js +36 -24
- package/esm/VcfAdapter/configSchema.d.ts +2 -2
- package/esm/VcfAdapter/index.js +3 -2
- package/esm/VcfExtensionPoints/index.d.ts +2 -0
- package/esm/{extensionPoints.js → VcfExtensionPoints/index.js} +1 -1
- package/esm/VcfFeature/index.js +20 -8
- package/esm/VcfFeature/util.d.ts +0 -1
- package/esm/VcfFeature/util.js +70 -188
- package/esm/VcfTabixAdapter/VcfTabixAdapter.d.ts +2 -0
- package/esm/VcfTabixAdapter/VcfTabixAdapter.js +28 -3
- package/esm/VcfTabixAdapter/configSchema.d.ts +5 -5
- package/esm/VcfTabixAdapter/configSchema.js +1 -1
- package/esm/VcfTabixAdapter/index.d.ts +1 -1
- package/esm/VcfTabixAdapter/index.js +4 -3
- package/esm/d3-hierarchy2/accessors.d.ts +2 -0
- package/esm/d3-hierarchy2/accessors.js +8 -0
- package/esm/d3-hierarchy2/array.d.ts +2 -0
- package/esm/d3-hierarchy2/array.js +15 -0
- package/esm/d3-hierarchy2/cluster.d.ts +8 -0
- package/esm/d3-hierarchy2/cluster.js +63 -0
- package/esm/d3-hierarchy2/constant.d.ts +2 -0
- package/esm/d3-hierarchy2/constant.js +8 -0
- package/esm/d3-hierarchy2/hierarchy/ancestors.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/ancestors.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/count.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/count.js +12 -0
- package/esm/d3-hierarchy2/hierarchy/descendants.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/descendants.js +3 -0
- package/esm/d3-hierarchy2/hierarchy/each.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/each.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/eachAfter.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/eachAfter.js +15 -0
- package/esm/d3-hierarchy2/hierarchy/eachBefore.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/eachBefore.js +12 -0
- package/esm/d3-hierarchy2/hierarchy/find.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/find.js +8 -0
- package/esm/d3-hierarchy2/hierarchy/index.d.ts +3 -0
- package/esm/d3-hierarchy2/hierarchy/index.js +78 -0
- package/esm/d3-hierarchy2/hierarchy/iterator.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/iterator.js +14 -0
- package/esm/d3-hierarchy2/hierarchy/leaves.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/leaves.js +9 -0
- package/esm/d3-hierarchy2/hierarchy/links.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/links.js +9 -0
- package/esm/d3-hierarchy2/hierarchy/path.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/path.js +26 -0
- package/esm/d3-hierarchy2/hierarchy/sort.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/sort.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/sum.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/sum.js +8 -0
- package/esm/d3-hierarchy2/index.d.ts +15 -0
- package/esm/d3-hierarchy2/index.js +15 -0
- package/esm/d3-hierarchy2/lcg.d.ts +1 -0
- package/esm/d3-hierarchy2/lcg.js +7 -0
- package/esm/d3-hierarchy2/pack/enclose.d.ts +10 -0
- package/esm/d3-hierarchy2/pack/enclose.js +84 -0
- package/esm/d3-hierarchy2/pack/index.d.ts +7 -0
- package/esm/d3-hierarchy2/pack/index.js +68 -0
- package/esm/d3-hierarchy2/pack/siblings.d.ts +2 -0
- package/esm/d3-hierarchy2/pack/siblings.js +94 -0
- package/esm/d3-hierarchy2/partition.d.ts +6 -0
- package/esm/d3-hierarchy2/partition.js +42 -0
- package/esm/d3-hierarchy2/stratify.d.ts +9 -0
- package/esm/d3-hierarchy2/stratify.js +115 -0
- package/esm/d3-hierarchy2/tree.d.ts +8 -0
- package/esm/d3-hierarchy2/tree.js +153 -0
- package/esm/d3-hierarchy2/treemap/binary.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/binary.js +36 -0
- package/esm/d3-hierarchy2/treemap/dice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/dice.js +7 -0
- package/esm/d3-hierarchy2/treemap/index.d.ts +17 -0
- package/esm/d3-hierarchy2/treemap/index.js +72 -0
- package/esm/d3-hierarchy2/treemap/resquarify.d.ts +5 -0
- package/esm/d3-hierarchy2/treemap/resquarify.js +28 -0
- package/esm/d3-hierarchy2/treemap/round.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/round.js +6 -0
- package/esm/d3-hierarchy2/treemap/slice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/slice.js +7 -0
- package/esm/d3-hierarchy2/treemap/sliceDice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/sliceDice.js +5 -0
- package/esm/d3-hierarchy2/treemap/squarify.d.ts +11 -0
- package/esm/d3-hierarchy2/treemap/squarify.js +46 -0
- package/esm/index.d.ts +1 -1
- package/esm/index.js +19 -22
- package/esm/shared/MultiVariantBaseModel.d.ts +1103 -117
- package/esm/shared/MultiVariantBaseModel.js +231 -65
- package/esm/shared/SharedVariantConfigSchema.d.ts +2 -40
- package/esm/shared/SharedVariantConfigSchema.js +1 -46
- package/esm/shared/components/AddFiltersDialog.d.ts +2 -3
- package/esm/shared/components/AddFiltersDialog.js +20 -28
- package/esm/shared/components/{ui/SetColorDialog.d.ts → BaseSetColorDialog.d.ts} +2 -1
- package/esm/shared/components/BaseSetColorDialog.js +61 -0
- package/esm/shared/components/ClearTreeWarningDialog.d.ts +4 -0
- package/esm/shared/components/ClearTreeWarningDialog.js +9 -0
- package/esm/shared/components/MAFFilterDialog.d.ts +2 -3
- package/esm/shared/components/MAFFilterDialog.js +4 -8
- package/esm/shared/components/MultiVariantBaseDisplayComponent.d.ts +1 -1
- package/esm/shared/components/MultiVariantBaseDisplayComponent.js +8 -17
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.js +3 -3
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +9 -14
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +11 -15
- package/esm/shared/components/MultiVariantClusterDialog/types.d.ts +3 -2
- package/esm/shared/components/MultiVariantColorLegend.d.ts +1 -1
- package/esm/shared/components/MultiVariantColorLegend.js +22 -12
- package/esm/shared/components/MultiVariantCrosshairs.d.ts +4 -2
- package/esm/shared/components/MultiVariantCrosshairs.js +31 -23
- package/esm/shared/components/MultiVariantLegendBar.d.ts +4 -4
- package/esm/shared/components/MultiVariantLegendBar.js +24 -22
- package/esm/shared/components/MultiVariantLegendBarWrapper.d.ts +7 -0
- package/esm/shared/components/MultiVariantLegendBarWrapper.js +18 -0
- package/esm/shared/components/MultiVariantTooltip.d.ts +5 -6
- package/esm/shared/components/MultiVariantTooltip.js +35 -17
- package/esm/shared/components/ScrollableVariantContainer.d.ts +8 -0
- package/esm/shared/components/ScrollableVariantContainer.js +23 -0
- package/esm/shared/components/SetColorDialog.d.ts +3 -2
- package/esm/shared/components/SetColorDialog.js +2 -2
- package/esm/shared/components/SetColorDialogBulkEditPanel.d.ts +7 -8
- package/esm/shared/components/SetColorDialogBulkEditPanel.js +24 -54
- package/esm/shared/components/SetColorDialogRowPalettizer.js +13 -23
- package/esm/shared/components/SetRowHeightDialog.d.ts +2 -3
- package/esm/shared/components/SourcesDataGrid.d.ts +1 -1
- package/esm/shared/components/SourcesDataGrid.js +1 -1
- package/esm/shared/components/SourcesGrid.d.ts +1 -1
- package/esm/shared/components/SourcesGrid.js +2 -2
- package/esm/shared/components/SourcesGridHeader.d.ts +1 -1
- package/esm/shared/components/SourcesGridHeader.js +1 -1
- package/esm/shared/components/SvgTree.d.ts +5 -0
- package/esm/shared/components/SvgTree.js +19 -0
- package/esm/shared/components/TreeSidebar.d.ts +5 -0
- package/esm/shared/components/TreeSidebar.js +121 -0
- package/esm/shared/components/types.d.ts +43 -0
- package/esm/shared/components/types.js +1 -0
- package/esm/shared/constants.d.ts +8 -2
- package/esm/shared/constants.js +11 -2
- package/esm/shared/drawAlleleCount.d.ts +2 -1
- package/esm/shared/drawAlleleCount.js +50 -16
- package/esm/shared/drawPhased.js +11 -12
- package/{dist → esm/shared}/getMultiVariantFeaturesAutorun.d.ts +5 -4
- package/esm/{getMultiVariantFeaturesAutorun.js → shared/getMultiVariantFeaturesAutorun.js} +9 -2
- package/esm/{getMultiVariantSourcesAutorun.d.ts → shared/getMultiVariantSourcesAutorun.d.ts} +4 -3
- package/esm/{getMultiVariantSourcesAutorun.js → shared/getMultiVariantSourcesAutorun.js} +10 -2
- package/esm/shared/getSources.d.ts +1 -1
- package/esm/shared/getSources.js +2 -2
- package/esm/shared/hooks/useMouseTracking.d.ts +6 -0
- package/esm/shared/hooks/useMouseTracking.js +34 -0
- package/esm/shared/makeSidebarSvg.d.ts +9 -0
- package/esm/shared/makeSidebarSvg.js +9 -0
- package/esm/shared/minorAlleleFrequencyUtils.d.ts +6 -5
- package/esm/shared/minorAlleleFrequencyUtils.js +37 -38
- package/esm/shared/setupMultiVariantAutoruns.d.ts +2 -0
- package/esm/shared/setupMultiVariantAutoruns.js +8 -0
- package/esm/shared/treeDrawingAutorun.d.ts +16 -0
- package/esm/shared/treeDrawingAutorun.js +71 -0
- package/esm/shared/types.d.ts +15 -0
- package/package.json +38 -39
- package/dist/ChordVariantDisplay/index.d.ts +0 -2
- package/dist/ChordVariantDisplay/index.js +0 -25
- package/dist/ChordVariantDisplay/models/configSchema.d.ts +0 -12
- package/dist/ChordVariantDisplay/models/configSchema.js +0 -15
- package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts +0 -115
- package/dist/ChordVariantDisplay/models/stateModelFactory.js +0 -35
- package/dist/LinearVariantDisplay/configSchema.d.ts +0 -34
- package/dist/LinearVariantDisplay/configSchema.js +0 -12
- package/dist/LinearVariantDisplay/index.d.ts +0 -2
- package/dist/LinearVariantDisplay/index.js +0 -24
- package/dist/LinearVariantDisplay/model.d.ts +0 -278
- package/dist/LinearVariantDisplay/model.js +0 -37
- package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +0 -29
- package/dist/MultiLinearVariantDisplay/configSchema.d.ts +0 -80
- package/dist/MultiLinearVariantDisplay/configSchema.js +0 -30
- package/dist/MultiLinearVariantDisplay/index.d.ts +0 -2
- package/dist/MultiLinearVariantDisplay/index.js +0 -57
- package/dist/MultiLinearVariantDisplay/model.d.ts +0 -422
- package/dist/MultiLinearVariantDisplay/model.js +0 -82
- package/dist/MultiLinearVariantDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearVariantDisplay/renderSvg.js +0 -15
- package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +0 -6
- package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +0 -83
- package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +0 -31
- package/dist/MultiLinearVariantMatrixDisplay/configSchema.d.ts +0 -37
- package/dist/MultiLinearVariantMatrixDisplay/configSchema.js +0 -22
- package/dist/MultiLinearVariantMatrixDisplay/index.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixDisplay/index.js +0 -24
- package/dist/MultiLinearVariantMatrixDisplay/model.d.ts +0 -431
- package/dist/MultiLinearVariantMatrixDisplay/model.js +0 -125
- package/dist/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearVariantMatrixDisplay/renderSvg.js +0 -17
- package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +0 -37
- package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +0 -87
- package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +0 -8
- package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +0 -41
- package/dist/MultiLinearVariantMatrixRenderer/configSchema.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixRenderer/configSchema.js +0 -6
- package/dist/MultiLinearVariantMatrixRenderer/index.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixRenderer/index.js +0 -20
- package/dist/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +0 -14
- package/dist/MultiLinearVariantMatrixRenderer/makeImageData.js +0 -154
- package/dist/MultiLinearVariantMatrixRenderer/types.d.ts +0 -14
- package/dist/MultiLinearVariantMatrixRenderer/types.js +0 -2
- package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +0 -63
- package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.js +0 -79
- package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +0 -33
- package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +0 -67
- package/dist/MultiLinearVariantRenderer/components/util.d.ts +0 -1
- package/dist/MultiLinearVariantRenderer/components/util.js +0 -15
- package/dist/MultiLinearVariantRenderer/configSchema.d.ts +0 -2
- package/dist/MultiLinearVariantRenderer/configSchema.js +0 -8
- package/dist/MultiLinearVariantRenderer/index.d.ts +0 -2
- package/dist/MultiLinearVariantRenderer/index.js +0 -19
- package/dist/MultiLinearVariantRenderer/makeImageData.d.ts +0 -14
- package/dist/MultiLinearVariantRenderer/makeImageData.js +0 -140
- package/dist/MultiLinearVariantRenderer/types.d.ts +0 -21
- package/dist/MultiLinearVariantRenderer/types.js +0 -2
- package/dist/MultiVariantBaseRenderer.d.ts +0 -46
- package/dist/MultiVariantBaseRenderer.js +0 -39
- package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.d.ts +0 -18
- package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +0 -92
- package/dist/SplitVcfTabixAdapter/configSchema.d.ts +0 -23
- package/dist/SplitVcfTabixAdapter/configSchema.js +0 -29
- package/dist/SplitVcfTabixAdapter/index.d.ts +0 -3
- package/dist/SplitVcfTabixAdapter/index.js +0 -52
- package/dist/StructuralVariantChordRenderer/Chord.d.ts +0 -13
- package/dist/StructuralVariantChordRenderer/Chord.js +0 -82
- package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +0 -16
- package/dist/StructuralVariantChordRenderer/ReactComponent.js +0 -30
- package/dist/StructuralVariantChordRenderer/configSchema.d.ts +0 -21
- package/dist/StructuralVariantChordRenderer/configSchema.js +0 -25
- package/dist/StructuralVariantChordRenderer/index.d.ts +0 -2
- package/dist/StructuralVariantChordRenderer/index.js +0 -18
- package/dist/StructuralVariantChordRenderer/types.d.ts +0 -17
- package/dist/StructuralVariantChordRenderer/types.js +0 -2
- package/dist/Tooltip.d.ts +0 -19
- package/dist/Tooltip.js +0 -32
- package/dist/VariantFeatureWidget/AltFormatter.d.ts +0 -4
- package/dist/VariantFeatureWidget/AltFormatter.js +0 -13
- package/dist/VariantFeatureWidget/Checkbox2.d.ts +0 -6
- package/dist/VariantFeatureWidget/Checkbox2.js +0 -8
- package/dist/VariantFeatureWidget/Formatter.d.ts +0 -3
- package/dist/VariantFeatureWidget/Formatter.js +0 -23
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js +0 -5
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js +0 -5
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +0 -7
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +0 -111
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js +0 -60
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/index.js +0 -8
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +0 -15
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGridWrapper.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGridWrapper.js +0 -18
- package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantFeatureWidget.js +0 -103
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +0 -4
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +0 -80
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.d.ts +0 -9
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +0 -10
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +0 -6
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +0 -54
- package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +0 -51
- package/dist/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantSampleGrid/index.js +0 -8
- package/dist/VariantFeatureWidget/VariantSampleGrid/types.d.ts +0 -21
- package/dist/VariantFeatureWidget/VariantSampleGrid/types.js +0 -2
- package/dist/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantSampleGrid/util.js +0 -14
- package/dist/VariantFeatureWidget/configSchema.d.ts +0 -1
- package/dist/VariantFeatureWidget/configSchema.js +0 -5
- package/dist/VariantFeatureWidget/index.d.ts +0 -2
- package/dist/VariantFeatureWidget/index.js +0 -52
- package/dist/VariantFeatureWidget/stateModelFactory.d.ts +0 -104
- package/dist/VariantFeatureWidget/stateModelFactory.js +0 -12
- package/dist/VariantFeatureWidget/types.d.ts +0 -16
- package/dist/VariantFeatureWidget/types.js +0 -2
- package/dist/VariantFeatureWidget/variantFieldDescriptions.d.ts +0 -9
- package/dist/VariantFeatureWidget/variantFieldDescriptions.js +0 -12
- package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +0 -14
- package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.js +0 -30
- package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +0 -6
- package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.js +0 -21
- package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +0 -19
- package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.js +0 -58
- package/dist/VariantRPC/MultiVariantGetSources.d.ts +0 -14
- package/dist/VariantRPC/MultiVariantGetSources.js +0 -22
- package/dist/VariantRPC/getGenotypeMatrix.d.ts +0 -6
- package/dist/VariantRPC/getGenotypeMatrix.js +0 -68
- package/dist/VariantRPC/types.d.ts +0 -36
- package/dist/VariantRPC/types.js +0 -2
- package/dist/VariantTrack/configSchema.d.ts +0 -79
- package/dist/VariantTrack/configSchema.js +0 -10
- package/dist/VariantTrack/index.d.ts +0 -2
- package/dist/VariantTrack/index.js +0 -20
- package/dist/VcfAdapter/VcfAdapter.d.ts +0 -35
- package/dist/VcfAdapter/VcfAdapter.js +0 -119
- package/dist/VcfAdapter/configSchema.d.ts +0 -18
- package/dist/VcfAdapter/configSchema.js +0 -35
- package/dist/VcfAdapter/index.d.ts +0 -2
- package/dist/VcfAdapter/index.js +0 -49
- package/dist/VcfAdapter/vcfParser.d.ts +0 -7
- package/dist/VcfAdapter/vcfParser.js +0 -26
- package/dist/VcfFeature/index.d.ts +0 -19
- package/dist/VcfFeature/index.js +0 -80
- package/dist/VcfFeature/util.d.ts +0 -6
- package/dist/VcfFeature/util.js +0 -227
- package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +0 -25
- package/dist/VcfTabixAdapter/VcfTabixAdapter.js +0 -117
- package/dist/VcfTabixAdapter/configSchema.d.ts +0 -32
- package/dist/VcfTabixAdapter/configSchema.js +0 -56
- package/dist/VcfTabixAdapter/index.d.ts +0 -3
- package/dist/VcfTabixAdapter/index.js +0 -52
- package/dist/extensionPoints.d.ts +0 -2
- package/dist/extensionPoints.js +0 -39
- package/dist/getMultiVariantFeaturesAutorun.js +0 -48
- package/dist/getMultiVariantSourcesAutorun.d.ts +0 -11
- package/dist/getMultiVariantSourcesAutorun.js +0 -38
- package/dist/index.d.ts +0 -7
- package/dist/index.js +0 -52
- package/dist/shared/MultiVariantBaseModel.d.ts +0 -413
- package/dist/shared/MultiVariantBaseModel.js +0 -373
- package/dist/shared/SharedVariantConfigSchema.d.ts +0 -66
- package/dist/shared/SharedVariantConfigSchema.js +0 -56
- package/dist/shared/SharedVariantMixin.d.ts +0 -325
- package/dist/shared/SharedVariantMixin.js +0 -58
- package/dist/shared/components/AddFiltersDialog.d.ts +0 -9
- package/dist/shared/components/AddFiltersDialog.js +0 -61
- package/dist/shared/components/MAFFilterDialog.d.ts +0 -8
- package/dist/shared/components/MAFFilterDialog.js +0 -28
- package/dist/shared/components/MultiVariantBaseDisplayComponent.d.ts +0 -5
- package/dist/shared/components/MultiVariantBaseDisplayComponent.js +0 -29
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +0 -6
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.js +0 -29
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +0 -7
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +0 -74
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +0 -7
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +0 -145
- package/dist/shared/components/MultiVariantClusterDialog/types.d.ts +0 -10
- package/dist/shared/components/MultiVariantClusterDialog/types.js +0 -2
- package/dist/shared/components/MultiVariantColorLegend.d.ts +0 -10
- package/dist/shared/components/MultiVariantColorLegend.js +0 -24
- package/dist/shared/components/MultiVariantCrosshairs.d.ts +0 -7
- package/dist/shared/components/MultiVariantCrosshairs.js +0 -40
- package/dist/shared/components/MultiVariantLegendBar.d.ts +0 -7
- package/dist/shared/components/MultiVariantLegendBar.js +0 -32
- package/dist/shared/components/MultiVariantTooltip.d.ts +0 -10
- package/dist/shared/components/MultiVariantTooltip.js +0 -24
- package/dist/shared/components/RectBg.d.ts +0 -8
- package/dist/shared/components/RectBg.js +0 -10
- package/dist/shared/components/SetColorDialog.d.ts +0 -11
- package/dist/shared/components/SetColorDialog.js +0 -12
- package/dist/shared/components/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/dist/shared/components/SetColorDialogBulkEditPanel.js +0 -84
- package/dist/shared/components/SetColorDialogHelpfulTips.d.ts +0 -1
- package/dist/shared/components/SetColorDialogHelpfulTips.js +0 -7
- package/dist/shared/components/SetColorDialogRowPalettizer.d.ts +0 -10
- package/dist/shared/components/SetColorDialogRowPalettizer.js +0 -41
- package/dist/shared/components/SetMinMaxDialog.d.ts +0 -10
- package/dist/shared/components/SetMinMaxDialog.js +0 -26
- package/dist/shared/components/SetRowHeightDialog.d.ts +0 -8
- package/dist/shared/components/SetRowHeightDialog.js +0 -18
- package/dist/shared/components/SourcesDataGrid.d.ts +0 -7
- package/dist/shared/components/SourcesDataGrid.js +0 -68
- package/dist/shared/components/SourcesGrid.d.ts +0 -7
- package/dist/shared/components/SourcesGrid.js +0 -14
- package/dist/shared/components/SourcesGridHeader.d.ts +0 -8
- package/dist/shared/components/SourcesGridHeader.js +0 -41
- package/dist/shared/components/ui/SetColorDialog.d.ts +0 -31
- package/dist/shared/components/ui/SetColorDialog.js +0 -51
- package/dist/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/dist/shared/components/ui/SetColorDialogBulkEditPanel.js +0 -84
- package/dist/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
- package/dist/shared/components/ui/SetColorDialogHelpfulTips.js +0 -7
- package/dist/shared/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
- package/dist/shared/components/ui/SetColorDialogRowPalettizer.js +0 -41
- package/dist/shared/constants.d.ts +0 -2
- package/dist/shared/constants.js +0 -5
- package/dist/shared/drawAlleleCount.d.ts +0 -2
- package/dist/shared/drawAlleleCount.js +0 -50
- package/dist/shared/drawPhased.d.ts +0 -1
- package/dist/shared/drawPhased.js +0 -25
- package/dist/shared/findSecondLargestNumber.d.ts +0 -0
- package/dist/shared/findSecondLargestNumber.js +0 -1
- package/dist/shared/getSources.d.ts +0 -15
- package/dist/shared/getSources.js +0 -34
- package/dist/shared/minorAlleleFrequencyUtils.d.ts +0 -14
- package/dist/shared/minorAlleleFrequencyUtils.js +0 -72
- package/dist/shared/sourcesGridUtils.d.ts +0 -11
- package/dist/shared/sourcesGridUtils.js +0 -32
- package/dist/shared/types.d.ts +0 -14
- package/dist/shared/types.js +0 -2
- package/dist/shared/util.d.ts +0 -2
- package/dist/shared/util.js +0 -21
- package/dist/util.d.ts +0 -0
- package/dist/util.js +0 -1
- package/esm/MultiVariantBaseRenderer.d.ts +0 -46
- package/esm/MultiVariantBaseRenderer.js +0 -33
- package/esm/VariantFeatureWidget/Checkbox2.d.ts +0 -6
- package/esm/VariantFeatureWidget/Checkbox2.js +0 -5
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js +0 -24
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.js +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/index.js +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/util.js +0 -11
- package/esm/extensionPoints.d.ts +0 -2
- package/esm/getMultiVariantFeaturesAutorun.d.ts +0 -18
- package/esm/shared/SharedVariantMixin.d.ts +0 -325
- package/esm/shared/SharedVariantMixin.js +0 -55
- package/esm/shared/components/ui/SetColorDialog.js +0 -45
- package/esm/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/esm/shared/components/ui/SetColorDialogBulkEditPanel.js +0 -81
- package/esm/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
- package/esm/shared/components/ui/SetColorDialogHelpfulTips.js +0 -4
- package/esm/shared/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
- package/esm/shared/components/ui/SetColorDialogRowPalettizer.js +0 -38
- package/esm/shared/findSecondLargestNumber.d.ts +0 -0
- package/esm/shared/findSecondLargestNumber.js +0 -1
- package/esm/shared/util.d.ts +0 -2
- package/esm/shared/util.js +0 -17
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}]>;
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}]) | undefined;
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}]) | undefined;
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|
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|
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reload(): Promise<void>;
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|
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} & {
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|
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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|
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|
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renderProps(): any;
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} & {
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|
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|
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afterAttach(): void;
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|
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} & {
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|
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readonly rendererConfig: {
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[x: string]: any;
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|
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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|
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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[x: string]: any;
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|
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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|
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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[x: string]: any;
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|
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
251
|
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} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
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|
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} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
|
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|
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readonly rendererTypeName: any;
|
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|
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} & {
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|
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renderProps(): any;
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|
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} & {
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|
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sourcesLoadingStopToken: string | undefined;
|
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|
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simplifiedFeaturesStopToken: string | undefined;
|
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|
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featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
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|
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sourcesVolatile: import("../shared/types").Source[] | undefined;
|
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|
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|
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|
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sampleInfo: undefined | Record<string, import("../shared/types").SampleInfo>;
|
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|
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hoveredGenotype: {
|
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|
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genotype: string;
|
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|
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name: string;
|
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267
|
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} | undefined;
|
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|
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} & {
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|
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setJexlFilters(f?: string[]): void;
|
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|
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|
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|
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|
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|
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name: string;
|
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|
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}): void;
|
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|
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setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
|
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|
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setLayout(layout: import("../shared/types").Source[]): void;
|
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|
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clearLayout(): void;
|
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|
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setSourcesLoading(str: string): void;
|
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|
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setSimplifiedFeaturesLoading(str: string): void;
|
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|
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setSources(sources: import("../shared/types").Source[]): void;
|
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281
|
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setMafFilter(arg: number): void;
|
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282
|
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setShowSidebarLabels(arg: boolean): void;
|
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|
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setPhasedMode(arg: string): void;
|
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|
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|
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|
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setHasPhased(arg: boolean): void;
|
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286
|
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setSampleInfo(arg: Record<string, import("../shared/types").SampleInfo>): void;
|
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|
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setReferenceDrawingMode(arg: string): void;
|
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288
|
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} & {
|
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289
|
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readonly activeFilters: any;
|
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290
|
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readonly preSources: import("../shared/types").Source[] | undefined;
|
|
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|
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readonly sourcesWithoutLayout: {
|
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292
|
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label: string;
|
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293
|
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id: string;
|
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|
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baseUri?: string;
|
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|
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name: string;
|
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|
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color?: string;
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|
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group?: string;
|
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|
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HP?: number;
|
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|
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}[] | undefined;
|
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|
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readonly sources: {
|
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|
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label: string;
|
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302
|
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id: string;
|
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303
|
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baseUri?: string;
|
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|
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name: string;
|
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|
-
color?: string;
|
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|
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group?: string;
|
|
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|
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HP?: number;
|
|
308
|
-
}[] | undefined;
|
|
309
|
-
} & {
|
|
310
|
-
readonly sourceMap: {
|
|
311
|
-
[k: string]: {
|
|
312
|
-
label: string;
|
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313
|
-
id: string;
|
|
314
|
-
baseUri?: string;
|
|
315
|
-
name: string;
|
|
316
|
-
color?: string;
|
|
317
|
-
group?: string;
|
|
318
|
-
HP?: number;
|
|
319
|
-
};
|
|
320
|
-
} | undefined;
|
|
321
|
-
readonly rowHeight: number;
|
|
322
|
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adapterProps(): any;
|
|
323
|
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trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
324
|
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label: string;
|
|
325
|
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icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
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|
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muiName: string;
|
|
327
|
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};
|
|
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|
-
type: string;
|
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329
|
-
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|
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330
|
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onClick: () => void;
|
|
331
|
-
subMenu?: undefined;
|
|
332
|
-
} | {
|
|
333
|
-
label: string;
|
|
334
|
-
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
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|
-
muiName: string;
|
|
336
|
-
};
|
|
337
|
-
subMenu: ({
|
|
338
|
-
label: string;
|
|
339
|
-
disabled: boolean;
|
|
340
|
-
onClick: () => void;
|
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|
-
type?: undefined;
|
|
342
|
-
checked?: undefined;
|
|
343
|
-
} | {
|
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|
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label: string;
|
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345
|
-
type: string;
|
|
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|
-
checked: boolean;
|
|
347
|
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onClick: () => void;
|
|
348
|
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disabled?: undefined;
|
|
349
|
-
})[];
|
|
350
|
-
type?: undefined;
|
|
351
|
-
checked?: undefined;
|
|
352
|
-
onClick?: undefined;
|
|
353
|
-
} | {
|
|
354
|
-
label: string;
|
|
355
|
-
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
356
|
-
muiName: string;
|
|
357
|
-
};
|
|
358
|
-
subMenu: ({
|
|
359
|
-
label: string;
|
|
360
|
-
type: string;
|
|
361
|
-
checked: boolean;
|
|
362
|
-
onClick: () => void;
|
|
363
|
-
disabled?: undefined;
|
|
364
|
-
} | {
|
|
365
|
-
label: string;
|
|
366
|
-
disabled: boolean;
|
|
367
|
-
checked: boolean;
|
|
368
|
-
type: string;
|
|
369
|
-
onClick: () => void;
|
|
370
|
-
})[];
|
|
371
|
-
type?: undefined;
|
|
372
|
-
checked?: undefined;
|
|
373
|
-
onClick?: undefined;
|
|
374
|
-
} | {
|
|
375
|
-
label: string;
|
|
376
|
-
type: string;
|
|
377
|
-
subMenu: {
|
|
378
|
-
label: string;
|
|
379
|
-
type: string;
|
|
380
|
-
checked: boolean;
|
|
381
|
-
onClick: () => void;
|
|
382
|
-
}[];
|
|
383
|
-
icon?: undefined;
|
|
384
|
-
checked?: undefined;
|
|
385
|
-
onClick?: undefined;
|
|
386
|
-
} | {
|
|
387
|
-
label: string;
|
|
388
|
-
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
389
|
-
muiName: string;
|
|
390
|
-
};
|
|
391
|
-
subMenu: {
|
|
392
|
-
label: string;
|
|
393
|
-
onClick: () => void;
|
|
394
|
-
}[];
|
|
395
|
-
type?: undefined;
|
|
396
|
-
checked?: undefined;
|
|
397
|
-
onClick?: undefined;
|
|
398
|
-
} | {
|
|
399
|
-
label: string;
|
|
400
|
-
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
401
|
-
muiName: string;
|
|
402
|
-
};
|
|
403
|
-
onClick: () => void;
|
|
404
|
-
type?: undefined;
|
|
405
|
-
checked?: undefined;
|
|
406
|
-
subMenu?: undefined;
|
|
407
|
-
})[];
|
|
408
|
-
} & {
|
|
409
|
-
readonly canDisplayLabels: boolean;
|
|
410
|
-
readonly totalHeight: number;
|
|
411
|
-
readonly featuresReady: boolean;
|
|
412
|
-
} & {
|
|
413
|
-
renderProps(): any;
|
|
414
|
-
} & {
|
|
415
|
-
readonly nrow: number;
|
|
416
|
-
readonly blockType: string;
|
|
417
|
-
readonly totalHeight: number;
|
|
418
|
-
readonly rowHeight: number;
|
|
419
|
-
readonly featuresReady: boolean;
|
|
420
|
-
} & {
|
|
421
|
-
renderProps(): any;
|
|
422
|
-
readonly canDisplayLabels: boolean;
|
|
423
|
-
} & {
|
|
424
|
-
setLineZoneHeight(n: number): number;
|
|
425
|
-
} & {
|
|
426
|
-
setLineZoneHeight(n: number): number;
|
|
427
|
-
afterAttach(): void;
|
|
428
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renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
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.actions(self => ({
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setLineZoneHeight(n) {
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.actions(self => {
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setLineZoneHeight(n) {
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afterAttach() {
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try {
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const { getMultiVariantSourcesAutorun } = await Promise.resolve().then(() => __importStar(require('../getMultiVariantSourcesAutorun')));
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const { getMultiVariantFeaturesAutorun } = await Promise.resolve().then(() => __importStar(require('../getMultiVariantFeaturesAutorun')));
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getMultiVariantSourcesAutorun(self);
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getMultiVariantFeaturesAutorun(self);
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}
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})();
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},
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async renderSvg(opts) {
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const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
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return renderSvg(self, opts, superRenderSvg);
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},
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};
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});
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}
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|
@@ -1,3 +0,0 @@
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import type { MultiLinearVariantMatrixDisplayModel } from './model';
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|
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import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
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|
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export declare function renderSvg(model: MultiLinearVariantMatrixDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
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@@ -1,17 +0,0 @@
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.renderSvg = renderSvg;
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const jsx_runtime_1 = require("react/jsx-runtime");
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|
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const util_1 = require("@jbrowse/core/util");
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const mobx_1 = require("mobx");
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const LinesConnectingMatrixToGenomicPosition_1 = __importDefault(require("./components/LinesConnectingMatrixToGenomicPosition"));
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const MultiVariantLegendBar_1 = __importDefault(require("../shared/components/MultiVariantLegendBar"));
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async function renderSvg(model, opts, superRenderSvg) {
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await (0, mobx_1.when)(() => !!model.regionCannotBeRenderedText);
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const { offsetPx } = (0, util_1.getContainingView)(model);
|
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|
-
const { lineZoneHeight } = model;
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return ((0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsxs)("g", { transform: `translate(${Math.max(-offsetPx, 0)})`, children: [(0, jsx_runtime_1.jsx)(LinesConnectingMatrixToGenomicPosition_1.default, { exportSVG: true, model: model }), (0, jsx_runtime_1.jsxs)("g", { transform: `translate(0,${lineZoneHeight})`, children: [(0, jsx_runtime_1.jsx)("g", { children: await superRenderSvg(opts) }), (0, jsx_runtime_1.jsx)(MultiVariantLegendBar_1.default, { model: model, orientation: "left", exportSVG: true })] })] }) }));
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|
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|
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}
|
|
@@ -1,37 +0,0 @@
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|
-
import BoxRendererType from '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType';
|
|
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|
-
import { SimpleFeature } from '@jbrowse/core/util';
|
|
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|
-
import type { RenderArgsDeserialized } from './types';
|
|
4
|
-
export default class LinearVariantMatrixRenderer extends BoxRendererType {
|
|
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|
-
supportsSVG: boolean;
|
|
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|
-
render(renderProps: RenderArgsDeserialized): Promise<{
|
|
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|
-
features: Map<any, any>;
|
|
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|
-
simplifiedFeatures: SimpleFeature[];
|
|
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|
-
height: number;
|
|
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|
-
width: number;
|
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|
-
arr: string[][];
|
|
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|
-
canvasRecordedData: Record<string, unknown>;
|
|
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|
-
layout: import("@jbrowse/core/util/layouts/BaseLayout").BaseLayout<import("@jbrowse/core/util").Feature>;
|
|
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|
-
reactElement?: React.ReactElement;
|
|
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|
-
html?: string;
|
|
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|
-
} | {
|
|
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|
-
features: Map<any, any>;
|
|
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|
-
simplifiedFeatures: SimpleFeature[];
|
|
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|
-
height: number;
|
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|
-
width: number;
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|
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arr: string[][];
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|
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imageData: any;
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|
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|
-
layout: import("@jbrowse/core/util/layouts/BaseLayout").BaseLayout<import("@jbrowse/core/util").Feature>;
|
|
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|
-
reactElement?: React.ReactElement;
|
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|
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html?: string;
|
|
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|
-
} | {
|
|
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|
-
features: Map<any, any>;
|
|
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|
-
simplifiedFeatures: SimpleFeature[];
|
|
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|
-
height: number;
|
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|
-
width: number;
|
|
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|
-
arr: string[][];
|
|
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|
-
reactElement: React.ReactElement;
|
|
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|
-
layout: import("@jbrowse/core/util/layouts/BaseLayout").BaseLayout<import("@jbrowse/core/util").Feature>;
|
|
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|
-
html?: string;
|
|
35
|
-
}>;
|
|
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|
-
}
|
|
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|
-
export type { RenderArgs, RenderArgsSerialized, RenderResults, ResultsDeserialized, ResultsSerialized, } from '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType';
|