@jbrowse/plugin-variants 3.7.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (539) hide show
  1. package/esm/ChordVariantDisplay/components/ChordVariantDisplay.d.ts +11 -0
  2. package/esm/ChordVariantDisplay/components/ChordVariantDisplay.js +16 -0
  3. package/esm/ChordVariantDisplay/components/DisplayError.d.ts +9 -0
  4. package/esm/ChordVariantDisplay/components/DisplayError.js +7 -0
  5. package/esm/ChordVariantDisplay/components/Loading.d.ts +8 -0
  6. package/esm/ChordVariantDisplay/components/Loading.js +28 -0
  7. package/esm/ChordVariantDisplay/index.js +4 -4
  8. package/esm/ChordVariantDisplay/models/configSchema.d.ts +4 -5
  9. package/esm/ChordVariantDisplay/models/configSchema.js +10 -5
  10. package/esm/ChordVariantDisplay/models/renderReaction.d.ts +30 -0
  11. package/esm/ChordVariantDisplay/models/renderReaction.js +48 -0
  12. package/esm/ChordVariantDisplay/models/renderSvg.d.ts +6 -0
  13. package/esm/ChordVariantDisplay/models/renderSvg.js +12 -0
  14. package/esm/ChordVariantDisplay/models/stateModelFactory.d.ts +535 -46
  15. package/esm/ChordVariantDisplay/models/stateModelFactory.js +146 -8
  16. package/esm/LinearVariantDisplay/configSchema.d.ts +5 -5
  17. package/esm/LinearVariantDisplay/configSchema.js +2 -2
  18. package/esm/LinearVariantDisplay/index.js +6 -4
  19. package/esm/LinearVariantDisplay/model.d.ts +1086 -103
  20. package/esm/LinearVariantDisplay/model.js +10 -26
  21. package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +1 -1
  22. package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +8 -18
  23. package/esm/MultiLinearVariantDisplay/configSchema.d.ts +6 -44
  24. package/esm/MultiLinearVariantDisplay/configSchema.js +2 -2
  25. package/esm/MultiLinearVariantDisplay/index.js +4 -3
  26. package/esm/MultiLinearVariantDisplay/model.d.ts +1031 -125
  27. package/esm/MultiLinearVariantDisplay/model.js +3 -23
  28. package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +1 -1
  29. package/esm/MultiLinearVariantDisplay/renderSvg.js +4 -4
  30. package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +8 -2
  31. package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +26 -23
  32. package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +1 -1
  33. package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +9 -20
  34. package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +6 -6
  35. package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +1 -1
  36. package/esm/MultiLinearVariantMatrixDisplay/index.js +5 -4
  37. package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +1110 -131
  38. package/esm/MultiLinearVariantMatrixDisplay/model.js +22 -48
  39. package/esm/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +1 -1
  40. package/esm/MultiLinearVariantMatrixDisplay/renderSvg.js +3 -3
  41. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +4 -35
  42. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +19 -33
  43. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +12 -1
  44. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +48 -22
  45. package/esm/MultiLinearVariantMatrixRenderer/configSchema.d.ts +1 -1
  46. package/esm/MultiLinearVariantMatrixRenderer/index.js +4 -4
  47. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +10 -2
  48. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +155 -135
  49. package/esm/MultiLinearVariantMatrixRenderer/types.d.ts +2 -14
  50. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +3 -60
  51. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +9 -18
  52. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +7 -6
  53. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +30 -26
  54. package/esm/MultiLinearVariantRenderer/configSchema.d.ts +1 -1
  55. package/esm/MultiLinearVariantRenderer/index.js +4 -4
  56. package/esm/MultiLinearVariantRenderer/makeImageData.d.ts +14 -11
  57. package/esm/MultiLinearVariantRenderer/makeImageData.js +127 -110
  58. package/esm/MultiLinearVariantRenderer/types.d.ts +3 -20
  59. package/esm/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +1 -1
  60. package/esm/SplitVcfTabixAdapter/configSchema.d.ts +2 -2
  61. package/esm/SplitVcfTabixAdapter/index.d.ts +1 -1
  62. package/esm/SplitVcfTabixAdapter/index.js +3 -3
  63. package/esm/StructuralVariantChordRenderer/Chord.d.ts +1 -1
  64. package/esm/StructuralVariantChordRenderer/Chord.js +41 -58
  65. package/esm/StructuralVariantChordRenderer/ReactComponent.d.ts +3 -3
  66. package/esm/StructuralVariantChordRenderer/ReactComponent.js +3 -3
  67. package/esm/StructuralVariantChordRenderer/configSchema.d.ts +2 -2
  68. package/esm/StructuralVariantChordRenderer/index.js +3 -3
  69. package/esm/Tooltip.js +2 -2
  70. package/esm/VariantFeatureWidget/AltFormatter.js +1 -1
  71. package/esm/VariantFeatureWidget/Formatter.js +2 -2
  72. package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.d.ts +1 -0
  73. package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.js +1 -0
  74. package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +1 -1
  75. package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +8 -23
  76. package/esm/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +1 -1
  77. package/esm/VariantFeatureWidget/VariantFeatureWidget.d.ts +1 -1
  78. package/esm/VariantFeatureWidget/VariantFeatureWidget.js +16 -29
  79. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +5 -2
  80. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +68 -59
  81. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +13 -2
  82. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +1 -1
  83. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +72 -30
  84. package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +2 -2
  85. package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +49 -26
  86. package/esm/VariantFeatureWidget/VariantSampleGrid/types.d.ts +3 -5
  87. package/esm/VariantFeatureWidget/configSchema.d.ts +1 -1
  88. package/esm/VariantFeatureWidget/index.js +3 -3
  89. package/esm/VariantFeatureWidget/stateModelFactory.d.ts +39 -39
  90. package/esm/VariantFeatureWidget/stateModelFactory.js +1 -1
  91. package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +2 -7
  92. package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.js +3 -14
  93. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +4 -2
  94. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +2 -5
  95. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +2 -2
  96. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +34 -19
  97. package/esm/VariantRPC/MultiVariantGetSources.js +2 -6
  98. package/esm/VariantRPC/executeClusterGenotypeMatrix.d.ts +22 -0
  99. package/esm/VariantRPC/executeClusterGenotypeMatrix.js +19 -0
  100. package/esm/VariantRPC/getGenotypeMatrix.d.ts +18 -3
  101. package/esm/VariantRPC/getGenotypeMatrix.js +23 -40
  102. package/esm/VariantRPC/types.d.ts +10 -24
  103. package/esm/VariantTrack/configSchema.d.ts +16 -11
  104. package/esm/VariantTrack/index.js +13 -2
  105. package/esm/VariantTrack/saveTrackFormats/vcf.d.ts +4 -0
  106. package/esm/VariantTrack/saveTrackFormats/vcf.js +15 -0
  107. package/esm/VcfAdapter/VcfAdapter.d.ts +6 -3
  108. package/esm/VcfAdapter/VcfAdapter.js +36 -24
  109. package/esm/VcfAdapter/configSchema.d.ts +2 -2
  110. package/esm/VcfAdapter/index.js +3 -2
  111. package/esm/VcfExtensionPoints/index.d.ts +2 -0
  112. package/esm/{extensionPoints.js → VcfExtensionPoints/index.js} +1 -1
  113. package/esm/VcfFeature/index.js +20 -8
  114. package/esm/VcfFeature/util.d.ts +0 -1
  115. package/esm/VcfFeature/util.js +70 -188
  116. package/esm/VcfTabixAdapter/VcfTabixAdapter.d.ts +2 -0
  117. package/esm/VcfTabixAdapter/VcfTabixAdapter.js +28 -3
  118. package/esm/VcfTabixAdapter/configSchema.d.ts +5 -5
  119. package/esm/VcfTabixAdapter/configSchema.js +1 -1
  120. package/esm/VcfTabixAdapter/index.d.ts +1 -1
  121. package/esm/VcfTabixAdapter/index.js +4 -3
  122. package/esm/d3-hierarchy2/accessors.d.ts +2 -0
  123. package/esm/d3-hierarchy2/accessors.js +8 -0
  124. package/esm/d3-hierarchy2/array.d.ts +2 -0
  125. package/esm/d3-hierarchy2/array.js +15 -0
  126. package/esm/d3-hierarchy2/cluster.d.ts +8 -0
  127. package/esm/d3-hierarchy2/cluster.js +63 -0
  128. package/esm/d3-hierarchy2/constant.d.ts +2 -0
  129. package/esm/d3-hierarchy2/constant.js +8 -0
  130. package/esm/d3-hierarchy2/hierarchy/ancestors.d.ts +1 -0
  131. package/esm/d3-hierarchy2/hierarchy/ancestors.js +7 -0
  132. package/esm/d3-hierarchy2/hierarchy/count.d.ts +1 -0
  133. package/esm/d3-hierarchy2/hierarchy/count.js +12 -0
  134. package/esm/d3-hierarchy2/hierarchy/descendants.d.ts +1 -0
  135. package/esm/d3-hierarchy2/hierarchy/descendants.js +3 -0
  136. package/esm/d3-hierarchy2/hierarchy/each.d.ts +1 -0
  137. package/esm/d3-hierarchy2/hierarchy/each.js +7 -0
  138. package/esm/d3-hierarchy2/hierarchy/eachAfter.d.ts +1 -0
  139. package/esm/d3-hierarchy2/hierarchy/eachAfter.js +15 -0
  140. package/esm/d3-hierarchy2/hierarchy/eachBefore.d.ts +1 -0
  141. package/esm/d3-hierarchy2/hierarchy/eachBefore.js +12 -0
  142. package/esm/d3-hierarchy2/hierarchy/find.d.ts +1 -0
  143. package/esm/d3-hierarchy2/hierarchy/find.js +8 -0
  144. package/esm/d3-hierarchy2/hierarchy/index.d.ts +3 -0
  145. package/esm/d3-hierarchy2/hierarchy/index.js +78 -0
  146. package/esm/d3-hierarchy2/hierarchy/iterator.d.ts +1 -0
  147. package/esm/d3-hierarchy2/hierarchy/iterator.js +14 -0
  148. package/esm/d3-hierarchy2/hierarchy/leaves.d.ts +1 -0
  149. package/esm/d3-hierarchy2/hierarchy/leaves.js +9 -0
  150. package/esm/d3-hierarchy2/hierarchy/links.d.ts +1 -0
  151. package/esm/d3-hierarchy2/hierarchy/links.js +9 -0
  152. package/esm/d3-hierarchy2/hierarchy/path.d.ts +1 -0
  153. package/esm/d3-hierarchy2/hierarchy/path.js +26 -0
  154. package/esm/d3-hierarchy2/hierarchy/sort.d.ts +1 -0
  155. package/esm/d3-hierarchy2/hierarchy/sort.js +7 -0
  156. package/esm/d3-hierarchy2/hierarchy/sum.d.ts +1 -0
  157. package/esm/d3-hierarchy2/hierarchy/sum.js +8 -0
  158. package/esm/d3-hierarchy2/index.d.ts +15 -0
  159. package/esm/d3-hierarchy2/index.js +15 -0
  160. package/esm/d3-hierarchy2/lcg.d.ts +1 -0
  161. package/esm/d3-hierarchy2/lcg.js +7 -0
  162. package/esm/d3-hierarchy2/pack/enclose.d.ts +10 -0
  163. package/esm/d3-hierarchy2/pack/enclose.js +84 -0
  164. package/esm/d3-hierarchy2/pack/index.d.ts +7 -0
  165. package/esm/d3-hierarchy2/pack/index.js +68 -0
  166. package/esm/d3-hierarchy2/pack/siblings.d.ts +2 -0
  167. package/esm/d3-hierarchy2/pack/siblings.js +94 -0
  168. package/esm/d3-hierarchy2/partition.d.ts +6 -0
  169. package/esm/d3-hierarchy2/partition.js +42 -0
  170. package/esm/d3-hierarchy2/stratify.d.ts +9 -0
  171. package/esm/d3-hierarchy2/stratify.js +115 -0
  172. package/esm/d3-hierarchy2/tree.d.ts +8 -0
  173. package/esm/d3-hierarchy2/tree.js +153 -0
  174. package/esm/d3-hierarchy2/treemap/binary.d.ts +1 -0
  175. package/esm/d3-hierarchy2/treemap/binary.js +36 -0
  176. package/esm/d3-hierarchy2/treemap/dice.d.ts +1 -0
  177. package/esm/d3-hierarchy2/treemap/dice.js +7 -0
  178. package/esm/d3-hierarchy2/treemap/index.d.ts +17 -0
  179. package/esm/d3-hierarchy2/treemap/index.js +72 -0
  180. package/esm/d3-hierarchy2/treemap/resquarify.d.ts +5 -0
  181. package/esm/d3-hierarchy2/treemap/resquarify.js +28 -0
  182. package/esm/d3-hierarchy2/treemap/round.d.ts +1 -0
  183. package/esm/d3-hierarchy2/treemap/round.js +6 -0
  184. package/esm/d3-hierarchy2/treemap/slice.d.ts +1 -0
  185. package/esm/d3-hierarchy2/treemap/slice.js +7 -0
  186. package/esm/d3-hierarchy2/treemap/sliceDice.d.ts +1 -0
  187. package/esm/d3-hierarchy2/treemap/sliceDice.js +5 -0
  188. package/esm/d3-hierarchy2/treemap/squarify.d.ts +11 -0
  189. package/esm/d3-hierarchy2/treemap/squarify.js +46 -0
  190. package/esm/index.d.ts +1 -1
  191. package/esm/index.js +19 -22
  192. package/esm/shared/MultiVariantBaseModel.d.ts +1103 -117
  193. package/esm/shared/MultiVariantBaseModel.js +231 -65
  194. package/esm/shared/SharedVariantConfigSchema.d.ts +2 -40
  195. package/esm/shared/SharedVariantConfigSchema.js +1 -46
  196. package/esm/shared/components/AddFiltersDialog.d.ts +2 -3
  197. package/esm/shared/components/AddFiltersDialog.js +20 -28
  198. package/esm/shared/components/{ui/SetColorDialog.d.ts → BaseSetColorDialog.d.ts} +2 -1
  199. package/esm/shared/components/BaseSetColorDialog.js +61 -0
  200. package/esm/shared/components/ClearTreeWarningDialog.d.ts +4 -0
  201. package/esm/shared/components/ClearTreeWarningDialog.js +9 -0
  202. package/esm/shared/components/MAFFilterDialog.d.ts +2 -3
  203. package/esm/shared/components/MAFFilterDialog.js +4 -8
  204. package/esm/shared/components/MultiVariantBaseDisplayComponent.d.ts +1 -1
  205. package/esm/shared/components/MultiVariantBaseDisplayComponent.js +8 -17
  206. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +1 -1
  207. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.js +3 -3
  208. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +1 -1
  209. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +9 -14
  210. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +1 -1
  211. package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +11 -15
  212. package/esm/shared/components/MultiVariantClusterDialog/types.d.ts +3 -2
  213. package/esm/shared/components/MultiVariantColorLegend.d.ts +1 -1
  214. package/esm/shared/components/MultiVariantColorLegend.js +22 -12
  215. package/esm/shared/components/MultiVariantCrosshairs.d.ts +4 -2
  216. package/esm/shared/components/MultiVariantCrosshairs.js +31 -23
  217. package/esm/shared/components/MultiVariantLegendBar.d.ts +4 -4
  218. package/esm/shared/components/MultiVariantLegendBar.js +24 -22
  219. package/esm/shared/components/MultiVariantLegendBarWrapper.d.ts +7 -0
  220. package/esm/shared/components/MultiVariantLegendBarWrapper.js +18 -0
  221. package/esm/shared/components/MultiVariantTooltip.d.ts +5 -6
  222. package/esm/shared/components/MultiVariantTooltip.js +35 -17
  223. package/esm/shared/components/ScrollableVariantContainer.d.ts +8 -0
  224. package/esm/shared/components/ScrollableVariantContainer.js +23 -0
  225. package/esm/shared/components/SetColorDialog.d.ts +3 -2
  226. package/esm/shared/components/SetColorDialog.js +2 -2
  227. package/esm/shared/components/SetColorDialogBulkEditPanel.d.ts +7 -8
  228. package/esm/shared/components/SetColorDialogBulkEditPanel.js +24 -54
  229. package/esm/shared/components/SetColorDialogRowPalettizer.js +13 -23
  230. package/esm/shared/components/SetRowHeightDialog.d.ts +2 -3
  231. package/esm/shared/components/SourcesDataGrid.d.ts +1 -1
  232. package/esm/shared/components/SourcesDataGrid.js +1 -1
  233. package/esm/shared/components/SourcesGrid.d.ts +1 -1
  234. package/esm/shared/components/SourcesGrid.js +2 -2
  235. package/esm/shared/components/SourcesGridHeader.d.ts +1 -1
  236. package/esm/shared/components/SourcesGridHeader.js +1 -1
  237. package/esm/shared/components/SvgTree.d.ts +5 -0
  238. package/esm/shared/components/SvgTree.js +19 -0
  239. package/esm/shared/components/TreeSidebar.d.ts +5 -0
  240. package/esm/shared/components/TreeSidebar.js +121 -0
  241. package/esm/shared/components/types.d.ts +43 -0
  242. package/esm/shared/components/types.js +1 -0
  243. package/esm/shared/constants.d.ts +8 -2
  244. package/esm/shared/constants.js +11 -2
  245. package/esm/shared/drawAlleleCount.d.ts +2 -1
  246. package/esm/shared/drawAlleleCount.js +50 -16
  247. package/esm/shared/drawPhased.js +11 -12
  248. package/{dist → esm/shared}/getMultiVariantFeaturesAutorun.d.ts +5 -4
  249. package/esm/{getMultiVariantFeaturesAutorun.js → shared/getMultiVariantFeaturesAutorun.js} +9 -2
  250. package/esm/{getMultiVariantSourcesAutorun.d.ts → shared/getMultiVariantSourcesAutorun.d.ts} +4 -3
  251. package/esm/{getMultiVariantSourcesAutorun.js → shared/getMultiVariantSourcesAutorun.js} +10 -2
  252. package/esm/shared/getSources.d.ts +1 -1
  253. package/esm/shared/getSources.js +2 -2
  254. package/esm/shared/hooks/useMouseTracking.d.ts +6 -0
  255. package/esm/shared/hooks/useMouseTracking.js +34 -0
  256. package/esm/shared/makeSidebarSvg.d.ts +9 -0
  257. package/esm/shared/makeSidebarSvg.js +9 -0
  258. package/esm/shared/minorAlleleFrequencyUtils.d.ts +6 -5
  259. package/esm/shared/minorAlleleFrequencyUtils.js +37 -38
  260. package/esm/shared/setupMultiVariantAutoruns.d.ts +2 -0
  261. package/esm/shared/setupMultiVariantAutoruns.js +8 -0
  262. package/esm/shared/treeDrawingAutorun.d.ts +16 -0
  263. package/esm/shared/treeDrawingAutorun.js +71 -0
  264. package/esm/shared/types.d.ts +15 -0
  265. package/package.json +38 -39
  266. package/dist/ChordVariantDisplay/index.d.ts +0 -2
  267. package/dist/ChordVariantDisplay/index.js +0 -25
  268. package/dist/ChordVariantDisplay/models/configSchema.d.ts +0 -12
  269. package/dist/ChordVariantDisplay/models/configSchema.js +0 -15
  270. package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts +0 -115
  271. package/dist/ChordVariantDisplay/models/stateModelFactory.js +0 -35
  272. package/dist/LinearVariantDisplay/configSchema.d.ts +0 -34
  273. package/dist/LinearVariantDisplay/configSchema.js +0 -12
  274. package/dist/LinearVariantDisplay/index.d.ts +0 -2
  275. package/dist/LinearVariantDisplay/index.js +0 -24
  276. package/dist/LinearVariantDisplay/model.d.ts +0 -278
  277. package/dist/LinearVariantDisplay/model.js +0 -37
  278. package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +0 -5
  279. package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +0 -29
  280. package/dist/MultiLinearVariantDisplay/configSchema.d.ts +0 -80
  281. package/dist/MultiLinearVariantDisplay/configSchema.js +0 -30
  282. package/dist/MultiLinearVariantDisplay/index.d.ts +0 -2
  283. package/dist/MultiLinearVariantDisplay/index.js +0 -57
  284. package/dist/MultiLinearVariantDisplay/model.d.ts +0 -422
  285. package/dist/MultiLinearVariantDisplay/model.js +0 -82
  286. package/dist/MultiLinearVariantDisplay/renderSvg.d.ts +0 -3
  287. package/dist/MultiLinearVariantDisplay/renderSvg.js +0 -15
  288. package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +0 -6
  289. package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +0 -83
  290. package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +0 -5
  291. package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +0 -31
  292. package/dist/MultiLinearVariantMatrixDisplay/configSchema.d.ts +0 -37
  293. package/dist/MultiLinearVariantMatrixDisplay/configSchema.js +0 -22
  294. package/dist/MultiLinearVariantMatrixDisplay/index.d.ts +0 -2
  295. package/dist/MultiLinearVariantMatrixDisplay/index.js +0 -24
  296. package/dist/MultiLinearVariantMatrixDisplay/model.d.ts +0 -431
  297. package/dist/MultiLinearVariantMatrixDisplay/model.js +0 -125
  298. package/dist/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +0 -3
  299. package/dist/MultiLinearVariantMatrixDisplay/renderSvg.js +0 -17
  300. package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +0 -37
  301. package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +0 -87
  302. package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +0 -8
  303. package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +0 -41
  304. package/dist/MultiLinearVariantMatrixRenderer/configSchema.d.ts +0 -2
  305. package/dist/MultiLinearVariantMatrixRenderer/configSchema.js +0 -6
  306. package/dist/MultiLinearVariantMatrixRenderer/index.d.ts +0 -2
  307. package/dist/MultiLinearVariantMatrixRenderer/index.js +0 -20
  308. package/dist/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +0 -14
  309. package/dist/MultiLinearVariantMatrixRenderer/makeImageData.js +0 -154
  310. package/dist/MultiLinearVariantMatrixRenderer/types.d.ts +0 -14
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  318. package/dist/MultiLinearVariantRenderer/configSchema.d.ts +0 -2
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  324. package/dist/MultiLinearVariantRenderer/types.d.ts +0 -21
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  332. package/dist/SplitVcfTabixAdapter/index.d.ts +0 -3
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  334. package/dist/StructuralVariantChordRenderer/Chord.d.ts +0 -13
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  336. package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +0 -16
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  339. package/dist/StructuralVariantChordRenderer/configSchema.js +0 -25
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  344. package/dist/Tooltip.d.ts +0 -19
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  346. package/dist/VariantFeatureWidget/AltFormatter.d.ts +0 -4
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  348. package/dist/VariantFeatureWidget/Checkbox2.d.ts +0 -6
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  350. package/dist/VariantFeatureWidget/Formatter.d.ts +0 -3
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  352. package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
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  354. package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
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  358. package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
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  366. package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts +0 -5
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  368. package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +0 -4
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  374. package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +0 -5
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  376. package/dist/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
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  380. package/dist/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
  381. package/dist/VariantFeatureWidget/VariantSampleGrid/util.js +0 -14
  382. package/dist/VariantFeatureWidget/configSchema.d.ts +0 -1
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  388. package/dist/VariantFeatureWidget/types.d.ts +0 -16
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  390. package/dist/VariantFeatureWidget/variantFieldDescriptions.d.ts +0 -9
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  392. package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +0 -14
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  394. package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +0 -6
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  396. package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +0 -19
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  398. package/dist/VariantRPC/MultiVariantGetSources.d.ts +0 -14
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  400. package/dist/VariantRPC/getGenotypeMatrix.d.ts +0 -6
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  402. package/dist/VariantRPC/types.d.ts +0 -36
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  404. package/dist/VariantTrack/configSchema.d.ts +0 -79
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  406. package/dist/VariantTrack/index.d.ts +0 -2
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  408. package/dist/VcfAdapter/VcfAdapter.d.ts +0 -35
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  410. package/dist/VcfAdapter/configSchema.d.ts +0 -18
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  414. package/dist/VcfAdapter/vcfParser.d.ts +0 -7
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  416. package/dist/VcfFeature/index.d.ts +0 -19
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  418. package/dist/VcfFeature/util.d.ts +0 -6
  419. package/dist/VcfFeature/util.js +0 -227
  420. package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +0 -25
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  422. package/dist/VcfTabixAdapter/configSchema.d.ts +0 -32
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  424. package/dist/VcfTabixAdapter/index.d.ts +0 -3
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  426. package/dist/extensionPoints.d.ts +0 -2
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  428. package/dist/getMultiVariantFeaturesAutorun.js +0 -48
  429. package/dist/getMultiVariantSourcesAutorun.d.ts +0 -11
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  431. package/dist/index.d.ts +0 -7
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  435. package/dist/shared/SharedVariantConfigSchema.d.ts +0 -66
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  437. package/dist/shared/SharedVariantMixin.d.ts +0 -325
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  439. package/dist/shared/components/AddFiltersDialog.d.ts +0 -9
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  441. package/dist/shared/components/MAFFilterDialog.d.ts +0 -8
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  443. package/dist/shared/components/MultiVariantBaseDisplayComponent.d.ts +0 -5
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  445. package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +0 -6
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  447. package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +0 -7
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  449. package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +0 -7
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  453. package/dist/shared/components/MultiVariantColorLegend.d.ts +0 -10
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  455. package/dist/shared/components/MultiVariantCrosshairs.d.ts +0 -7
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  457. package/dist/shared/components/MultiVariantLegendBar.d.ts +0 -7
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  459. package/dist/shared/components/MultiVariantTooltip.d.ts +0 -10
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  526. package/esm/getMultiVariantFeaturesAutorun.d.ts +0 -18
  527. package/esm/shared/SharedVariantMixin.d.ts +0 -325
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  529. package/esm/shared/components/ui/SetColorDialog.js +0 -45
  530. package/esm/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
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@@ -1,46 +1,39 @@
1
1
  import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
2
- import type { Feature } from '@jbrowse/core/util';
3
- declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- type: import("mobx-state-tree").ISimpleType<string>;
6
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
2
+ import type { AnyReactComponentType, Feature } from '@jbrowse/core/util';
3
+ import type { ExportSvgOptions } from '@jbrowse/plugin-circular-view';
4
+ import type { ThemeOptions } from '@mui/material';
5
+ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("@jbrowse/mobx-state-tree").IModelType<{
6
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
7
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
8
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
7
9
  } & {
8
- bezierRadiusRatio: import("mobx-state-tree").IType<number | undefined, number, number>;
9
- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
10
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
11
- onChordClick: {
12
- type: string;
13
- description: string;
14
- defaultValue: boolean;
15
- contextVariable: string[];
16
- };
17
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
18
- } & {
19
- type: import("mobx-state-tree").ISimpleType<"ChordVariantDisplay">;
10
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"ChordVariantDisplay">;
11
+ bezierRadiusRatio: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
12
+ assemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
20
13
  configuration: AnyConfigurationSchemaType;
21
14
  }, {
22
15
  rendererTypeName: string;
23
16
  error: unknown;
24
- message: string | undefined;
17
+ statusMessage: string | undefined;
25
18
  } & {
26
19
  readonly RenderingComponent: React.FC<{
27
20
  model: {
28
21
  id: string;
29
22
  type: string;
30
23
  rpcDriverName: string | undefined;
31
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
24
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
32
25
  rendererTypeName: string;
33
26
  error: unknown;
34
- message: string | undefined;
35
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
36
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
37
- type: import("mobx-state-tree").ISimpleType<string>;
38
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
27
+ statusMessage: string | undefined;
28
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
29
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
30
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
31
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
39
32
  }, {
40
33
  rendererTypeName: string;
41
34
  error: unknown;
42
- message: string | undefined;
43
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
35
+ statusMessage: string | undefined;
36
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
44
37
  onHorizontalScroll?: () => void;
45
38
  blockState?: Record<string, any>;
46
39
  }>;
@@ -49,30 +42,142 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
49
42
  id: string;
50
43
  type: string;
51
44
  rpcDriverName: string | undefined;
52
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
45
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
53
46
  rendererTypeName: string;
54
47
  error: unknown;
55
- message: string | undefined;
56
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
57
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
58
- type: import("mobx-state-tree").ISimpleType<string>;
59
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
48
+ statusMessage: string | undefined;
49
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
50
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
51
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
52
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
60
53
  }, {
61
54
  rendererTypeName: string;
62
55
  error: unknown;
63
- message: string | undefined;
64
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
56
+ statusMessage: string | undefined;
57
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
65
58
  }> | null;
66
59
  readonly adapterConfig: any;
67
- readonly parentTrack: any;
60
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
61
+ readonly parentDisplay: any;
62
+ readonly effectiveRpcDriverName: any;
63
+ } & {
68
64
  renderProps(): any;
65
+ renderingProps(): {
66
+ displayModel: {
67
+ id: string;
68
+ type: string;
69
+ rpcDriverName: string | undefined;
70
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
71
+ rendererTypeName: string;
72
+ error: unknown;
73
+ statusMessage: string | undefined;
74
+ } & {
75
+ readonly RenderingComponent: React.FC<{
76
+ model: {
77
+ id: string;
78
+ type: string;
79
+ rpcDriverName: string | undefined;
80
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
81
+ rendererTypeName: string;
82
+ error: unknown;
83
+ statusMessage: string | undefined;
84
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
85
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
86
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
87
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
88
+ }, {
89
+ rendererTypeName: string;
90
+ error: unknown;
91
+ statusMessage: string | undefined;
92
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
93
+ onHorizontalScroll?: () => void;
94
+ blockState?: Record<string, any>;
95
+ }>;
96
+ readonly DisplayBlurb: React.FC<{
97
+ model: {
98
+ id: string;
99
+ type: string;
100
+ rpcDriverName: string | undefined;
101
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
102
+ rendererTypeName: string;
103
+ error: unknown;
104
+ statusMessage: string | undefined;
105
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
106
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
107
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
108
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
109
+ }, {
110
+ rendererTypeName: string;
111
+ error: unknown;
112
+ statusMessage: string | undefined;
113
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
114
+ }> | null;
115
+ readonly adapterConfig: any;
116
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
117
+ readonly parentDisplay: any;
118
+ readonly effectiveRpcDriverName: any;
119
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
120
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
121
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
122
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
123
+ }, {
124
+ rendererTypeName: string;
125
+ error: unknown;
126
+ statusMessage: string | undefined;
127
+ } & {
128
+ readonly RenderingComponent: React.FC<{
129
+ model: {
130
+ id: string;
131
+ type: string;
132
+ rpcDriverName: string | undefined;
133
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
134
+ rendererTypeName: string;
135
+ error: unknown;
136
+ statusMessage: string | undefined;
137
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
138
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
139
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
140
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
141
+ }, {
142
+ rendererTypeName: string;
143
+ error: unknown;
144
+ statusMessage: string | undefined;
145
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
146
+ onHorizontalScroll?: () => void;
147
+ blockState?: Record<string, any>;
148
+ }>;
149
+ readonly DisplayBlurb: React.FC<{
150
+ model: {
151
+ id: string;
152
+ type: string;
153
+ rpcDriverName: string | undefined;
154
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
155
+ rendererTypeName: string;
156
+ error: unknown;
157
+ statusMessage: string | undefined;
158
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
159
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
160
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
161
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
162
+ }, {
163
+ rendererTypeName: string;
164
+ error: unknown;
165
+ statusMessage: string | undefined;
166
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
167
+ }> | null;
168
+ readonly adapterConfig: any;
169
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
170
+ readonly parentDisplay: any;
171
+ readonly effectiveRpcDriverName: any;
172
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
173
+ };
69
174
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
70
175
  readonly DisplayMessageComponent: undefined | React.FC<any>;
71
176
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
72
177
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
73
178
  regionCannotBeRendered(): null;
74
179
  } & {
75
- setMessage(arg?: string): void;
180
+ setStatusMessage(arg?: string): void;
76
181
  setError(error?: unknown): void;
77
182
  setRpcDriverName(rpcDriverName: string): void;
78
183
  reload(): void;
@@ -82,15 +187,402 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
82
187
  data: undefined;
83
188
  html: string | undefined;
84
189
  message: string;
85
- renderingComponent: undefined | import("@jbrowse/core/util").AnyReactComponentType;
190
+ renderingComponent: undefined | AnyReactComponentType;
86
191
  refNameMap: Record<string, string> | undefined;
87
192
  } & {
88
193
  onChordClick(feature: Feature): void;
89
194
  } & {
90
- readonly blockDefinitions: import("@jbrowse/plugin-circular-view/src/CircularView/slices").Slice[];
91
- renderProps(): any;
195
+ readonly blockDefinitions: import("@jbrowse/plugin-circular-view/src/CircularView/slices.ts").Slice[];
196
+ readonly rendererTypeName: any;
92
197
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType | undefined;
93
198
  readonly selectedFeatureId: string | undefined;
199
+ renderProps(): any;
200
+ renderingProps(): {
201
+ displayModel: {
202
+ id: string;
203
+ type: "ChordVariantDisplay";
204
+ rpcDriverName: string | undefined;
205
+ bezierRadiusRatio: number;
206
+ assemblyName: string | undefined;
207
+ configuration: {
208
+ [x: string]: any;
209
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
210
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
211
+ [x: string]: any;
212
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
213
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
214
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
215
+ rendererTypeName: string;
216
+ error: unknown;
217
+ statusMessage: string | undefined;
218
+ } & {
219
+ readonly RenderingComponent: React.FC<{
220
+ model: {
221
+ id: string;
222
+ type: string;
223
+ rpcDriverName: string | undefined;
224
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
225
+ rendererTypeName: string;
226
+ error: unknown;
227
+ statusMessage: string | undefined;
228
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
229
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
230
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
231
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
232
+ }, {
233
+ rendererTypeName: string;
234
+ error: unknown;
235
+ statusMessage: string | undefined;
236
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
237
+ onHorizontalScroll?: () => void;
238
+ blockState?: Record<string, any>;
239
+ }>;
240
+ readonly DisplayBlurb: React.FC<{
241
+ model: {
242
+ id: string;
243
+ type: string;
244
+ rpcDriverName: string | undefined;
245
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
246
+ rendererTypeName: string;
247
+ error: unknown;
248
+ statusMessage: string | undefined;
249
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
250
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
251
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
252
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
253
+ }, {
254
+ rendererTypeName: string;
255
+ error: unknown;
256
+ statusMessage: string | undefined;
257
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
258
+ }> | null;
259
+ readonly adapterConfig: any;
260
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
261
+ readonly parentDisplay: any;
262
+ readonly effectiveRpcDriverName: any;
263
+ } & {
264
+ renderProps(): any;
265
+ renderingProps(): {
266
+ displayModel: {
267
+ id: string;
268
+ type: string;
269
+ rpcDriverName: string | undefined;
270
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
271
+ rendererTypeName: string;
272
+ error: unknown;
273
+ statusMessage: string | undefined;
274
+ } & {
275
+ readonly RenderingComponent: React.FC<{
276
+ model: {
277
+ id: string;
278
+ type: string;
279
+ rpcDriverName: string | undefined;
280
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
281
+ rendererTypeName: string;
282
+ error: unknown;
283
+ statusMessage: string | undefined;
284
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
285
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
286
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
287
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
288
+ }, {
289
+ rendererTypeName: string;
290
+ error: unknown;
291
+ statusMessage: string | undefined;
292
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
293
+ onHorizontalScroll?: () => void;
294
+ blockState?: Record<string, any>;
295
+ }>;
296
+ readonly DisplayBlurb: React.FC<{
297
+ model: {
298
+ id: string;
299
+ type: string;
300
+ rpcDriverName: string | undefined;
301
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
302
+ rendererTypeName: string;
303
+ error: unknown;
304
+ statusMessage: string | undefined;
305
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
306
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
307
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
308
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
309
+ }, {
310
+ rendererTypeName: string;
311
+ error: unknown;
312
+ statusMessage: string | undefined;
313
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
314
+ }> | null;
315
+ readonly adapterConfig: any;
316
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
317
+ readonly parentDisplay: any;
318
+ readonly effectiveRpcDriverName: any;
319
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
320
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
321
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
322
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
323
+ }, {
324
+ rendererTypeName: string;
325
+ error: unknown;
326
+ statusMessage: string | undefined;
327
+ } & {
328
+ readonly RenderingComponent: React.FC<{
329
+ model: {
330
+ id: string;
331
+ type: string;
332
+ rpcDriverName: string | undefined;
333
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
334
+ rendererTypeName: string;
335
+ error: unknown;
336
+ statusMessage: string | undefined;
337
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
338
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
339
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
340
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
341
+ }, {
342
+ rendererTypeName: string;
343
+ error: unknown;
344
+ statusMessage: string | undefined;
345
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
346
+ onHorizontalScroll?: () => void;
347
+ blockState?: Record<string, any>;
348
+ }>;
349
+ readonly DisplayBlurb: React.FC<{
350
+ model: {
351
+ id: string;
352
+ type: string;
353
+ rpcDriverName: string | undefined;
354
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
355
+ rendererTypeName: string;
356
+ error: unknown;
357
+ statusMessage: string | undefined;
358
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
359
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
360
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
361
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
362
+ }, {
363
+ rendererTypeName: string;
364
+ error: unknown;
365
+ statusMessage: string | undefined;
366
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
367
+ }> | null;
368
+ readonly adapterConfig: any;
369
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
370
+ readonly parentDisplay: any;
371
+ readonly effectiveRpcDriverName: any;
372
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
373
+ };
374
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
375
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
376
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
377
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
378
+ regionCannotBeRendered(): null;
379
+ } & {
380
+ setStatusMessage(arg?: string): void;
381
+ setError(error?: unknown): void;
382
+ setRpcDriverName(rpcDriverName: string): void;
383
+ reload(): void;
384
+ } & {
385
+ filled: boolean;
386
+ reactElement: React.ReactElement | undefined;
387
+ data: undefined;
388
+ html: string | undefined;
389
+ message: string;
390
+ renderingComponent: undefined | AnyReactComponentType;
391
+ refNameMap: Record<string, string> | undefined;
392
+ } & {
393
+ onChordClick(feature: Feature): void;
394
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
395
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
396
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
397
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
398
+ } & {
399
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"ChordVariantDisplay">;
400
+ bezierRadiusRatio: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
401
+ assemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
402
+ configuration: AnyConfigurationSchemaType;
403
+ }, {
404
+ rendererTypeName: string;
405
+ error: unknown;
406
+ statusMessage: string | undefined;
407
+ } & {
408
+ readonly RenderingComponent: React.FC<{
409
+ model: {
410
+ id: string;
411
+ type: string;
412
+ rpcDriverName: string | undefined;
413
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
414
+ rendererTypeName: string;
415
+ error: unknown;
416
+ statusMessage: string | undefined;
417
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
418
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
419
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
420
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
421
+ }, {
422
+ rendererTypeName: string;
423
+ error: unknown;
424
+ statusMessage: string | undefined;
425
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
426
+ onHorizontalScroll?: () => void;
427
+ blockState?: Record<string, any>;
428
+ }>;
429
+ readonly DisplayBlurb: React.FC<{
430
+ model: {
431
+ id: string;
432
+ type: string;
433
+ rpcDriverName: string | undefined;
434
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
435
+ rendererTypeName: string;
436
+ error: unknown;
437
+ statusMessage: string | undefined;
438
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
439
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
440
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
441
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
442
+ }, {
443
+ rendererTypeName: string;
444
+ error: unknown;
445
+ statusMessage: string | undefined;
446
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
447
+ }> | null;
448
+ readonly adapterConfig: any;
449
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
450
+ readonly parentDisplay: any;
451
+ readonly effectiveRpcDriverName: any;
452
+ } & {
453
+ renderProps(): any;
454
+ renderingProps(): {
455
+ displayModel: {
456
+ id: string;
457
+ type: string;
458
+ rpcDriverName: string | undefined;
459
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
460
+ rendererTypeName: string;
461
+ error: unknown;
462
+ statusMessage: string | undefined;
463
+ } & {
464
+ readonly RenderingComponent: React.FC<{
465
+ model: {
466
+ id: string;
467
+ type: string;
468
+ rpcDriverName: string | undefined;
469
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
470
+ rendererTypeName: string;
471
+ error: unknown;
472
+ statusMessage: string | undefined;
473
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
474
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
475
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
476
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
477
+ }, {
478
+ rendererTypeName: string;
479
+ error: unknown;
480
+ statusMessage: string | undefined;
481
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
482
+ onHorizontalScroll?: () => void;
483
+ blockState?: Record<string, any>;
484
+ }>;
485
+ readonly DisplayBlurb: React.FC<{
486
+ model: {
487
+ id: string;
488
+ type: string;
489
+ rpcDriverName: string | undefined;
490
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
491
+ rendererTypeName: string;
492
+ error: unknown;
493
+ statusMessage: string | undefined;
494
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
495
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
496
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
497
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
498
+ }, {
499
+ rendererTypeName: string;
500
+ error: unknown;
501
+ statusMessage: string | undefined;
502
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
503
+ }> | null;
504
+ readonly adapterConfig: any;
505
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
506
+ readonly parentDisplay: any;
507
+ readonly effectiveRpcDriverName: any;
508
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
509
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
510
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
511
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
512
+ }, {
513
+ rendererTypeName: string;
514
+ error: unknown;
515
+ statusMessage: string | undefined;
516
+ } & {
517
+ readonly RenderingComponent: React.FC<{
518
+ model: {
519
+ id: string;
520
+ type: string;
521
+ rpcDriverName: string | undefined;
522
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
523
+ rendererTypeName: string;
524
+ error: unknown;
525
+ statusMessage: string | undefined;
526
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
527
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
528
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
529
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
530
+ }, {
531
+ rendererTypeName: string;
532
+ error: unknown;
533
+ statusMessage: string | undefined;
534
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
535
+ onHorizontalScroll?: () => void;
536
+ blockState?: Record<string, any>;
537
+ }>;
538
+ readonly DisplayBlurb: React.FC<{
539
+ model: {
540
+ id: string;
541
+ type: string;
542
+ rpcDriverName: string | undefined;
543
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
544
+ rendererTypeName: string;
545
+ error: unknown;
546
+ statusMessage: string | undefined;
547
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
548
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
549
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
550
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
551
+ }, {
552
+ rendererTypeName: string;
553
+ error: unknown;
554
+ statusMessage: string | undefined;
555
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
556
+ }> | null;
557
+ readonly adapterConfig: any;
558
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
559
+ readonly parentDisplay: any;
560
+ readonly effectiveRpcDriverName: any;
561
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
562
+ };
563
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
564
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
565
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
566
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
567
+ regionCannotBeRendered(): null;
568
+ } & {
569
+ setStatusMessage(arg?: string): void;
570
+ setError(error?: unknown): void;
571
+ setRpcDriverName(rpcDriverName: string): void;
572
+ reload(): void;
573
+ } & {
574
+ filled: boolean;
575
+ reactElement: React.ReactElement | undefined;
576
+ data: undefined;
577
+ html: string | undefined;
578
+ message: string;
579
+ renderingComponent: undefined | AnyReactComponentType;
580
+ refNameMap: Record<string, string> | undefined;
581
+ } & {
582
+ onChordClick(feature: Feature): void;
583
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
584
+ onChordClick: (arg: Feature) => void;
585
+ };
94
586
  } & {
95
587
  renderStarted(): void;
96
588
  renderSuccess({ message, data, reactElement, html, renderingComponent, }: {
@@ -98,18 +590,15 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
98
590
  data?: any;
99
591
  html?: string;
100
592
  reactElement?: React.ReactElement;
101
- renderingComponent?: import("@jbrowse/core/util").AnyReactComponentType;
593
+ renderingComponent?: AnyReactComponentType;
102
594
  }): void;
103
595
  renderError(error: unknown): void;
104
596
  setRefNameMap(refNameMap: Record<string, string>): void;
105
597
  } & {
106
598
  afterAttach(): void;
107
599
  } & {
108
- renderSvg(opts: import("@jbrowse/plugin-circular-view/src/CircularView/model").ExportSvgOptions & {
109
- theme?: import("@mui/material").ThemeOptions;
600
+ renderSvg(opts: ExportSvgOptions & {
601
+ theme?: ThemeOptions;
110
602
  }): Promise<import("react/jsx-runtime").JSX.Element>;
111
- } & {
112
- readonly rendererTypeName: any;
113
- renderProps(): Record<string, unknown>;
114
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
603
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
115
604
  export default stateModelFactory;