@jbrowse/plugin-variants 3.7.0 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/ChordVariantDisplay/components/ChordVariantDisplay.d.ts +11 -0
- package/esm/ChordVariantDisplay/components/ChordVariantDisplay.js +16 -0
- package/esm/ChordVariantDisplay/components/DisplayError.d.ts +9 -0
- package/esm/ChordVariantDisplay/components/DisplayError.js +7 -0
- package/esm/ChordVariantDisplay/components/Loading.d.ts +8 -0
- package/esm/ChordVariantDisplay/components/Loading.js +28 -0
- package/esm/ChordVariantDisplay/index.js +4 -4
- package/esm/ChordVariantDisplay/models/configSchema.d.ts +4 -5
- package/esm/ChordVariantDisplay/models/configSchema.js +10 -5
- package/esm/ChordVariantDisplay/models/renderReaction.d.ts +30 -0
- package/esm/ChordVariantDisplay/models/renderReaction.js +48 -0
- package/esm/ChordVariantDisplay/models/renderSvg.d.ts +6 -0
- package/esm/ChordVariantDisplay/models/renderSvg.js +12 -0
- package/esm/ChordVariantDisplay/models/stateModelFactory.d.ts +535 -46
- package/esm/ChordVariantDisplay/models/stateModelFactory.js +146 -8
- package/esm/LinearVariantDisplay/configSchema.d.ts +5 -5
- package/esm/LinearVariantDisplay/configSchema.js +2 -2
- package/esm/LinearVariantDisplay/index.js +6 -4
- package/esm/LinearVariantDisplay/model.d.ts +1086 -103
- package/esm/LinearVariantDisplay/model.js +10 -26
- package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +8 -18
- package/esm/MultiLinearVariantDisplay/configSchema.d.ts +6 -44
- package/esm/MultiLinearVariantDisplay/configSchema.js +2 -2
- package/esm/MultiLinearVariantDisplay/index.js +4 -3
- package/esm/MultiLinearVariantDisplay/model.d.ts +1031 -125
- package/esm/MultiLinearVariantDisplay/model.js +3 -23
- package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearVariantDisplay/renderSvg.js +4 -4
- package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +8 -2
- package/esm/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +26 -23
- package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +9 -20
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +6 -6
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/index.js +5 -4
- package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +1110 -131
- package/esm/MultiLinearVariantMatrixDisplay/model.js +22 -48
- package/esm/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixDisplay/renderSvg.js +3 -3
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +4 -35
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +19 -33
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +12 -1
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +48 -22
- package/esm/MultiLinearVariantMatrixRenderer/configSchema.d.ts +1 -1
- package/esm/MultiLinearVariantMatrixRenderer/index.js +4 -4
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +10 -2
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +155 -135
- package/esm/MultiLinearVariantMatrixRenderer/types.d.ts +2 -14
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +3 -60
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +9 -18
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +7 -6
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +30 -26
- package/esm/MultiLinearVariantRenderer/configSchema.d.ts +1 -1
- package/esm/MultiLinearVariantRenderer/index.js +4 -4
- package/esm/MultiLinearVariantRenderer/makeImageData.d.ts +14 -11
- package/esm/MultiLinearVariantRenderer/makeImageData.js +127 -110
- package/esm/MultiLinearVariantRenderer/types.d.ts +3 -20
- package/esm/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +1 -1
- package/esm/SplitVcfTabixAdapter/configSchema.d.ts +2 -2
- package/esm/SplitVcfTabixAdapter/index.d.ts +1 -1
- package/esm/SplitVcfTabixAdapter/index.js +3 -3
- package/esm/StructuralVariantChordRenderer/Chord.d.ts +1 -1
- package/esm/StructuralVariantChordRenderer/Chord.js +41 -58
- package/esm/StructuralVariantChordRenderer/ReactComponent.d.ts +3 -3
- package/esm/StructuralVariantChordRenderer/ReactComponent.js +3 -3
- package/esm/StructuralVariantChordRenderer/configSchema.d.ts +2 -2
- package/esm/StructuralVariantChordRenderer/index.js +3 -3
- package/esm/Tooltip.js +2 -2
- package/esm/VariantFeatureWidget/AltFormatter.js +1 -1
- package/esm/VariantFeatureWidget/Formatter.js +2 -2
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.d.ts +1 -0
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakpointSplitViewChoiceDialog.js +1 -0
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +1 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +8 -23
- package/esm/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +1 -1
- package/esm/VariantFeatureWidget/VariantFeatureWidget.d.ts +1 -1
- package/esm/VariantFeatureWidget/VariantFeatureWidget.js +16 -29
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +5 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +68 -59
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +13 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +1 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +72 -30
- package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +2 -2
- package/esm/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +49 -26
- package/esm/VariantFeatureWidget/VariantSampleGrid/types.d.ts +3 -5
- package/esm/VariantFeatureWidget/configSchema.d.ts +1 -1
- package/esm/VariantFeatureWidget/index.js +3 -3
- package/esm/VariantFeatureWidget/stateModelFactory.d.ts +39 -39
- package/esm/VariantFeatureWidget/stateModelFactory.js +1 -1
- package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +2 -7
- package/esm/VariantRPC/MultiVariantClusterGenotypeMatrix.js +3 -14
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +4 -2
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +2 -5
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +2 -2
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +34 -19
- package/esm/VariantRPC/MultiVariantGetSources.js +2 -6
- package/esm/VariantRPC/executeClusterGenotypeMatrix.d.ts +22 -0
- package/esm/VariantRPC/executeClusterGenotypeMatrix.js +19 -0
- package/esm/VariantRPC/getGenotypeMatrix.d.ts +18 -3
- package/esm/VariantRPC/getGenotypeMatrix.js +23 -40
- package/esm/VariantRPC/types.d.ts +10 -24
- package/esm/VariantTrack/configSchema.d.ts +16 -11
- package/esm/VariantTrack/index.js +13 -2
- package/esm/VariantTrack/saveTrackFormats/vcf.d.ts +4 -0
- package/esm/VariantTrack/saveTrackFormats/vcf.js +15 -0
- package/esm/VcfAdapter/VcfAdapter.d.ts +6 -3
- package/esm/VcfAdapter/VcfAdapter.js +36 -24
- package/esm/VcfAdapter/configSchema.d.ts +2 -2
- package/esm/VcfAdapter/index.js +3 -2
- package/esm/VcfExtensionPoints/index.d.ts +2 -0
- package/esm/{extensionPoints.js → VcfExtensionPoints/index.js} +1 -1
- package/esm/VcfFeature/index.js +20 -8
- package/esm/VcfFeature/util.d.ts +0 -1
- package/esm/VcfFeature/util.js +70 -188
- package/esm/VcfTabixAdapter/VcfTabixAdapter.d.ts +2 -0
- package/esm/VcfTabixAdapter/VcfTabixAdapter.js +28 -3
- package/esm/VcfTabixAdapter/configSchema.d.ts +5 -5
- package/esm/VcfTabixAdapter/configSchema.js +1 -1
- package/esm/VcfTabixAdapter/index.d.ts +1 -1
- package/esm/VcfTabixAdapter/index.js +4 -3
- package/esm/d3-hierarchy2/accessors.d.ts +2 -0
- package/esm/d3-hierarchy2/accessors.js +8 -0
- package/esm/d3-hierarchy2/array.d.ts +2 -0
- package/esm/d3-hierarchy2/array.js +15 -0
- package/esm/d3-hierarchy2/cluster.d.ts +8 -0
- package/esm/d3-hierarchy2/cluster.js +63 -0
- package/esm/d3-hierarchy2/constant.d.ts +2 -0
- package/esm/d3-hierarchy2/constant.js +8 -0
- package/esm/d3-hierarchy2/hierarchy/ancestors.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/ancestors.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/count.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/count.js +12 -0
- package/esm/d3-hierarchy2/hierarchy/descendants.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/descendants.js +3 -0
- package/esm/d3-hierarchy2/hierarchy/each.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/each.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/eachAfter.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/eachAfter.js +15 -0
- package/esm/d3-hierarchy2/hierarchy/eachBefore.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/eachBefore.js +12 -0
- package/esm/d3-hierarchy2/hierarchy/find.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/find.js +8 -0
- package/esm/d3-hierarchy2/hierarchy/index.d.ts +3 -0
- package/esm/d3-hierarchy2/hierarchy/index.js +78 -0
- package/esm/d3-hierarchy2/hierarchy/iterator.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/iterator.js +14 -0
- package/esm/d3-hierarchy2/hierarchy/leaves.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/leaves.js +9 -0
- package/esm/d3-hierarchy2/hierarchy/links.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/links.js +9 -0
- package/esm/d3-hierarchy2/hierarchy/path.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/path.js +26 -0
- package/esm/d3-hierarchy2/hierarchy/sort.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/sort.js +7 -0
- package/esm/d3-hierarchy2/hierarchy/sum.d.ts +1 -0
- package/esm/d3-hierarchy2/hierarchy/sum.js +8 -0
- package/esm/d3-hierarchy2/index.d.ts +15 -0
- package/esm/d3-hierarchy2/index.js +15 -0
- package/esm/d3-hierarchy2/lcg.d.ts +1 -0
- package/esm/d3-hierarchy2/lcg.js +7 -0
- package/esm/d3-hierarchy2/pack/enclose.d.ts +10 -0
- package/esm/d3-hierarchy2/pack/enclose.js +84 -0
- package/esm/d3-hierarchy2/pack/index.d.ts +7 -0
- package/esm/d3-hierarchy2/pack/index.js +68 -0
- package/esm/d3-hierarchy2/pack/siblings.d.ts +2 -0
- package/esm/d3-hierarchy2/pack/siblings.js +94 -0
- package/esm/d3-hierarchy2/partition.d.ts +6 -0
- package/esm/d3-hierarchy2/partition.js +42 -0
- package/esm/d3-hierarchy2/stratify.d.ts +9 -0
- package/esm/d3-hierarchy2/stratify.js +115 -0
- package/esm/d3-hierarchy2/tree.d.ts +8 -0
- package/esm/d3-hierarchy2/tree.js +153 -0
- package/esm/d3-hierarchy2/treemap/binary.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/binary.js +36 -0
- package/esm/d3-hierarchy2/treemap/dice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/dice.js +7 -0
- package/esm/d3-hierarchy2/treemap/index.d.ts +17 -0
- package/esm/d3-hierarchy2/treemap/index.js +72 -0
- package/esm/d3-hierarchy2/treemap/resquarify.d.ts +5 -0
- package/esm/d3-hierarchy2/treemap/resquarify.js +28 -0
- package/esm/d3-hierarchy2/treemap/round.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/round.js +6 -0
- package/esm/d3-hierarchy2/treemap/slice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/slice.js +7 -0
- package/esm/d3-hierarchy2/treemap/sliceDice.d.ts +1 -0
- package/esm/d3-hierarchy2/treemap/sliceDice.js +5 -0
- package/esm/d3-hierarchy2/treemap/squarify.d.ts +11 -0
- package/esm/d3-hierarchy2/treemap/squarify.js +46 -0
- package/esm/index.d.ts +1 -1
- package/esm/index.js +19 -22
- package/esm/shared/MultiVariantBaseModel.d.ts +1103 -117
- package/esm/shared/MultiVariantBaseModel.js +231 -65
- package/esm/shared/SharedVariantConfigSchema.d.ts +2 -40
- package/esm/shared/SharedVariantConfigSchema.js +1 -46
- package/esm/shared/components/AddFiltersDialog.d.ts +2 -3
- package/esm/shared/components/AddFiltersDialog.js +20 -28
- package/esm/shared/components/{ui/SetColorDialog.d.ts → BaseSetColorDialog.d.ts} +2 -1
- package/esm/shared/components/BaseSetColorDialog.js +61 -0
- package/esm/shared/components/ClearTreeWarningDialog.d.ts +4 -0
- package/esm/shared/components/ClearTreeWarningDialog.js +9 -0
- package/esm/shared/components/MAFFilterDialog.d.ts +2 -3
- package/esm/shared/components/MAFFilterDialog.js +4 -8
- package/esm/shared/components/MultiVariantBaseDisplayComponent.d.ts +1 -1
- package/esm/shared/components/MultiVariantBaseDisplayComponent.js +8 -17
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialog.js +3 -3
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +9 -14
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +1 -1
- package/esm/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +11 -15
- package/esm/shared/components/MultiVariantClusterDialog/types.d.ts +3 -2
- package/esm/shared/components/MultiVariantColorLegend.d.ts +1 -1
- package/esm/shared/components/MultiVariantColorLegend.js +22 -12
- package/esm/shared/components/MultiVariantCrosshairs.d.ts +4 -2
- package/esm/shared/components/MultiVariantCrosshairs.js +31 -23
- package/esm/shared/components/MultiVariantLegendBar.d.ts +4 -4
- package/esm/shared/components/MultiVariantLegendBar.js +24 -22
- package/esm/shared/components/MultiVariantLegendBarWrapper.d.ts +7 -0
- package/esm/shared/components/MultiVariantLegendBarWrapper.js +18 -0
- package/esm/shared/components/MultiVariantTooltip.d.ts +5 -6
- package/esm/shared/components/MultiVariantTooltip.js +35 -17
- package/esm/shared/components/ScrollableVariantContainer.d.ts +8 -0
- package/esm/shared/components/ScrollableVariantContainer.js +23 -0
- package/esm/shared/components/SetColorDialog.d.ts +3 -2
- package/esm/shared/components/SetColorDialog.js +2 -2
- package/esm/shared/components/SetColorDialogBulkEditPanel.d.ts +7 -8
- package/esm/shared/components/SetColorDialogBulkEditPanel.js +24 -54
- package/esm/shared/components/SetColorDialogRowPalettizer.js +13 -23
- package/esm/shared/components/SetRowHeightDialog.d.ts +2 -3
- package/esm/shared/components/SourcesDataGrid.d.ts +1 -1
- package/esm/shared/components/SourcesDataGrid.js +1 -1
- package/esm/shared/components/SourcesGrid.d.ts +1 -1
- package/esm/shared/components/SourcesGrid.js +2 -2
- package/esm/shared/components/SourcesGridHeader.d.ts +1 -1
- package/esm/shared/components/SourcesGridHeader.js +1 -1
- package/esm/shared/components/SvgTree.d.ts +5 -0
- package/esm/shared/components/SvgTree.js +19 -0
- package/esm/shared/components/TreeSidebar.d.ts +5 -0
- package/esm/shared/components/TreeSidebar.js +121 -0
- package/esm/shared/components/types.d.ts +43 -0
- package/esm/shared/components/types.js +1 -0
- package/esm/shared/constants.d.ts +8 -2
- package/esm/shared/constants.js +11 -2
- package/esm/shared/drawAlleleCount.d.ts +2 -1
- package/esm/shared/drawAlleleCount.js +50 -16
- package/esm/shared/drawPhased.js +11 -12
- package/{dist → esm/shared}/getMultiVariantFeaturesAutorun.d.ts +5 -4
- package/esm/{getMultiVariantFeaturesAutorun.js → shared/getMultiVariantFeaturesAutorun.js} +9 -2
- package/esm/{getMultiVariantSourcesAutorun.d.ts → shared/getMultiVariantSourcesAutorun.d.ts} +4 -3
- package/esm/{getMultiVariantSourcesAutorun.js → shared/getMultiVariantSourcesAutorun.js} +10 -2
- package/esm/shared/getSources.d.ts +1 -1
- package/esm/shared/getSources.js +2 -2
- package/esm/shared/hooks/useMouseTracking.d.ts +6 -0
- package/esm/shared/hooks/useMouseTracking.js +34 -0
- package/esm/shared/makeSidebarSvg.d.ts +9 -0
- package/esm/shared/makeSidebarSvg.js +9 -0
- package/esm/shared/minorAlleleFrequencyUtils.d.ts +6 -5
- package/esm/shared/minorAlleleFrequencyUtils.js +37 -38
- package/esm/shared/setupMultiVariantAutoruns.d.ts +2 -0
- package/esm/shared/setupMultiVariantAutoruns.js +8 -0
- package/esm/shared/treeDrawingAutorun.d.ts +16 -0
- package/esm/shared/treeDrawingAutorun.js +71 -0
- package/esm/shared/types.d.ts +15 -0
- package/package.json +38 -39
- package/dist/ChordVariantDisplay/index.d.ts +0 -2
- package/dist/ChordVariantDisplay/index.js +0 -25
- package/dist/ChordVariantDisplay/models/configSchema.d.ts +0 -12
- package/dist/ChordVariantDisplay/models/configSchema.js +0 -15
- package/dist/ChordVariantDisplay/models/stateModelFactory.d.ts +0 -115
- package/dist/ChordVariantDisplay/models/stateModelFactory.js +0 -35
- package/dist/LinearVariantDisplay/configSchema.d.ts +0 -34
- package/dist/LinearVariantDisplay/configSchema.js +0 -12
- package/dist/LinearVariantDisplay/index.d.ts +0 -2
- package/dist/LinearVariantDisplay/index.js +0 -24
- package/dist/LinearVariantDisplay/model.d.ts +0 -278
- package/dist/LinearVariantDisplay/model.js +0 -37
- package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearVariantDisplay/components/VariantDisplayComponent.js +0 -29
- package/dist/MultiLinearVariantDisplay/configSchema.d.ts +0 -80
- package/dist/MultiLinearVariantDisplay/configSchema.js +0 -30
- package/dist/MultiLinearVariantDisplay/index.d.ts +0 -2
- package/dist/MultiLinearVariantDisplay/index.js +0 -57
- package/dist/MultiLinearVariantDisplay/model.d.ts +0 -422
- package/dist/MultiLinearVariantDisplay/model.js +0 -82
- package/dist/MultiLinearVariantDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearVariantDisplay/renderSvg.js +0 -15
- package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +0 -6
- package/dist/MultiLinearVariantMatrixDisplay/components/LinesConnectingMatrixToGenomicPosition.js +0 -83
- package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.d.ts +0 -5
- package/dist/MultiLinearVariantMatrixDisplay/components/VariantDisplayComponent.js +0 -31
- package/dist/MultiLinearVariantMatrixDisplay/configSchema.d.ts +0 -37
- package/dist/MultiLinearVariantMatrixDisplay/configSchema.js +0 -22
- package/dist/MultiLinearVariantMatrixDisplay/index.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixDisplay/index.js +0 -24
- package/dist/MultiLinearVariantMatrixDisplay/model.d.ts +0 -431
- package/dist/MultiLinearVariantMatrixDisplay/model.js +0 -125
- package/dist/MultiLinearVariantMatrixDisplay/renderSvg.d.ts +0 -3
- package/dist/MultiLinearVariantMatrixDisplay/renderSvg.js +0 -17
- package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +0 -37
- package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +0 -87
- package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +0 -8
- package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +0 -41
- package/dist/MultiLinearVariantMatrixRenderer/configSchema.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixRenderer/configSchema.js +0 -6
- package/dist/MultiLinearVariantMatrixRenderer/index.d.ts +0 -2
- package/dist/MultiLinearVariantMatrixRenderer/index.js +0 -20
- package/dist/MultiLinearVariantMatrixRenderer/makeImageData.d.ts +0 -14
- package/dist/MultiLinearVariantMatrixRenderer/makeImageData.js +0 -154
- package/dist/MultiLinearVariantMatrixRenderer/types.d.ts +0 -14
- package/dist/MultiLinearVariantMatrixRenderer/types.js +0 -2
- package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +0 -63
- package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.js +0 -79
- package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +0 -33
- package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +0 -67
- package/dist/MultiLinearVariantRenderer/components/util.d.ts +0 -1
- package/dist/MultiLinearVariantRenderer/components/util.js +0 -15
- package/dist/MultiLinearVariantRenderer/configSchema.d.ts +0 -2
- package/dist/MultiLinearVariantRenderer/configSchema.js +0 -8
- package/dist/MultiLinearVariantRenderer/index.d.ts +0 -2
- package/dist/MultiLinearVariantRenderer/index.js +0 -19
- package/dist/MultiLinearVariantRenderer/makeImageData.d.ts +0 -14
- package/dist/MultiLinearVariantRenderer/makeImageData.js +0 -140
- package/dist/MultiLinearVariantRenderer/types.d.ts +0 -21
- package/dist/MultiLinearVariantRenderer/types.js +0 -2
- package/dist/MultiVariantBaseRenderer.d.ts +0 -46
- package/dist/MultiVariantBaseRenderer.js +0 -39
- package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.d.ts +0 -18
- package/dist/SplitVcfTabixAdapter/SplitVcfTabixAdapter.js +0 -92
- package/dist/SplitVcfTabixAdapter/configSchema.d.ts +0 -23
- package/dist/SplitVcfTabixAdapter/configSchema.js +0 -29
- package/dist/SplitVcfTabixAdapter/index.d.ts +0 -3
- package/dist/SplitVcfTabixAdapter/index.js +0 -52
- package/dist/StructuralVariantChordRenderer/Chord.d.ts +0 -13
- package/dist/StructuralVariantChordRenderer/Chord.js +0 -82
- package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +0 -16
- package/dist/StructuralVariantChordRenderer/ReactComponent.js +0 -30
- package/dist/StructuralVariantChordRenderer/configSchema.d.ts +0 -21
- package/dist/StructuralVariantChordRenderer/configSchema.js +0 -25
- package/dist/StructuralVariantChordRenderer/index.d.ts +0 -2
- package/dist/StructuralVariantChordRenderer/index.js +0 -18
- package/dist/StructuralVariantChordRenderer/types.d.ts +0 -17
- package/dist/StructuralVariantChordRenderer/types.js +0 -2
- package/dist/Tooltip.d.ts +0 -19
- package/dist/Tooltip.js +0 -32
- package/dist/VariantFeatureWidget/AltFormatter.d.ts +0 -4
- package/dist/VariantFeatureWidget/AltFormatter.js +0 -13
- package/dist/VariantFeatureWidget/Checkbox2.d.ts +0 -6
- package/dist/VariantFeatureWidget/Checkbox2.js +0 -8
- package/dist/VariantFeatureWidget/Formatter.d.ts +0 -3
- package/dist/VariantFeatureWidget/Formatter.js +0 -23
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js +0 -5
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js +0 -5
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.d.ts +0 -7
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendPanel.js +0 -111
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js +0 -60
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts +0 -1
- package/dist/VariantFeatureWidget/LaunchBreakendPanel/index.js +0 -8
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGrid.js +0 -15
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGridWrapper.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantConsequence/VariantConsequenceDataGridWrapper.js +0 -18
- package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantFeatureWidget.js +0 -103
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.d.ts +0 -4
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantGenotypeFrequencyTable.js +0 -80
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.d.ts +0 -9
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleFilters.js +0 -10
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.d.ts +0 -6
- package/dist/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +0 -54
- package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.d.ts +0 -5
- package/dist/VariantFeatureWidget/VariantSampleGrid/getSampleGridRows.js +0 -51
- package/dist/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantSampleGrid/index.js +0 -8
- package/dist/VariantFeatureWidget/VariantSampleGrid/types.d.ts +0 -21
- package/dist/VariantFeatureWidget/VariantSampleGrid/types.js +0 -2
- package/dist/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantSampleGrid/util.js +0 -14
- package/dist/VariantFeatureWidget/configSchema.d.ts +0 -1
- package/dist/VariantFeatureWidget/configSchema.js +0 -5
- package/dist/VariantFeatureWidget/index.d.ts +0 -2
- package/dist/VariantFeatureWidget/index.js +0 -52
- package/dist/VariantFeatureWidget/stateModelFactory.d.ts +0 -104
- package/dist/VariantFeatureWidget/stateModelFactory.js +0 -12
- package/dist/VariantFeatureWidget/types.d.ts +0 -16
- package/dist/VariantFeatureWidget/types.js +0 -2
- package/dist/VariantFeatureWidget/variantFieldDescriptions.d.ts +0 -9
- package/dist/VariantFeatureWidget/variantFieldDescriptions.js +0 -12
- package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.d.ts +0 -14
- package/dist/VariantRPC/MultiVariantClusterGenotypeMatrix.js +0 -30
- package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.d.ts +0 -6
- package/dist/VariantRPC/MultiVariantGetGenotypeMatrix.js +0 -21
- package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.d.ts +0 -19
- package/dist/VariantRPC/MultiVariantGetSimplifiedFeatures.js +0 -58
- package/dist/VariantRPC/MultiVariantGetSources.d.ts +0 -14
- package/dist/VariantRPC/MultiVariantGetSources.js +0 -22
- package/dist/VariantRPC/getGenotypeMatrix.d.ts +0 -6
- package/dist/VariantRPC/getGenotypeMatrix.js +0 -68
- package/dist/VariantRPC/types.d.ts +0 -36
- package/dist/VariantRPC/types.js +0 -2
- package/dist/VariantTrack/configSchema.d.ts +0 -79
- package/dist/VariantTrack/configSchema.js +0 -10
- package/dist/VariantTrack/index.d.ts +0 -2
- package/dist/VariantTrack/index.js +0 -20
- package/dist/VcfAdapter/VcfAdapter.d.ts +0 -35
- package/dist/VcfAdapter/VcfAdapter.js +0 -119
- package/dist/VcfAdapter/configSchema.d.ts +0 -18
- package/dist/VcfAdapter/configSchema.js +0 -35
- package/dist/VcfAdapter/index.d.ts +0 -2
- package/dist/VcfAdapter/index.js +0 -49
- package/dist/VcfAdapter/vcfParser.d.ts +0 -7
- package/dist/VcfAdapter/vcfParser.js +0 -26
- package/dist/VcfFeature/index.d.ts +0 -19
- package/dist/VcfFeature/index.js +0 -80
- package/dist/VcfFeature/util.d.ts +0 -6
- package/dist/VcfFeature/util.js +0 -227
- package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +0 -25
- package/dist/VcfTabixAdapter/VcfTabixAdapter.js +0 -117
- package/dist/VcfTabixAdapter/configSchema.d.ts +0 -32
- package/dist/VcfTabixAdapter/configSchema.js +0 -56
- package/dist/VcfTabixAdapter/index.d.ts +0 -3
- package/dist/VcfTabixAdapter/index.js +0 -52
- package/dist/extensionPoints.d.ts +0 -2
- package/dist/extensionPoints.js +0 -39
- package/dist/getMultiVariantFeaturesAutorun.js +0 -48
- package/dist/getMultiVariantSourcesAutorun.d.ts +0 -11
- package/dist/getMultiVariantSourcesAutorun.js +0 -38
- package/dist/index.d.ts +0 -7
- package/dist/index.js +0 -52
- package/dist/shared/MultiVariantBaseModel.d.ts +0 -413
- package/dist/shared/MultiVariantBaseModel.js +0 -373
- package/dist/shared/SharedVariantConfigSchema.d.ts +0 -66
- package/dist/shared/SharedVariantConfigSchema.js +0 -56
- package/dist/shared/SharedVariantMixin.d.ts +0 -325
- package/dist/shared/SharedVariantMixin.js +0 -58
- package/dist/shared/components/AddFiltersDialog.d.ts +0 -9
- package/dist/shared/components/AddFiltersDialog.js +0 -61
- package/dist/shared/components/MAFFilterDialog.d.ts +0 -8
- package/dist/shared/components/MAFFilterDialog.js +0 -28
- package/dist/shared/components/MultiVariantBaseDisplayComponent.d.ts +0 -5
- package/dist/shared/components/MultiVariantBaseDisplayComponent.js +0 -29
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.d.ts +0 -6
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialog.js +0 -29
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.d.ts +0 -7
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogAuto.js +0 -74
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.d.ts +0 -7
- package/dist/shared/components/MultiVariantClusterDialog/ClusterDialogManual.js +0 -145
- package/dist/shared/components/MultiVariantClusterDialog/types.d.ts +0 -10
- package/dist/shared/components/MultiVariantClusterDialog/types.js +0 -2
- package/dist/shared/components/MultiVariantColorLegend.d.ts +0 -10
- package/dist/shared/components/MultiVariantColorLegend.js +0 -24
- package/dist/shared/components/MultiVariantCrosshairs.d.ts +0 -7
- package/dist/shared/components/MultiVariantCrosshairs.js +0 -40
- package/dist/shared/components/MultiVariantLegendBar.d.ts +0 -7
- package/dist/shared/components/MultiVariantLegendBar.js +0 -32
- package/dist/shared/components/MultiVariantTooltip.d.ts +0 -10
- package/dist/shared/components/MultiVariantTooltip.js +0 -24
- package/dist/shared/components/RectBg.d.ts +0 -8
- package/dist/shared/components/RectBg.js +0 -10
- package/dist/shared/components/SetColorDialog.d.ts +0 -11
- package/dist/shared/components/SetColorDialog.js +0 -12
- package/dist/shared/components/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/dist/shared/components/SetColorDialogBulkEditPanel.js +0 -84
- package/dist/shared/components/SetColorDialogHelpfulTips.d.ts +0 -1
- package/dist/shared/components/SetColorDialogHelpfulTips.js +0 -7
- package/dist/shared/components/SetColorDialogRowPalettizer.d.ts +0 -10
- package/dist/shared/components/SetColorDialogRowPalettizer.js +0 -41
- package/dist/shared/components/SetMinMaxDialog.d.ts +0 -10
- package/dist/shared/components/SetMinMaxDialog.js +0 -26
- package/dist/shared/components/SetRowHeightDialog.d.ts +0 -8
- package/dist/shared/components/SetRowHeightDialog.js +0 -18
- package/dist/shared/components/SourcesDataGrid.d.ts +0 -7
- package/dist/shared/components/SourcesDataGrid.js +0 -68
- package/dist/shared/components/SourcesGrid.d.ts +0 -7
- package/dist/shared/components/SourcesGrid.js +0 -14
- package/dist/shared/components/SourcesGridHeader.d.ts +0 -8
- package/dist/shared/components/SourcesGridHeader.js +0 -41
- package/dist/shared/components/ui/SetColorDialog.d.ts +0 -31
- package/dist/shared/components/ui/SetColorDialog.js +0 -51
- package/dist/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/dist/shared/components/ui/SetColorDialogBulkEditPanel.js +0 -84
- package/dist/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
- package/dist/shared/components/ui/SetColorDialogHelpfulTips.js +0 -7
- package/dist/shared/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
- package/dist/shared/components/ui/SetColorDialogRowPalettizer.js +0 -41
- package/dist/shared/constants.d.ts +0 -2
- package/dist/shared/constants.js +0 -5
- package/dist/shared/drawAlleleCount.d.ts +0 -2
- package/dist/shared/drawAlleleCount.js +0 -50
- package/dist/shared/drawPhased.d.ts +0 -1
- package/dist/shared/drawPhased.js +0 -25
- package/dist/shared/findSecondLargestNumber.d.ts +0 -0
- package/dist/shared/findSecondLargestNumber.js +0 -1
- package/dist/shared/getSources.d.ts +0 -15
- package/dist/shared/getSources.js +0 -34
- package/dist/shared/minorAlleleFrequencyUtils.d.ts +0 -14
- package/dist/shared/minorAlleleFrequencyUtils.js +0 -72
- package/dist/shared/sourcesGridUtils.d.ts +0 -11
- package/dist/shared/sourcesGridUtils.js +0 -32
- package/dist/shared/types.d.ts +0 -14
- package/dist/shared/types.js +0 -2
- package/dist/shared/util.d.ts +0 -2
- package/dist/shared/util.js +0 -21
- package/dist/util.d.ts +0 -0
- package/dist/util.js +0 -1
- package/esm/MultiVariantBaseRenderer.d.ts +0 -46
- package/esm/MultiVariantBaseRenderer.js +0 -33
- package/esm/VariantFeatureWidget/Checkbox2.d.ts +0 -6
- package/esm/VariantFeatureWidget/Checkbox2.js +0 -5
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts +0 -4
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js +0 -24
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts +0 -1
- package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.js +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/index.d.ts +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/index.js +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/util.d.ts +0 -1
- package/esm/VariantFeatureWidget/VariantSampleGrid/util.js +0 -11
- package/esm/extensionPoints.d.ts +0 -2
- package/esm/getMultiVariantFeaturesAutorun.d.ts +0 -18
- package/esm/shared/SharedVariantMixin.d.ts +0 -325
- package/esm/shared/SharedVariantMixin.js +0 -55
- package/esm/shared/components/ui/SetColorDialog.js +0 -45
- package/esm/shared/components/ui/SetColorDialogBulkEditPanel.d.ts +0 -10
- package/esm/shared/components/ui/SetColorDialogBulkEditPanel.js +0 -81
- package/esm/shared/components/ui/SetColorDialogHelpfulTips.d.ts +0 -1
- package/esm/shared/components/ui/SetColorDialogHelpfulTips.js +0 -4
- package/esm/shared/components/ui/SetColorDialogRowPalettizer.d.ts +0 -10
- package/esm/shared/components/ui/SetColorDialogRowPalettizer.js +0 -38
- package/esm/shared/findSecondLargestNumber.d.ts +0 -0
- package/esm/shared/findSecondLargestNumber.js +0 -1
- package/esm/shared/util.d.ts +0 -2
- package/esm/shared/util.js +0 -17
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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}, {
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|
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|
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|
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
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onHorizontalScroll?: () => void;
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blockState?: Record<string, any>;
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}>;
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readonly DisplayBlurb: React.FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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readonly parentDisplay: any;
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readonly effectiveRpcDriverName: any;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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};
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readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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readonly DisplayMessageComponent: undefined | React.FC<any>;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered(): null;
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} & {
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setStatusMessage(arg?: string): void;
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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} & {
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filled: boolean;
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reactElement: React.ReactElement | undefined;
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data: undefined;
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html: string | undefined;
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message: string;
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renderingComponent: undefined | AnyReactComponentType;
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refNameMap: Record<string, string> | undefined;
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+
} & {
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+
onChordClick(feature: Feature): void;
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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395
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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|
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
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398
|
+
} & {
|
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399
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<"ChordVariantDisplay">;
|
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400
|
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bezierRadiusRatio: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
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401
|
+
assemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
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402
|
+
configuration: AnyConfigurationSchemaType;
|
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403
|
+
}, {
|
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404
|
+
rendererTypeName: string;
|
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|
+
error: unknown;
|
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|
+
statusMessage: string | undefined;
|
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+
} & {
|
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408
|
+
readonly RenderingComponent: React.FC<{
|
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model: {
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id: string;
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type: string;
|
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|
+
rpcDriverName: string | undefined;
|
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413
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+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
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|
+
rendererTypeName: string;
|
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415
|
+
error: unknown;
|
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|
+
statusMessage: string | undefined;
|
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417
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
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418
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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419
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
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420
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
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421
|
+
}, {
|
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422
|
+
rendererTypeName: string;
|
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423
|
+
error: unknown;
|
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424
|
+
statusMessage: string | undefined;
|
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425
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
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426
|
+
onHorizontalScroll?: () => void;
|
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427
|
+
blockState?: Record<string, any>;
|
|
428
|
+
}>;
|
|
429
|
+
readonly DisplayBlurb: React.FC<{
|
|
430
|
+
model: {
|
|
431
|
+
id: string;
|
|
432
|
+
type: string;
|
|
433
|
+
rpcDriverName: string | undefined;
|
|
434
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
435
|
+
rendererTypeName: string;
|
|
436
|
+
error: unknown;
|
|
437
|
+
statusMessage: string | undefined;
|
|
438
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
439
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
440
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
441
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
442
|
+
}, {
|
|
443
|
+
rendererTypeName: string;
|
|
444
|
+
error: unknown;
|
|
445
|
+
statusMessage: string | undefined;
|
|
446
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
447
|
+
}> | null;
|
|
448
|
+
readonly adapterConfig: any;
|
|
449
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
450
|
+
readonly parentDisplay: any;
|
|
451
|
+
readonly effectiveRpcDriverName: any;
|
|
452
|
+
} & {
|
|
453
|
+
renderProps(): any;
|
|
454
|
+
renderingProps(): {
|
|
455
|
+
displayModel: {
|
|
456
|
+
id: string;
|
|
457
|
+
type: string;
|
|
458
|
+
rpcDriverName: string | undefined;
|
|
459
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
460
|
+
rendererTypeName: string;
|
|
461
|
+
error: unknown;
|
|
462
|
+
statusMessage: string | undefined;
|
|
463
|
+
} & {
|
|
464
|
+
readonly RenderingComponent: React.FC<{
|
|
465
|
+
model: {
|
|
466
|
+
id: string;
|
|
467
|
+
type: string;
|
|
468
|
+
rpcDriverName: string | undefined;
|
|
469
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
470
|
+
rendererTypeName: string;
|
|
471
|
+
error: unknown;
|
|
472
|
+
statusMessage: string | undefined;
|
|
473
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
474
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
475
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
476
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
477
|
+
}, {
|
|
478
|
+
rendererTypeName: string;
|
|
479
|
+
error: unknown;
|
|
480
|
+
statusMessage: string | undefined;
|
|
481
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
482
|
+
onHorizontalScroll?: () => void;
|
|
483
|
+
blockState?: Record<string, any>;
|
|
484
|
+
}>;
|
|
485
|
+
readonly DisplayBlurb: React.FC<{
|
|
486
|
+
model: {
|
|
487
|
+
id: string;
|
|
488
|
+
type: string;
|
|
489
|
+
rpcDriverName: string | undefined;
|
|
490
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
491
|
+
rendererTypeName: string;
|
|
492
|
+
error: unknown;
|
|
493
|
+
statusMessage: string | undefined;
|
|
494
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
495
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
496
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
497
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
498
|
+
}, {
|
|
499
|
+
rendererTypeName: string;
|
|
500
|
+
error: unknown;
|
|
501
|
+
statusMessage: string | undefined;
|
|
502
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
503
|
+
}> | null;
|
|
504
|
+
readonly adapterConfig: any;
|
|
505
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
506
|
+
readonly parentDisplay: any;
|
|
507
|
+
readonly effectiveRpcDriverName: any;
|
|
508
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
509
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
510
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
511
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
512
|
+
}, {
|
|
513
|
+
rendererTypeName: string;
|
|
514
|
+
error: unknown;
|
|
515
|
+
statusMessage: string | undefined;
|
|
516
|
+
} & {
|
|
517
|
+
readonly RenderingComponent: React.FC<{
|
|
518
|
+
model: {
|
|
519
|
+
id: string;
|
|
520
|
+
type: string;
|
|
521
|
+
rpcDriverName: string | undefined;
|
|
522
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
523
|
+
rendererTypeName: string;
|
|
524
|
+
error: unknown;
|
|
525
|
+
statusMessage: string | undefined;
|
|
526
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
527
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
528
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
529
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
530
|
+
}, {
|
|
531
|
+
rendererTypeName: string;
|
|
532
|
+
error: unknown;
|
|
533
|
+
statusMessage: string | undefined;
|
|
534
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
535
|
+
onHorizontalScroll?: () => void;
|
|
536
|
+
blockState?: Record<string, any>;
|
|
537
|
+
}>;
|
|
538
|
+
readonly DisplayBlurb: React.FC<{
|
|
539
|
+
model: {
|
|
540
|
+
id: string;
|
|
541
|
+
type: string;
|
|
542
|
+
rpcDriverName: string | undefined;
|
|
543
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
544
|
+
rendererTypeName: string;
|
|
545
|
+
error: unknown;
|
|
546
|
+
statusMessage: string | undefined;
|
|
547
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
548
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
549
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
550
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
551
|
+
}, {
|
|
552
|
+
rendererTypeName: string;
|
|
553
|
+
error: unknown;
|
|
554
|
+
statusMessage: string | undefined;
|
|
555
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
556
|
+
}> | null;
|
|
557
|
+
readonly adapterConfig: any;
|
|
558
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
559
|
+
readonly parentDisplay: any;
|
|
560
|
+
readonly effectiveRpcDriverName: any;
|
|
561
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
562
|
+
};
|
|
563
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
564
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
565
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
566
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
567
|
+
regionCannotBeRendered(): null;
|
|
568
|
+
} & {
|
|
569
|
+
setStatusMessage(arg?: string): void;
|
|
570
|
+
setError(error?: unknown): void;
|
|
571
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
572
|
+
reload(): void;
|
|
573
|
+
} & {
|
|
574
|
+
filled: boolean;
|
|
575
|
+
reactElement: React.ReactElement | undefined;
|
|
576
|
+
data: undefined;
|
|
577
|
+
html: string | undefined;
|
|
578
|
+
message: string;
|
|
579
|
+
renderingComponent: undefined | AnyReactComponentType;
|
|
580
|
+
refNameMap: Record<string, string> | undefined;
|
|
581
|
+
} & {
|
|
582
|
+
onChordClick(feature: Feature): void;
|
|
583
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
584
|
+
onChordClick: (arg: Feature) => void;
|
|
585
|
+
};
|
|
94
586
|
} & {
|
|
95
587
|
renderStarted(): void;
|
|
96
588
|
renderSuccess({ message, data, reactElement, html, renderingComponent, }: {
|
|
@@ -98,18 +590,15 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
|
|
|
98
590
|
data?: any;
|
|
99
591
|
html?: string;
|
|
100
592
|
reactElement?: React.ReactElement;
|
|
101
|
-
renderingComponent?:
|
|
593
|
+
renderingComponent?: AnyReactComponentType;
|
|
102
594
|
}): void;
|
|
103
595
|
renderError(error: unknown): void;
|
|
104
596
|
setRefNameMap(refNameMap: Record<string, string>): void;
|
|
105
597
|
} & {
|
|
106
598
|
afterAttach(): void;
|
|
107
599
|
} & {
|
|
108
|
-
renderSvg(opts:
|
|
109
|
-
theme?:
|
|
600
|
+
renderSvg(opts: ExportSvgOptions & {
|
|
601
|
+
theme?: ThemeOptions;
|
|
110
602
|
}): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
111
|
-
}
|
|
112
|
-
readonly rendererTypeName: any;
|
|
113
|
-
renderProps(): Record<string, unknown>;
|
|
114
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
603
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
115
604
|
export default stateModelFactory;
|