@jbrowse/plugin-variants 3.7.0 → 4.0.0

package/dist/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js

@@ -1,87 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const BoxRendererType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType"));
-const util_1 = require("@jbrowse/core/util");
-class LinearVariantMatrixRenderer extends BoxRendererType_1.default {
-    constructor() {
-        super(...arguments);
-        this.supportsSVG = true;
-    }
-    async render(renderProps) {
-        const features = await this.getFeatures(renderProps);
-        const { height, sources, regions, bpPerPx } = renderProps;
-        const region = regions[0];
-        const { end, start } = region;
-        const width = (end - start) / bpPerPx;
-        const { makeImageData } = await Promise.resolve().then(() => __importStar(require('./makeImageData')));
-        const { mafs, ...rest } = await (0, util_1.renderToAbstractCanvas)(width, height, renderProps, ctx => makeImageData({
-            ctx,
-            canvasWidth: width,
-            canvasHeight: height,
-            renderArgs: {
-                ...renderProps,
-                features,
-                sources,
-            },
-        }));
-        const results = await super.render({
-            ...renderProps,
-            ...rest,
-            features,
-            height,
-            width,
-        });
-        return {
-            ...results,
-            ...rest,
-            features: new Map(),
-            simplifiedFeatures: mafs.map(({ feature }) => new util_1.SimpleFeature({
-                id: feature.id(),
-                data: {
-                    start: feature.get('start'),
-                    end: feature.get('end'),
-                    refName: feature.get('refName'),
-                },
-            })),
-            height,
-            width,
-        };
-    }
-}
-exports.default = LinearVariantMatrixRenderer;

package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts

@@ -1,8 +0,0 @@
-import type { MultiVariantBaseModel } from '../../shared/MultiVariantBaseModel';
-declare const MultiLinearVariantMatrixRendering: (props: {
-    width: number;
-    height: number;
-    displayModel: MultiVariantBaseModel;
-    arr: string[][];
-}) => import("react/jsx-runtime").JSX.Element;
-export default MultiLinearVariantMatrixRendering;

package/dist/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js

@@ -1,41 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const mobx_react_1 = require("mobx-react");
-const MultiLinearVariantMatrixRendering = (0, mobx_react_1.observer)(function (props) {
-    const { arr, width, height, displayModel } = props;
-    const ref = (0, react_1.useRef)(null);
-    function getFeatureUnderMouse(eventClientX, eventClientY) {
-        var _a, _b, _c;
-        if (!ref.current) {
-            return;
-        }
-        const r = ref.current.getBoundingClientRect();
-        const offsetX = eventClientX - r.left;
-        const offsetY = eventClientY - r.top;
-        const dimY = arr.length;
-        const dimX = ((_a = arr[0]) === null || _a === void 0 ? void 0 : _a.length) || 0;
-        const name = (_b = displayModel.sources[Math.floor((offsetY / height) * dimX)]) === null || _b === void 0 ? void 0 : _b.name;
-        const genotype = (_c = arr[Math.floor((offsetX / width) * dimY)]) === null || _c === void 0 ? void 0 : _c[Math.floor((offsetY / height) * dimX)];
-        return genotype && name
-            ? {
-                name,
-                genotype,
-            }
-            : undefined;
-    }
-    return ((0, jsx_runtime_1.jsx)("div", { ref: ref, onMouseMove: e => {
-            displayModel.setHoveredGenotype(getFeatureUnderMouse(e.clientX, e.clientY));
-        }, onMouseLeave: () => {
-            displayModel.setHoveredGenotype(undefined);
-        }, onMouseOut: () => {
-            displayModel.setHoveredGenotype(undefined);
-        }, style: {
-            overflow: 'visible',
-            position: 'relative',
-            height,
-        }, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props }) }));
-});
-exports.default = MultiLinearVariantMatrixRendering;

package/dist/MultiLinearVariantMatrixRenderer/configSchema.d.ts

@@ -1,2 +0,0 @@
-declare const LinearVariantMatrixRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default LinearVariantMatrixRenderer;

package/dist/MultiLinearVariantMatrixRenderer/configSchema.js

@@ -1,6 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const LinearVariantMatrixRenderer = (0, configuration_1.ConfigurationSchema)('LinearVariantMatrixRenderer', {}, { explicitlyTyped: true });
-exports.default = LinearVariantMatrixRenderer;

package/dist/MultiLinearVariantMatrixRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinearVariantMatrixRendererF(pluginManager: PluginManager): void;

package/dist/MultiLinearVariantMatrixRenderer/index.js

@@ -1,20 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LinearVariantMatrixRendererF;
-const MultiLinearVariantMatrixRenderer_1 = __importDefault(require("./MultiLinearVariantMatrixRenderer"));
-const MultiLinearVariantMatrixRendering_1 = __importDefault(require("./components/MultiLinearVariantMatrixRendering"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function LinearVariantMatrixRendererF(pluginManager) {
-    pluginManager.addRendererType(() => {
-        return new MultiLinearVariantMatrixRenderer_1.default({
-            name: 'LinearVariantMatrixRenderer',
-            displayName: 'Linear variant matrix renderer',
-            ReactComponent: MultiLinearVariantMatrixRendering_1.default,
-            configSchema: configSchema_1.default,
-            pluginManager,
-        });
-    });
-}

package/dist/MultiLinearVariantMatrixRenderer/makeImageData.d.ts

@@ -1,14 +0,0 @@
-import type { RenderArgsDeserialized } from './types';
-export declare function makeImageData({ ctx, canvasWidth, canvasHeight, renderArgs, }: {
-    ctx: CanvasRenderingContext2D;
-    canvasWidth: number;
-    canvasHeight: number;
-    renderArgs: RenderArgsDeserialized;
-}): Promise<{
-    mafs: {
-        feature: import("@jbrowse/core/util").Feature;
-        mostFrequentAlt: string;
-        alleleCounts: Record<string, number>;
-    }[];
-    arr: string[][];
-}>;

package/dist/MultiLinearVariantMatrixRenderer/makeImageData.js

@@ -1,154 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.makeImageData = makeImageData;
-const util_1 = require("@jbrowse/core/util");
-const stopToken_1 = require("@jbrowse/core/util/stopToken");
-const constants_1 = require("../shared/constants");
-const drawAlleleCount_1 = require("../shared/drawAlleleCount");
-const drawPhased_1 = require("../shared/drawPhased");
-const minorAlleleFrequencyUtils_1 = require("../shared/minorAlleleFrequencyUtils");
-async function makeImageData({ ctx, canvasWidth, canvasHeight, renderArgs, }) {
-    const { renderingMode, minorAlleleFrequencyFilter, sources, features, stopToken, lengthCutoffFilter, } = renderArgs;
-    const { statusCallback = () => { } } = renderArgs;
-    const h = canvasHeight / sources.length;
-    (0, stopToken_1.checkStopToken)(stopToken);
-    const mafs = await (0, util_1.updateStatus)('Calculating stats', statusCallback, () => (0, minorAlleleFrequencyUtils_1.getFeaturesThatPassMinorAlleleFrequencyFilter)({
-        stopToken,
-        features: features.values(),
-        minorAlleleFrequencyFilter,
-        lengthCutoffFilter,
-    }));
-    (0, stopToken_1.checkStopToken)(stopToken);
-    const arr = [];
-    const m = mafs.length;
-    const w = canvasWidth / m;
-    await (0, util_1.updateStatus)('Drawing variant matrix', statusCallback, () => {
-        const colorCache = {};
-        (0, util_1.forEachWithStopTokenCheck)(mafs, stopToken, ({ feature, mostFrequentAlt }, idx) => {
-            var _a, _b, _c;
-            const arr2 = [];
-            const hasPhaseSet = (_a = feature.get('FORMAT')) === null || _a === void 0 ? void 0 : _a.includes('PS');
-            if (hasPhaseSet) {
-                const samp = feature.get('samples');
-                const x = (idx / mafs.length) * canvasWidth;
-                const sln = sources.length;
-                for (let j = 0; j < sln; j++) {
-                    const y = (j / sln) * canvasHeight;
-                    const { name, HP } = sources[j];
-                    const s = samp[name];
-                    if (s) {
-                        const genotype = (_b = s.GT) === null || _b === void 0 ? void 0 : _b[0];
-                        if (genotype) {
-                            arr2.push(genotype);
-                            const isPhased = genotype.includes('|');
-                            if (renderingMode === 'phased') {
-                                if (isPhased) {
-                                    const PS = (_c = s.PS) === null || _c === void 0 ? void 0 : _c[0];
-                                    const alleles = genotype.split('|');
-                                    (0, drawPhased_1.drawPhased)(alleles, ctx, x, y, w, h, HP, PS);
-                                }
-                                else {
-                                    ctx.fillStyle = 'black';
-                                    ctx.fillRect(x - constants_1.f2, y - constants_1.f2, w + constants_1.f2, h + constants_1.f2);
-                                }
-                            }
-                            else {
-                                const cacheKey = `${genotype}:${mostFrequentAlt}`;
-                                let c = colorCache[cacheKey];
-                                if (c === undefined) {
-                                    let alt = 0;
-                                    let uncalled = 0;
-                                    let alt2 = 0;
-                                    let ref = 0;
-                                    const alleles = genotype.split(/[/|]/);
-                                    const total = alleles.length;
-                                    for (let i = 0; i < total; i++) {
-                                        const allele = alleles[i];
-                                        if (allele === mostFrequentAlt) {
-                                            alt++;
-                                        }
-                                        else if (allele === '0') {
-                                            ref++;
-                                        }
-                                        else if (allele === '.') {
-                                            uncalled++;
-                                        }
-                                        else {
-                                            alt2++;
-                                        }
-                                    }
-                                    c = (0, drawAlleleCount_1.getColorAlleleCount)(ref, alt, alt2, uncalled, total, true);
-                                    colorCache[cacheKey] = c;
-                                }
-                                if (c) {
-                                    (0, drawAlleleCount_1.drawColorAlleleCount)(c, ctx, x, y, w, h);
-                                }
-                            }
-                        }
-                    }
-                }
-            }
-            else {
-                const samp = feature.get('genotypes');
-                const x = (idx / mafs.length) * canvasWidth;
-                const sln = sources.length;
-                for (let j = 0; j < sln; j++) {
-                    const y = (j / sln) * canvasHeight;
-                    const { name, HP } = sources[j];
-                    const genotype = samp[name];
-                    if (genotype) {
-                        arr2.push(genotype);
-                        const isPhased = genotype.includes('|');
-                        if (renderingMode === 'phased') {
-                            if (isPhased) {
-                                const alleles = genotype.split('|');
-                                (0, drawPhased_1.drawPhased)(alleles, ctx, x, y, w, h, HP);
-                            }
-                            else {
-                                ctx.fillStyle = 'black';
-                                ctx.fillRect(x - constants_1.f2, y - constants_1.f2, w + constants_1.f2, h + constants_1.f2);
-                            }
-                        }
-                        else {
-                            const cacheKey = `${genotype}:${mostFrequentAlt}`;
-                            let c = colorCache[cacheKey];
-                            if (c === undefined) {
-                                let alt = 0;
-                                let uncalled = 0;
-                                let alt2 = 0;
-                                let ref = 0;
-                                const alleles = genotype.split(/[/|]/);
-                                const total = alleles.length;
-                                for (let i = 0; i < total; i++) {
-                                    const allele = alleles[i];
-                                    if (allele === mostFrequentAlt) {
-                                        alt++;
-                                    }
-                                    else if (allele === '0') {
-                                        ref++;
-                                    }
-                                    else if (allele === '.') {
-                                        uncalled++;
-                                    }
-                                    else {
-                                        alt2++;
-                                    }
-                                }
-                                c = (0, drawAlleleCount_1.getColorAlleleCount)(ref, alt, alt2, uncalled, total, true);
-                                colorCache[cacheKey] = c;
-                            }
-                            if (c) {
-                                (0, drawAlleleCount_1.drawColorAlleleCount)(c, ctx, x, y, w, h);
-                            }
-                        }
-                    }
-                }
-            }
-            arr.push(arr2);
-        });
-    });
-    return {
-        mafs,
-        arr,
-    };
-}

package/dist/MultiLinearVariantMatrixRenderer/types.d.ts

@@ -1,14 +0,0 @@
-import type { Source } from '../shared/types';
-import type { RenderArgsDeserialized as BoxRenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType';
-import type { Feature } from '@jbrowse/core/util';
-export interface RenderArgsDeserialized extends BoxRenderArgsDeserialized {
-    sources: Source[];
-    minorAlleleFrequencyFilter: number;
-    highResolutionScaling: number;
-    height: number;
-    features: Map<string, Feature>;
-    renderingMode: string;
-    statusCallback?: (arg: string) => void;
-    lengthCutoffFilter: number;
-    stopToken: string;
-}

package/dist/MultiLinearVariantMatrixRenderer/types.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts

@@ -1,63 +0,0 @@
-import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-import type { MultiRenderArgsDeserialized } from './types';
-import type { Feature } from '@jbrowse/core/util';
-export default class MultiVariantBaseRenderer extends FeatureRendererType {
-    supportsSVG: boolean;
-    render(renderProps: MultiRenderArgsDeserialized): Promise<{
-        features: Map<string, Feature>;
-        height: number;
-        width: number;
-        containsNoTransferables: boolean;
-        flatbush: ArrayBufferLike;
-        items: any[];
-        featureGenotypeMap: {
-            [k: string]: {
-                alt: any;
-                ref: any;
-                name: any;
-                description: any;
-                length: number;
-            };
-        };
-        canvasRecordedData: Record<string, unknown>;
-        reactElement?: React.ReactElement;
-        html?: string;
-    } | {
-        features: Map<string, Feature>;
-        height: number;
-        width: number;
-        containsNoTransferables: boolean;
-        flatbush: ArrayBufferLike;
-        items: any[];
-        featureGenotypeMap: {
-            [k: string]: {
-                alt: any;
-                ref: any;
-                name: any;
-                description: any;
-                length: number;
-            };
-        };
-        imageData: any;
-        reactElement?: React.ReactElement;
-        html?: string;
-    } | {
-        features: Map<string, Feature>;
-        height: number;
-        width: number;
-        containsNoTransferables: boolean;
-        flatbush: ArrayBufferLike;
-        items: any[];
-        featureGenotypeMap: {
-            [k: string]: {
-                alt: any;
-                ref: any;
-                name: any;
-                description: any;
-                length: number;
-            };
-        };
-        reactElement: React.ReactElement;
-        html?: string;
-    }>;
-}

package/dist/MultiLinearVariantRenderer/MultiVariantRenderer.js

@@ -1,79 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const FeatureRendererType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType"));
-const util_1 = require("@jbrowse/core/util");
-class MultiVariantBaseRenderer extends FeatureRendererType_1.default {
-    constructor() {
-        super(...arguments);
-        this.supportsSVG = true;
-    }
-    async render(renderProps) {
-        const features = await this.getFeatures(renderProps);
-        const { height, referenceDrawingMode, regions, bpPerPx } = renderProps;
-        const region = regions[0];
-        const width = (region.end - region.start) / bpPerPx;
-        const { makeImageData } = await Promise.resolve().then(() => __importStar(require('./makeImageData')));
-        const ret = await (0, util_1.renderToAbstractCanvas)(width, height, renderProps, ctx => {
-            if (referenceDrawingMode === 'skip') {
-                ctx.fillStyle = '#ccc';
-                ctx.fillRect(0, 0, width, height);
-            }
-            return makeImageData(ctx, {
-                ...renderProps,
-                features,
-            });
-        });
-        const results = await super.render({
-            ...renderProps,
-            ...ret,
-            features,
-            height,
-            width,
-        });
-        return {
-            ...results,
-            ...ret,
-            features: new Map(),
-            height,
-            width,
-            containsNoTransferables: true,
-        };
-    }
-}
-exports.default = MultiVariantBaseRenderer;

package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts

@@ -1,33 +0,0 @@
-import type { Source } from '../../shared/types';
-import type { Feature } from '@jbrowse/core/util';
-import type { Region } from '@jbrowse/core/util/types';
-interface Item {
-    genotype: string;
-    featureId: string;
-    bpLen: number;
-}
-interface MinimizedVariantRecord {
-    alt: string[];
-    ref: string;
-    name: string;
-    description: string;
-    length: number;
-}
-declare const MultiVariantRendering: (props: {
-    regions: Region[];
-    features: Map<string, Feature>;
-    bpPerPx: number;
-    width: number;
-    height: number;
-    sources: Source[];
-    scrollTop: number;
-    featureGenotypeMap: Record<string, MinimizedVariantRecord>;
-    totalHeight: number;
-    flatbush: any;
-    items: Item[];
-    displayModel: any;
-    onMouseLeave?: (event: React.MouseEvent) => void;
-    onMouseMove?: (event: React.MouseEvent, arg?: Feature) => void;
-    onFeatureClick?: (event: React.MouseEvent, arg?: Feature) => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default MultiVariantRendering;

package/dist/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js

@@ -1,67 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const flatbush_1 = __importDefault(require("@jbrowse/core/util/flatbush"));
-const mobx_react_1 = require("mobx-react");
-const util_2 = require("./util");
-const util_3 = require("../../VcfFeature/util");
-const MultiVariantRendering = (0, mobx_react_1.observer)(function (props) {
-    const { flatbush, items, displayModel, featureGenotypeMap, totalHeight, scrollTop, } = props;
-    const ref = (0, react_1.useRef)(null);
-    const flatbush2 = (0, react_1.useMemo)(() => flatbush_1.default.from(flatbush), [flatbush]);
-    function getFeatureUnderMouse(eventClientX, eventClientY) {
-        var _a;
-        let offsetX = 0;
-        let offsetY = 0;
-        if (!ref.current) {
-            return;
-        }
-        const rect = ref.current.getBoundingClientRect();
-        offsetX = eventClientX - rect.left;
-        offsetY = eventClientY - rect.top - ((displayModel === null || displayModel === void 0 ? void 0 : displayModel.scrollTop) || 0);
-        const x = flatbush2.search(offsetX, offsetY, offsetX + 1, offsetY + 1);
-        if (x.length) {
-            const res = (0, util_2.minElt)(x, idx => { var _a, _b; return (_b = (_a = items[idx]) === null || _a === void 0 ? void 0 : _a.bpLen) !== null && _b !== void 0 ? _b : 0; });
-            const { bpLen, genotype, featureId, ...rest } = (_a = items[res]) !== null && _a !== void 0 ? _a : {};
-            const ret = featureId !== undefined ? featureGenotypeMap[featureId] : undefined;
-            if (ret && genotype) {
-                const { ref, alt, name, description, length } = ret;
-                const alleles = (0, util_3.makeSimpleAltString)(genotype, ref, alt);
-                return {
-                    ...rest,
-                    genotype,
-                    alleles,
-                    featureName: name,
-                    description: alt.length >= 3 ? 'multiple ALT alleles' : description,
-                    length: (0, util_1.getBpDisplayStr)(length),
-                };
-            }
-        }
-        return undefined;
-    }
-    return ((0, jsx_runtime_1.jsx)("div", { ref: ref, onMouseMove: e => {
-            var _a;
-            return (_a = displayModel.setHoveredGenotype) === null || _a === void 0 ? void 0 : _a.call(displayModel, getFeatureUnderMouse(e.clientX, e.clientY));
-        }, onMouseLeave: () => {
-            var _a;
-            (_a = displayModel.setHoveredGenotype) === null || _a === void 0 ? void 0 : _a.call(displayModel, undefined);
-        }, onMouseOut: () => {
-            var _a;
-            (_a = displayModel.setHoveredGenotype) === null || _a === void 0 ? void 0 : _a.call(displayModel, undefined);
-        }, style: {
-            overflow: 'visible',
-            position: 'relative',
-            height: totalHeight,
-        }, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props, style: {
-                position: 'absolute',
-                left: 0,
-                top: scrollTop,
-            } }) }));
-});
-exports.default = MultiVariantRendering;

package/dist/MultiLinearVariantRenderer/components/util.d.ts

@@ -1 +0,0 @@
-export declare function minElt<T>(arr: Iterable<T>, cb: (arg: T) => number): T | undefined;

package/dist/MultiLinearVariantRenderer/components/util.js

@@ -1,15 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.minElt = minElt;
-function minElt(arr, cb) {
-    let min = Infinity;
-    let minElement;
-    for (const entry of arr) {
-        const val = cb(entry);
-        if (val < min) {
-            min = val;
-            minElement = entry;
-        }
-    }
-    return minElement;
-}

package/dist/MultiLinearVariantRenderer/configSchema.d.ts

@@ -1,2 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default configSchema;

package/dist/MultiLinearVariantRenderer/configSchema.js

@@ -1,8 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('MultiVariantRenderer', {}, {
-    explicitlyTyped: true,
-});
-exports.default = configSchema;

package/dist/MultiLinearVariantRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function MultiVariantRendererF(pluginManager: PluginManager): void;