@jbrowse/plugin-variants 3.7.0 → 4.0.0

package/dist/shared/sourcesGridUtils.js

@@ -1,32 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.moveUp = moveUp;
-exports.moveDown = moveDown;
-function moveUp(arr, sel, by = 1) {
-    const idxs = sel
-        .map(l => arr.findIndex(v => v.name === l))
-        .sort((a, b) => a - b);
-    let lastIdx = 0;
-    for (const old of idxs) {
-        const idx = Math.max(lastIdx, old - by);
-        if (idx >= lastIdx) {
-            arr.splice(idx, 0, arr.splice(old, 1)[0]);
-        }
-        lastIdx = lastIdx + 1;
-    }
-    return arr;
-}
-function moveDown(arr, sel, by = 1) {
-    const idxs = sel
-        .map(l => arr.findIndex(v => v.name === l))
-        .sort((a, b) => b - a);
-    let lastIdx = arr.length - 1;
-    for (const old of idxs) {
-        const idx = Math.min(lastIdx, old + by);
-        if (idx <= lastIdx) {
-            arr.splice(idx, 0, arr.splice(old, 1)[0]);
-        }
-        lastIdx = lastIdx - 1;
-    }
-    return arr;
-}

package/dist/shared/types.d.ts

@@ -1,14 +0,0 @@
-export interface Source {
-    baseUri?: string;
-    name: string;
-    label?: string;
-    color?: string;
-    group?: string;
-    HP?: number;
-    id?: string;
-    [key: string]: unknown;
-}
-export interface SampleInfo {
-    isPhased: boolean;
-    maxPloidy: number;
-}

package/dist/shared/types.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/shared/util.d.ts

@@ -1,2 +0,0 @@
-export declare function fillRectCtx(x: number, y: number, width: number, height: number, ctx: CanvasRenderingContext2D, color?: string): void;
-export declare function colorify(n: number): string;

package/dist/shared/util.js

@@ -1,21 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.fillRectCtx = fillRectCtx;
-exports.colorify = colorify;
-function fillRectCtx(x, y, width, height, ctx, color) {
-    if (width < 0) {
-        x += width;
-        width = -width;
-    }
-    if (height < 0) {
-        y += height;
-        height = -height;
-    }
-    if (color) {
-        ctx.fillStyle = color;
-    }
-    ctx.fillRect(x, y, width, height);
-}
-function colorify(n) {
-    return `hsl(${n % 255}, 50%, 50%)`;
-}

package/dist/util.js

@@ -1 +0,0 @@
-"use strict";

package/esm/MultiVariantBaseRenderer.d.ts

@@ -1,46 +0,0 @@
-import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-import type { Source } from './shared/types';
-import type { RenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-import type { Feature } from '@jbrowse/core/util';
-import type { ThemeOptions } from '@mui/material';
-export interface RenderArgs extends RenderArgsDeserialized {
-    bpPerPx: number;
-    height: number;
-    highResolutionScaling: number;
-    themeOptions: ThemeOptions;
-}
-export interface RenderArgsDeserializedWithFeatures extends RenderArgs {
-    features: Map<string, Feature>;
-}
-export interface MultiRenderArgsDeserialized extends RenderArgsDeserializedWithFeatures {
-    sources: Source[];
-}
-export default abstract class MultiVariantBaseRenderer extends FeatureRendererType {
-    supportsSVG: boolean;
-    render(renderProps: RenderArgs): Promise<{
-        features: Map<string, Feature>;
-        height: number;
-        width: number;
-        containsNoTransferables: boolean;
-        canvasRecordedData: Record<string, unknown>;
-        reactElement?: React.ReactElement;
-        html?: string;
-    } | {
-        features: Map<string, Feature>;
-        height: number;
-        width: number;
-        containsNoTransferables: boolean;
-        imageData: any;
-        reactElement?: React.ReactElement;
-        html?: string;
-    } | {
-        features: Map<string, Feature>;
-        height: number;
-        width: number;
-        containsNoTransferables: boolean;
-        reactElement: React.ReactElement;
-        html?: string;
-    }>;
-    abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): Promise<Record<string, unknown> | undefined>;
-}
-export type { RenderArgsSerialized, RenderResults, ResultsDeserialized, ResultsSerialized, } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';

package/esm/MultiVariantBaseRenderer.js

@@ -1,33 +0,0 @@
-import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-import { renderToAbstractCanvas } from '@jbrowse/core/util';
-export default class MultiVariantBaseRenderer extends FeatureRendererType {
-    constructor() {
-        super(...arguments);
-        this.supportsSVG = true;
-    }
-    async render(renderProps) {
-        const features = await this.getFeatures(renderProps);
-        const { height, regions, bpPerPx } = renderProps;
-        const region = regions[0];
-        const width = (region.end - region.start) / bpPerPx;
-        const rest = await renderToAbstractCanvas(width, height, renderProps, ctx => this.draw(ctx, {
-            ...renderProps,
-            features,
-        }));
-        const results = await super.render({
-            ...renderProps,
-            ...rest,
-            features,
-            height,
-            width,
-        });
-        return {
-            ...results,
-            ...rest,
-            features: new Map(),
-            height,
-            width,
-            containsNoTransferables: true,
-        };
-    }
-}

package/esm/VariantFeatureWidget/Checkbox2.d.ts

@@ -1,6 +0,0 @@
-export default function Checkbox2({ checked, disabled, label, onChange, }: {
-    checked: boolean;
-    disabled?: boolean;
-    label: string;
-    onChange: (event: React.ChangeEvent<HTMLInputElement>) => void;
-}): import("react/jsx-runtime").JSX.Element;

package/esm/VariantFeatureWidget/Checkbox2.js

@@ -1,5 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-import { Checkbox, FormControlLabel, Typography } from '@mui/material';
-export default function Checkbox2({ checked, disabled, label, onChange, }) {
-    return (_jsx(FormControlLabel, { disabled: disabled, control: _jsx(Checkbox, { checked: checked, onChange: onChange }), label: _jsx(Typography, { variant: "body2", children: label }) }));
-}

package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.d.ts

@@ -1 +0,0 @@
-export { BreakendMultiLevelOptionDialog as default } from '@jbrowse/sv-core';

package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendMultiLevelOptionDialog.js

@@ -1 +0,0 @@
-export { BreakendMultiLevelOptionDialog as default } from '@jbrowse/sv-core';

package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.d.ts

@@ -1 +0,0 @@
-export { BreakendSingleLevelOptionDialog as default } from '@jbrowse/sv-core';

package/esm/VariantFeatureWidget/LaunchBreakendPanel/BreakendSingleLevelOptionDialog.js

@@ -1 +0,0 @@
-export { BreakendSingleLevelOptionDialog as default } from '@jbrowse/sv-core';

package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.d.ts

@@ -1,4 +0,0 @@
-import type { VariantFeatureWidgetModel } from '../stateModelFactory';
-export default function LaunchBreakendWidgetArea({ model, }: {
-    model: VariantFeatureWidgetModel;
-}): import("react/jsx-runtime").JSX.Element;

package/esm/VariantFeatureWidget/LaunchBreakendPanel/LaunchBreakendWidgetArea.js

@@ -1,24 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-import { Suspense, lazy } from 'react';
-import { parseBreakend } from '@gmod/vcf';
-const LaunchBreakendPanel = lazy(() => import('./LaunchBreakendPanel'));
-export default function LaunchBreakendWidgetArea({ model, }) {
-    const { featureData } = model;
-    const feat = JSON.parse(JSON.stringify(featureData));
-    const { type = '' } = feat;
-    return (_jsx(Suspense, { fallback: null, children: type === 'breakend' ? (_jsx(LaunchBreakendPanel, { feature: feat, locStrings: feat.ALT.map((alt) => { var _a; return ((_a = parseBreakend(alt)) === null || _a === void 0 ? void 0 : _a.MatePosition) || ''; }), model: model })) : type === 'translocation' ? (_jsx(LaunchBreakendPanel, { feature: feat, model: model, locStrings: [`${feat.INFO.CHR2[0]}:${feat.INFO.END}`] })) : type === 'paired_feature' ? (_jsx(LaunchBreakendPanel, { feature: feat, model: model, locStrings: [`${feat.mate.refName}:${feat.mate.start}`] })) : type.includes('inversion') ||
-            type.includes('deletion') ||
-            type.includes('duplication') ||
-            type.includes('cnv') ||
-            type.includes('sv') ? (_jsx(LaunchBreakendPanel, { feature: {
-                uniqueId: 'random',
-                refName: feat.refName,
-                start: feat.start,
-                end: feat.start + 1,
-                mate: {
-                    refName: feat.refName,
-                    start: feat.end,
-                    end: feat.end + 1,
-                },
-            }, model: model, locStrings: [`${feat.refName}:${feat.end}`] })) : null }));
-}

package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.d.ts

@@ -1 +0,0 @@
-export { default } from './LaunchBreakendPanel';

package/esm/VariantFeatureWidget/LaunchBreakendPanel/index.js

@@ -1 +0,0 @@
-export { default } from './LaunchBreakendPanel';

package/esm/VariantFeatureWidget/VariantSampleGrid/index.d.ts

@@ -1 +0,0 @@
-export { default } from './VariantSampleGrid';

package/esm/VariantFeatureWidget/VariantSampleGrid/index.js

@@ -1 +0,0 @@
-export { default } from './VariantSampleGrid';

package/esm/VariantFeatureWidget/VariantSampleGrid/util.d.ts

@@ -1 +0,0 @@
-export declare function areSetsEqual<T>(set1: Set<T>, set2: Set<T>): boolean;

package/esm/VariantFeatureWidget/VariantSampleGrid/util.js

@@ -1,11 +0,0 @@
-export function areSetsEqual(set1, set2) {
-    if (set1.size !== set2.size) {
-        return false;
-    }
-    for (const item of set1) {
-        if (!set2.has(item)) {
-            return false;
-        }
-    }
-    return true;
-}

package/esm/extensionPoints.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function ExtensionPointsF(pluginManager: PluginManager): void;

package/esm/getMultiVariantFeaturesAutorun.d.ts

@@ -1,18 +0,0 @@
-import type { SampleInfo, Source } from './shared/types';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { Feature } from '@jbrowse/core/util';
-export declare function getMultiVariantFeaturesAutorun(self: {
-    configuration: AnyConfigurationModel;
-    adapterConfig: AnyConfigurationModel;
-    sources?: Source[];
-    minorAlleleFrequencyFilter: number;
-    lengthCutoffFilter: number;
-    statsReadyAndRegionNotTooLarge: boolean;
-    adapterProps: () => Record<string, unknown>;
-    setError: (error: unknown) => void;
-    setFeatures: (f: Feature[]) => void;
-    setMessage: (str: string) => void;
-    setHasPhased: (arg: boolean) => void;
-    setSampleInfo: (arg: Record<string, SampleInfo>) => void;
-    setSimplifiedFeaturesLoading: (arg: string) => void;
-}): void;

package/esm/shared/SharedVariantMixin.d.ts

@@ -1,325 +0,0 @@
-import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-import type { Feature } from '@jbrowse/core/util';
-export default function SharedVariantMixin(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        stopToken: string | undefined;
-        filled: boolean;
-        reactElement: React.ReactElement | undefined;
-        features: Map<string, Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: {
-                error?: unknown;
-                reload: () => void;
-                message: React.ReactNode;
-                filled?: boolean;
-                status?: string;
-                reactElement?: React.ReactElement;
-            };
-        }) => import("react/jsx-runtime").JSX.Element | undefined;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void;
-        setLoading(newStopToken: string): void;
-        setMessage(messageText: string): void;
-        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-        jexlFilters: {
-            type: string;
-            description: string;
-            defaultValue: never[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-} & {
-    selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    configuration: AnyConfigurationSchemaType;
-}, {
-    rendererTypeName: string;
-    error: unknown;
-    message: string | undefined;
-} & {
-    readonly RenderingComponent: React.FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: () => void;
-        blockState?: Record<string, any>;
-    }>;
-    readonly DisplayBlurb: React.FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }> | null;
-    readonly adapterConfig: any;
-    readonly parentTrack: any;
-    renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: undefined | React.FC<any>;
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): null;
-} & {
-    setMessage(arg?: string): void;
-    setError(error?: unknown): void;
-    setRpcDriverName(rpcDriverName: string): void;
-    reload(): void;
-} & {
-    scrollTop: number;
-} & {
-    readonly height: number;
-} & {
-    setScrollTop(scrollTop: number): void;
-    setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
-} & {
-    featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
-    currStatsBpPerPx: number;
-} & {
-    readonly currentBytesRequested: number;
-    readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
-    readonly featureDensityStatsReady: boolean;
-    readonly maxAllowableBytes: number;
-} & {
-    afterAttach(): void;
-} & {
-    setCurrStatsBpPerPx(n: number): void;
-    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-    getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
-    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-    clearFeatureDensityStats(): void;
-} & {
-    readonly regionTooLarge: boolean;
-    readonly regionTooLargeReason: string;
-} & {
-    readonly statsReadyAndRegionNotTooLarge: boolean;
-    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
-} & {
-    mouseoverExtraInformation: string | undefined;
-    featureIdUnderMouse: undefined | string;
-    contextMenuFeature: undefined | Feature;
-} & {
-    readonly DisplayMessageComponent: undefined | React.FC<any>;
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
-    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-} & {
-    readonly renderDelay: number;
-    readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
-    readonly selectedFeatureId: string | undefined;
-    copyInfoToClipboard(feature: Feature): void;
-} & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
-    readonly featureUnderMouse: Feature | undefined;
-    readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
-        label?: string;
-        description?: string;
-        refName: string;
-    }]>;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-    getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
-        label?: string;
-        description?: string;
-        refName: string;
-    }]) | undefined;
-    searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
-        label?: string;
-        description?: string;
-        refName: string;
-    }]) | undefined;
-} & {
-    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-    deleteBlock(key: string): void;
-    selectFeature(feature: Feature): void;
-    navToFeature(feature: Feature): void;
-    clearFeatureSelection(): void;
-    setFeatureIdUnderMouse(feature?: string): void;
-    setContextMenuFeature(feature?: Feature): void;
-    setMouseoverExtraInformation(extra?: string): void;
-} & {
-    reload(): Promise<void>;
-} & {
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any;
-} & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
-    afterAttach(): void;
-} & {
-    message: undefined | string;
-} & {
-    selectFeature(feature: Feature): void;
-    setRendererType(val: string): void;
-} & {
-    readonly adapterTypeName: any;
-    readonly rendererTypeNameSimple: any;
-    readonly filters: undefined;
-} & {
-    readonly adapterCapabilities: string[];
-} & {
-    reload(): Promise<void>;
-}, {
-    type: string;
-} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        stopToken: string | undefined;
-        filled: boolean;
-        reactElement: React.ReactElement | undefined;
-        features: Map<string, Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: {
-                error?: unknown;
-                reload: () => void;
-                message: React.ReactNode;
-                filled?: boolean;
-                status?: string;
-                reactElement?: React.ReactElement;
-            };
-        }) => import("react/jsx-runtime").JSX.Element | undefined;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void;
-        setLoading(newStopToken: string): void;
-        setMessage(messageText: string): void;
-        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-        jexlFilters: {
-            type: string;
-            description: string;
-            defaultValue: never[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
-    id: string;
-    type: string;
-    configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    rpcDriverName: string | undefined;
-    heightPreConfig: number | undefined;
-    userBpPerPxLimit: number | undefined;
-    userByteSizeLimit: number | undefined;
-} & import("mobx-state-tree")._NotCustomized>;

package/esm/shared/SharedVariantMixin.js

@@ -1,55 +0,0 @@
-import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
-import { getEnv, getSession, isSelectionContainer } from '@jbrowse/core/util';
-import { BaseLinearDisplay } from '@jbrowse/plugin-linear-genome-view';
-import { types } from 'mobx-state-tree';
-export default function SharedVariantMixin(configSchema) {
-    return types
-        .compose(BaseLinearDisplay, types.model({
-        selectedRendering: types.optional(types.string, ''),
-        summaryScoreMode: types.maybe(types.string),
-        rendererTypeNameState: types.maybe(types.string),
-        configuration: ConfigurationReference(configSchema),
-    }))
-        .volatile(() => ({
-        message: undefined,
-    }))
-        .actions(self => ({
-        selectFeature(feature) {
-            const session = getSession(self);
-            if (isSelectionContainer(session)) {
-                session.setSelection(feature);
-            }
-        },
-        setRendererType(val) {
-            self.rendererTypeNameState = val;
-        },
-    }))
-        .views(self => ({
-        get adapterTypeName() {
-            return self.adapterConfig.type;
-        },
-        get rendererTypeNameSimple() {
-            var _a;
-            return (_a = self.rendererTypeNameState) !== null && _a !== void 0 ? _a : getConf(self, 'defaultRendering');
-        },
-        get filters() {
-            return undefined;
-        },
-    }))
-        .views(self => ({
-        get adapterCapabilities() {
-            const type = self.adapterTypeName;
-            const { pluginManager } = getEnv(self);
-            return pluginManager.getAdapterType(type).adapterCapabilities;
-        },
-    }))
-        .actions(self => {
-        const { reload: superReload } = self;
-        return {
-            async reload() {
-                self.setError();
-                superReload();
-            },
-        };
-    });
-}