@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.2

package/dist/LinearGenomeView/components/{OverviewScaleBar.js → OverviewScalebar.js}

@@ -8,49 +8,50 @@ const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
+// core
 const Base1DViewModel_1 = __importDefault(require("@jbrowse/core/util/Base1DViewModel"));
 const util_1 = require("@jbrowse/core/util");
 const blockTypes_1 = require("@jbrowse/core/util/blockTypes");
 // locals
 const __1 = require("..");
 const util_2 = require("../util");
-const OverviewRubberBand_1 = __importDefault(require("./OverviewRubberBand"));
+const OverviewRubberband_1 = __importDefault(require("./OverviewRubberband"));
 const wholeSeqSpacer = 2;
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    scaleBar: {
+    scalebar: {
         height: __1.HEADER_OVERVIEW_HEIGHT,
     },
-    scaleBarBorder: {
+    scalebarBorder: {
         border: '1px solid',
     },
-    scaleBarContig: {
+    scalebarContig: {
         backgroundColor: theme.palette.background.default,
         position: 'absolute',
         top: 0,
         height: __1.HEADER_OVERVIEW_HEIGHT,
     },
-    scaleBarContigForward: {
+    scalebarContigForward: {
         backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M-.1 0L6 4.5L-.1 9' fill='none' stroke='%23ddd'/%3E%3C/svg%3E")`,
         backgroundRepeat: 'repeat',
     },
-    scaleBarContigReverse: {
+    scalebarContigReverse: {
         backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M6 0L0 4.5L6 9' fill='none' stroke='%23ddd'/%3E%3C/svg%3E")`,
         backgroundRepeat: 'repeat',
     },
-    scaleBarRefName: {
+    scalebarRefName: {
         position: 'absolute',
         fontWeight: 'bold',
         pointerEvents: 'none',
         zIndex: 100,
     },
-    scaleBarLabel: {
+    scalebarLabel: {
         height: __1.HEADER_OVERVIEW_HEIGHT,
         position: 'absolute',
         display: 'flex',
         justifyContent: 'center',
         pointerEvents: 'none',
     },
-    scaleBarVisibleRegion: {
+    scalebarVisibleRegion: {
         position: 'absolute',
         height: __1.HEADER_OVERVIEW_HEIGHT,
         pointerEvents: 'none',
@@ -210,18 +211,18 @@ const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview,
         react_1.default.createElement(material_1.Typography, { style: {
                 left: block.offsetPx + 3,
                 color: canDisplayCytobands ? 'black' : refNameColor,
-            }, className: classes.scaleBarRefName }, refName),
-        react_1.default.createElement("div", { className: cx(classes.scaleBarContig, canDisplayCytobands
+            }, className: classes.scalebarRefName }, refName),
+        react_1.default.createElement("div", { className: cx(classes.scalebarContig, canDisplayCytobands
                 ? undefined
                 : reversed
-                    ? classes.scaleBarContigReverse
-                    : classes.scaleBarContigForward, !canDisplayCytobands ? classes.scaleBarBorder : undefined), style: {
+                    ? classes.scalebarContigReverse
+                    : classes.scalebarContigForward, !canDisplayCytobands ? classes.scalebarBorder : undefined), style: {
                 left: block.offsetPx + cytobandOffset,
                 width: block.widthPx,
                 borderColor: refNameColor,
             } },
             !canDisplayCytobands
-                ? tickLabels.map((tickLabel, labelIdx) => (react_1.default.createElement(material_1.Typography, { key: `${JSON.stringify(block)}-${tickLabel}-${labelIdx}`, className: classes.scaleBarLabel, variant: "body2", style: {
+                ? tickLabels.map((tickLabel, labelIdx) => (react_1.default.createElement(material_1.Typography, { key: `${JSON.stringify(block)}-${tickLabel}-${labelIdx}`, className: classes.scalebarLabel, variant: "body2", style: {
                         left: ((labelIdx + 1) * majorPitch) / scale,
                         pointerEvents: 'none',
                         color: refNameColor,
@@ -230,14 +231,14 @@ const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview,
             canDisplayCytobands ? (react_1.default.createElement("svg", { style: { width: '100%' } },
                 react_1.default.createElement(Cytobands, { overview: overview, assembly: assembly, block: block }))) : null)));
 });
-const ScaleBar = (0, mobx_react_1.observer)(({ model, scale, overview, }) => {
+const Scalebar = (0, mobx_react_1.observer)(({ model, scale, overview, }) => {
     const { classes } = useStyles();
     const theme = (0, material_1.useTheme)();
     const { dynamicBlocks, showCytobands, cytobandOffset } = model;
     const visibleRegions = dynamicBlocks.contentBlocks;
     const overviewVisibleRegions = overview.dynamicBlocks;
     const { tertiary, primary } = theme.palette;
-    const scaleBarColor = tertiary ? tertiary.light : primary.light;
+    const scalebarColor = tertiary ? tertiary.light : primary.light;
     if (!visibleRegions.length) {
         return null;
     }
@@ -251,17 +252,17 @@ const ScaleBar = (0, mobx_react_1.observer)(({ model, scale, overview, }) => {
         ...last,
         coord: last.reversed ? last.start : last.end,
     }) || 0;
-    const color = showCytobands ? '#f00' : scaleBarColor;
+    const color = showCytobands ? '#f00' : scalebarColor;
     const transparency = showCytobands ? 0.1 : 0.3;
-    return (react_1.default.createElement("div", { className: classes.scaleBar },
-        react_1.default.createElement("div", { className: classes.scaleBarVisibleRegion, style: {
+    return (react_1.default.createElement("div", { className: classes.scalebar },
+        react_1.default.createElement("div", { className: classes.scalebarVisibleRegion, style: {
                 width: lastOverviewPx - firstOverviewPx,
                 left: firstOverviewPx + cytobandOffset,
                 background: (0, material_1.alpha)(color, transparency),
                 borderColor: color,
             } }),
         overviewVisibleRegions.map((block, idx) => {
-            return !(block instanceof blockTypes_1.ContentBlock) ? (react_1.default.createElement("div", { key: `${JSON.stringify(block)}-${idx}`, className: classes.scaleBarContig, style: {
+            return !(block instanceof blockTypes_1.ContentBlock) ? (react_1.default.createElement("div", { key: `${JSON.stringify(block)}-${idx}`, className: classes.scalebarContig, style: {
                     width: block.widthPx,
                     left: block.offsetPx,
                     backgroundColor: '#999',
@@ -269,7 +270,7 @@ const ScaleBar = (0, mobx_react_1.observer)(({ model, scale, overview, }) => {
                 } })) : (react_1.default.createElement(OverviewBox, { scale: scale, block: block, model: model, overview: overview, key: `${JSON.stringify(block)}-${idx}` }));
         })));
 });
-function OverviewScaleBar({ model, children, }) {
+function OverviewScalebar({ model, children, }) {
     const { classes } = useStyles();
     const { totalBp, width, cytobandOffset, displayedRegions } = model;
     const overview = Base1DViewModel_1.default.create({
@@ -282,11 +283,11 @@ function OverviewScaleBar({ model, children, }) {
     overview.showAllRegions();
     const scale = totalBp / (modWidth - (displayedRegions.length - 1) * wholeSeqSpacer);
     return (react_1.default.createElement("div", null,
-        react_1.default.createElement(OverviewRubberBand_1.default, { model: model, overview: overview, ControlComponent: react_1.default.createElement(ScaleBar, { model: model, overview: overview, scale: scale }) }),
+        react_1.default.createElement(OverviewRubberband_1.default, { model: model, overview: overview, ControlComponent: react_1.default.createElement(Scalebar, { model: model, overview: overview, scale: scale }) }),
         react_1.default.createElement("div", { className: classes.overview },
             react_1.default.createElement("svg", { height: __1.HEADER_BAR_HEIGHT, className: classes.overviewSvg },
                 react_1.default.createElement(Polygon, { model: model, overview: overview })),
             children)));
 }
-exports.default = (0, mobx_react_1.observer)(OverviewScaleBar);
-//# sourceMappingURL=OverviewScaleBar.js.map
+exports.default = (0, mobx_react_1.observer)(OverviewScalebar);
+//# sourceMappingURL=OverviewScalebar.js.map

package/dist/LinearGenomeView/components/OverviewScalebar.js.map

@@ -0,0 +1 @@
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package/dist/LinearGenomeView/components/RefNameAutocomplete.js

@@ -117,7 +117,7 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
     const inputBoxVal = coarseVisibleLocStrings || value || '';
     // heuristic, text width + icon width
-    // + 45 accomodates help icon and search icon
+    // + 45 accommodates help icon and search icon
     const width = Math.min(Math.max((0, util_1.measureText)(inputBoxVal, 16) + 45, minWidth), 550);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked

package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/{RubberBand.d.ts → Rubberband.d.ts}

@@ -1,9 +1,9 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
-declare function RubberBand({ model, ControlComponent, }: {
+type LGV = LinearGenomeViewModel;
+declare function Rubberband({ model, ControlComponent, }: {
     model: LGV;
     ControlComponent?: React.ReactElement;
 }): JSX.Element;
-declare const _default: typeof RubberBand;
+declare const _default: typeof Rubberband;
 export default _default;

package/dist/LinearGenomeView/components/Rubberband.js

@@ -0,0 +1,57 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const mobx_react_1 = require("mobx-react");
+const mui_1 = require("tss-react/mui");
+const ui_1 = require("@jbrowse/core/ui");
+// locals
+const VerticalGuide_1 = __importDefault(require("./VerticalGuide"));
+const RubberbandSpan_1 = __importDefault(require("./RubberbandSpan"));
+const hooks_1 = require("./hooks");
+const useStyles = (0, mui_1.makeStyles)()({
+    rubberbandControl: {
+        cursor: 'crosshair',
+        width: '100%',
+        minHeight: 8,
+    },
+});
+function Rubberband({ model, ControlComponent = react_1.default.createElement("div", null), }) {
+    const ref = (0, react_1.useRef)(null);
+    const { classes } = useStyles();
+    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown, mouseOut, } = (0, hooks_1.useRangeSelect)(ref, model);
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        guideX !== undefined ? (react_1.default.createElement(VerticalGuide_1.default, { model: model, coordX: guideX })) : rubberbandOn ? (react_1.default.createElement(RubberbandSpan_1.default, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null,
+        anchorPosition ? (react_1.default.createElement(ui_1.Menu, { anchorReference: "anchorPosition", anchorPosition: {
+                left: anchorPosition.clientX,
+                top: anchorPosition.clientY,
+            }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
+        react_1.default.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: ref, onMouseDown: mouseDown, onMouseMove: mouseMove, onMouseOut: mouseOut }, ControlComponent)));
+}
+exports.default = (0, mobx_react_1.observer)(Rubberband);
+//# sourceMappingURL=Rubberband.js.map

package/dist/LinearGenomeView/components/Rubberband.js.map

@@ -0,0 +1 @@
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package/dist/LinearGenomeView/components/RubberbandSpan.d.ts

@@ -0,0 +1,14 @@
+/// <reference types="react" />
+interface Offset {
+    coord: number;
+    refName?: string;
+    oob?: boolean;
+}
+declare function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }: {
+    leftBpOffset: Offset;
+    rightBpOffset: Offset;
+    numOfBpSelected?: number;
+    left: number;
+    width: number;
+}): JSX.Element;
+export default RubberbandSpan;

package/dist/LinearGenomeView/components/RubberbandSpan.js

@@ -0,0 +1,90 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const mui_1 = require("tss-react/mui");
+const material_1 = require("@mui/material");
+const util_1 = require("@jbrowse/core/util");
+const useStyles = (0, mui_1.makeStyles)()(theme => {
+    const { primary, tertiary } = theme.palette;
+    const background = tertiary
+        ? (0, material_1.alpha)(tertiary.main, 0.7)
+        : (0, material_1.alpha)(primary.main, 0.7);
+    return {
+        rubberband: {
+            height: '100%',
+            background,
+            position: 'absolute',
+            zIndex: 10,
+            textAlign: 'center',
+            overflow: 'hidden',
+        },
+        rubberbandControl: {
+            cursor: 'crosshair',
+            width: '100%',
+            minHeight: 8,
+        },
+        rubberbandText: {
+            color: tertiary ? tertiary.contrastText : primary.contrastText,
+        },
+        popover: {
+            mouseEvents: 'none',
+            cursor: 'crosshair',
+        },
+        paper: {
+            paddingLeft: theme.spacing(1),
+            paddingRight: theme.spacing(1),
+        },
+    };
+});
+function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }) {
+    const ref = (0, react_1.useRef)(null);
+    const { classes } = useStyles();
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        ref.current ? (react_1.default.createElement(react_1.default.Fragment, null,
+            react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'left',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'right',
+                }, keepMounted: true, disableRestoreFocus: true },
+                react_1.default.createElement(material_1.Typography, null, (0, util_1.stringify)(leftBpOffset))),
+            react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: {
+                    paper: classes.paper,
+                }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'right',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'left',
+                }, keepMounted: true, disableRestoreFocus: true },
+                react_1.default.createElement(material_1.Typography, null, (0, util_1.stringify)(rightBpOffset))))) : null,
+        react_1.default.createElement("div", { ref: ref, className: classes.rubberband, style: { left, width } }, numOfBpSelected ? (react_1.default.createElement(material_1.Typography, { variant: "h6", className: classes.rubberbandText },
+            (0, util_1.toLocale)(numOfBpSelected),
+            " bp")) : null)));
+}
+exports.default = RubberbandSpan;
+//# sourceMappingURL=RubberbandSpan.js.map

package/dist/LinearGenomeView/components/RubberbandSpan.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"RubberbandSpan.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberbandSpan.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAqC;AACrC,uCAA0C;AAE1C,4CAA0D;AAC1D,6CAAwD;AAExD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,IAAA,gBAAK,EAAC,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC;QAC3B,CAAC,CAAC,IAAA,gBAAK,EAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;IAC5B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,SAAS,cAAc,CAAC,EACtB,YAAY,EACZ,aAAa,EACb,eAAe,EACf,IAAI,EACJ,KAAK,GAON;IACC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL;QACG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CACb;YACE,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE;oBACZ,QAAQ,EAAE,KAAK;oBACf,UAAU,EAAE,MAAM;iBACnB,EACD,eAAe,EAAE;oBACf,QAAQ,EAAE,QAAQ;oBAClB,UAAU,EAAE,OAAO;iBACpB,EACD,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,YAAY,CAAC,CAAc,CAC1C;YACV,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE;oBACP,KAAK,EAAE,OAAO,CAAC,KAAK;iBACrB,EACD,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE;oBACZ,QAAQ,EAAE,KAAK;oBACf,UAAU,EAAE,OAAO;iBACpB,EACD,eAAe,EAAE;oBACf,QAAQ,EAAE,QAAQ;oBAClB,UAAU,EAAE,MAAM;iBACnB,EACD,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,aAAa,CAAC,CAAc,CAC3C,CACT,CACJ,CAAC,CAAC,CAAC,IAAI;QACR,uCAAK,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,IACjE,eAAe,CAAC,CAAC,CAAC,CACjB,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,EAAC,SAAS,EAAE,OAAO,CAAC,cAAc;YACvD,IAAA,eAAQ,EAAC,eAAe,CAAC;kBACf,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACL,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,cAAc,CAAA"}

package/dist/LinearGenomeView/components/{ScaleBar.d.ts → Scalebar.d.ts}

@@ -1,10 +1,10 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
-interface ScaleBarProps {
+type LGV = LinearGenomeViewModel;
+interface ScalebarProps {
     model: LGV;
     style?: React.CSSProperties;
     className?: string;
 }
-declare const _default: React.ForwardRefExoticComponent<ScaleBarProps & React.RefAttributes<HTMLDivElement>>;
+declare const _default: React.ForwardRefExoticComponent<ScalebarProps & React.RefAttributes<HTMLDivElement>>;
 export default _default;

package/dist/LinearGenomeView/components/{ScaleBar.js → Scalebar.js}

@@ -12,15 +12,15 @@ const Block_1 = require("../../BaseLinearDisplay/components/Block");
 const util_1 = require("../util");
 const util_2 = require("@jbrowse/core/util");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    scaleBarContainer: {
+    scalebarContainer: {
         overflow: 'hidden',
         position: 'relative',
     },
-    scaleBarZoomContainer: {
+    scalebarZoomContainer: {
         position: 'relative',
         zIndex: 1,
     },
-    scaleBar: {
+    scalebar: {
         position: 'absolute',
         display: 'flex',
         pointerEvents: 'none',
@@ -70,7 +70,7 @@ const RenderedRefNameLabels = (0, mobx_react_1.observer)(({ model }) => {
             }, className: classes.refLabel, "data-testid": `refLabel-${block.refName}` }, block.refName)) : null;
     })));
 });
-const RenderedScaleBarLabels = (0, mobx_react_1.observer)(({ model }) => {
+const RenderedScalebarLabels = (0, mobx_react_1.observer)(({ model }) => {
     const { classes } = useStyles();
     const { bpPerPx, staticBlocks } = model;
     return (react_1.default.createElement(react_1.default.Fragment, null, staticBlocks.map((block, index) => {
@@ -95,23 +95,23 @@ const RenderedScaleBarLabels = (0, mobx_react_1.observer)(({ model }) => {
         return null;
     })));
 });
-const ScaleBar = react_1.default.forwardRef(({ model, style, className, ...other }, ref) => {
+const Scalebar = react_1.default.forwardRef(({ model, style, className, ...other }, ref) => {
     const { classes, cx } = useStyles();
     const offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
     return (react_1.default.createElement(material_1.Paper, { "data-resizer": "true" // used to avoid click-and-drag scrolls on trackscontainer
-        , className: cx(classes.scaleBarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
-        react_1.default.createElement("div", { className: classes.scaleBarZoomContainer, style: {
+        , className: cx(classes.scalebarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
+        react_1.default.createElement("div", { className: classes.scalebarZoomContainer, style: {
                 transform: model.scaleFactor !== 1
                     ? `scaleX(${model.scaleFactor})`
                     : undefined,
             } },
-            react_1.default.createElement("div", { className: classes.scaleBar, style: {
+            react_1.default.createElement("div", { className: classes.scalebar, style: {
                     left: offsetLeft - 1,
                     width: model.staticBlocks.totalWidthPx,
                     ...style,
                 } },
-                react_1.default.createElement(RenderedScaleBarLabels, { model: model }))),
+                react_1.default.createElement(RenderedScalebarLabels, { model: model }))),
         react_1.default.createElement(RenderedRefNameLabels, { model: model })));
 });
-exports.default = (0, mobx_react_1.observer)(ScaleBar);
-//# sourceMappingURL=ScaleBar.js.map
+exports.default = (0, mobx_react_1.observer)(Scalebar);
+//# sourceMappingURL=Scalebar.js.map

package/dist/LinearGenomeView/components/{ScaleBar.js.map → Scalebar.js.map}

@@ -1 +1 @@
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+{"version":3,"file":"Scalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Scalebar.tsx"],"names":[],"mappings":";;;;;AAAA,4CAAiD;AACjD,uCAA0C;AAC1C,8DAIsC;AACtC,2CAAqC;AACrC,kDAAyB;AAEzB,oEAIiD;AACjD,kCAAmC;AACnC,6CAAsD;AAItD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,iBAAiB,EAAE;QACjB,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE,UAAU;KACrB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,MAAM;KACtB;IACD,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;QAChB,MAAM,EAAE,CAAC;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;QAC1C,UAAU,EAAE,QAAQ;QACpB,aAAa,EAAE,MAAM;KACtB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,CAAC;QACR,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE,UAAU;QACpB,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,MAAM;QACX,UAAU,EAAE,MAAM;QAClB,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,qBAAqB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACnE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,iEAAiE;IACjE,IAAI,aAAa,GAAG,CAAC,CAAA;IACrB,KAAK,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,CAAC,EAAE,EAAE;QACtC,IAAI,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE;YACvC,aAAa,GAAG,CAAC,CAAA;SAClB;IACH,CAAC,CAAC,CAAA;IACF,OAAO,CACL,8DACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,OAAO,KAAK,YAAY,yBAAY;YAClC,CAAC,KAAK,CAAC,0BAA0B,IAAI,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAChE,8BAAC,qBAAU,IACT,GAAG,EAAE,YAAY,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EACrC,KAAK,EAAE;gBACL,IAAI,EACF,KAAK,KAAK,aAAa;oBACrB,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;oBAC9B,CAAC,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACzC,WAAW,EAAE,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;aAC7C,EACD,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACd,YAAY,KAAK,CAAC,OAAO,EAAE,IAEvC,KAAK,CAAC,OAAO,CACH,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;IACV,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,sBAAsB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAEvC,OAAO,CACL,8DACG,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACjC,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACpD,IAAI,KAAK,YAAY,yBAAY,EAAE;YACjC,MAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,CAAA;YAEzD,OAAO,CACL,8BAAC,oBAAqB,IAAC,GAAG,EAAE,GAAG,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IACxD,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,IAAI,IAAI,CAAC,IAAI,KAAK,OAAO,EAAE;oBACzB,MAAM,CAAC,GACL,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;oBAC5D,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,GAAG,CAAC,CAAA;oBAChC,OAAO,CACL,uCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,IAEjB,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,IAC1C,IAAA,wBAAiB,EAAC,UAAU,EAAE,OAAO,CAAC,CAC5B,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;iBACF;gBACD,OAAO,IAAI,CAAA;YACb,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,wBAAW,EAAE;YAChC,OAAO,8BAAC,mBAAoB,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,GAAI,CAAA;SAC1D;QACD,IAAI,KAAK,YAAY,oCAAuB,EAAE;YAC5C,OAAO,CACL,8BAAC,+BAAgC,IAC/B,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,OAAO,EACd,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,MAAM,QAAQ,GAAG,eAAK,CAAC,UAAU,CAC/B,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,KAAK,EAAE,EAAE,GAAG,EAAE,EAAE;IAC7C,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IAEnC,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,8BAAC,gBAAK,oBACS,MAAM,CAAC,0DAA0D;UAC9E,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,iBAAiB,EAAE,SAAS,CAAC,EACnD,OAAO,EAAC,UAAU,EAClB,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,KACR,KAAK;QAET,uCACE,SAAS,EAAE,OAAO,CAAC,qBAAqB,EACxC,KAAK,EAAE;gBACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC;oBACrB,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG;oBAChC,CAAC,CAAC,SAAS;aAChB;YAED,uCACE,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,KAAK,EAAE;oBACL,IAAI,EAAE,UAAU,GAAG,CAAC;oBACpB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;oBACtC,GAAG,KAAK;iBACT;gBAED,8BAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF;QACN,8BAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI,CACjC,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,QAAQ,CAAC,CAAA"}

package/dist/LinearGenomeView/components/SearchBox.js

@@ -26,11 +26,11 @@ function SearchBox({ model, showHelp, }) {
     const assemblyName = assemblyNames[0];
     const assembly = assemblyManager.get(assemblyName);
     const searchScope = model.searchScope(assemblyName);
-    function navToOption(option) {
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, assemblyName);
+            await model.navToLocString(location, assemblyName);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -44,7 +44,7 @@ function SearchBox({ model, showHelp, }) {
     async function handleSelectedRegion(option) {
         try {
             if (option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
             }
             else {
                 const input = option.getLabel();
@@ -52,7 +52,7 @@ function SearchBox({ model, showHelp, }) {
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, assemblyName);
+                    await model.navToLocString(input, assemblyName);
                 }
                 else {
                     const results = await (0, util_2.fetchResults)({
@@ -67,10 +67,10 @@ function SearchBox({ model, showHelp, }) {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, assemblyName);
+                        await model.navToLocString(input, assemblyName);
                     }
                 }
             }

package/dist/LinearGenomeView/components/SearchBox.js.map

@@ -1 +1 @@
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