@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.2

package/esm/LinearGenomeView/components/{ScaleBar.js.map → Scalebar.js.map}

@@ -1 +1 @@
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+{"version":3,"file":"Scalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Scalebar.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EACL,YAAY,EACZ,WAAW,EACX,uBAAuB,GACxB,MAAM,+BAA+B,CAAA;AACtC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EACL,YAAY,IAAI,qBAAqB,EACrC,WAAW,IAAI,oBAAoB,EACnC,uBAAuB,IAAI,gCAAgC,GAC5D,MAAM,0CAA0C,CAAA;AACjD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AACnC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAItD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,iBAAiB,EAAE;QACjB,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE,UAAU;KACrB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,MAAM;KACtB;IACD,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;QAChB,MAAM,EAAE,CAAC;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;QAC1C,UAAU,EAAE,QAAQ;QACpB,aAAa,EAAE,MAAM;KACtB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,CAAC;QACR,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE,UAAU;QACpB,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,MAAM;QACX,UAAU,EAAE,MAAM;QAClB,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,qBAAqB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACnE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,iEAAiE;IACjE,IAAI,aAAa,GAAG,CAAC,CAAA;IACrB,KAAK,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,CAAC,EAAE,EAAE;QACtC,IAAI,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE;YACvC,aAAa,GAAG,CAAC,CAAA;SAClB;IACH,CAAC,CAAC,CAAA;IACF,OAAO,CACL,0CACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,OAAO,KAAK,YAAY,YAAY;YAClC,CAAC,KAAK,CAAC,0BAA0B,IAAI,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAChE,oBAAC,UAAU,IACT,GAAG,EAAE,YAAY,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EACrC,KAAK,EAAE;gBACL,IAAI,EACF,KAAK,KAAK,aAAa;oBACrB,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;oBAC9B,CAAC,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACzC,WAAW,EAAE,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;aAC7C,EACD,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACd,YAAY,KAAK,CAAC,OAAO,EAAE,IAEvC,KAAK,CAAC,OAAO,CACH,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;IACV,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,sBAAsB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAEvC,OAAO,CACL,0CACG,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACjC,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACpD,IAAI,KAAK,YAAY,YAAY,EAAE;YACjC,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,CAAA;YAEzD,OAAO,CACL,oBAAC,qBAAqB,IAAC,GAAG,EAAE,GAAG,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IACxD,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,IAAI,IAAI,CAAC,IAAI,KAAK,OAAO,EAAE;oBACzB,MAAM,CAAC,GACL,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;oBAC5D,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,GAAG,CAAC,CAAA;oBAChC,OAAO,CACL,6BACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,IAEjB,UAAU,CAAC,CAAC,CAAC,CACZ,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,IAC1C,iBAAiB,CAAC,UAAU,EAAE,OAAO,CAAC,CAC5B,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;iBACF;gBACD,OAAO,IAAI,CAAA;YACb,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,WAAW,EAAE;YAChC,OAAO,oBAAC,oBAAoB,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,GAAI,CAAA;SAC1D;QACD,IAAI,KAAK,YAAY,uBAAuB,EAAE;YAC5C,OAAO,CACL,oBAAC,gCAAgC,IAC/B,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,OAAO,EACd,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,MAAM,QAAQ,GAAG,KAAK,CAAC,UAAU,CAC/B,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,KAAK,EAAE,EAAE,GAAG,EAAE,EAAE;IAC7C,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IAEnC,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,oBAAC,KAAK,oBACS,MAAM,CAAC,0DAA0D;UAC9E,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,iBAAiB,EAAE,SAAS,CAAC,EACnD,OAAO,EAAC,UAAU,EAClB,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,KACR,KAAK;QAET,6BACE,SAAS,EAAE,OAAO,CAAC,qBAAqB,EACxC,KAAK,EAAE;gBACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC;oBACrB,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG;oBAChC,CAAC,CAAC,SAAS;aAChB;YAED,6BACE,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,KAAK,EAAE;oBACL,IAAI,EAAE,UAAU,GAAG,CAAC;oBACpB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;oBACtC,GAAG,KAAK;iBACT;gBAED,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF;QACN,oBAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI,CACjC,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,QAAQ,CAAC,CAAA"}

package/esm/LinearGenomeView/components/SearchBox.js

@@ -21,11 +21,11 @@ function SearchBox({ model, showHelp, }) {
     const assemblyName = assemblyNames[0];
     const assembly = assemblyManager.get(assemblyName);
     const searchScope = model.searchScope(assemblyName);
-    function navToOption(option) {
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, assemblyName);
+            await model.navToLocString(location, assemblyName);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -39,7 +39,7 @@ function SearchBox({ model, showHelp, }) {
     async function handleSelectedRegion(option) {
         try {
             if (option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
             }
             else {
                 const input = option.getLabel();
@@ -47,7 +47,7 @@ function SearchBox({ model, showHelp, }) {
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, assemblyName);
+                    await model.navToLocString(input, assemblyName);
                 }
                 else {
                     const results = await fetchResults({
@@ -62,10 +62,10 @@ function SearchBox({ model, showHelp, }) {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, assemblyName);
+                        await model.navToLocString(input, assemblyName);
                     }
                 }
             }

package/esm/LinearGenomeView/components/SearchBox.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/SearchResultsDialog.js

@@ -1,23 +1,10 @@
 import React from 'react';
-import { makeStyles } from 'tss-react/mui';
 import { resolveIdentifier, getRoot } from 'mobx-state-tree';
 import { getSession, getEnv } from '@jbrowse/core/util';
-import { Button, Dialog, DialogActions, DialogContent, DialogTitle, Divider, IconButton, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    dialogContent: {
-        width: '80em',
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
+import { Dialog } from '@jbrowse/core/ui';
+import { Button, DialogActions, DialogContent, Divider, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
 export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
     var _a, _b;
-    const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(session);
     const { assemblyManager } = session;
@@ -36,7 +23,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
         throw new Error(`assembly ${assemblyName} regions not loaded`);
     }
     const assemblyRegions = assembly.regions;
-    function handleClick(location) {
+    async function handleClick(location) {
         try {
             const newRegion = assemblyRegions.find(region => location === region.refName);
             if (newRegion) {
@@ -46,7 +33,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
                 model.showAllRegions();
             }
             else {
-                model.navToLocString(location, assemblyName);
+                await model.navToLocString(location, assemblyName);
             }
         }
         catch (e) {
@@ -63,14 +50,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
         }
         return '';
     }
-    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Search results",
-            handleClose ? (React.createElement(IconButton, { "data-testid": "close-resultsDialog", className: classes.closeButton, onClick: () => {
-                    handleClose();
-                }, size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results" },
         React.createElement(DialogContent, null, !((_b = model.searchResults) === null || _b === void 0 ? void 0 : _b.length) ? (React.createElement(Typography, null,
             "No results found for ",
             React.createElement("b", null, model.searchQuery))) : (React.createElement(React.Fragment, null,
@@ -90,15 +70,21 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
                         React.createElement(TableCell, { align: "right" }, result.getLocation()),
                         React.createElement(TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
                         React.createElement(TableCell, { align: "right" },
-                            React.createElement(Button, { onClick: () => {
-                                    const location = result.getLocation();
-                                    if (location) {
-                                        handleClick(location);
-                                        const resultTrackId = result.getTrackId();
-                                        if (resultTrackId) {
-                                            model.showTrack(resultTrackId);
+                            React.createElement(Button, { onClick: async () => {
+                                    try {
+                                        const location = result.getLocation();
+                                        if (location) {
+                                            await handleClick(location);
+                                            const resultTrackId = result.getTrackId();
+                                            if (resultTrackId) {
+                                                model.showTrack(resultTrackId);
+                                            }
                                         }
                                     }
+                                    catch (e) {
+                                        console.error(e);
+                                        session.notify(`${e}`, 'error');
+                                    }
                                     handleClose();
                                 }, color: "primary", variant: "contained" }, "Go"))))))))))),
         React.createElement(Divider, null),

package/esm/LinearGenomeView/components/SearchResultsDialog.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/SequenceSearchDialog.js

@@ -1,22 +1,15 @@
 import React, { useState } from 'react';
-import { Button, Checkbox, Dialog, DialogActions, DialogContent, DialogTitle, Divider, FormGroup, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
+import { Button, Checkbox, DialogActions, DialogContent, FormGroup, FormControlLabel, TextField, Typography, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 import { getSnapshot } from 'mobx-state-tree';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getSession } from '@jbrowse/core/util';
-// icons
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
+const useStyles = makeStyles()({
     dialogContent: {
         width: '40em',
     },
-}));
+});
 function SequenceDialog({ model, handleClose, }) {
     const { classes } = useStyles();
     const [value, setValue] = useState('');
@@ -30,12 +23,7 @@ function SequenceDialog({ model, handleClose, }) {
     catch (e) {
         error = e;
     }
-    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Sequence search",
-            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Sequence search" },
         React.createElement(DialogContent, { className: classes.dialogContent },
             React.createElement(Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
             React.createElement(TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),

package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TrackContainer.d.ts

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function TrackContainer({ model, track, }: {
     model: LGV;
     track: BaseTrackModel;

package/esm/LinearGenomeView/components/TrackContainer.js

@@ -3,8 +3,9 @@ import { Paper } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { isAlive } from 'mobx-state-tree';
+import { ErrorBoundary } from 'react-error-boundary';
 import { getConf } from '@jbrowse/core/configuration';
-import { ResizeHandle } from '@jbrowse/core/ui';
+import { ResizeHandle, ErrorMessage } from '@jbrowse/core/ui';
 import { useDebouncedCallback } from '@jbrowse/core/util';
 import TrackLabel from './TrackLabel';
 const useStyles = makeStyles()({
@@ -28,7 +29,7 @@ const useStyles = makeStyles()({
     trackLabel: {
         zIndex: 3,
     },
-    // aligns with block bounderies. check for example the breakpoint split view
+    // aligns with block boundaries. check for example the breakpoint split view
     // demo to see if features align if wanting to change things
     renderingComponentContainer: {
         position: 'absolute',
@@ -70,6 +71,7 @@ function TrackContainer({ model, track, }) {
     const trackId = getConf(track, 'trackId');
     const ref = useRef(null);
     const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
+    const minimized = track.minimized;
     const debouncedOnDragEnter = useDebouncedCallback(() => {
         if (isAlive(display) && dimmed) {
             moveTrack(draggingTrackId, track.id);
@@ -85,15 +87,16 @@ function TrackContainer({ model, track, }) {
     }, [model.trackRefs, trackId]);
     return (React.createElement(Paper, { className: classes.root, variant: "outlined" },
         React.createElement(TrackContainerLabel, { model: track, view: model }),
-        React.createElement("div", { className: classes.trackRenderingContainer, style: { height }, onScroll: event => display.setScrollTop(event.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` },
-            React.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
-                React.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
-            DisplayBlurb ? (React.createElement("div", { style: {
-                    position: 'absolute',
-                    left: 0,
-                    top: display.height - 20,
-                } },
-                React.createElement(DisplayBlurb, { model: display }))) : null),
+        React.createElement(ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => React.createElement(ErrorMessage, { error: error }) },
+            React.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (React.createElement(React.Fragment, null,
+                React.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
+                    React.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
+                DisplayBlurb ? (React.createElement("div", { style: {
+                        position: 'absolute',
+                        left: 0,
+                        top: display.height - 20,
+                    } },
+                    React.createElement(DisplayBlurb, { model: display }))) : null)) : null)),
         React.createElement("div", { className: classes.overlay, style: {
                 height: display.height,
                 background: dimmed ? 'rgba(0, 0, 0, 0.4)' : undefined,

package/esm/LinearGenomeView/components/TrackContainer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAA;AAIpD,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAIzD,OAAO,UAAU,MAAM,cAAc,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,SAAS,EAAE,CAAC;KACb;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,SAAS,EAAE,YAAY;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,OAAO,EAAE;QACP,aAAa,EAAE,MAAM;QACrB,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;KACV;IACD,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,QAAQ,CAClC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAwC,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,OAAO,CAAC,EAAE,CAAA;IAC9E,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,oBAAoB,GAAG,oBAAoB,CAAC,GAAG,EAAE;QACrD,IAAI,OAAO,CAAC,OAAO,CAAC,IAAI,MAAM,EAAE;YAC9B,SAAS,CAAC,eAAe,EAAE,KAAK,CAAC,EAAE,CAAC,CAAA;SACrC;IACH,CAAC,EAAE,GAAG,CAAC,CAAA;IACP,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,UAAU;QAChD,oBAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,GAAI;QAClD,oBAAC,aAAa,IACZ,GAAG,EAAE,KAAK,CAAC,EAAE,EACb,iBAAiB,EAAE,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;YAEhE,6BACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,EAC1C,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,GAAG,CAAC,aAAa,CAAC,SAAS,CAAC,EAClE,WAAW,EAAE,oBAAoB,iBACpB,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE,IAE5D,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ;gBACE,6BACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;oBAEpD,oBAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,gBAAgB,GACpC,CACE;gBAEL,YAAY,CAAC,CAAC,CAAC,CACd,6BACE,KAAK,EAAE;wBACL,QAAQ,EAAE,UAAU;wBACpB,IAAI,EAAE,CAAC;wBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;qBACzB;oBAED,oBAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,6BACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;gBACL,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,SAAS;aACtD,EACD,WAAW,EAAE,oBAAoB,GACjC;QACF,oBAAC,YAAY,IACX,MAAM,EAAE,OAAO,CAAC,YAAY,EAC5B,SAAS,EAAE,OAAO,CAAC,YAAY,GAC/B,CACI,CACT,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TrackLabel.js

@@ -11,6 +11,8 @@ import { bindTrigger, bindPopover, usePopupState, } from 'material-ui-popup-stat
 import MoreVertIcon from '@mui/icons-material/MoreVert';
 import DragIcon from '@mui/icons-material/DragIndicator';
 import CloseIcon from '@mui/icons-material/Close';
+import MinimizeIcon from '@mui/icons-material/Minimize';
+import AddIcon from '@mui/icons-material/Add';
 const useStyles = makeStyles()(theme => ({
     root: {
         background: alpha(theme.palette.background.paper, 0.8),
@@ -46,6 +48,7 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
     const view = getContainingView(track);
     const session = getSession(track);
     const trackConf = track.configuration;
+    const minimized = track.minimized;
     const trackId = getConf(track, 'trackId');
     const trackName = getTrackName(trackConf, session);
     const popupState = usePopupState({
@@ -53,6 +56,11 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
         variant: 'popover',
     });
     const items = [
+        {
+            label: minimized ? 'Restore track' : 'Minimize track',
+            icon: minimized ? AddIcon : MinimizeIcon,
+            onClick: () => track.setMinimized(!minimized),
+        },
         ...(((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, trackConf)) || []),
         ...track.trackMenuItems(),
     ].sort((a, b) => (b.priority || 0) - (a.priority || 0));
@@ -68,7 +76,7 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
             React.createElement(DragIcon, { className: classes.dragHandleIcon, fontSize: "small" })),
         React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
             React.createElement(CloseIcon, { fontSize: "small" })),
-        React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
+        React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName + (minimized ? ' (minimized)' : '')),
         React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
             React.createElement(MoreVertIcon, { fontSize: "small" })),
         React.createElement(CascadingMenu, { ...bindPopover(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));

package/esm/LinearGenomeView/components/TrackLabel.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TracksContainer.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function TracksContainer({ children, model, }: {
     children: React.ReactNode;
     model: LGV;

package/esm/LinearGenomeView/components/TracksContainer.js

@@ -1,13 +1,17 @@
-import React, { useEffect, useRef, useState } from 'react';
+import React, { useRef } from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
-import normalizeWheel from 'normalize-wheel';
-// locals
+import { Menu } from '@jbrowse/core/ui';
+// local utils
 import { SCALE_BAR_HEIGHT } from '..';
-import RubberBand from './RubberBand';
-import ScaleBar from './ScaleBar';
+import { useSideScroll, useRangeSelect, useWheelScroll } from './hooks';
+// local components
+import Rubberband from './Rubberband';
+import Scalebar from './Scalebar';
 import Gridlines from './Gridlines';
 import CenterLine from './CenterLine';
+import VerticalGuide from './VerticalGuide';
+import RubberbandSpan from './RubberbandSpan';
 const useStyles = makeStyles()({
     tracksContainer: {
         position: 'relative',
@@ -20,123 +24,22 @@ const useStyles = makeStyles()({
 });
 function TracksContainer({ children, model, }) {
     const { classes } = useStyles();
-    // refs are to store these variables to avoid repeated rerenders associated
-    // with useState/setState
-    const delta = useRef(0);
-    const scheduled = useRef(false);
-    const timeout = useRef();
+    const { mouseDown: mouseDown1, mouseUp } = useSideScroll(model);
     const ref = useRef(null);
-    const prevX = useRef(0);
-    const [mouseDragging, setMouseDragging] = useState(false);
-    useEffect(() => {
-        let cleanup = () => { };
-        function globalMouseMove(event) {
-            event.preventDefault();
-            const currX = event.clientX;
-            const distance = currX - prevX.current;
-            if (distance) {
-                // use rAF to make it so multiple event handlers aren't fired per-frame
-                // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-                if (!scheduled.current) {
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(-distance);
-                        scheduled.current = false;
-                        prevX.current = event.clientX;
-                    });
-                }
-            }
-        }
-        function globalMouseUp() {
-            prevX.current = 0;
-            if (mouseDragging) {
-                setMouseDragging(false);
-            }
-        }
-        if (mouseDragging) {
-            window.addEventListener('mousemove', globalMouseMove, true);
-            window.addEventListener('mouseup', globalMouseUp, true);
-            cleanup = () => {
-                window.removeEventListener('mousemove', globalMouseMove, true);
-                window.removeEventListener('mouseup', globalMouseUp, true);
-            };
-        }
-        return cleanup;
-    }, [model, mouseDragging, prevX]);
-    function mouseDown(event) {
-        // check if clicking a draggable element or a resize handle
-        const target = event.target;
-        if (target.draggable || target.dataset.resizer) {
-            return;
-        }
-        // otherwise do click and drag scroll
-        if (event.button === 0) {
-            prevX.current = event.clientX;
-            setMouseDragging(true);
-        }
-    }
-    // this local mouseup is used in addition to the global because sometimes
-    // the global add/remove are not called in time, resulting in issue #533
-    function mouseUp(event) {
-        event.preventDefault();
-        setMouseDragging(false);
-    }
-    function mouseLeave(event) {
-        event.preventDefault();
-    }
-    useEffect(() => {
-        const curr = ref.current;
-        // if ctrl is held down, zoom in with y-scroll
-        // else scroll horizontally with x-scroll
-        function onWheel(origEvent) {
-            const event = normalizeWheel(origEvent);
-            if (origEvent.ctrlKey === true) {
-                origEvent.preventDefault();
-                delta.current += event.pixelY / 500;
-                model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
-                if (timeout.current) {
-                    clearTimeout(timeout.current);
-                }
-                timeout.current = setTimeout(() => {
-                    model.setScaleFactor(1);
-                    model.zoomTo(delta.current > 0
-                        ? model.bpPerPx * (1 + delta.current)
-                        : model.bpPerPx / (1 - delta.current));
-                    delta.current = 0;
-                }, 300);
-            }
-            else {
-                // this is needed to stop the event from triggering "back button
-                // action" on MacOSX etc.  but is a heuristic to avoid preventing the
-                // inner-track scroll behavior
-                if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
-                    origEvent.preventDefault();
-                }
-                delta.current += event.pixelX;
-                if (!scheduled.current) {
-                    // use rAF to make it so multiple event handlers aren't fired per-frame
-                    // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(delta.current);
-                        delta.current = 0;
-                        scheduled.current = false;
-                    });
-                }
-            }
-        }
-        if (curr) {
-            curr.addEventListener('wheel', onWheel);
-            return () => {
-                curr.removeEventListener('wheel', onWheel);
-            };
-        }
-        return () => { };
-    }, [model]);
-    return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
+    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown: mouseDown2, } = useRangeSelect(ref, model, true);
+    useWheelScroll(ref, model);
+    return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: event => {
+            mouseDown1(event);
+            mouseDown2(event);
+        }, onMouseMove: mouseMove, onMouseUp: mouseUp },
         model.showGridlines ? React.createElement(Gridlines, { model: model }) : null,
         model.showCenterLine ? React.createElement(CenterLine, { model: model }) : null,
-        React.createElement(RubberBand, { model: model, ControlComponent: React.createElement(ScaleBar, { model: model, style: { height: SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
+        guideX !== undefined ? (React.createElement(VerticalGuide, { model: model, coordX: guideX })) : rubberbandOn ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null,
+        anchorPosition ? (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
+                left: anchorPosition.clientX,
+                top: anchorPosition.clientY,
+            }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
+        React.createElement(Rubberband, { model: model, ControlComponent: React.createElement(Scalebar, { model: model, style: { height: SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
         children));
 }
 export default observer(TracksContainer);

package/esm/LinearGenomeView/components/TracksContainer.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/VerticalGuide.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { LinearGenomeViewModel } from '..';
+type LGV = LinearGenomeViewModel;
+declare function VerticalGuide({ model, coordX }: {
+    model: LGV;
+    coordX: number;
+}): JSX.Element;
+declare const _default: typeof VerticalGuide;
+export default _default;