npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.2.0 → 2.2.2 - Mend

@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (225) hide show

package/esm/LinearBasicDisplay/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearBasicDisplay/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AACjE,OAAO,EAAE,0BAA0B,EAAE,MAAM,sBAAsB,CAAA;AAEjE,SAAS;AACT,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,YAAY,MAAM,SAAS,CAAA;AAElC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,MAAM,GAAG,YAAY,CAAC,aAAa,CAAC,CAAA;QAC1C,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,oBAAoB;YAC1B,YAAY,EAAE,MAAM;YACpB,UAAU,EAAE,YAAY,CAAC,MAAM,CAAC;YAChC,SAAS,EAAE,cAAc;YACzB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,CAAA"}

package/esm/LinearBasicDisplay/model.d.ts CHANGED Viewed

@@ -4,13 +4,17 @@ import { MenuItem } from '@jbrowse/core/ui';
 import { Instance } from 'mobx-state-tree';
 /**
  * #stateModel LinearBasicDisplay
- * used by `FeatureTrack`, has simple settings like "show/hide feature labels", etc.
+ * used by `FeatureTrack`, has simple settings like "show/hide feature labels",
+ * etc.
  */
 declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
+    /**
+     * #getter
+     */
     height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
@@ -34,14 +38,13 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-        /**
-         * #property
-         */
         layout: any;
         status: string;
         error: unknown;
         message: string | undefined;
-        maxHeightReached: boolean;
+        maxHeightReached: boolean; /**
+         * #getter
+         */
         ReactComponent: ({ model, }: {
             model: any;
         }) => any;
@@ -49,7 +52,8 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     } & {
         doReload(): void;
         afterAttach(): void;
-        setStatus(message: string): void; /**
+        setStatus(message: string): void;
+        /**
          * #getter
          */
         setLoading(abortController: AbortController): void;
@@ -58,7 +62,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
-            maxHeightReached: boolean;
+            maxHeightReached: boolean; /**
+             * #method
+             */
             renderProps: any;
         } | undefined): void;
         setError(error: unknown): void;
@@ -107,9 +113,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
              */
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; /**
-             * #property
-             */
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
@@ -135,12 +139,15 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             rendererTypeName: string;
             error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }> | null;
+    }> | null; /**
+     * #action
+     */
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined; /**
+    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+    /**
      * #method
      */
     trackMenuItems(): MenuItem[];
@@ -292,6 +299,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;
-export declare type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
-export declare type FeatureTrackModel = Instance<FeatureTrackStateModel>;
+export type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
+export type FeatureTrackModel = Instance<FeatureTrackStateModel>;
 export default stateModelFactory;

package/esm/LinearBasicDisplay/model.js CHANGED Viewed

@@ -9,7 +9,8 @@ import { BaseLinearDisplay } from '../BaseLinearDisplay';
 const SetMaxHeightDlg = lazy(() => import('./components/SetMaxHeight'));
 /**
  * #stateModel LinearBasicDisplay
- * used by `FeatureTrack`, has simple settings like "show/hide feature labels", etc.
+ * used by `FeatureTrack`, has simple settings like "show/hide feature labels",
+ * etc.
  */
 function stateModelFactory(configSchema) {
     return types

package/esm/LinearBasicDisplay/model.js.map CHANGED Viewed

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package/esm/LinearGenomeView/components/CenterLine.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function CenterLine({ model }: {
     model: LGV;
 }): JSX.Element | null;

package/esm/LinearGenomeView/components/ExportSvgDialog.js CHANGED Viewed

@@ -1,16 +1,6 @@
 import React, { useState } from 'react';
-import { makeStyles } from 'tss-react/mui';
-import { Button, Checkbox, CircularProgress, Dialog, DialogActions, DialogContent, DialogTitle, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
-import { ErrorMessage } from '@jbrowse/core/ui';
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
+import { Button, Checkbox, CircularProgress, DialogActions, DialogContent, FormControlLabel, TextField, Typography, } from '@mui/material';
+import { Dialog, ErrorMessage } from '@jbrowse/core/ui';
 function LoadingMessage() {
     return (React.createElement("div", null,
         React.createElement(CircularProgress, { size: 20, style: { marginRight: 20 } }),
@@ -23,12 +13,7 @@ export default function ExportSvgDlg({ model, handleClose, }) {
     const [loading, setLoading] = useState(false);
     const [filename, setFilename] = useState('jbrowse.svg');
     const [error, setError] = useState();
-    const { classes } = useStyles();
-    return (React.createElement(Dialog, { open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Export SVG",
-            React.createElement(IconButton, { className: classes.closeButton, onClick: handleClose },
-                React.createElement(CloseIcon, null))),
+    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Export SVG" },
         React.createElement(DialogContent, null,
             error ? (React.createElement(ErrorMessage, { error: error })) : loading ? (React.createElement(LoadingMessage, null)) : null,
             React.createElement(TextField, { helperText: "filename", value: filename, onChange: event => setFilename(event.target.value) }),

package/esm/LinearGenomeView/components/ExportSvgDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"ExportSvgDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ExportSvgDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAGvD,SAAS,cAAc;IACrB,OAAO,CACL;QACE,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,GAAI;QAC1D,oBAAC,UAAU,IAAC,OAAO,EAAC,QAAQ,mBAA0B,CAClD,CACP,CAAA;AACH,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,YAAY,CAAC,EACnC,KAAK,EACL,WAAW,GAIZ;IACC,aAAa;IACb,MAAM,eAAe,GAAG,OAAO,eAAe,KAAK,WAAW,CAAA;IAC9D,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAA;IACvE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,aAAa,CAAC,CAAA;IACvD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,YAAY;QACnD,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAC/B,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CACZ,oBAAC,cAAc,OAAG,CACnB,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,SAAS,IACR,UAAU,EAAC,UAAU,EACrB,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GAClD;YACD,eAAe,CAAC,CAAC,CAAC,CACjB,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,GAAG,EAAE,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,GAC/C,EAEJ,KAAK,EAAC,8EAA8E,GACpF,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,+FAGE,CACd,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,KAAK,IAAI,EAAE;oBAClB,UAAU,CAAC,IAAI,CAAC,CAAA;oBAChB,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACnB,IAAI;wBACF,MAAM,KAAK,CAAC,SAAS,CAAC,EAAE,eAAe,EAAE,QAAQ,EAAE,CAAC,CAAA;wBACpD,WAAW,EAAE,CAAA;qBACd;oBAAC,OAAO,CAAC,EAAE;wBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACX,UAAU,CAAC,KAAK,CAAC,CAAA;qBAClB;gBACH,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function SequenceDialog({ model, handleClose, }: {
     model: LGV;
     handleClose: () => void;

package/esm/LinearGenomeView/components/GetSequenceDialog.js CHANGED Viewed

@@ -1,30 +1,24 @@
 import React, { useEffect, useMemo, useState } from 'react';
 import { makeStyles } from 'tss-react/mui';
-import { Button, CircularProgress, Container, Dialog, DialogActions, DialogContent, DialogTitle, Divider, IconButton, TextField, Typography, } from '@mui/material';
+import { Button, CircularProgress, Container, DialogActions, DialogContent, TextField, Typography, } from '@mui/material';
 import { observer } from 'mobx-react';
 import { saveAs } from 'file-saver';
 import { getConf } from '@jbrowse/core/configuration';
 import copy from 'copy-to-clipboard';
+import { Dialog } from '@jbrowse/core/ui';
 import { getSession } from '@jbrowse/core/util';
 import { formatSeqFasta } from '@jbrowse/core/util/formatFastaStrings';
 // icons
 import { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons';
-import CloseIcon from '@mui/icons-material/Close';
 import GetAppIcon from '@mui/icons-material/GetApp';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
+const useStyles = makeStyles()({
     dialogContent: {
         width: '80em',
     },
     textAreaFont: {
         fontFamily: 'Courier New',
     },
-}));
+});
 /**
  * Fetches and returns a list features for a given list of regions
  */
@@ -103,15 +97,10 @@ function SequenceDialog({ model, handleClose, }) {
         };
     }, [model, session, regionsSelected, setSequence]);
     const sequenceTooLarge = sequence ? sequence.length > 1000000 : false;
-    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Reference sequence",
-            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => {
-                    handleClose();
-                    model.setOffsets(undefined, undefined);
-                }, size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: () => {
+            handleClose();
+            model.setOffsets(undefined, undefined);
+        }, title: "Reference sequence" },
         React.createElement(DialogContent, null,
             error ? React.createElement(Typography, { color: "error" }, `${error}`) : null,
             loading && !error ? (React.createElement(Container, null,

package/esm/LinearGenomeView/components/GetSequenceDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/esm/LinearGenomeView/components/Gridlines.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function VerticalGuides({ model }: {
     model: LGV;
 }): JSX.Element;

package/esm/LinearGenomeView/components/Header.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const LinearGenomeViewHeader: ({ model }: {
     model: LGV;
 }) => JSX.Element | null;

package/esm/LinearGenomeView/components/Header.js CHANGED Viewed

@@ -9,7 +9,7 @@ import ArrowForwardIcon from '@mui/icons-material/ArrowForward';
 import ArrowBackIcon from '@mui/icons-material/ArrowBack';
 // locals
 import { WIDGET_HEIGHT, SPACING, HEADER_BAR_HEIGHT, } from '..';
-import OverviewScaleBar from './OverviewScaleBar';
+import OverviewScalebar from './OverviewScalebar';
 import ZoomControls from './ZoomControls';
 import SearchBox from './SearchBox';
 const useStyles = makeStyles()(theme => ({
@@ -74,7 +74,7 @@ const Controls = ({ model }) => {
         React.createElement("div", { className: classes.spacer })));
 };
 const LinearGenomeViewHeader = observer(({ model }) => {
-    return !model.hideHeader ? (model.hideHeaderOverview ? (React.createElement(Controls, { model: model })) : (React.createElement(OverviewScaleBar, { model: model },
+    return !model.hideHeader ? (model.hideHeaderOverview ? (React.createElement(Controls, { model: model })) : (React.createElement(OverviewScalebar, { model: model },
         React.createElement(Controls, { model: model })))) : null;
 });
 export default LinearGenomeViewHeader;

package/esm/LinearGenomeView/components/HelpDialog.js CHANGED Viewed

@@ -1,23 +1,8 @@
 import React from 'react';
-import { Button, Dialog, DialogActions, DialogContent, DialogTitle, Divider, IconButton, } from '@mui/material';
-import { makeStyles } from 'tss-react/mui';
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
+import { Button, DialogActions, DialogContent, Divider } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 export default function HelpDialog({ handleClose, }) {
-    const { classes } = useStyles();
-    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Using the search box",
-            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Using the search box" },
         React.createElement(DialogContent, null,
             React.createElement("h3", null, "Searching"),
             React.createElement("ul", null,

package/esm/LinearGenomeView/components/HelpDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/ImportForm.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const ImportForm: ({ model }: {
     model: LGV;
 }) => JSX.Element;

package/esm/LinearGenomeView/components/ImportForm.js CHANGED Viewed

@@ -4,6 +4,7 @@ import { observer } from 'mobx-react';
 import { getSession } from '@jbrowse/core/util';
 import { Button, CircularProgress, FormControl, Container, Grid, } from '@mui/material';
 import { ErrorMessage, AssemblySelector } from '@jbrowse/core/ui';
+// icons
 import CloseIcon from '@mui/icons-material/Close';
 // locals
 import RefNameAutocomplete from './RefNameAutocomplete';
@@ -27,7 +28,6 @@ const ImportForm = observer(({ model }) => {
     const { assemblyNames, assemblyManager, textSearchManager } = session;
     const { rankSearchResults, isSearchDialogDisplayed, error } = model;
     const [selectedAsm, setSelectedAsm] = useState(assemblyNames[0]);
-    const [importError, setImportError] = useState(error);
     const [option, setOption] = useState();
     const searchScope = model.searchScope(selectedAsm);
     const assembly = assemblyManager.get(selectedAsm);
@@ -35,19 +35,21 @@ const ImportForm = observer(({ model }) => {
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
     const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
-    const err = assemblyError || importError;
+    const displayError = assemblyError || error;
     const [value, setValue] = useState('');
     const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
     // useEffect resets to an "initial state" of displaying first region from assembly
-    // after assembly change
+    // after assembly change. needs to react to selectedAsm as well as r0 because changing
+    // assembly will run setValue('') and then r0 may not change if assembly names are the
+    // same across assemblies, but it still needs to be reset
     useEffect(() => {
         setValue(r0);
-    }, [r0]);
-    function navToOption(option) {
+    }, [r0, selectedAsm]);
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, selectedAsm);
+            await model.navToLocString(location, selectedAsm);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -61,14 +63,14 @@ const ImportForm = observer(({ model }) => {
     async function handleSelectedRegion(input) {
         try {
             if ((option === null || option === void 0 ? void 0 : option.getDisplayString()) === input && option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
             }
             else {
                 const [ref, rest] = splitLast(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, selectedAsm);
+                    await model.navToLocString(input, selectedAsm);
                 }
                 else {
                     const results = await fetchResults({
@@ -83,10 +85,10 @@ const ImportForm = observer(({ model }) => {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, selectedAsm);
+                        await model.navToLocString(input, selectedAsm);
                     }
                 }
             }
@@ -99,24 +101,24 @@ const ImportForm = observer(({ model }) => {
     // implementation notes:
     // having this wrapped in a form allows intuitive use of enter key to submit
     return (React.createElement("div", { className: classes.container },
-        err ? React.createElement(ErrorMessage, { error: err }) : null,
+        displayError ? React.createElement(ErrorMessage, { error: displayError }) : null,
         React.createElement(Container, { className: classes.importFormContainer },
-            React.createElement("form", { onSubmit: event => {
+            React.createElement("form", { onSubmit: async (event) => {
                     event.preventDefault();
                     model.setError(undefined);
                     if (value) {
-                        handleSelectedRegion(value);
+                        // has it's own error handling
+                        await handleSelectedRegion(value);
                     }
                 } },
                 React.createElement(Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     React.createElement(Grid, { item: true },
                         React.createElement(FormControl, null,
                             React.createElement(AssemblySelector, { onChange: val => {
-                                    setImportError('');
                                     setSelectedAsm(val);
                                     setValue('');
                                 }, session: session, selected: selectedAsm }))),
-                    React.createElement(Grid, { item: true }, selectedAsm ? (err ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(FormControl, null,
+                    React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(FormControl, null,
                         React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
                                 queryString,
                                 assembly,
@@ -124,7 +126,7 @@ const ImportForm = observer(({ model }) => {
                                 rankSearchResults,
                                 searchScope,
                             }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value,
-                            // note: minWidth 270 accomodates full width of helperText
+                            // note: minWidth 270 accommodates full width of helperText
                             minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
                                 variant: 'outlined',
                                 helperText: 'Enter sequence name, feature name, or location',

package/esm/LinearGenomeView/components/ImportForm.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/LinearGenomeView.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const LinearGenomeView: ({ model }: {
     model: LGV;
 }) => JSX.Element;

package/esm/LinearGenomeView/components/LinearGenomeView.js CHANGED Viewed

@@ -1,9 +1,8 @@
 import React from 'react';
 import { Button, Paper, Typography } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import { ErrorBoundary } from 'react-error-boundary';
 import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
-import { LoadingEllipses, ErrorMessage } from '@jbrowse/core/ui';
+import { LoadingEllipses } from '@jbrowse/core/ui';
 import { observer } from 'mobx-react';
 import TrackContainer from './TrackContainer';
 import TracksContainer from './TracksContainer';
@@ -35,8 +34,7 @@ const LinearGenomeView = observer(({ model }) => {
         React.createElement(MiniControlsComponent, { model: model }),
         React.createElement(TracksContainer, { model: model }, !tracks.length ? (React.createElement(Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (React.createElement(React.Fragment, null,
             React.createElement(Typography, null, "No tracks active."),
-            React.createElement(Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: React.createElement(TrackSelectorIcon, null) }, "Open track selector"))) : (React.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (React.createElement(ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => React.createElement(ErrorMessage, { error: error }) },
-            React.createElement(TrackContainer, { model: model, track: track }))))))));
+            React.createElement(Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: React.createElement(TrackSelectorIcon, null) }, "Open track selector"))) : (React.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (React.createElement(TrackContainer, { key: track.id, model: model, track: track })))))));
 });
 export default LinearGenomeView;
 //# sourceMappingURL=LinearGenomeView.js.map

package/esm/LinearGenomeView/components/LinearGenomeView.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
 import { LinearGenomeViewModel, ExportSvgOptions } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
 export {};

package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js CHANGED Viewed

@@ -8,8 +8,8 @@ import Base1DView from '@jbrowse/core/util/Base1DViewModel';
 // locals
 import Ruler from './Ruler';
 import { HEADER_OVERVIEW_HEIGHT, } from '..';
-import { Polygon, Cytobands } from './OverviewScaleBar';
-function ScaleBar({ model, fontSize }) {
+import { Polygon, Cytobands } from './OverviewScalebar';
+function Scalebar({ model, fontSize }) {
     const { offsetPx, dynamicBlocks: { totalWidthPxWithoutBorders: totalWidthPx, totalBp }, } = model;
     const displayBp = getBpDisplayStr(totalBp);
     const x0 = Math.max(-offsetPx, 0);
@@ -82,7 +82,7 @@ const SVGHeader = ({ model }) => {
             React.createElement("g", { transform: `translate(0,${HEADER_OVERVIEW_HEIGHT})` },
                 React.createElement(Polygon, { overview: overview, model: model, useOffset: false })))) : null,
         React.createElement("g", { transform: `translate(0 ${fontSize + cytobandHeight})` },
-            React.createElement(ScaleBar, { model: model, fontSize: fontSize })),
+            React.createElement(Scalebar, { model: model, fontSize: fontSize })),
         React.createElement("g", { transform: `translate(0 ${rulerHeight + cytobandHeight})` },
             React.createElement(SVGRuler, { model: model, fontSize: fontSize, width: width }))));
 };

package/esm/LinearGenomeView/components/{OverviewRubberBand.d.ts → OverviewRubberband.d.ts} RENAMED Viewed

@@ -1,11 +1,11 @@
 import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
-declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
+type LGV = LinearGenomeViewModel;
+declare function OverviewRubberband({ model, overview, ControlComponent, }: {
     model: LGV;
     overview: Base1DViewModel;
     ControlComponent?: React.ReactElement;
 }): JSX.Element;
-declare const _default: typeof OverviewRubberBand;
+declare const _default: typeof OverviewRubberband;
 export default _default;