@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.2

package/esm/LinearGenomeView/components/VerticalGuide.js

@@ -0,0 +1,24 @@
+import React from 'react';
+import { Tooltip } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import { stringify } from '@jbrowse/core/util';
+const useStyles = makeStyles()({
+    guide: {
+        pointerEvents: 'none',
+        height: '100%',
+        width: 1,
+        position: 'absolute',
+        zIndex: 10,
+    },
+});
+function VerticalGuide({ model, coordX }) {
+    const { classes } = useStyles();
+    return (React.createElement(Tooltip, { open: true, placement: "top", title: stringify(model.pxToBp(coordX)), arrow: true },
+        React.createElement("div", { className: classes.guide, style: {
+                left: coordX,
+                background: 'red',
+            } })));
+}
+export default observer(VerticalGuide);
+//# sourceMappingURL=VerticalGuide.js.map

package/esm/LinearGenomeView/components/VerticalGuide.js.map

@@ -0,0 +1 @@
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package/esm/LinearGenomeView/components/hooks.d.ts

@@ -0,0 +1,65 @@
+import React from 'react';
+import { LinearGenomeViewModel } from '..';
+type LGV = LinearGenomeViewModel;
+export declare function useSideScroll(model: LGV): {
+    mouseDown: (event: React.MouseEvent) => void;
+    mouseUp: (event: React.MouseEvent) => void;
+};
+interface AnchorPosition {
+    offsetX: number;
+    clientX: number;
+    clientY: number;
+}
+export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, model: LGV, shiftOnly?: boolean): {
+    open: boolean;
+    guideX: number | undefined;
+    mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseOut: () => void;
+    handleMenuItemClick: (_: unknown, callback: Function) => void;
+    rubberbandOn?: undefined;
+    handleClose?: undefined;
+    leftBpOffset?: undefined;
+    rightBpOffset?: undefined;
+    anchorPosition?: undefined;
+    numOfBpSelected?: undefined;
+    width?: undefined;
+    left?: undefined;
+} | {
+    open: boolean;
+    rubberbandOn: boolean;
+    mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseOut: () => void;
+    handleClose: () => void;
+    handleMenuItemClick: (_: unknown, callback: Function) => void;
+    leftBpOffset: {
+        coord: number;
+        index: number;
+        refName: string;
+        oob: boolean;
+        assemblyName: string;
+        offset: number;
+        start: number;
+        end: number;
+        reversed: boolean;
+    };
+    rightBpOffset: {
+        coord: number;
+        index: number;
+        refName: string;
+        oob: boolean;
+        assemblyName: string;
+        offset: number;
+        start: number;
+        end: number;
+        reversed: boolean;
+    };
+    anchorPosition: AnchorPosition | undefined;
+    numOfBpSelected: number;
+    width: number;
+    left: number;
+    guideX?: undefined;
+};
+export declare function useWheelScroll(ref: React.RefObject<HTMLDivElement>, model: LGV): void;
+export {};

package/esm/LinearGenomeView/components/hooks.js

@@ -0,0 +1,255 @@
+import { useRef, useEffect, useState } from 'react';
+import normalizeWheel from 'normalize-wheel';
+import { getRelativeX } from './util';
+export function useSideScroll(model) {
+    const [mouseDragging, setMouseDragging] = useState(false);
+    // refs are to store these variables to avoid repeated rerenders associated
+    // with useState/setState
+    const scheduled = useRef(false);
+    const prevX = useRef(0);
+    useEffect(() => {
+        let cleanup = () => { };
+        function globalMouseMove(event) {
+            event.preventDefault();
+            const currX = event.clientX;
+            const distance = currX - prevX.current;
+            if (distance) {
+                // use rAF to make it so multiple event handlers aren't fired per-frame
+                // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
+                if (!scheduled.current) {
+                    scheduled.current = true;
+                    window.requestAnimationFrame(() => {
+                        model.horizontalScroll(-distance);
+                        scheduled.current = false;
+                        prevX.current = event.clientX;
+                    });
+                }
+            }
+        }
+        function globalMouseUp() {
+            prevX.current = 0;
+            if (mouseDragging) {
+                setMouseDragging(false);
+            }
+        }
+        if (mouseDragging) {
+            window.addEventListener('mousemove', globalMouseMove, true);
+            window.addEventListener('mouseup', globalMouseUp, true);
+            cleanup = () => {
+                window.removeEventListener('mousemove', globalMouseMove, true);
+                window.removeEventListener('mouseup', globalMouseUp, true);
+            };
+        }
+        return cleanup;
+    }, [model, mouseDragging, prevX]);
+    function mouseDown(event) {
+        if (event.shiftKey) {
+            return;
+        }
+        // check if clicking a draggable element or a resize handle
+        const target = event.target;
+        if (target.draggable || target.dataset.resizer) {
+            return;
+        }
+        // otherwise do click and drag scroll
+        if (event.button === 0) {
+            prevX.current = event.clientX;
+            setMouseDragging(true);
+        }
+    }
+    // this local mouseup is used in addition to the global because sometimes
+    // the global add/remove are not called in time, resulting in issue #533
+    function mouseUp(event) {
+        event.preventDefault();
+        setMouseDragging(false);
+    }
+    return { mouseDown, mouseUp };
+}
+export function useRangeSelect(ref, model, shiftOnly) {
+    const [startX, setStartX] = useState();
+    const [currentX, setCurrentX] = useState();
+    // clientX and clientY used for anchorPosition for menu
+    // offsetX used for calculations about width of selection
+    const [anchorPosition, setAnchorPosition] = useState();
+    const [guideX, setGuideX] = useState();
+    const mouseDragging = startX !== undefined && anchorPosition === undefined;
+    useEffect(() => {
+        function computeOffsets(offsetX) {
+            if (startX === undefined) {
+                return;
+            }
+            const leftPx = Math.min(startX, offsetX);
+            const rightPx = Math.max(startX, offsetX);
+            return {
+                leftOffset: model.pxToBp(leftPx),
+                rightOffset: model.pxToBp(rightPx),
+            };
+        }
+        function globalMouseMove(event) {
+            if (ref.current && mouseDragging) {
+                const relativeX = getRelativeX(event, ref.current);
+                setCurrentX(relativeX);
+            }
+        }
+        function globalMouseUp(event) {
+            if (startX !== undefined && ref.current) {
+                const { clientX, clientY } = event;
+                const offsetX = getRelativeX(event, ref.current);
+                // as stated above, store both clientX/Y and offsetX for different
+                // purposes
+                setAnchorPosition({
+                    offsetX,
+                    clientX,
+                    clientY,
+                });
+                const args = computeOffsets(offsetX);
+                if (args) {
+                    model.setOffsets(args.leftOffset, args.rightOffset);
+                }
+                setGuideX(undefined);
+            }
+        }
+        if (mouseDragging) {
+            window.addEventListener('mousemove', globalMouseMove);
+            window.addEventListener('mouseup', globalMouseUp);
+            return () => {
+                window.removeEventListener('mousemove', globalMouseMove);
+                window.removeEventListener('mouseup', globalMouseUp);
+            };
+        }
+        return () => { };
+    }, [startX, mouseDragging, anchorPosition, model, ref]);
+    useEffect(() => {
+        if (!mouseDragging &&
+            currentX !== undefined &&
+            startX !== undefined &&
+            Math.abs(currentX - startX) <= 3) {
+            handleClose();
+        }
+    }, [mouseDragging, currentX, startX]);
+    function mouseDown(event) {
+        if (shiftOnly && !event.shiftKey) {
+            return;
+        }
+        event.preventDefault();
+        event.stopPropagation();
+        const relativeX = getRelativeX(event, ref.current);
+        setStartX(relativeX);
+        setCurrentX(relativeX);
+    }
+    function mouseMove(event) {
+        if (shiftOnly) {
+            if (event.shiftKey) {
+                setGuideX(getRelativeX(event, ref.current));
+            }
+            else {
+                setGuideX(undefined);
+            }
+        }
+        else {
+            setGuideX(getRelativeX(event, ref.current));
+        }
+    }
+    function mouseOut() {
+        setGuideX(undefined);
+        model.setOffsets(undefined, undefined);
+    }
+    function handleClose() {
+        setAnchorPosition(undefined);
+        setStartX(undefined);
+        setCurrentX(undefined);
+    }
+    function handleMenuItemClick(_, callback) {
+        callback();
+        handleClose();
+    }
+    const open = Boolean(anchorPosition);
+    if (startX === undefined) {
+        return {
+            open,
+            guideX,
+            mouseDown,
+            mouseMove,
+            mouseOut,
+            handleMenuItemClick,
+        };
+    }
+    else {
+        const right = anchorPosition ? anchorPosition.offsetX : currentX || 0;
+        const left = right < startX ? right : startX;
+        const width = Math.abs(right - startX);
+        const leftBpOffset = model.pxToBp(left);
+        const rightBpOffset = model.pxToBp(left + width);
+        const numOfBpSelected = Math.ceil(width * model.bpPerPx);
+        return {
+            open,
+            rubberbandOn: true,
+            mouseDown,
+            mouseMove,
+            mouseOut,
+            handleClose,
+            handleMenuItemClick,
+            leftBpOffset,
+            rightBpOffset,
+            anchorPosition,
+            numOfBpSelected,
+            width,
+            left,
+        };
+    }
+}
+export function useWheelScroll(ref, model) {
+    const delta = useRef(0);
+    const timeout = useRef();
+    const scheduled = useRef(false);
+    useEffect(() => {
+        const curr = ref.current;
+        // if ctrl is held down, zoom in with y-scroll
+        // else scroll horizontally with x-scroll
+        function onWheel(origEvent) {
+            const event = normalizeWheel(origEvent);
+            if (origEvent.ctrlKey === true) {
+                origEvent.preventDefault();
+                delta.current += event.pixelY / 500;
+                model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
+                if (timeout.current) {
+                    clearTimeout(timeout.current);
+                }
+                timeout.current = setTimeout(() => {
+                    model.setScaleFactor(1);
+                    model.zoomTo(delta.current > 0
+                        ? model.bpPerPx * (1 + delta.current)
+                        : model.bpPerPx / (1 - delta.current));
+                    delta.current = 0;
+                }, 300);
+            }
+            else {
+                // this is needed to stop the event from triggering "back button
+                // action" on MacOSX etc.  but is a heuristic to avoid preventing the
+                // inner-track scroll behavior
+                if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
+                    origEvent.preventDefault();
+                }
+                delta.current += event.pixelX;
+                if (!scheduled.current) {
+                    // use rAF to make it so multiple event handlers aren't fired per-frame
+                    // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
+                    scheduled.current = true;
+                    window.requestAnimationFrame(() => {
+                        model.horizontalScroll(delta.current);
+                        delta.current = 0;
+                        scheduled.current = false;
+                    });
+                }
+            }
+        }
+        if (curr) {
+            curr.addEventListener('wheel', onWheel);
+            return () => {
+                curr.removeEventListener('wheel', onWheel);
+            };
+        }
+        return () => { };
+    }, [model, ref]);
+}
+//# sourceMappingURL=hooks.js.map

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package/esm/LinearGenomeView/components/util.d.ts

@@ -1,9 +1,8 @@
 import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
 import { SearchType } from '@jbrowse/core/data_adapters/BaseAdapter';
-import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
 import { SearchScope } from '@jbrowse/core/TextSearch/TextSearchManager';
 import { TextSearchManager } from '@jbrowse/core/util';
-export declare function dedupe(results: BaseResult[] | undefined, cb: (result: BaseResult) => string): BaseResult[];
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
 export declare function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }: {
     queryString: string;
     searchScope: SearchScope;
@@ -13,3 +12,7 @@ export declare function fetchResults({ queryString, searchType, searchScope, ran
     assembly?: Assembly;
 }): Promise<BaseResult[]>;
 export declare function splitLast(str: string, split: string): [string, string];
+export declare function getRelativeX<T extends {
+    clientX: number;
+    target: EventTarget | null;
+}>(event: T, element: HTMLElement | null): number;

package/esm/LinearGenomeView/components/util.js

@@ -1,7 +1,5 @@
+import { dedupe } from '@jbrowse/core/util';
 import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-export function dedupe(results = [], cb) {
-    return results.filter((elt, idx, self) => idx === self.findIndex(t => cb(t) === cb(elt)));
-}
 export async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
     var _a;
     if (!textSearchManager) {
@@ -26,4 +24,7 @@ export function splitLast(str, split) {
         return [before, after];
     }
 }
+export function getRelativeX(event, element) {
+    return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
+}
 //# sourceMappingURL=util.js.map

package/esm/LinearGenomeView/components/util.js.map

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