@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.2

package/dist/LinearGenomeView/components/Header.js

@@ -14,7 +14,7 @@ const ArrowForward_1 = __importDefault(require("@mui/icons-material/ArrowForward
 const ArrowBack_1 = __importDefault(require("@mui/icons-material/ArrowBack"));
 // locals
 const __1 = require("..");
-const OverviewScaleBar_1 = __importDefault(require("./OverviewScaleBar"));
+const OverviewScalebar_1 = __importDefault(require("./OverviewScalebar"));
 const ZoomControls_1 = __importDefault(require("./ZoomControls"));
 const SearchBox_1 = __importDefault(require("./SearchBox"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
@@ -79,7 +79,7 @@ const Controls = ({ model }) => {
         react_1.default.createElement("div", { className: classes.spacer })));
 };
 const LinearGenomeViewHeader = (0, mobx_react_1.observer)(({ model }) => {
-    return !model.hideHeader ? (model.hideHeaderOverview ? (react_1.default.createElement(Controls, { model: model })) : (react_1.default.createElement(OverviewScaleBar_1.default, { model: model },
+    return !model.hideHeader ? (model.hideHeaderOverview ? (react_1.default.createElement(Controls, { model: model })) : (react_1.default.createElement(OverviewScalebar_1.default, { model: model },
         react_1.default.createElement(Controls, { model: model })))) : null;
 });
 exports.default = LinearGenomeViewHeader;

package/dist/LinearGenomeView/components/HelpDialog.js

@@ -5,24 +5,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
+const ui_1 = require("@jbrowse/core/ui");
 function HelpDialog({ handleClose, }) {
-    const { classes } = useStyles();
-    return (react_1.default.createElement(material_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Using the search box",
-            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))) : null),
-        react_1.default.createElement(material_1.Divider, null),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Using the search box" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement("h3", null, "Searching"),
             react_1.default.createElement("ul", null,

package/dist/LinearGenomeView/components/HelpDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"HelpDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/HelpDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAQsB;AACtB,uCAA0C;AAC1C,sEAAiD;AAEjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAwB,UAAU,CAAC,EACjC,WAAW,GAGZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,8BAAC,eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,sDAAkB;YAClB;gBACE,+IAGK;gBACL;;oBAEM,6DAA2B;;oBAAI,4DAA0B;wKAI1D,CACF;YACL,6DAAyB;YACzB;gBACE;oBACE,mDAAiB;6DACd;gBACL;oBACE,mDAAiB;+CACd;gBACL;oBACE,0EAAwC;mFAErC;gBACL;oBACE,oEAAkC;0EAE/B;gBACL;oBACE,6DAA2B;8DACxB;gBACL;oBACE,yEAAuC;0FAEpC;gBACL;oBACE,2DAAyB;sEAEtB,CACF,CACS;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,YAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AAxED,6BAwEC"}
+{"version":3,"file":"HelpDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/HelpDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAA6E;AAC7E,yCAAyC;AAEzC,SAAwB,UAAU,CAAC,EACjC,WAAW,GAGZ;IACC,OAAO,CACL,8BAAC,WAAM,IACL,IAAI,QACJ,QAAQ,EAAC,IAAI,EACb,OAAO,EAAE,WAAW,EACpB,KAAK,EAAC,sBAAsB;QAE5B,8BAAC,wBAAa;YACZ,sDAAkB;YAClB;gBACE,+IAGK;gBACL;;oBAEM,6DAA2B;;oBAAI,4DAA0B;wKAI1D,CACF;YACL,6DAAyB;YACzB;gBACE;oBACE,mDAAiB;6DACd;gBACL;oBACE,mDAAiB;+CACd;gBACL;oBACE,0EAAwC;mFAErC;gBACL;oBACE,oEAAkC;0EAE/B;gBACL;oBACE,6DAA2B;8DACxB;gBACL;oBACE,yEAAuC;0FAEpC;gBACL;oBACE,2DAAyB;sEAEtB,CACF,CACS;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,YAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AAhED,6BAgEC"}

package/dist/LinearGenomeView/components/ImportForm.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const ImportForm: ({ model }: {
     model: LGV;
 }) => JSX.Element;

package/dist/LinearGenomeView/components/ImportForm.js

@@ -32,6 +32,7 @@ const mobx_react_1 = require("mobx-react");
 const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
+// icons
 const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 // locals
 const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
@@ -55,7 +56,6 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     const { assemblyNames, assemblyManager, textSearchManager } = session;
     const { rankSearchResults, isSearchDialogDisplayed, error } = model;
     const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
-    const [importError, setImportError] = (0, react_1.useState)(error);
     const [option, setOption] = (0, react_1.useState)();
     const searchScope = model.searchScope(selectedAsm);
     const assembly = assemblyManager.get(selectedAsm);
@@ -63,19 +63,21 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
     const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
-    const err = assemblyError || importError;
+    const displayError = assemblyError || error;
     const [value, setValue] = (0, react_1.useState)('');
     const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
     // useEffect resets to an "initial state" of displaying first region from assembly
-    // after assembly change
+    // after assembly change. needs to react to selectedAsm as well as r0 because changing
+    // assembly will run setValue('') and then r0 may not change if assembly names are the
+    // same across assemblies, but it still needs to be reset
     (0, react_1.useEffect)(() => {
         setValue(r0);
-    }, [r0]);
-    function navToOption(option) {
+    }, [r0, selectedAsm]);
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, selectedAsm);
+            await model.navToLocString(location, selectedAsm);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -89,14 +91,14 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     async function handleSelectedRegion(input) {
         try {
             if ((option === null || option === void 0 ? void 0 : option.getDisplayString()) === input && option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
             }
             else {
                 const [ref, rest] = (0, util_2.splitLast)(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, selectedAsm);
+                    await model.navToLocString(input, selectedAsm);
                 }
                 else {
                     const results = await (0, util_2.fetchResults)({
@@ -111,10 +113,10 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, selectedAsm);
+                        await model.navToLocString(input, selectedAsm);
                     }
                 }
             }
@@ -127,24 +129,24 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     // implementation notes:
     // having this wrapped in a form allows intuitive use of enter key to submit
     return (react_1.default.createElement("div", { className: classes.container },
-        err ? react_1.default.createElement(ui_1.ErrorMessage, { error: err }) : null,
+        displayError ? react_1.default.createElement(ui_1.ErrorMessage, { error: displayError }) : null,
         react_1.default.createElement(material_1.Container, { className: classes.importFormContainer },
-            react_1.default.createElement("form", { onSubmit: event => {
+            react_1.default.createElement("form", { onSubmit: async (event) => {
                     event.preventDefault();
                     model.setError(undefined);
                     if (value) {
-                        handleSelectedRegion(value);
+                        // has it's own error handling
+                        await handleSelectedRegion(value);
                     }
                 } },
                 react_1.default.createElement(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     react_1.default.createElement(material_1.Grid, { item: true },
                         react_1.default.createElement(material_1.FormControl, null,
                             react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
-                                    setImportError('');
                                     setSelectedAsm(val);
                                     setValue('');
                                 }, session: session, selected: selectedAsm }))),
-                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (err ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
+                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (assemblyError ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
                         react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: queryString => (0, util_2.fetchResults)({
                                 queryString,
                                 assembly,
@@ -152,7 +154,7 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                                 rankSearchResults,
                                 searchScope,
                             }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value, 
-                            // note: minWidth 270 accomodates full width of helperText
+                            // note: minWidth 270 accommodates full width of helperText
                             minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
                                 variant: 'outlined',
                                 helperText: 'Enter sequence name, feature name, or location',

package/dist/LinearGenomeView/components/ImportForm.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/LinearGenomeView.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const LinearGenomeView: ({ model }: {
     model: LGV;
 }) => JSX.Element;

package/dist/LinearGenomeView/components/LinearGenomeView.js

@@ -6,7 +6,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
-const react_error_boundary_1 = require("react-error-boundary");
 const Icons_1 = require("@jbrowse/core/ui/Icons");
 const ui_1 = require("@jbrowse/core/ui");
 const mobx_react_1 = require("mobx-react");
@@ -40,8 +39,7 @@ const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
         react_1.default.createElement(MiniControlsComponent, { model: model }),
         react_1.default.createElement(TracksContainer_1.default, { model: model }, !tracks.length ? (react_1.default.createElement(material_1.Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (react_1.default.createElement(react_1.default.Fragment, null,
             react_1.default.createElement(material_1.Typography, null, "No tracks active."),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(react_error_boundary_1.ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => react_1.default.createElement(ui_1.ErrorMessage, { error: error }) },
-            react_1.default.createElement(TrackContainer_1.default, { model: model, track: track }))))))));
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(TrackContainer_1.default, { key: track.id, model: model, track: track })))))));
 });
 exports.default = LinearGenomeView;
 //# sourceMappingURL=LinearGenomeView.js.map

package/dist/LinearGenomeView/components/LinearGenomeView.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAyD;AACzD,uCAA0C;AAC1C,kDAA2E;AAC3E,yCAAkD;AAClD,2CAAqC;AAIrC,sEAA6C;AAC7C,wEAA+C;AAC/C,8DAAqC;AACrC,4EAAmD;AACnD,gFAAuD;AAIvD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC5B,aAAa,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAChC;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,gBAAgB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC9D,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IACjE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,IAAI,CAAC,WAAW,IAAI,CAAC,KAAK,EAAE;QAC1B,OAAO,8BAAC,oBAAe,IAAC,OAAO,EAAC,IAAI,GAAG,CAAA;KACxC;IACD,IAAI,CAAC,mBAAmB,IAAI,KAAK,EAAE;QACjC,OAAO,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACpC;IAED,MAAM,qBAAqB,GAAG,KAAK,CAAC,qBAAqB,EAAE,CAAA;IAC3D,MAAM,eAAe,GAAG,KAAK,CAAC,eAAe,EAAE,CAAA;IAE/C,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QACjC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC1B,8BAAC,2BAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,wBAAwB,CAAC,KAAK,CAAC,GACxD,CACH,CAAC,CAAC,CAAC,IAAI;QACP,KAAK,CAAC,uBAAuB,CAAC,CAAC,CAAC,CAC/B,8BAAC,6BAAmB,IAClB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,GAC/D,CACH,CAAC,CAAC,CAAC,IAAI;QACR,8BAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,8BAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI;QACvC,8BAAC,yBAAe,IAAC,KAAK,EAAE,KAAK,IAC1B,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAChB,8BAAC,gBAAK,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAE,OAAO,CAAC,IAAI,IAC9C,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC3B;YACE,8BAAC,qBAAU,4BAA+B;YAC1C,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,KAAK,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,EACvB,SAAS,EAAE,8BAAC,qBAAiB,OAAG,0BAGzB,CACR,CACJ,CAAC,CAAC,CAAC,CACF,uCAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAQ,CACvC,CACK,CACT,CAAC,CAAC,CAAC,CACF,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,8BAAC,wBAAc,IAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CAC9D,CAAC,CACH,CACe,CACd,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,gBAAgB,CAAA"}

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts

@@ -1,4 +1,4 @@
 import { LinearGenomeViewModel, ExportSvgOptions } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
 export {};

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js

@@ -14,8 +14,8 @@ const Base1DViewModel_1 = __importDefault(require("@jbrowse/core/util/Base1DView
 // locals
 const Ruler_1 = __importDefault(require("./Ruler"));
 const __1 = require("..");
-const OverviewScaleBar_1 = require("./OverviewScaleBar");
-function ScaleBar({ model, fontSize }) {
+const OverviewScalebar_1 = require("./OverviewScalebar");
+function Scalebar({ model, fontSize }) {
     const { offsetPx, dynamicBlocks: { totalWidthPxWithoutBorders: totalWidthPx, totalBp }, } = model;
     const displayBp = (0, util_1.getBpDisplayStr)(totalBp);
     const x0 = Math.max(-offsetPx, 0);
@@ -83,12 +83,12 @@ const SVGHeader = ({ model }) => {
     return (react_1.default.createElement("g", { id: "header" },
         react_1.default.createElement("text", { x: 0, y: fontSize, fontSize: fontSize }, assemblyName),
         showCytobands ? (react_1.default.createElement("g", { transform: `translate(0 ${rulerHeight})` },
-            react_1.default.createElement(OverviewScaleBar_1.Cytobands, { overview: overview, assembly: assembly, block: block }),
+            react_1.default.createElement(OverviewScalebar_1.Cytobands, { overview: overview, assembly: assembly, block: block }),
             react_1.default.createElement("rect", { stroke: "red", fill: "rgb(255,0,0,0.1)", width: Math.max(lastOverviewPx - firstOverviewPx, 0.5), height: __1.HEADER_OVERVIEW_HEIGHT - 1, x: firstOverviewPx, y: 0.5 }),
             react_1.default.createElement("g", { transform: `translate(0,${__1.HEADER_OVERVIEW_HEIGHT})` },
-                react_1.default.createElement(OverviewScaleBar_1.Polygon, { overview: overview, model: model, useOffset: false })))) : null,
+                react_1.default.createElement(OverviewScalebar_1.Polygon, { overview: overview, model: model, useOffset: false })))) : null,
         react_1.default.createElement("g", { transform: `translate(0 ${fontSize + cytobandHeight})` },
-            react_1.default.createElement(ScaleBar, { model: model, fontSize: fontSize })),
+            react_1.default.createElement(Scalebar, { model: model, fontSize: fontSize })),
         react_1.default.createElement("g", { transform: `translate(0 ${rulerHeight + cytobandHeight})` },
             react_1.default.createElement(SVGRuler, { model: model, fontSize: fontSize, width: width }))));
 };

package/dist/LinearGenomeView/components/{OverviewRubberBand.d.ts → OverviewRubberband.d.ts}

@@ -1,11 +1,11 @@
 import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
-declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
+type LGV = LinearGenomeViewModel;
+declare function OverviewRubberband({ model, overview, ControlComponent, }: {
     model: LGV;
     overview: Base1DViewModel;
     ControlComponent?: React.ReactElement;
 }): JSX.Element;
-declare const _default: typeof OverviewRubberBand;
+declare const _default: typeof OverviewRubberband;
 export default _default;

package/dist/LinearGenomeView/components/{OverviewRubberBand.js → OverviewRubberband.js}

@@ -22,51 +22,30 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const util_1 = require("@jbrowse/core/util");
 const mobx_react_1 = require("mobx-react");
-const __1 = require("..");
-const useStyles = (0, mui_1.makeStyles)()(theme => {
-    const { tertiary, primary } = theme.palette;
-    const background = tertiary
-        ? (0, material_1.alpha)(tertiary.main, 0.7)
-        : (0, material_1.alpha)(primary.main, 0.7);
-    return {
-        rubberBand: {
-            height: '100%',
-            background,
-            position: 'absolute',
-            zIndex: 10,
-            textAlign: 'center',
-            overflow: 'hidden',
-        },
-        rubberBandControl: {
-            cursor: 'crosshair',
-            width: '100%',
-            minHeight: 8,
-        },
-        rubberBandText: {
-            color: tertiary ? tertiary.contrastText : primary.contrastText,
-        },
-        popover: {
-            mouseEvents: 'none',
-            cursor: 'crosshair',
-        },
-        paper: {
-            paddingLeft: theme.spacing(1),
-            paddingRight: theme.spacing(1),
-        },
-        guide: {
-            pointerEvents: 'none',
-            height: '100%',
-            width: 1,
-            position: 'absolute',
-            zIndex: 10,
-        },
-    };
+const RubberbandSpan_1 = __importDefault(require("./RubberbandSpan"));
+const util_2 = require("./util");
+const useStyles = (0, mui_1.makeStyles)()({
+    rubberbandControl: {
+        cursor: 'crosshair',
+        width: '100%',
+        minHeight: 8,
+    },
+    guide: {
+        pointerEvents: 'none',
+        height: '100%',
+        width: 1,
+        position: 'absolute',
+        zIndex: 10,
+    },
 });
 const HoverTooltip = (0, mobx_react_1.observer)(({ model, open, guideX, overview, }) => {
     var _a;
@@ -83,21 +62,19 @@ const HoverTooltip = (0, mobx_react_1.observer)(({ model, open, guideX, overview
                 left: guideX,
             } })));
 });
-function OverviewRubberBand({ model, overview, ControlComponent = react_1.default.createElement("div", null), }) {
+function OverviewRubberband({ model, overview, ControlComponent = react_1.default.createElement("div", null), }) {
     const { cytobandOffset } = model;
     const [startX, setStartX] = (0, react_1.useState)();
     const [currentX, setCurrentX] = (0, react_1.useState)();
     const [guideX, setGuideX] = (0, react_1.useState)();
     const controlsRef = (0, react_1.useRef)(null);
-    const rubberBandRef = (0, react_1.useRef)(null);
     const { classes } = useStyles();
     const mouseDragging = startX !== undefined;
     (0, react_1.useEffect)(() => {
         function globalMouseMove(event) {
             const ref = controlsRef.current;
             if (ref && mouseDragging) {
-                const relativeX = event.clientX - ref.getBoundingClientRect().left;
-                setCurrentX(relativeX);
+                setCurrentX((0, util_2.getRelativeX)(event, ref));
             }
         }
         function globalMouseUp() {
@@ -147,14 +124,10 @@ function OverviewRubberBand({ model, overview, ControlComponent = react_1.defaul
     function mouseDown(event) {
         event.preventDefault();
         event.stopPropagation();
-        if (controlsRef.current) {
-            setStartX(event.clientX - controlsRef.current.getBoundingClientRect().left);
-        }
+        setStartX((0, util_2.getRelativeX)(event, controlsRef.current));
     }
     function mouseMove(event) {
-        if (controlsRef.current) {
-            setGuideX(event.clientX - controlsRef.current.getBoundingClientRect().left);
-        }
+        setGuideX((0, util_2.getRelativeX)(event, controlsRef.current));
     }
     function mouseOut() {
         setGuideX(undefined);
@@ -162,7 +135,7 @@ function OverviewRubberBand({ model, overview, ControlComponent = react_1.defaul
     if (startX === undefined) {
         return (react_1.default.createElement("div", { style: { position: 'relative' } },
             guideX !== undefined ? (react_1.default.createElement(HoverTooltip, { model: model, open: !mouseDragging, overview: overview, guideX: guideX })) : null,
-            react_1.default.createElement("div", { className: classes.rubberBandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
+            react_1.default.createElement("div", { className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
     }
     let left = startX || 0;
     let width = 0;
@@ -182,33 +155,8 @@ function OverviewRubberBand({ model, overview, ControlComponent = react_1.defaul
         }
     }
     return (react_1.default.createElement("div", { style: { position: 'relative' } },
-        rubberBandRef.current ? (react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: {
-                    paper: classes.paper,
-                }, open: true, anchorEl: rubberBandRef.current, anchorOrigin: {
-                    vertical: 'top',
-                    horizontal: 'left',
-                }, transformOrigin: {
-                    vertical: 'bottom',
-                    horizontal: 'right',
-                }, keepMounted: true, disableRestoreFocus: true },
-                react_1.default.createElement(material_1.Typography, null, leftBpOffset ? (0, util_1.stringify)(leftBpOffset) : '')),
-            react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: {
-                    paper: classes.paper,
-                }, open: true, anchorEl: rubberBandRef.current, anchorOrigin: {
-                    vertical: 'top',
-                    horizontal: 'right',
-                }, transformOrigin: {
-                    vertical: 'bottom',
-                    horizontal: 'left',
-                }, keepMounted: true, disableRestoreFocus: true },
-                react_1.default.createElement(material_1.Typography, null, rightBpOffset ? (0, util_1.stringify)(rightBpOffset) : '')))) : null,
-        react_1.default.createElement("div", { ref: rubberBandRef, className: classes.rubberBand, style: {
-                left,
-                width: Math.abs(width),
-                height: __1.HEADER_OVERVIEW_HEIGHT,
-            } }),
-        react_1.default.createElement("div", { "data-testid": "rubberBand_controls", className: classes.rubberBandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
+        leftBpOffset && rightBpOffset ? (react_1.default.createElement(RubberbandSpan_1.default, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: width, left: left })) : null,
+        react_1.default.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
 }
-exports.default = (0, mobx_react_1.observer)(OverviewRubberBand);
-//# sourceMappingURL=OverviewRubberBand.js.map
+exports.default = (0, mobx_react_1.observer)(OverviewRubberband);
+//# sourceMappingURL=OverviewRubberband.js.map

package/dist/LinearGenomeView/components/OverviewRubberband.js.map

@@ -0,0 +1 @@
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package/{esm/LinearGenomeView/components/OverviewScaleBar.d.ts → dist/LinearGenomeView/components/OverviewScalebar.d.ts}

@@ -8,7 +8,7 @@ declare const Polygon: ({ model, overview, useOffset, }: {
     overview: Base1DViewModel;
     useOffset?: boolean | undefined;
 }) => JSX.Element | null;
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const Cytobands: ({ overview, block, assembly, }: {
     overview: Base1DViewModel;
     assembly?: ({
@@ -122,10 +122,10 @@ declare const Cytobands: ({ overview, block, assembly, }: {
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
     block: ContentBlock;
 }) => JSX.Element;
-declare function OverviewScaleBar({ model, children, }: {
+declare function OverviewScalebar({ model, children, }: {
     model: LGV;
     children: React.ReactNode;
 }): JSX.Element;
-declare const _default: typeof OverviewScaleBar;
+declare const _default: typeof OverviewScalebar;
 export default _default;
 export { Cytobands, Polygon };