@heyai-rules/pilo-masterkit 2.1.0 → 3.1.0

package/.agent/skills/continuous-learning-v2/scripts/test-parse-instinct.py

@@ -1,984 +1,984 @@
-"""Tests for continuous-learning-v2 instinct-cli.py
-
-Covers:
-  - parse_instinct_file() — content preservation, edge cases
-  - _validate_file_path() — path traversal blocking
-  - detect_project() — project detection with mocked git/env
-  - load_all_instincts() — loading from project + global dirs, dedup
-  - _load_instincts_from_dir() — directory scanning
-  - cmd_projects() — listing projects from registry
-  - cmd_status() — status display
-  - _promote_specific() — single instinct promotion
-  - _promote_auto() — auto-promotion across projects
-"""
-
-import importlib.util
-import io
-import json
-import os
-import sys
-from pathlib import Path
-from types import SimpleNamespace
-from unittest import mock
-
-import pytest
-
-# Load instinct-cli.py (hyphenated filename requires importlib)
-_spec = importlib.util.spec_from_file_location(
-    "instinct_cli",
-    os.path.join(os.path.dirname(__file__), "instinct-cli.py"),
-)
-_mod = importlib.util.module_from_spec(_spec)
-_spec.loader.exec_module(_mod)
-
-parse_instinct_file = _mod.parse_instinct_file
-_validate_file_path = _mod._validate_file_path
-detect_project = _mod.detect_project
-load_all_instincts = _mod.load_all_instincts
-load_project_only_instincts = _mod.load_project_only_instincts
-_load_instincts_from_dir = _mod._load_instincts_from_dir
-cmd_status = _mod.cmd_status
-cmd_projects = _mod.cmd_projects
-_promote_specific = _mod._promote_specific
-_promote_auto = _mod._promote_auto
-_find_cross_project_instincts = _mod._find_cross_project_instincts
-load_registry = _mod.load_registry
-_validate_instinct_id = _mod._validate_instinct_id
-_update_registry = _mod._update_registry
-
-
-# ─────────────────────────────────────────────
-# Fixtures
-# ─────────────────────────────────────────────
-
-SAMPLE_INSTINCT_YAML = """\
----
-id: test-instinct
-trigger: "when writing tests"
-confidence: 0.8
-domain: testing
-scope: project
----
-
-## Action
-Always write tests first.
-
-## Evidence
-TDD leads to better design.
-"""
-
-SAMPLE_GLOBAL_INSTINCT_YAML = """\
----
-id: global-instinct
-trigger: "always"
-confidence: 0.9
-domain: security
-scope: global
----
-
-## Action
-Validate all user input.
-"""
-
-
-@pytest.fixture
-def project_tree(tmp_path):
-    """Create a realistic project directory tree for testing."""
-    homunculus = tmp_path / ".claude" / "homunculus"
-    projects_dir = homunculus / "projects"
-    global_personal = homunculus / "instincts" / "personal"
-    global_inherited = homunculus / "instincts" / "inherited"
-    global_evolved = homunculus / "evolved"
-
-    for d in [
-        global_personal, global_inherited,
-        global_evolved / "skills", global_evolved / "commands", global_evolved / "agents",
-        projects_dir,
-    ]:
-        d.mkdir(parents=True, exist_ok=True)
-
-    return {
-        "root": tmp_path,
-        "homunculus": homunculus,
-        "projects_dir": projects_dir,
-        "global_personal": global_personal,
-        "global_inherited": global_inherited,
-        "global_evolved": global_evolved,
-        "registry_file": homunculus / "projects.json",
-    }
-
-
-@pytest.fixture
-def patch_globals(project_tree, monkeypatch):
-    """Patch module-level globals to use tmp_path-based directories."""
-    monkeypatch.setattr(_mod, "HOMUNCULUS_DIR", project_tree["homunculus"])
-    monkeypatch.setattr(_mod, "PROJECTS_DIR", project_tree["projects_dir"])
-    monkeypatch.setattr(_mod, "REGISTRY_FILE", project_tree["registry_file"])
-    monkeypatch.setattr(_mod, "GLOBAL_PERSONAL_DIR", project_tree["global_personal"])
-    monkeypatch.setattr(_mod, "GLOBAL_INHERITED_DIR", project_tree["global_inherited"])
-    monkeypatch.setattr(_mod, "GLOBAL_EVOLVED_DIR", project_tree["global_evolved"])
-    monkeypatch.setattr(_mod, "GLOBAL_OBSERVATIONS_FILE", project_tree["homunculus"] / "observations.jsonl")
-    return project_tree
-
-
-def _make_project(tree, pid="abc123", pname="test-project"):
-    """Create project directory structure and return a project dict."""
-    project_dir = tree["projects_dir"] / pid
-    personal_dir = project_dir / "instincts" / "personal"
-    inherited_dir = project_dir / "instincts" / "inherited"
-    for d in [personal_dir, inherited_dir,
-              project_dir / "evolved" / "skills",
-              project_dir / "evolved" / "commands",
-              project_dir / "evolved" / "agents",
-              project_dir / "observations.archive"]:
-        d.mkdir(parents=True, exist_ok=True)
-
-    return {
-        "id": pid,
-        "name": pname,
-        "root": str(tree["root"] / "fake-repo"),
-        "remote": "https://github.com/test/test-project.git",
-        "project_dir": project_dir,
-        "instincts_personal": personal_dir,
-        "instincts_inherited": inherited_dir,
-        "evolved_dir": project_dir / "evolved",
-        "observations_file": project_dir / "observations.jsonl",
-    }
-
-
-# ─────────────────────────────────────────────
-# parse_instinct_file tests
-# ─────────────────────────────────────────────
-
-MULTI_SECTION = """\
----
-id: instinct-a
-trigger: "when coding"
-confidence: 0.9
-domain: general
----
-
-## Action
-Do thing A.
-
-## Examples
-- Example A1
-
----
-id: instinct-b
-trigger: "when testing"
-confidence: 0.7
-domain: testing
----
-
-## Action
-Do thing B.
-"""
-
-
-def test_multiple_instincts_preserve_content():
-    result = parse_instinct_file(MULTI_SECTION)
-    assert len(result) == 2
-    assert "Do thing A." in result[0]["content"]
-    assert "Example A1" in result[0]["content"]
-    assert "Do thing B." in result[1]["content"]
-
-
-def test_single_instinct_preserves_content():
-    content = """\
----
-id: solo
-trigger: "when reviewing"
-confidence: 0.8
-domain: review
----
-
-## Action
-Check for security issues.
-
-## Evidence
-Prevents vulnerabilities.
-"""
-    result = parse_instinct_file(content)
-    assert len(result) == 1
-    assert "Check for security issues." in result[0]["content"]
-    assert "Prevents vulnerabilities." in result[0]["content"]
-
-
-def test_empty_content_no_error():
-    content = """\
----
-id: empty
-trigger: "placeholder"
-confidence: 0.5
-domain: general
----
-"""
-    result = parse_instinct_file(content)
-    assert len(result) == 1
-    assert result[0]["content"] == ""
-
-
-def test_parse_no_id_skipped():
-    """Instincts without an 'id' field should be silently dropped."""
-    content = """\
----
-trigger: "when doing nothing"
-confidence: 0.5
----
-
-No id here.
-"""
-    result = parse_instinct_file(content)
-    assert len(result) == 0
-
-
-def test_parse_confidence_is_float():
-    content = """\
----
-id: float-check
-trigger: "when parsing"
-confidence: 0.42
-domain: general
----
-
-Body.
-"""
-    result = parse_instinct_file(content)
-    assert isinstance(result[0]["confidence"], float)
-    assert result[0]["confidence"] == pytest.approx(0.42)
-
-
-def test_parse_trigger_strips_quotes():
-    content = """\
----
-id: quote-check
-trigger: "when quoting"
-confidence: 0.5
-domain: general
----
-
-Body.
-"""
-    result = parse_instinct_file(content)
-    assert result[0]["trigger"] == "when quoting"
-
-
-def test_parse_empty_string():
-    result = parse_instinct_file("")
-    assert result == []
-
-
-def test_parse_garbage_input():
-    result = parse_instinct_file("this is not yaml at all\nno frontmatter here")
-    assert result == []
-
-
-# ─────────────────────────────────────────────
-# _validate_file_path tests
-# ─────────────────────────────────────────────
-
-def test_validate_normal_path(tmp_path):
-    test_file = tmp_path / "test.yaml"
-    test_file.write_text("hello")
-    result = _validate_file_path(str(test_file), must_exist=True)
-    assert result == test_file.resolve()
-
-
-def test_validate_rejects_etc():
-    with pytest.raises(ValueError, match="system directory"):
-        _validate_file_path("/etc/passwd")
-
-
-def test_validate_rejects_var_log():
-    with pytest.raises(ValueError, match="system directory"):
-        _validate_file_path("/var/log/syslog")
-
-
-def test_validate_rejects_usr():
-    with pytest.raises(ValueError, match="system directory"):
-        _validate_file_path("/usr/local/bin/foo")
-
-
-def test_validate_rejects_proc():
-    with pytest.raises(ValueError, match="system directory"):
-        _validate_file_path("/proc/self/status")
-
-
-def test_validate_must_exist_fails(tmp_path):
-    with pytest.raises(ValueError, match="does not exist"):
-        _validate_file_path(str(tmp_path / "nonexistent.yaml"), must_exist=True)
-
-
-def test_validate_home_expansion(tmp_path):
-    """Tilde expansion should work."""
-    result = _validate_file_path("~/test.yaml")
-    assert str(result).startswith(str(Path.home()))
-
-
-def test_validate_relative_path(tmp_path, monkeypatch):
-    """Relative paths should be resolved."""
-    monkeypatch.chdir(tmp_path)
-    test_file = tmp_path / "rel.yaml"
-    test_file.write_text("content")
-    result = _validate_file_path("rel.yaml", must_exist=True)
-    assert result == test_file.resolve()
-
-
-# ─────────────────────────────────────────────
-# detect_project tests
-# ─────────────────────────────────────────────
-
-def test_detect_project_global_fallback(patch_globals, monkeypatch):
-    """When no git and no env var, should return global project."""
-    monkeypatch.delenv("CLAUDE_PROJECT_DIR", raising=False)
-
-    # Mock subprocess.run to simulate git not available
-    def mock_run(*args, **kwargs):
-        raise FileNotFoundError("git not found")
-
-    monkeypatch.setattr("subprocess.run", mock_run)
-
-    project = detect_project()
-    assert project["id"] == "global"
-    assert project["name"] == "global"
-
-
-def test_detect_project_from_env(patch_globals, monkeypatch, tmp_path):
-    """CLAUDE_PROJECT_DIR env var should be used as project root."""
-    fake_repo = tmp_path / "my-repo"
-    fake_repo.mkdir()
-    monkeypatch.setenv("CLAUDE_PROJECT_DIR", str(fake_repo))
-
-    # Mock git remote to return a URL
-    def mock_run(cmd, **kwargs):
-        if "rev-parse" in cmd:
-            return SimpleNamespace(returncode=0, stdout=str(fake_repo) + "\n", stderr="")
-        if "get-url" in cmd:
-            return SimpleNamespace(returncode=0, stdout="https://github.com/test/my-repo.git\n", stderr="")
-        return SimpleNamespace(returncode=1, stdout="", stderr="")
-
-    monkeypatch.setattr("subprocess.run", mock_run)
-
-    project = detect_project()
-    assert project["id"] != "global"
-    assert project["name"] == "my-repo"
-
-
-def test_detect_project_git_timeout(patch_globals, monkeypatch):
-    """Git timeout should fall through to global."""
-    monkeypatch.delenv("CLAUDE_PROJECT_DIR", raising=False)
-    import subprocess as sp
-
-    def mock_run(cmd, **kwargs):
-        raise sp.TimeoutExpired(cmd, 5)
-
-    monkeypatch.setattr("subprocess.run", mock_run)
-
-    project = detect_project()
-    assert project["id"] == "global"
-
-
-def test_detect_project_creates_directories(patch_globals, monkeypatch, tmp_path):
-    """detect_project should create the project dir structure."""
-    fake_repo = tmp_path / "structured-repo"
-    fake_repo.mkdir()
-    monkeypatch.setenv("CLAUDE_PROJECT_DIR", str(fake_repo))
-
-    def mock_run(cmd, **kwargs):
-        if "rev-parse" in cmd:
-            return SimpleNamespace(returncode=0, stdout=str(fake_repo) + "\n", stderr="")
-        if "get-url" in cmd:
-            return SimpleNamespace(returncode=1, stdout="", stderr="no remote")
-        return SimpleNamespace(returncode=1, stdout="", stderr="")
-
-    monkeypatch.setattr("subprocess.run", mock_run)
-
-    project = detect_project()
-    assert project["instincts_personal"].exists()
-    assert project["instincts_inherited"].exists()
-    assert (project["evolved_dir"] / "skills").exists()
-
-
-# ─────────────────────────────────────────────
-# _load_instincts_from_dir tests
-# ─────────────────────────────────────────────
-
-def test_load_from_empty_dir(tmp_path):
-    result = _load_instincts_from_dir(tmp_path, "personal", "project")
-    assert result == []
-
-
-def test_load_from_nonexistent_dir(tmp_path):
-    result = _load_instincts_from_dir(tmp_path / "does-not-exist", "personal", "project")
-    assert result == []
-
-
-def test_load_annotates_metadata(tmp_path):
-    """Loaded instincts should have _source_file, _source_type, _scope_label."""
-    yaml_file = tmp_path / "test.yaml"
-    yaml_file.write_text(SAMPLE_INSTINCT_YAML)
-
-    result = _load_instincts_from_dir(tmp_path, "personal", "project")
-    assert len(result) == 1
-    assert result[0]["_source_file"] == str(yaml_file)
-    assert result[0]["_source_type"] == "personal"
-    assert result[0]["_scope_label"] == "project"
-
-
-def test_load_defaults_scope_from_label(tmp_path):
-    """If an instinct has no 'scope' in frontmatter, it should default to scope_label."""
-    no_scope_yaml = """\
----
-id: no-scope
-trigger: "test"
-confidence: 0.5
-domain: general
----
-
-Body.
-"""
-    (tmp_path / "no-scope.yaml").write_text(no_scope_yaml)
-    result = _load_instincts_from_dir(tmp_path, "inherited", "global")
-    assert result[0]["scope"] == "global"
-
-
-def test_load_preserves_explicit_scope(tmp_path):
-    """If frontmatter has explicit scope, it should be preserved."""
-    yaml_file = tmp_path / "test.yaml"
-    yaml_file.write_text(SAMPLE_INSTINCT_YAML)
-
-    result = _load_instincts_from_dir(tmp_path, "personal", "global")
-    # Frontmatter says scope: project, scope_label is global
-    # The explicit scope should be preserved (not overwritten)
-    assert result[0]["scope"] == "project"
-
-
-def test_load_handles_corrupt_file(tmp_path, capsys):
-    """Corrupt YAML files should be warned about but not crash."""
-    # A file that will cause parse_instinct_file to return empty
-    (tmp_path / "good.yaml").write_text(SAMPLE_INSTINCT_YAML)
-    (tmp_path / "bad.yaml").write_text("not yaml\nno frontmatter")
-
-    result = _load_instincts_from_dir(tmp_path, "personal", "project")
-    # bad.yaml has no valid instincts (no id), so only good.yaml contributes
-    assert len(result) == 1
-    assert result[0]["id"] == "test-instinct"
-
-
-def test_load_supports_yml_extension(tmp_path):
-    yml_file = tmp_path / "test.yml"
-    yml_file.write_text(SAMPLE_INSTINCT_YAML)
-
-    result = _load_instincts_from_dir(tmp_path, "personal", "project")
-    ids = {i["id"] for i in result}
-    assert "test-instinct" in ids
-
-
-def test_load_supports_md_extension(tmp_path):
-    md_file = tmp_path / "legacy-instinct.md"
-    md_file.write_text(SAMPLE_INSTINCT_YAML)
-
-    result = _load_instincts_from_dir(tmp_path, "personal", "project")
-    ids = {i["id"] for i in result}
-    assert "test-instinct" in ids
-
-
-def test_load_instincts_from_dir_uses_utf8_encoding(tmp_path, monkeypatch):
-    yaml_file = tmp_path / "test.yaml"
-    yaml_file.write_text("placeholder")
-    calls = []
-
-    def fake_read_text(self, *args, **kwargs):
-        calls.append(kwargs.get("encoding"))
-        return SAMPLE_INSTINCT_YAML
-
-    monkeypatch.setattr(Path, "read_text", fake_read_text)
-    result = _load_instincts_from_dir(tmp_path, "personal", "project")
-    assert result[0]["id"] == "test-instinct"
-    assert calls == ["utf-8"]
-
-
-# ─────────────────────────────────────────────
-# load_all_instincts tests
-# ─────────────────────────────────────────────
-
-def test_load_all_project_and_global(patch_globals):
-    """Should load from both project and global directories."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    # Write a project instinct
-    (project["instincts_personal"] / "proj.yaml").write_text(SAMPLE_INSTINCT_YAML)
-    # Write a global instinct
-    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
-
-    result = load_all_instincts(project)
-    ids = {i["id"] for i in result}
-    assert "test-instinct" in ids
-    assert "global-instinct" in ids
-
-
-def test_load_all_project_overrides_global(patch_globals):
-    """When project and global have same ID, project wins."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    # Same ID but different confidence
-    proj_yaml = SAMPLE_INSTINCT_YAML.replace("id: test-instinct", "id: shared-id")
-    proj_yaml = proj_yaml.replace("confidence: 0.8", "confidence: 0.9")
-    glob_yaml = SAMPLE_GLOBAL_INSTINCT_YAML.replace("id: global-instinct", "id: shared-id")
-    glob_yaml = glob_yaml.replace("confidence: 0.9", "confidence: 0.3")
-
-    (project["instincts_personal"] / "shared.yaml").write_text(proj_yaml)
-    (tree["global_personal"] / "shared.yaml").write_text(glob_yaml)
-
-    result = load_all_instincts(project)
-    shared = [i for i in result if i["id"] == "shared-id"]
-    assert len(shared) == 1
-    assert shared[0]["_scope_label"] == "project"
-    assert shared[0]["confidence"] == 0.9
-
-
-def test_load_all_global_only(patch_globals):
-    """Global project should only load global instincts."""
-    tree = patch_globals
-    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
-
-    global_project = {
-        "id": "global",
-        "name": "global",
-        "root": "",
-        "project_dir": tree["homunculus"],
-        "instincts_personal": tree["global_personal"],
-        "instincts_inherited": tree["global_inherited"],
-        "evolved_dir": tree["global_evolved"],
-        "observations_file": tree["homunculus"] / "observations.jsonl",
-    }
-
-    result = load_all_instincts(global_project)
-    assert len(result) == 1
-    assert result[0]["id"] == "global-instinct"
-
-
-def test_load_project_only_excludes_global(patch_globals):
-    """load_project_only_instincts should NOT include global instincts."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    (project["instincts_personal"] / "proj.yaml").write_text(SAMPLE_INSTINCT_YAML)
-    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
-
-    result = load_project_only_instincts(project)
-    ids = {i["id"] for i in result}
-    assert "test-instinct" in ids
-    assert "global-instinct" not in ids
-
-
-def test_load_project_only_global_fallback_loads_global(patch_globals):
-    """Global fallback should return global instincts for project-only queries."""
-    tree = patch_globals
-    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
-
-    global_project = {
-        "id": "global",
-        "name": "global",
-        "root": "",
-        "project_dir": tree["homunculus"],
-        "instincts_personal": tree["global_personal"],
-        "instincts_inherited": tree["global_inherited"],
-        "evolved_dir": tree["global_evolved"],
-        "observations_file": tree["homunculus"] / "observations.jsonl",
-    }
-
-    result = load_project_only_instincts(global_project)
-    assert len(result) == 1
-    assert result[0]["id"] == "global-instinct"
-
-
-def test_load_all_empty(patch_globals):
-    """No instincts at all should return empty list."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    result = load_all_instincts(project)
-    assert result == []
-
-
-# ─────────────────────────────────────────────
-# cmd_status tests
-# ─────────────────────────────────────────────
-
-def test_cmd_status_no_instincts(patch_globals, monkeypatch, capsys):
-    """Status with no instincts should print fallback message."""
-    tree = patch_globals
-    project = _make_project(tree)
-    monkeypatch.setattr(_mod, "detect_project", lambda: project)
-
-    args = SimpleNamespace()
-    ret = cmd_status(args)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "No instincts found." in out
-
-
-def test_cmd_status_with_instincts(patch_globals, monkeypatch, capsys):
-    """Status should show project and global instinct counts."""
-    tree = patch_globals
-    project = _make_project(tree)
-    monkeypatch.setattr(_mod, "detect_project", lambda: project)
-
-    (project["instincts_personal"] / "proj.yaml").write_text(SAMPLE_INSTINCT_YAML)
-    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
-
-    args = SimpleNamespace()
-    ret = cmd_status(args)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "INSTINCT STATUS" in out
-    assert "Project instincts: 1" in out
-    assert "Global instincts:  1" in out
-    assert "PROJECT-SCOPED" in out
-    assert "GLOBAL" in out
-
-
-def test_cmd_status_returns_int(patch_globals, monkeypatch):
-    """cmd_status should always return an int."""
-    tree = patch_globals
-    project = _make_project(tree)
-    monkeypatch.setattr(_mod, "detect_project", lambda: project)
-
-    args = SimpleNamespace()
-    ret = cmd_status(args)
-    assert isinstance(ret, int)
-
-
-# ─────────────────────────────────────────────
-# cmd_projects tests
-# ─────────────────────────────────────────────
-
-def test_cmd_projects_empty_registry(patch_globals, capsys):
-    """No projects should print helpful message."""
-    args = SimpleNamespace()
-    ret = cmd_projects(args)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "No projects registered yet." in out
-
-
-def test_cmd_projects_with_registry(patch_globals, capsys):
-    """Should list projects from registry."""
-    tree = patch_globals
-
-    # Create a project dir with instincts
-    pid = "test123abc"
-    project = _make_project(tree, pid=pid, pname="my-app")
-    (project["instincts_personal"] / "inst.yaml").write_text(SAMPLE_INSTINCT_YAML)
-
-    # Write registry
-    registry = {
-        pid: {
-            "name": "my-app",
-            "root": "/home/user/my-app",
-            "remote": "https://github.com/user/my-app.git",
-            "last_seen": "2025-01-15T12:00:00Z",
-        }
-    }
-    tree["registry_file"].write_text(json.dumps(registry))
-
-    args = SimpleNamespace()
-    ret = cmd_projects(args)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "my-app" in out
-    assert pid in out
-    assert "1 personal" in out
-
-
-# ─────────────────────────────────────────────
-# _promote_specific tests
-# ─────────────────────────────────────────────
-
-def test_promote_specific_not_found(patch_globals, capsys):
-    """Promoting nonexistent instinct should fail."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    ret = _promote_specific(project, "nonexistent", force=True)
-    assert ret == 1
-    out = capsys.readouterr().out
-    assert "not found" in out
-
-
-def test_promote_specific_rejects_invalid_id(patch_globals, capsys):
-    """Path-like instinct IDs should be rejected before file writes."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    ret = _promote_specific(project, "../escape", force=True)
-    assert ret == 1
-    err = capsys.readouterr().err
-    assert "Invalid instinct ID" in err
-
-
-def test_promote_specific_already_global(patch_globals, capsys):
-    """Promoting an instinct that already exists globally should fail."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    # Write same-id instinct in both project and global
-    (project["instincts_personal"] / "shared.yaml").write_text(SAMPLE_INSTINCT_YAML)
-    global_yaml = SAMPLE_INSTINCT_YAML  # same id: test-instinct
-    (tree["global_personal"] / "shared.yaml").write_text(global_yaml)
-
-    ret = _promote_specific(project, "test-instinct", force=True)
-    assert ret == 1
-    out = capsys.readouterr().out
-    assert "already exists in global" in out
-
-
-def test_promote_specific_success(patch_globals, capsys):
-    """Promote a project instinct to global with --force."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    (project["instincts_personal"] / "inst.yaml").write_text(SAMPLE_INSTINCT_YAML)
-
-    ret = _promote_specific(project, "test-instinct", force=True)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "Promoted" in out
-
-    # Verify file was created in global dir
-    promoted_file = tree["global_personal"] / "test-instinct.yaml"
-    assert promoted_file.exists()
-    content = promoted_file.read_text()
-    assert "scope: global" in content
-    assert "promoted_from: abc123" in content
-
-
-# ─────────────────────────────────────────────
-# _promote_auto tests
-# ─────────────────────────────────────────────
-
-def test_promote_auto_no_candidates(patch_globals, capsys):
-    """Auto-promote with no cross-project instincts should say so."""
-    tree = patch_globals
-    project = _make_project(tree)
-
-    # Empty registry
-    tree["registry_file"].write_text("{}")
-
-    ret = _promote_auto(project, force=True, dry_run=False)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "No instincts qualify" in out
-
-
-def test_promote_auto_dry_run(patch_globals, capsys):
-    """Dry run should list candidates but not write files."""
-    tree = patch_globals
-
-    # Create two projects with the same high-confidence instinct
-    p1 = _make_project(tree, pid="proj1", pname="project-one")
-    p2 = _make_project(tree, pid="proj2", pname="project-two")
-
-    high_conf_yaml = """\
----
-id: cross-project-instinct
-trigger: "when reviewing"
-confidence: 0.95
-domain: security
-scope: project
----
-
-## Action
-Always review for injection.
-"""
-    (p1["instincts_personal"] / "cross.yaml").write_text(high_conf_yaml)
-    (p2["instincts_personal"] / "cross.yaml").write_text(high_conf_yaml)
-
-    # Write registry
-    registry = {
-        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-    }
-    tree["registry_file"].write_text(json.dumps(registry))
-
-    project = p1
-    ret = _promote_auto(project, force=True, dry_run=True)
-    assert ret == 0
-    out = capsys.readouterr().out
-    assert "DRY RUN" in out
-    assert "cross-project-instinct" in out
-
-    # Verify no file was created
-    assert not (tree["global_personal"] / "cross-project-instinct.yaml").exists()
-
-
-def test_promote_auto_writes_file(patch_globals, capsys):
-    """Auto-promote with force should write global instinct file."""
-    tree = patch_globals
-
-    p1 = _make_project(tree, pid="proj1", pname="project-one")
-    p2 = _make_project(tree, pid="proj2", pname="project-two")
-
-    high_conf_yaml = """\
----
-id: universal-pattern
-trigger: "when coding"
-confidence: 0.85
-domain: general
-scope: project
----
-
-## Action
-Use descriptive variable names.
-"""
-    (p1["instincts_personal"] / "uni.yaml").write_text(high_conf_yaml)
-    (p2["instincts_personal"] / "uni.yaml").write_text(high_conf_yaml)
-
-    registry = {
-        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-    }
-    tree["registry_file"].write_text(json.dumps(registry))
-
-    ret = _promote_auto(p1, force=True, dry_run=False)
-    assert ret == 0
-
-    promoted = tree["global_personal"] / "universal-pattern.yaml"
-    assert promoted.exists()
-    content = promoted.read_text()
-    assert "scope: global" in content
-    assert "auto-promoted" in content
-
-
-def test_promote_auto_skips_invalid_id(patch_globals, capsys):
-    tree = patch_globals
-
-    p1 = _make_project(tree, pid="proj1", pname="project-one")
-    p2 = _make_project(tree, pid="proj2", pname="project-two")
-
-    bad_id_yaml = """\
----
-id: ../escape
-trigger: "when coding"
-confidence: 0.9
-domain: general
-scope: project
----
-
-## Action
-Invalid id should be skipped.
-"""
-    (p1["instincts_personal"] / "bad.yaml").write_text(bad_id_yaml)
-    (p2["instincts_personal"] / "bad.yaml").write_text(bad_id_yaml)
-
-    registry = {
-        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-    }
-    tree["registry_file"].write_text(json.dumps(registry))
-
-    ret = _promote_auto(p1, force=True, dry_run=False)
-    assert ret == 0
-    err = capsys.readouterr().err
-    assert "Skipping invalid instinct ID" in err
-    assert not (tree["global_personal"] / "../escape.yaml").exists()
-
-
-# ─────────────────────────────────────────────
-# _find_cross_project_instincts tests
-# ─────────────────────────────────────────────
-
-def test_find_cross_project_empty_registry(patch_globals):
-    tree = patch_globals
-    tree["registry_file"].write_text("{}")
-    result = _find_cross_project_instincts()
-    assert result == {}
-
-
-def test_find_cross_project_single_project(patch_globals):
-    """Single project should return nothing (need 2+)."""
-    tree = patch_globals
-    p1 = _make_project(tree, pid="proj1", pname="project-one")
-    (p1["instincts_personal"] / "inst.yaml").write_text(SAMPLE_INSTINCT_YAML)
-
-    registry = {"proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"}}
-    tree["registry_file"].write_text(json.dumps(registry))
-
-    result = _find_cross_project_instincts()
-    assert result == {}
-
-
-def test_find_cross_project_shared_instinct(patch_globals):
-    """Same instinct ID in 2 projects should be found."""
-    tree = patch_globals
-    p1 = _make_project(tree, pid="proj1", pname="project-one")
-    p2 = _make_project(tree, pid="proj2", pname="project-two")
-
-    (p1["instincts_personal"] / "shared.yaml").write_text(SAMPLE_INSTINCT_YAML)
-    (p2["instincts_personal"] / "shared.yaml").write_text(SAMPLE_INSTINCT_YAML)
-
-    registry = {
-        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
-    }
-    tree["registry_file"].write_text(json.dumps(registry))
-
-    result = _find_cross_project_instincts()
-    assert "test-instinct" in result
-    assert len(result["test-instinct"]) == 2
-
-
-# ─────────────────────────────────────────────
-# load_registry tests
-# ─────────────────────────────────────────────
-
-def test_load_registry_missing_file(patch_globals):
-    result = load_registry()
-    assert result == {}
-
-
-def test_load_registry_corrupt_json(patch_globals):
-    tree = patch_globals
-    tree["registry_file"].write_text("not json at all {{{")
-    result = load_registry()
-    assert result == {}
-
-
-def test_load_registry_valid(patch_globals):
-    tree = patch_globals
-    data = {"abc": {"name": "test", "root": "/test"}}
-    tree["registry_file"].write_text(json.dumps(data))
-    result = load_registry()
-    assert result == data
-
-
-def test_load_registry_uses_utf8_encoding(monkeypatch):
-    calls = []
-
-    def fake_open(path, mode="r", *args, **kwargs):
-        calls.append(kwargs.get("encoding"))
-        return io.StringIO("{}")
-
-    monkeypatch.setattr(_mod, "open", fake_open, raising=False)
-    assert load_registry() == {}
-    assert calls == ["utf-8"]
-
-
-def test_validate_instinct_id():
-    assert _validate_instinct_id("good-id_1.0")
-    assert not _validate_instinct_id("../bad")
-    assert not _validate_instinct_id("bad/name")
-    assert not _validate_instinct_id(".hidden")
-
-
-def test_update_registry_atomic_replaces_file(patch_globals):
-    tree = patch_globals
-    _update_registry("abc123", "demo", "/repo", "https://example.com/repo.git")
-    data = json.loads(tree["registry_file"].read_text())
-    assert "abc123" in data
-    leftovers = list(tree["registry_file"].parent.glob(".projects.json.tmp.*"))
-    assert leftovers == []
+"""Tests for continuous-learning-v2 instinct-cli.py
+
+Covers:
+  - parse_instinct_file() — content preservation, edge cases
+  - _validate_file_path() — path traversal blocking
+  - detect_project() — project detection with mocked git/env
+  - load_all_instincts() — loading from project + global dirs, dedup
+  - _load_instincts_from_dir() — directory scanning
+  - cmd_projects() — listing projects from registry
+  - cmd_status() — status display
+  - _promote_specific() — single instinct promotion
+  - _promote_auto() — auto-promotion across projects
+"""
+
+import importlib.util
+import io
+import json
+import os
+import sys
+from pathlib import Path
+from types import SimpleNamespace
+from unittest import mock
+
+import pytest
+
+# Load instinct-cli.py (hyphenated filename requires importlib)
+_spec = importlib.util.spec_from_file_location(
+    "instinct_cli",
+    os.path.join(os.path.dirname(__file__), "instinct-cli.py"),
+)
+_mod = importlib.util.module_from_spec(_spec)
+_spec.loader.exec_module(_mod)
+
+parse_instinct_file = _mod.parse_instinct_file
+_validate_file_path = _mod._validate_file_path
+detect_project = _mod.detect_project
+load_all_instincts = _mod.load_all_instincts
+load_project_only_instincts = _mod.load_project_only_instincts
+_load_instincts_from_dir = _mod._load_instincts_from_dir
+cmd_status = _mod.cmd_status
+cmd_projects = _mod.cmd_projects
+_promote_specific = _mod._promote_specific
+_promote_auto = _mod._promote_auto
+_find_cross_project_instincts = _mod._find_cross_project_instincts
+load_registry = _mod.load_registry
+_validate_instinct_id = _mod._validate_instinct_id
+_update_registry = _mod._update_registry
+
+
+# ─────────────────────────────────────────────
+# Fixtures
+# ─────────────────────────────────────────────
+
+SAMPLE_INSTINCT_YAML = """\
+---
+id: test-instinct
+trigger: "when writing tests"
+confidence: 0.8
+domain: testing
+scope: project
+---
+
+## Action
+Always write tests first.
+
+## Evidence
+TDD leads to better design.
+"""
+
+SAMPLE_GLOBAL_INSTINCT_YAML = """\
+---
+id: global-instinct
+trigger: "always"
+confidence: 0.9
+domain: security
+scope: global
+---
+
+## Action
+Validate all user input.
+"""
+
+
+@pytest.fixture
+def project_tree(tmp_path):
+    """Create a realistic project directory tree for testing."""
+    homunculus = tmp_path / ".claude" / "homunculus"
+    projects_dir = homunculus / "projects"
+    global_personal = homunculus / "instincts" / "personal"
+    global_inherited = homunculus / "instincts" / "inherited"
+    global_evolved = homunculus / "evolved"
+
+    for d in [
+        global_personal, global_inherited,
+        global_evolved / "skills", global_evolved / "commands", global_evolved / "agents",
+        projects_dir,
+    ]:
+        d.mkdir(parents=True, exist_ok=True)
+
+    return {
+        "root": tmp_path,
+        "homunculus": homunculus,
+        "projects_dir": projects_dir,
+        "global_personal": global_personal,
+        "global_inherited": global_inherited,
+        "global_evolved": global_evolved,
+        "registry_file": homunculus / "projects.json",
+    }
+
+
+@pytest.fixture
+def patch_globals(project_tree, monkeypatch):
+    """Patch module-level globals to use tmp_path-based directories."""
+    monkeypatch.setattr(_mod, "HOMUNCULUS_DIR", project_tree["homunculus"])
+    monkeypatch.setattr(_mod, "PROJECTS_DIR", project_tree["projects_dir"])
+    monkeypatch.setattr(_mod, "REGISTRY_FILE", project_tree["registry_file"])
+    monkeypatch.setattr(_mod, "GLOBAL_PERSONAL_DIR", project_tree["global_personal"])
+    monkeypatch.setattr(_mod, "GLOBAL_INHERITED_DIR", project_tree["global_inherited"])
+    monkeypatch.setattr(_mod, "GLOBAL_EVOLVED_DIR", project_tree["global_evolved"])
+    monkeypatch.setattr(_mod, "GLOBAL_OBSERVATIONS_FILE", project_tree["homunculus"] / "observations.jsonl")
+    return project_tree
+
+
+def _make_project(tree, pid="abc123", pname="test-project"):
+    """Create project directory structure and return a project dict."""
+    project_dir = tree["projects_dir"] / pid
+    personal_dir = project_dir / "instincts" / "personal"
+    inherited_dir = project_dir / "instincts" / "inherited"
+    for d in [personal_dir, inherited_dir,
+              project_dir / "evolved" / "skills",
+              project_dir / "evolved" / "commands",
+              project_dir / "evolved" / "agents",
+              project_dir / "observations.archive"]:
+        d.mkdir(parents=True, exist_ok=True)
+
+    return {
+        "id": pid,
+        "name": pname,
+        "root": str(tree["root"] / "fake-repo"),
+        "remote": "https://github.com/test/test-project.git",
+        "project_dir": project_dir,
+        "instincts_personal": personal_dir,
+        "instincts_inherited": inherited_dir,
+        "evolved_dir": project_dir / "evolved",
+        "observations_file": project_dir / "observations.jsonl",
+    }
+
+
+# ─────────────────────────────────────────────
+# parse_instinct_file tests
+# ─────────────────────────────────────────────
+
+MULTI_SECTION = """\
+---
+id: instinct-a
+trigger: "when coding"
+confidence: 0.9
+domain: general
+---
+
+## Action
+Do thing A.
+
+## Examples
+- Example A1
+
+---
+id: instinct-b
+trigger: "when testing"
+confidence: 0.7
+domain: testing
+---
+
+## Action
+Do thing B.
+"""
+
+
+def test_multiple_instincts_preserve_content():
+    result = parse_instinct_file(MULTI_SECTION)
+    assert len(result) == 2
+    assert "Do thing A." in result[0]["content"]
+    assert "Example A1" in result[0]["content"]
+    assert "Do thing B." in result[1]["content"]
+
+
+def test_single_instinct_preserves_content():
+    content = """\
+---
+id: solo
+trigger: "when reviewing"
+confidence: 0.8
+domain: review
+---
+
+## Action
+Check for security issues.
+
+## Evidence
+Prevents vulnerabilities.
+"""
+    result = parse_instinct_file(content)
+    assert len(result) == 1
+    assert "Check for security issues." in result[0]["content"]
+    assert "Prevents vulnerabilities." in result[0]["content"]
+
+
+def test_empty_content_no_error():
+    content = """\
+---
+id: empty
+trigger: "placeholder"
+confidence: 0.5
+domain: general
+---
+"""
+    result = parse_instinct_file(content)
+    assert len(result) == 1
+    assert result[0]["content"] == ""
+
+
+def test_parse_no_id_skipped():
+    """Instincts without an 'id' field should be silently dropped."""
+    content = """\
+---
+trigger: "when doing nothing"
+confidence: 0.5
+---
+
+No id here.
+"""
+    result = parse_instinct_file(content)
+    assert len(result) == 0
+
+
+def test_parse_confidence_is_float():
+    content = """\
+---
+id: float-check
+trigger: "when parsing"
+confidence: 0.42
+domain: general
+---
+
+Body.
+"""
+    result = parse_instinct_file(content)
+    assert isinstance(result[0]["confidence"], float)
+    assert result[0]["confidence"] == pytest.approx(0.42)
+
+
+def test_parse_trigger_strips_quotes():
+    content = """\
+---
+id: quote-check
+trigger: "when quoting"
+confidence: 0.5
+domain: general
+---
+
+Body.
+"""
+    result = parse_instinct_file(content)
+    assert result[0]["trigger"] == "when quoting"
+
+
+def test_parse_empty_string():
+    result = parse_instinct_file("")
+    assert result == []
+
+
+def test_parse_garbage_input():
+    result = parse_instinct_file("this is not yaml at all\nno frontmatter here")
+    assert result == []
+
+
+# ─────────────────────────────────────────────
+# _validate_file_path tests
+# ─────────────────────────────────────────────
+
+def test_validate_normal_path(tmp_path):
+    test_file = tmp_path / "test.yaml"
+    test_file.write_text("hello")
+    result = _validate_file_path(str(test_file), must_exist=True)
+    assert result == test_file.resolve()
+
+
+def test_validate_rejects_etc():
+    with pytest.raises(ValueError, match="system directory"):
+        _validate_file_path("/etc/passwd")
+
+
+def test_validate_rejects_var_log():
+    with pytest.raises(ValueError, match="system directory"):
+        _validate_file_path("/var/log/syslog")
+
+
+def test_validate_rejects_usr():
+    with pytest.raises(ValueError, match="system directory"):
+        _validate_file_path("/usr/local/bin/foo")
+
+
+def test_validate_rejects_proc():
+    with pytest.raises(ValueError, match="system directory"):
+        _validate_file_path("/proc/self/status")
+
+
+def test_validate_must_exist_fails(tmp_path):
+    with pytest.raises(ValueError, match="does not exist"):
+        _validate_file_path(str(tmp_path / "nonexistent.yaml"), must_exist=True)
+
+
+def test_validate_home_expansion(tmp_path):
+    """Tilde expansion should work."""
+    result = _validate_file_path("~/test.yaml")
+    assert str(result).startswith(str(Path.home()))
+
+
+def test_validate_relative_path(tmp_path, monkeypatch):
+    """Relative paths should be resolved."""
+    monkeypatch.chdir(tmp_path)
+    test_file = tmp_path / "rel.yaml"
+    test_file.write_text("content")
+    result = _validate_file_path("rel.yaml", must_exist=True)
+    assert result == test_file.resolve()
+
+
+# ─────────────────────────────────────────────
+# detect_project tests
+# ─────────────────────────────────────────────
+
+def test_detect_project_global_fallback(patch_globals, monkeypatch):
+    """When no git and no env var, should return global project."""
+    monkeypatch.delenv("CLAUDE_PROJECT_DIR", raising=False)
+
+    # Mock subprocess.run to simulate git not available
+    def mock_run(*args, **kwargs):
+        raise FileNotFoundError("git not found")
+
+    monkeypatch.setattr("subprocess.run", mock_run)
+
+    project = detect_project()
+    assert project["id"] == "global"
+    assert project["name"] == "global"
+
+
+def test_detect_project_from_env(patch_globals, monkeypatch, tmp_path):
+    """CLAUDE_PROJECT_DIR env var should be used as project root."""
+    fake_repo = tmp_path / "my-repo"
+    fake_repo.mkdir()
+    monkeypatch.setenv("CLAUDE_PROJECT_DIR", str(fake_repo))
+
+    # Mock git remote to return a URL
+    def mock_run(cmd, **kwargs):
+        if "rev-parse" in cmd:
+            return SimpleNamespace(returncode=0, stdout=str(fake_repo) + "\n", stderr="")
+        if "get-url" in cmd:
+            return SimpleNamespace(returncode=0, stdout="https://github.com/test/my-repo.git\n", stderr="")
+        return SimpleNamespace(returncode=1, stdout="", stderr="")
+
+    monkeypatch.setattr("subprocess.run", mock_run)
+
+    project = detect_project()
+    assert project["id"] != "global"
+    assert project["name"] == "my-repo"
+
+
+def test_detect_project_git_timeout(patch_globals, monkeypatch):
+    """Git timeout should fall through to global."""
+    monkeypatch.delenv("CLAUDE_PROJECT_DIR", raising=False)
+    import subprocess as sp
+
+    def mock_run(cmd, **kwargs):
+        raise sp.TimeoutExpired(cmd, 5)
+
+    monkeypatch.setattr("subprocess.run", mock_run)
+
+    project = detect_project()
+    assert project["id"] == "global"
+
+
+def test_detect_project_creates_directories(patch_globals, monkeypatch, tmp_path):
+    """detect_project should create the project dir structure."""
+    fake_repo = tmp_path / "structured-repo"
+    fake_repo.mkdir()
+    monkeypatch.setenv("CLAUDE_PROJECT_DIR", str(fake_repo))
+
+    def mock_run(cmd, **kwargs):
+        if "rev-parse" in cmd:
+            return SimpleNamespace(returncode=0, stdout=str(fake_repo) + "\n", stderr="")
+        if "get-url" in cmd:
+            return SimpleNamespace(returncode=1, stdout="", stderr="no remote")
+        return SimpleNamespace(returncode=1, stdout="", stderr="")
+
+    monkeypatch.setattr("subprocess.run", mock_run)
+
+    project = detect_project()
+    assert project["instincts_personal"].exists()
+    assert project["instincts_inherited"].exists()
+    assert (project["evolved_dir"] / "skills").exists()
+
+
+# ─────────────────────────────────────────────
+# _load_instincts_from_dir tests
+# ─────────────────────────────────────────────
+
+def test_load_from_empty_dir(tmp_path):
+    result = _load_instincts_from_dir(tmp_path, "personal", "project")
+    assert result == []
+
+
+def test_load_from_nonexistent_dir(tmp_path):
+    result = _load_instincts_from_dir(tmp_path / "does-not-exist", "personal", "project")
+    assert result == []
+
+
+def test_load_annotates_metadata(tmp_path):
+    """Loaded instincts should have _source_file, _source_type, _scope_label."""
+    yaml_file = tmp_path / "test.yaml"
+    yaml_file.write_text(SAMPLE_INSTINCT_YAML)
+
+    result = _load_instincts_from_dir(tmp_path, "personal", "project")
+    assert len(result) == 1
+    assert result[0]["_source_file"] == str(yaml_file)
+    assert result[0]["_source_type"] == "personal"
+    assert result[0]["_scope_label"] == "project"
+
+
+def test_load_defaults_scope_from_label(tmp_path):
+    """If an instinct has no 'scope' in frontmatter, it should default to scope_label."""
+    no_scope_yaml = """\
+---
+id: no-scope
+trigger: "test"
+confidence: 0.5
+domain: general
+---
+
+Body.
+"""
+    (tmp_path / "no-scope.yaml").write_text(no_scope_yaml)
+    result = _load_instincts_from_dir(tmp_path, "inherited", "global")
+    assert result[0]["scope"] == "global"
+
+
+def test_load_preserves_explicit_scope(tmp_path):
+    """If frontmatter has explicit scope, it should be preserved."""
+    yaml_file = tmp_path / "test.yaml"
+    yaml_file.write_text(SAMPLE_INSTINCT_YAML)
+
+    result = _load_instincts_from_dir(tmp_path, "personal", "global")
+    # Frontmatter says scope: project, scope_label is global
+    # The explicit scope should be preserved (not overwritten)
+    assert result[0]["scope"] == "project"
+
+
+def test_load_handles_corrupt_file(tmp_path, capsys):
+    """Corrupt YAML files should be warned about but not crash."""
+    # A file that will cause parse_instinct_file to return empty
+    (tmp_path / "good.yaml").write_text(SAMPLE_INSTINCT_YAML)
+    (tmp_path / "bad.yaml").write_text("not yaml\nno frontmatter")
+
+    result = _load_instincts_from_dir(tmp_path, "personal", "project")
+    # bad.yaml has no valid instincts (no id), so only good.yaml contributes
+    assert len(result) == 1
+    assert result[0]["id"] == "test-instinct"
+
+
+def test_load_supports_yml_extension(tmp_path):
+    yml_file = tmp_path / "test.yml"
+    yml_file.write_text(SAMPLE_INSTINCT_YAML)
+
+    result = _load_instincts_from_dir(tmp_path, "personal", "project")
+    ids = {i["id"] for i in result}
+    assert "test-instinct" in ids
+
+
+def test_load_supports_md_extension(tmp_path):
+    md_file = tmp_path / "legacy-instinct.md"
+    md_file.write_text(SAMPLE_INSTINCT_YAML)
+
+    result = _load_instincts_from_dir(tmp_path, "personal", "project")
+    ids = {i["id"] for i in result}
+    assert "test-instinct" in ids
+
+
+def test_load_instincts_from_dir_uses_utf8_encoding(tmp_path, monkeypatch):
+    yaml_file = tmp_path / "test.yaml"
+    yaml_file.write_text("placeholder")
+    calls = []
+
+    def fake_read_text(self, *args, **kwargs):
+        calls.append(kwargs.get("encoding"))
+        return SAMPLE_INSTINCT_YAML
+
+    monkeypatch.setattr(Path, "read_text", fake_read_text)
+    result = _load_instincts_from_dir(tmp_path, "personal", "project")
+    assert result[0]["id"] == "test-instinct"
+    assert calls == ["utf-8"]
+
+
+# ─────────────────────────────────────────────
+# load_all_instincts tests
+# ─────────────────────────────────────────────
+
+def test_load_all_project_and_global(patch_globals):
+    """Should load from both project and global directories."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    # Write a project instinct
+    (project["instincts_personal"] / "proj.yaml").write_text(SAMPLE_INSTINCT_YAML)
+    # Write a global instinct
+    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
+
+    result = load_all_instincts(project)
+    ids = {i["id"] for i in result}
+    assert "test-instinct" in ids
+    assert "global-instinct" in ids
+
+
+def test_load_all_project_overrides_global(patch_globals):
+    """When project and global have same ID, project wins."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    # Same ID but different confidence
+    proj_yaml = SAMPLE_INSTINCT_YAML.replace("id: test-instinct", "id: shared-id")
+    proj_yaml = proj_yaml.replace("confidence: 0.8", "confidence: 0.9")
+    glob_yaml = SAMPLE_GLOBAL_INSTINCT_YAML.replace("id: global-instinct", "id: shared-id")
+    glob_yaml = glob_yaml.replace("confidence: 0.9", "confidence: 0.3")
+
+    (project["instincts_personal"] / "shared.yaml").write_text(proj_yaml)
+    (tree["global_personal"] / "shared.yaml").write_text(glob_yaml)
+
+    result = load_all_instincts(project)
+    shared = [i for i in result if i["id"] == "shared-id"]
+    assert len(shared) == 1
+    assert shared[0]["_scope_label"] == "project"
+    assert shared[0]["confidence"] == 0.9
+
+
+def test_load_all_global_only(patch_globals):
+    """Global project should only load global instincts."""
+    tree = patch_globals
+    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
+
+    global_project = {
+        "id": "global",
+        "name": "global",
+        "root": "",
+        "project_dir": tree["homunculus"],
+        "instincts_personal": tree["global_personal"],
+        "instincts_inherited": tree["global_inherited"],
+        "evolved_dir": tree["global_evolved"],
+        "observations_file": tree["homunculus"] / "observations.jsonl",
+    }
+
+    result = load_all_instincts(global_project)
+    assert len(result) == 1
+    assert result[0]["id"] == "global-instinct"
+
+
+def test_load_project_only_excludes_global(patch_globals):
+    """load_project_only_instincts should NOT include global instincts."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    (project["instincts_personal"] / "proj.yaml").write_text(SAMPLE_INSTINCT_YAML)
+    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
+
+    result = load_project_only_instincts(project)
+    ids = {i["id"] for i in result}
+    assert "test-instinct" in ids
+    assert "global-instinct" not in ids
+
+
+def test_load_project_only_global_fallback_loads_global(patch_globals):
+    """Global fallback should return global instincts for project-only queries."""
+    tree = patch_globals
+    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
+
+    global_project = {
+        "id": "global",
+        "name": "global",
+        "root": "",
+        "project_dir": tree["homunculus"],
+        "instincts_personal": tree["global_personal"],
+        "instincts_inherited": tree["global_inherited"],
+        "evolved_dir": tree["global_evolved"],
+        "observations_file": tree["homunculus"] / "observations.jsonl",
+    }
+
+    result = load_project_only_instincts(global_project)
+    assert len(result) == 1
+    assert result[0]["id"] == "global-instinct"
+
+
+def test_load_all_empty(patch_globals):
+    """No instincts at all should return empty list."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    result = load_all_instincts(project)
+    assert result == []
+
+
+# ─────────────────────────────────────────────
+# cmd_status tests
+# ─────────────────────────────────────────────
+
+def test_cmd_status_no_instincts(patch_globals, monkeypatch, capsys):
+    """Status with no instincts should print fallback message."""
+    tree = patch_globals
+    project = _make_project(tree)
+    monkeypatch.setattr(_mod, "detect_project", lambda: project)
+
+    args = SimpleNamespace()
+    ret = cmd_status(args)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "No instincts found." in out
+
+
+def test_cmd_status_with_instincts(patch_globals, monkeypatch, capsys):
+    """Status should show project and global instinct counts."""
+    tree = patch_globals
+    project = _make_project(tree)
+    monkeypatch.setattr(_mod, "detect_project", lambda: project)
+
+    (project["instincts_personal"] / "proj.yaml").write_text(SAMPLE_INSTINCT_YAML)
+    (tree["global_personal"] / "glob.yaml").write_text(SAMPLE_GLOBAL_INSTINCT_YAML)
+
+    args = SimpleNamespace()
+    ret = cmd_status(args)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "INSTINCT STATUS" in out
+    assert "Project instincts: 1" in out
+    assert "Global instincts:  1" in out
+    assert "PROJECT-SCOPED" in out
+    assert "GLOBAL" in out
+
+
+def test_cmd_status_returns_int(patch_globals, monkeypatch):
+    """cmd_status should always return an int."""
+    tree = patch_globals
+    project = _make_project(tree)
+    monkeypatch.setattr(_mod, "detect_project", lambda: project)
+
+    args = SimpleNamespace()
+    ret = cmd_status(args)
+    assert isinstance(ret, int)
+
+
+# ─────────────────────────────────────────────
+# cmd_projects tests
+# ─────────────────────────────────────────────
+
+def test_cmd_projects_empty_registry(patch_globals, capsys):
+    """No projects should print helpful message."""
+    args = SimpleNamespace()
+    ret = cmd_projects(args)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "No projects registered yet." in out
+
+
+def test_cmd_projects_with_registry(patch_globals, capsys):
+    """Should list projects from registry."""
+    tree = patch_globals
+
+    # Create a project dir with instincts
+    pid = "test123abc"
+    project = _make_project(tree, pid=pid, pname="my-app")
+    (project["instincts_personal"] / "inst.yaml").write_text(SAMPLE_INSTINCT_YAML)
+
+    # Write registry
+    registry = {
+        pid: {
+            "name": "my-app",
+            "root": "/home/user/my-app",
+            "remote": "https://github.com/user/my-app.git",
+            "last_seen": "2025-01-15T12:00:00Z",
+        }
+    }
+    tree["registry_file"].write_text(json.dumps(registry))
+
+    args = SimpleNamespace()
+    ret = cmd_projects(args)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "my-app" in out
+    assert pid in out
+    assert "1 personal" in out
+
+
+# ─────────────────────────────────────────────
+# _promote_specific tests
+# ─────────────────────────────────────────────
+
+def test_promote_specific_not_found(patch_globals, capsys):
+    """Promoting nonexistent instinct should fail."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    ret = _promote_specific(project, "nonexistent", force=True)
+    assert ret == 1
+    out = capsys.readouterr().out
+    assert "not found" in out
+
+
+def test_promote_specific_rejects_invalid_id(patch_globals, capsys):
+    """Path-like instinct IDs should be rejected before file writes."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    ret = _promote_specific(project, "../escape", force=True)
+    assert ret == 1
+    err = capsys.readouterr().err
+    assert "Invalid instinct ID" in err
+
+
+def test_promote_specific_already_global(patch_globals, capsys):
+    """Promoting an instinct that already exists globally should fail."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    # Write same-id instinct in both project and global
+    (project["instincts_personal"] / "shared.yaml").write_text(SAMPLE_INSTINCT_YAML)
+    global_yaml = SAMPLE_INSTINCT_YAML  # same id: test-instinct
+    (tree["global_personal"] / "shared.yaml").write_text(global_yaml)
+
+    ret = _promote_specific(project, "test-instinct", force=True)
+    assert ret == 1
+    out = capsys.readouterr().out
+    assert "already exists in global" in out
+
+
+def test_promote_specific_success(patch_globals, capsys):
+    """Promote a project instinct to global with --force."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    (project["instincts_personal"] / "inst.yaml").write_text(SAMPLE_INSTINCT_YAML)
+
+    ret = _promote_specific(project, "test-instinct", force=True)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "Promoted" in out
+
+    # Verify file was created in global dir
+    promoted_file = tree["global_personal"] / "test-instinct.yaml"
+    assert promoted_file.exists()
+    content = promoted_file.read_text()
+    assert "scope: global" in content
+    assert "promoted_from: abc123" in content
+
+
+# ─────────────────────────────────────────────
+# _promote_auto tests
+# ─────────────────────────────────────────────
+
+def test_promote_auto_no_candidates(patch_globals, capsys):
+    """Auto-promote with no cross-project instincts should say so."""
+    tree = patch_globals
+    project = _make_project(tree)
+
+    # Empty registry
+    tree["registry_file"].write_text("{}")
+
+    ret = _promote_auto(project, force=True, dry_run=False)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "No instincts qualify" in out
+
+
+def test_promote_auto_dry_run(patch_globals, capsys):
+    """Dry run should list candidates but not write files."""
+    tree = patch_globals
+
+    # Create two projects with the same high-confidence instinct
+    p1 = _make_project(tree, pid="proj1", pname="project-one")
+    p2 = _make_project(tree, pid="proj2", pname="project-two")
+
+    high_conf_yaml = """\
+---
+id: cross-project-instinct
+trigger: "when reviewing"
+confidence: 0.95
+domain: security
+scope: project
+---
+
+## Action
+Always review for injection.
+"""
+    (p1["instincts_personal"] / "cross.yaml").write_text(high_conf_yaml)
+    (p2["instincts_personal"] / "cross.yaml").write_text(high_conf_yaml)
+
+    # Write registry
+    registry = {
+        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+    }
+    tree["registry_file"].write_text(json.dumps(registry))
+
+    project = p1
+    ret = _promote_auto(project, force=True, dry_run=True)
+    assert ret == 0
+    out = capsys.readouterr().out
+    assert "DRY RUN" in out
+    assert "cross-project-instinct" in out
+
+    # Verify no file was created
+    assert not (tree["global_personal"] / "cross-project-instinct.yaml").exists()
+
+
+def test_promote_auto_writes_file(patch_globals, capsys):
+    """Auto-promote with force should write global instinct file."""
+    tree = patch_globals
+
+    p1 = _make_project(tree, pid="proj1", pname="project-one")
+    p2 = _make_project(tree, pid="proj2", pname="project-two")
+
+    high_conf_yaml = """\
+---
+id: universal-pattern
+trigger: "when coding"
+confidence: 0.85
+domain: general
+scope: project
+---
+
+## Action
+Use descriptive variable names.
+"""
+    (p1["instincts_personal"] / "uni.yaml").write_text(high_conf_yaml)
+    (p2["instincts_personal"] / "uni.yaml").write_text(high_conf_yaml)
+
+    registry = {
+        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+    }
+    tree["registry_file"].write_text(json.dumps(registry))
+
+    ret = _promote_auto(p1, force=True, dry_run=False)
+    assert ret == 0
+
+    promoted = tree["global_personal"] / "universal-pattern.yaml"
+    assert promoted.exists()
+    content = promoted.read_text()
+    assert "scope: global" in content
+    assert "auto-promoted" in content
+
+
+def test_promote_auto_skips_invalid_id(patch_globals, capsys):
+    tree = patch_globals
+
+    p1 = _make_project(tree, pid="proj1", pname="project-one")
+    p2 = _make_project(tree, pid="proj2", pname="project-two")
+
+    bad_id_yaml = """\
+---
+id: ../escape
+trigger: "when coding"
+confidence: 0.9
+domain: general
+scope: project
+---
+
+## Action
+Invalid id should be skipped.
+"""
+    (p1["instincts_personal"] / "bad.yaml").write_text(bad_id_yaml)
+    (p2["instincts_personal"] / "bad.yaml").write_text(bad_id_yaml)
+
+    registry = {
+        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+    }
+    tree["registry_file"].write_text(json.dumps(registry))
+
+    ret = _promote_auto(p1, force=True, dry_run=False)
+    assert ret == 0
+    err = capsys.readouterr().err
+    assert "Skipping invalid instinct ID" in err
+    assert not (tree["global_personal"] / "../escape.yaml").exists()
+
+
+# ─────────────────────────────────────────────
+# _find_cross_project_instincts tests
+# ─────────────────────────────────────────────
+
+def test_find_cross_project_empty_registry(patch_globals):
+    tree = patch_globals
+    tree["registry_file"].write_text("{}")
+    result = _find_cross_project_instincts()
+    assert result == {}
+
+
+def test_find_cross_project_single_project(patch_globals):
+    """Single project should return nothing (need 2+)."""
+    tree = patch_globals
+    p1 = _make_project(tree, pid="proj1", pname="project-one")
+    (p1["instincts_personal"] / "inst.yaml").write_text(SAMPLE_INSTINCT_YAML)
+
+    registry = {"proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"}}
+    tree["registry_file"].write_text(json.dumps(registry))
+
+    result = _find_cross_project_instincts()
+    assert result == {}
+
+
+def test_find_cross_project_shared_instinct(patch_globals):
+    """Same instinct ID in 2 projects should be found."""
+    tree = patch_globals
+    p1 = _make_project(tree, pid="proj1", pname="project-one")
+    p2 = _make_project(tree, pid="proj2", pname="project-two")
+
+    (p1["instincts_personal"] / "shared.yaml").write_text(SAMPLE_INSTINCT_YAML)
+    (p2["instincts_personal"] / "shared.yaml").write_text(SAMPLE_INSTINCT_YAML)
+
+    registry = {
+        "proj1": {"name": "project-one", "root": "/a", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+        "proj2": {"name": "project-two", "root": "/b", "remote": "", "last_seen": "2025-01-01T00:00:00Z"},
+    }
+    tree["registry_file"].write_text(json.dumps(registry))
+
+    result = _find_cross_project_instincts()
+    assert "test-instinct" in result
+    assert len(result["test-instinct"]) == 2
+
+
+# ─────────────────────────────────────────────
+# load_registry tests
+# ─────────────────────────────────────────────
+
+def test_load_registry_missing_file(patch_globals):
+    result = load_registry()
+    assert result == {}
+
+
+def test_load_registry_corrupt_json(patch_globals):
+    tree = patch_globals
+    tree["registry_file"].write_text("not json at all {{{")
+    result = load_registry()
+    assert result == {}
+
+
+def test_load_registry_valid(patch_globals):
+    tree = patch_globals
+    data = {"abc": {"name": "test", "root": "/test"}}
+    tree["registry_file"].write_text(json.dumps(data))
+    result = load_registry()
+    assert result == data
+
+
+def test_load_registry_uses_utf8_encoding(monkeypatch):
+    calls = []
+
+    def fake_open(path, mode="r", *args, **kwargs):
+        calls.append(kwargs.get("encoding"))
+        return io.StringIO("{}")
+
+    monkeypatch.setattr(_mod, "open", fake_open, raising=False)
+    assert load_registry() == {}
+    assert calls == ["utf-8"]
+
+
+def test_validate_instinct_id():
+    assert _validate_instinct_id("good-id_1.0")
+    assert not _validate_instinct_id("../bad")
+    assert not _validate_instinct_id("bad/name")
+    assert not _validate_instinct_id(".hidden")
+
+
+def test_update_registry_atomic_replaces_file(patch_globals):
+    tree = patch_globals
+    _update_registry("abc123", "demo", "/repo", "https://example.com/repo.git")
+    data = json.loads(tree["registry_file"].read_text())
+    assert "abc123" in data
+    leftovers = list(tree["registry_file"].parent.glob(".projects.json.tmp.*"))
+    assert leftovers == []